Citrus Sinensis ID: 023871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHccccccccccHHHHccccEEEEEEEcccEEEEEEEccccEEEEEEccccccccccccccccEEEEEEEEccccEEEccccHHHHHHHHcccccEEEEEEccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHEEEHHHHHHccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEccccccEEEEEEcccccHHHcccEEcccEEEEEEcccccccccHHHccHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslapssyaslysppplprtnqnpflfsqnshvwfkkncflsasgcscntllvkpSVFVAKAseteaqaspeaesgseeqeEKYEEYEVEIeqpyglkfakgrdggtyidaiapggsadktgmfqvGDKVLATSAVfgteiwpaaeygrtMYTIRQRVGPLLMKMQKRYgkmeqtgelSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFEsvlgskptpeessvasYNVACCYSKLNQVPLLLALIE
Flexible Loop (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASeteaqaspeaesgseeqeEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGteiwpaaeygrtmYTIRQRVGPLLMKMQKRYGKmeqtgelsekeiiraernsgvisnrvreiqmqnymkkkeqkerreqdlreglqlyrtgkyevAREKFesvlgskptpeesSVASYNVACCYSKLNQVPLLLALIE
Low Complexity Region (SEG)
MslapssyaslysppplpRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETeaqaspeaesgseeqeekyeeyeveieqpyGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMkkkeqkerreqDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE
Disordered region (IsUnstruct)
************************FLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVA****************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM***********************************************************LYRTGKY**********************ASYNVACCYSKLNQVPLLLALI*
Disordered Region (DISOPRED)
*************************************************************************************EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG***************************************************GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA*I*
Disordered Region (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKAS*************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYM***********DLREGLQLYRTGKYEVAREKFE***************SYNVACCYSKLNQVPLLLALIE
Disordered Region (DISPRO)
**********************NPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASE*****************EKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQxxxxxxxxxxxxxxxxxxxxxLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
F4J117	591	Phosphoglucan phosphatase	no	no	0.307	0.143	0.270	0.0001

>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 85  EEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA 144
            EY V +E+P G++FA   DG  ++ AI  G +A+K  +  VGD +   S   G  +   
Sbjct: 75  NEYMVTLEKPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKKASDSSGGTLVEI 134

Query: 145 AEYGRTMYTIRQRVGPLLMKMQKRY 169
            ++G T   + ++ G   + +++ +
Sbjct: 135 KDFGDTKKMLVEKTGSFSLVLERPF 159

Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Participates to the regulation of the initial steps of starch degradation at the granule surface. May release a different set of phosphate groups from those removed by DSP4.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224073126	344	predicted protein [Populus trichocarpa]	1.0	0.802	0.700	1e-103
225435790	329	PREDICTED: uncharacterized protein LOC10	0.938	0.787	0.729	1e-102
255564826	337	protein binding protein, putative [Ricin	0.963	0.789	0.729	1e-101
357519275	335	hypothetical protein MTR_8g088420 [Medic	0.978	0.805	0.661	1e-98
357519277	332	hypothetical protein MTR_8g088420 [Medic	0.967	0.804	0.654	2e-95
297847910	335	binding protein [Arabidopsis lyrata subs	0.931	0.767	0.697	1e-94
449463844	337	PREDICTED: uncharacterized protein LOC10	0.985	0.807	0.633	4e-93
255645435	342	unknown [Glycine max]	1.0	0.807	0.652	7e-92
147789082	1051	hypothetical protein VITISV_041015 [Viti	0.815	0.214	0.769	2e-91
18405391	335	ZKT protein containing PDZ, K-box and a	0.927	0.764	0.710	2e-91

>gi|224073126|ref|XP_002303984.1| predicted protein [Populus trichocarpa] gi|222841416|gb|EEE78963.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/287 (70%), Positives = 226/287 (78%), Gaps = 11/287 (3%)

Query: 1   MSLAPSSYASLYSPPPLPRTN----QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPS 56
           MSLAPS Y +LYS  PLP ++    Q P LFSQN+H   K   FLS S    NTLL+KPS
Sbjct: 1   MSLAPSRYPALYSSSPLPTSSVQAKQIPLLFSQNTHFLSKNYSFLSTSTAFSNTLLLKPS 60

Query: 57  VFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-------QPYGLKFAKGRDGGTYI 109
             + KASETE+Q S  AESGS  + E   E E + E       QPYG+KFAKGRDG TYI
Sbjct: 61  NSILKASETESQTSKSAESGSGGEGEGEGEGEEKYEEYEVEIEQPYGIKFAKGRDGSTYI 120

Query: 110 DAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169
           DAIAPGGSADK G F VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPL MKMQKRY
Sbjct: 121 DAIAPGGSADKNGKFSVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLFMKMQKRY 180

Query: 170 GKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTG 229
           G M+ TGEL+EKEIIRAERNSGVISNRVREIQMQNY++KKEQKE+RE+DLREGLQLY+  
Sbjct: 181 GNMDYTGELTEKEIIRAERNSGVISNRVREIQMQNYLRKKEQKEQREKDLREGLQLYKNA 240

Query: 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
           KYE A EKFES+LGSKP P E++VASYNVACCYSKLNQ+   L+ +E
Sbjct: 241 KYEEALEKFESMLGSKPDPTEAAVASYNVACCYSKLNQLQAGLSALE 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435790|ref|XP_002285744.1| PREDICTED: uncharacterized protein LOC100241562 [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/288 (72%), Positives = 226/288 (78%), Gaps = 29/288 (10%)

Query: 1   MSLAPSSYASLYSPPPLPRT---NQNPFLFSQNSHVWFKKNCFLSASGCS---------C 48
           MSLAPSSYASLYS PPLPRT    Q+ F             C L  S  S         C
Sbjct: 1   MSLAPSSYASLYSSPPLPRTVPMRQSSF-------------CKLPCSNHSSIPTGLISFC 47

Query: 49  NTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTY 108
           NT LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGTY
Sbjct: 48  NTHLVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGTY 103

Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168
           IDAIAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKR
Sbjct: 104 IDAIAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKR 163

Query: 169 YGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRT 228
           YGK++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQLYR+
Sbjct: 164 YGKVDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLYRS 223

Query: 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
            KYE A +KFESVLGSKP P E+S ASYNVACCYSKLNQ+   L+ +E
Sbjct: 224 AKYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALE 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564826|ref|XP_002523407.1| protein binding protein, putative [Ricinus communis] gi|223537357|gb|EEF38986.1| protein binding protein, putative [Ricinus communis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/274 (72%), Positives = 232/274 (84%), Gaps = 8/274 (2%)

Query: 1   MSLAPSSYASLYSPPPLPRT---NQNPFLFSQNSHVWFKKNCFLSASGCSCNTL-LVKPS 56
           MSLAPSSYASLY+ PPLPRT    QNP +FSQN + +F KNC    +  S ++  L+KPS
Sbjct: 1   MSLAPSSYASLYTSPPLPRTITIKQNPLIFSQN-NPFFSKNCSFFTTSTSFSSTHLLKPS 59

Query: 57  VFVAKASETEAQASPEAESGS--EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAP 114
               KASETE++AS ++ESGS   E EE+YEEYEVE+ QPYG+KFAKGRDG TYIDAIAP
Sbjct: 60  NLTVKASETESKAS-KSESGSTEGEGEEQYEEYEVELLQPYGIKFAKGRDGATYIDAIAP 118

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQ 174
           GG+ADKTGMF VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMK+QKRYGK + 
Sbjct: 119 GGAADKTGMFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKLQKRYGKTDY 178

Query: 175 TGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVA 234
            GE++EKEIIRAERNSG IS+RVREIQMQNY++KKEQK +RE+DLR+GL LY+  KYE A
Sbjct: 179 AGEMTEKEIIRAERNSGFISDRVREIQMQNYLRKKEQKAQREKDLRDGLILYKNAKYEEA 238

Query: 235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268
            E+FESVLGSKP P E+SVASYNVACCYSKLNQ+
Sbjct: 239 LERFESVLGSKPDPNEASVASYNVACCYSKLNQL 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519275|ref|XP_003629926.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|217073920|gb|ACJ85320.1| unknown [Medicago truncatula] gi|355523948|gb|AET04402.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|388505444|gb|AFK40788.1| unknown [Medicago truncatula]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/284 (66%), Positives = 220/284 (77%), Gaps = 14/284 (4%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRYGK+
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKI 174

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 175 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 234

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ+   L+ +E
Sbjct: 235 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLE 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519277|ref|XP_003629927.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|355523949|gb|AET04403.1| hypothetical protein MTR_8g088420 [Medicago truncatula]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/284 (65%), Positives = 217/284 (76%), Gaps = 17/284 (5%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRY   
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRY--- 171

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 172 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 231

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ+   L+ +E
Sbjct: 232 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLE 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847910|ref|XP_002891836.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337678|gb|EFH68095.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/258 (69%), Positives = 206/258 (79%), Gaps = 1/258 (0%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSE 78
           +T QNP L +Q+S +  K     S S   CNT + K     +KASETE+ A  E      
Sbjct: 22  QTKQNPSLITQSSFISAKSLFLSSNSNSLCNTHVAKRRNLASKASETESTAKTEGGG-EG 80

Query: 79  EQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138
           E EEKYE YEVE+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVFG
Sbjct: 81  EAEEKYETYEVEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVFG 140

Query: 139 TEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVR 198
           TEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E  GEL+EKEIIRAERN+G IS+R+R
Sbjct: 141 TEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDAGELTEKEIIRAERNAGYISSRLR 200

Query: 199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV 258
           EIQMQNY++KKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYNV
Sbjct: 201 EIQMQNYLRKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYNV 260

Query: 259 ACCYSKLNQVPLLLALIE 276
           ACCYSKLNQV   L+ +E
Sbjct: 261 ACCYSKLNQVQAGLSALE 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463844|ref|XP_004149641.1| PREDICTED: uncharacterized protein LOC101217229 [Cucumis sativus] gi|449522778|ref|XP_004168403.1| PREDICTED: uncharacterized LOC101217229 [Cucumis sativus]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 178/281 (63%), Positives = 215/281 (76%), Gaps = 9/281 (3%)

Query: 1   MSLAPSSYASLY-----SPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKP 55
           MSLAP    S +      PP    ++ + F+    SH    K   L  S     +  +K 
Sbjct: 5   MSLAPPYLYSSHLLPKICPPNHSSSSSSSFILCSQSHSH-PKLSHLPFSTSFSTSHSLKH 63

Query: 56  SVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPG 115
           S F+ +AS+TE++   +++   +  ++ YEEYEVE+EQPYGLKFAKGRDGGTYIDAIAPG
Sbjct: 64  SPFILRASDTESKTDTDSD---DPNQQPYEEYEVELEQPYGLKFAKGRDGGTYIDAIAPG 120

Query: 116 GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQT 175
           G ADKTG+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK +  
Sbjct: 121 GFADKTGLFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKTDSF 180

Query: 176 GELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAR 235
           GEL+EKEIIRAERNSGV+SN+VREIQ+QN ++ KEQK RRE DLR+GL+LY+  KYE A 
Sbjct: 181 GELTEKEIIRAERNSGVVSNKVREIQLQNALRMKEQKARRENDLRQGLRLYKNAKYEEAL 240

Query: 236 EKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
           EKFESVLGSKPTP+E+SVASYNVACCYS+LNQ+   L+ +E
Sbjct: 241 EKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALE 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645435|gb|ACU23213.1| unknown [Glycine max]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 186/285 (65%), Positives = 218/285 (76%), Gaps = 9/285 (3%)

Query: 1   MSL--APSSYASLYSPPPLPRTNQ-NPFLFSQNSHVWFKKN-CFLSASGCSCNTLLVKPS 56
           MSL    S ++S+YS   LPRT Q +P LFS  +  +  K+  +   S C  NTLL +P 
Sbjct: 1   MSLPTTTSGHSSIYSALTLPRTTQIHPTLFSPTTKFFSSKSPSYSGLSNCFSNTLLSRPL 60

Query: 57  VFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAI 112
           +F  KAS      + + ES   E+EE+ EE   E E    QP+GLKFAKGRDGGTYIDAI
Sbjct: 61  LFAVKASSGVGSEASKQESDKSEEEEEEEEPYEEYEVEIEQPFGLKFAKGRDGGTYIDAI 120

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK- 171
           APGGSADK G+F VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK 
Sbjct: 121 APGGSADKAGVFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKN 180

Query: 172 MEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKY 231
           ++  GEL+EKEIIRAERNSG ISNRVREIQM N ++K+EQKERRE+DLREGLQLY+ GKY
Sbjct: 181 IDSGGELTEKEIIRAERNSGFISNRVREIQMLNALRKREQKERREKDLREGLQLYKNGKY 240

Query: 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
           + A EKFES+LGSKP PEE++VASYNVACCY KLNQ    L+ +E
Sbjct: 241 DEALEKFESILGSKPEPEEAAVASYNVACCYFKLNQTQAALSSLE 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789082|emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/239 (76%), Positives = 199/239 (83%), Gaps = 14/239 (5%)

Query: 48  CNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGT 107
           CNT LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGT
Sbjct: 759 CNTHLVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGT 814

Query: 108 YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167
           YIDAIAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQK
Sbjct: 815 YIDAIAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQK 874

Query: 168 RYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLY- 226
           RYGK++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQL  
Sbjct: 875 RYGKVDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLLQ 934

Query: 227 ---------RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276
                    R+ KYE A +KFESVLGSKP P E+S ASYNVACCYSKLNQ+   L+ +E
Sbjct: 935 YCFFFDYNKRSAKYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALE 993

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405391|ref|NP_564691.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana] gi|14532604|gb|AAK64030.1| unknown protein [Arabidopsis thaliana] gi|19310719|gb|AAL85090.1| unknown protein [Arabidopsis thaliana] gi|65329373|gb|AAY42135.1| GAN [Arabidopsis thaliana] gi|66766206|dbj|BAD99102.1| hypothetical protein [Arabidopsis thaliana] gi|332195129|gb|AEE33250.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/259 (71%), Positives = 213/259 (82%), Gaps = 3/259 (1%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETEAQASPEAESGS 77
           +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASETE+ A  EA    
Sbjct: 22  QTKQNPSLITQSSFIS-AKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGG-D 79

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
            E+EEKYE YE+E+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct: 80  GEEEEKYETYEIEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
           GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct: 140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query: 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
           REIQMQNY+KKKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct: 200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query: 258 VACCYSKLNQVPLLLALIE 276
           VACCYSKLNQV   L+ +E
Sbjct: 260 VACCYSKLNQVQAGLSALE 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2193844	335	ZKT "protein containing PDZ do	0.927	0.764	0.613	3.5e-75
TAIR|locus:2167150	271	ENH1 "enhancer of sos3-1" [Ara	0.221	0.225	0.387	0.00018

TAIR|locus:2193844 ZKT "protein containing PDZ domain, a K-box domain, and a TPR region" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 159/259 (61%), Positives = 182/259 (70%)

Query:    19 RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETXXXXXXXXXXXX 77
             +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASET            
Sbjct:    22 QTKQNPSLITQSSFI-SAKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGGDG 80

Query:    78 XXXXXXXXXXXXXXXXXXGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
                               GLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct:    81 EEEEKYETYEIEVEQPY-GLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query:   138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
             GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct:   140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query:   198 REIQMQNYMXXXXXXXXXXXDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
             REIQMQNY+           DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct:   200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query:   258 VACCYSKLNQVPLLLALIE 276
             VACCYSKLNQV   L+ +E
Sbjct:   260 VACCYSKLNQVQAGLSALE 278

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2167150 ENH1 "enhancer of sos3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query:    96 GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155
             GL   + + GG  I  +  GG+A K G+ + GD+V+ TS+ FG E+WPA + G T   I+
Sbjct:    95 GLTLGQKQGGGVVITGVDGGGNAAKAGL-KSGDQVVYTSSFFGDELWPADKLGFTKTAIQ 153

Query:   156 QR 157
              +
Sbjct:   154 AK 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       218   0.00091  112 3  11 22  0.39    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.76u 0.17s 16.93t   Elapsed:  00:00:00
  Total cpu time:  16.76u 0.17s 16.93t   Elapsed:  00:00:00
  Start:  Sat May 11 00:48:44 2013   End:  Sat May 11 00:48:44 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0046872 "metal ion binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-04
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	3e-04
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	3e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	7e-04

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 86  EYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              V +        G     G+D  GG ++  + PGG A++ G+ +VGD++L 
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGL-RVGDRILE 52

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263
           GL L+  G+ + A  +FE+ L   P P+E+  A YN ACC++
Sbjct: 82  GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA 123

Length = 453

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E   VE+E      G     G+D  GG  + ++ PG  A K G+ +VGD +L 
Sbjct: 1   EPRLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGL-RVGDVILE 52

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 94  PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             G     G +GG  + ++ PG  A++ G  Q GD +LA
Sbjct: 2   GLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILA 39

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.16
KOG0553	304	consensus TPR repeat-containing protein [General f	98.96
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.79
KOG4234	271	consensus TPR repeat-containing protein [General f	98.71
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.58
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.51
PRK15359	144	type III secretion system chaperone protein SscB;	98.49
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.24
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.23
PF13371	73	TPR_9: Tetratricopeptide repeat	98.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.16
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.16
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.15
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.09
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.08
PRK11189	296	lipoprotein NlpI; Provisional	98.07
PRK15359	144	type III secretion system chaperone protein SscB;	98.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.03
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.01
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.88
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	97.87
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	97.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.84
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.84
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.71
PF13431	34	TPR_17: Tetratricopeptide repeat	97.7
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.59
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.59
KOG4555	175	consensus TPR repeat-containing protein [Function	97.58
PRK12370	553	invasion protein regulator; Provisional	97.57
PRK11189	296	lipoprotein NlpI; Provisional	97.54
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.5
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.49
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.45
KOG1125	579	consensus TPR repeat-containing protein [General f	97.43
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.38
PRK10803	263	tol-pal system protein YbgF; Provisional	97.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.37
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.36
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.34
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.33
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.23
PF12688	120	TPR_5: Tetratrico peptide repeat	97.21
PF12688	120	TPR_5: Tetratrico peptide repeat	97.2
PRK12370	553	invasion protein regulator; Provisional	97.18
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.16
PF13428	44	TPR_14: Tetratricopeptide repeat	97.1
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.08
PF13512	142	TPR_18: Tetratricopeptide repeat	97.08
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.05
PRK10803	263	tol-pal system protein YbgF; Provisional	97.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.01
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.98
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.93
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	96.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.91
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.89
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.86
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.7
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	96.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.63
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.59
PF13512	142	TPR_18: Tetratricopeptide repeat	96.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.51
PRK15331	165	chaperone protein SicA; Provisional	96.5
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.37
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.36
KOG0553	304	consensus TPR repeat-containing protein [General f	96.35
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.31
PF13371	73	TPR_9: Tetratricopeptide repeat	96.28
KOG4234	271	consensus TPR repeat-containing protein [General f	96.28
PRK15331	165	chaperone protein SicA; Provisional	96.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.21
PRK11186	667	carboxy-terminal protease; Provisional	96.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.1
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	96.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.06
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	96.02
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	95.91
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.71
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.63
KOG2076	895	consensus RNA polymerase III transcription factor	95.53
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	95.53
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.5
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.5
KOG1126	638	consensus DNA-binding cell division cycle control	95.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.47
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.37
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.33
KOG1125	579	consensus TPR repeat-containing protein [General f	95.31
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.27
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.23
PLN00049	389	carboxyl-terminal processing protease; Provisional	95.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.12
PRK10139	455	serine endoprotease; Provisional	95.1
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.07
KOG3550	207	consensus Receptor targeting protein Lin-7 [Extrac	95.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.0
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.97
PRK10139	455	serine endoprotease; Provisional	94.95
PLN02789	320	farnesyltranstransferase	94.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.69
KOG1126	638	consensus DNA-binding cell division cycle control	94.68
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	94.65
PRK10898	353	serine endoprotease; Provisional	94.61
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	94.52
KOG2076	895	consensus RNA polymerase III transcription factor	94.51
KOG3209	984	consensus WW domain-containing protein [General fu	94.46
PLN02789	320	farnesyltranstransferase	94.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.43
PRK10942	473	serine endoprotease; Provisional	94.42
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.39
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.39
PRK14574	822	hmsH outer membrane protein; Provisional	94.37
PRK10942	473	serine endoprotease; Provisional	94.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	94.33
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.23
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.18
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.16
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.97
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.9
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.83
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	93.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.67
PRK10779	449	zinc metallopeptidase RseP; Provisional	93.66
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	93.65
KOG3580	1027	consensus Tight junction proteins [Signal transduc	93.62
COG3975	558	Predicted protease with the C-terminal PDZ domain	93.52
KOG1129	478	consensus TPR repeat-containing protein [General f	93.51
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.46
PRK11906	458	transcriptional regulator; Provisional	93.35
KOG3532	1051	consensus Predicted protein kinase [General functi	93.31
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.2
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.67
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	92.55
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.49
KOG2003	840	consensus TPR repeat-containing protein [General f	92.44
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.34
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	91.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	91.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.64
PRK14574	822	hmsH outer membrane protein; Provisional	91.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	91.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	91.26
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.19
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.09
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.96
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	90.84
KOG3209	984	consensus WW domain-containing protein [General fu	90.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.72
KOG2003	840	consensus TPR repeat-containing protein [General f	90.71
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	90.29
KOG3580	1027	consensus Tight junction proteins [Signal transduc	90.12
PRK10779	449	zinc metallopeptidase RseP; Provisional	90.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	90.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	89.89
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	89.88
KOG3605	829	consensus Beta amyloid precursor-binding protein [	89.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	89.24
KOG3129	231	consensus 26S proteasome regulatory complex, subun	89.02
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	88.78
PRK10941	269	hypothetical protein; Provisional	88.65
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.51
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	88.49
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	88.29
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.65
PF04212	69	MIT: MIT (microtubule interacting and transport) d	87.51
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	87.15
COG4105	254	ComL DNA uptake lipoprotein [General function pred	87.01
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.94
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.9
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.81
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	86.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	86.43
PRK14720	906	transcript cleavage factor/unknown domain fusion p	86.27
PRK04841	903	transcriptional regulator MalT; Provisional	86.17
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	86.16
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	86.11
KOG3938	334	consensus RGS-GAIP interacting protein GIPC, conta	86.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.92
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	85.61
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.58
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.46
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	85.35
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	85.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	85.22
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	84.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.63
COG0457	291	NrfG FOG: TPR repeat [General function prediction	84.09
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.64
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.62
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	83.54
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	83.45
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	83.16
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	83.13
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	83.06
KOG4555	175	consensus TPR repeat-containing protein [Function	82.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	82.67
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	82.62
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	82.47
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.35
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	81.97
KOG3552	1298	consensus FERM domain protein FRM-8 [General funct	81.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	81.42
PF13431	34	TPR_17: Tetratricopeptide repeat	81.32
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	81.23
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.96
COG3629	280	DnrI DNA-binding transcriptional activator of the	80.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	80.08
KOG3651	429	consensus Protein kinase C, alpha binding protein	80.07

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.16  E-value=5.2e-11  Score=117.62  Aligned_cols=62  Identities=29%  Similarity=0.508  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+.+++.|++|+++|+|++|++.|++||+++|++.+.+.+|||+||||+++|++++|+++|+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr  136 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR  136 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            56788999999999999999999999999999998877899999999999999999999874

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.1e-09  Score=103.63  Aligned_cols=64  Identities=30%  Similarity=0.331  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       210 elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +-+.++|+.+.+||.+.+.++|++||.+|++||+++|++.   +.|+|||.+|++||+++.||+..|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---VyycNRAAAy~~Lg~~~~AVkDce  139 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---VYYCNRAAAYSKLGEYEDAVKDCE  139 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHhcchHHHHHHHH
Confidence            6777888889999999999999999999999999999995   789999999999999999998754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.94  E-value=1.6e-09  Score=77.64  Aligned_cols=58  Identities=28%  Similarity=0.357  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-ChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg-q~~eAI~aL  275 (276)
                      ++.|+..|+.++..|+|++|+..|++||+++|++.   .+|+|++.||.++| ++++|+..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~g~~~~~~~~~~~~A~~~~   61 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---EAYYNLGLAYMKLGKDYEEAIEDF   61 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---HHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCccHHHHHHHH
Confidence            45688999999999999999999999999999996   59999999999999 799999876

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.1e-08  Score=100.80  Aligned_cols=82  Identities=16%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             cCCCcchhHHHHHH------------HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHH
Q 023871          189 NSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVAS  255 (276)
Q Consensus       189 ~~G~i~~al~Eiq~------------~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~  255 (276)
                      -.+|++++.+|+|+            ..|...|+|++.+    .+||.+|+.|+|..|.++|+.||.++|++-+. +.+|
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k----~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK----ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH----hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence            57999999999999            4466666666665    99999999999999999999999999998655 7788


Q ss_pred             HHHhHHHHhcCChhHHHhh
Q 023871          256 YNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       256 YN~AcCyaKLgq~~eAI~a  274 (276)
                      +|+|.++.+||+..+||..
T Consensus       291 ~nra~v~~rLgrl~eaisd  309 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISD  309 (486)
T ss_pred             HHhHhhhcccCCchhhhhh
Confidence            8888888888888888764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=3e-08  Score=90.87  Aligned_cols=62  Identities=29%  Similarity=0.414  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .++..++.+||.||+.|+|++|..+|..||++||.-.  +.+.+|.|+|.|..||++|+.||+.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d  156 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED  156 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence            4455677999999999999999999999999999864  3489999999999999999999964

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.65  E-value=7.7e-08  Score=72.05  Aligned_cols=74  Identities=23%  Similarity=0.618  Sum_probs=59.2

Q ss_pred             EEEecC----cceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           88 EVEIEQ----PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        88 ~V~l~K----PLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      +|+|.|    |+|+.+..+.+.   ++||.+|.|+|.|+++| |++||+|+.+...   .+ .--..-+++..|+...++
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~---~v-~~~~~~~~~~~l~~~~~~   75 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQ---SV-RGMSHDEVVQLLKSASNP   75 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTE---ES-TTSBHHHHHHHHHHSTSE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCE---eC-CCCCHHHHHHHHHCCCCc
Confidence            355555    999999998774   99999999999999999 9999999998763   11 112344678889988889


Q ss_pred             eEEEEe
Q 023871          161 LLMKMQ  166 (276)
Q Consensus       161 v~L~l~  166 (276)
                      |.|+++
T Consensus        76 v~L~V~   81 (81)
T PF00595_consen   76 VTLTVQ   81 (81)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999875

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.58  E-value=1.4e-07  Score=67.09  Aligned_cols=54  Identities=24%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..|..+++.|+|++|+..|+++|...|++.   .+|+..+.||..+|++++|+..+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~   54 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNP---EAWYLLGRILYQQGRYDEALAYY   54 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            3678999999999999999999999999986   68999999999999999999865

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.1e-07  Score=92.37  Aligned_cols=87  Identities=20%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             HhhcCCCcchhHHHHHH--HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          186 AERNSGVISNRVREIQM--QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~--~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      .|+-.+++.+++++.-+  ..+.+..-+... +++....||.+|+.|+|.+|+..|++||..+|++.   .+|+|+|.||
T Consensus       326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---~lYsNRAac~  402 (539)
T KOG0548|consen  326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---RLYSNRAACY  402 (539)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---HHHHHHHHHH
Confidence            34444555555555444  112222222222 34456889999999999999999999999999995   7999999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .+|+++..|+...
T Consensus       403 ~kL~~~~~aL~Da  415 (539)
T KOG0548|consen  403 LKLGEYPEALKDA  415 (539)
T ss_pred             HHHhhHHHHHHHH
Confidence            9999999999753

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.49  E-value=3.3e-07  Score=76.25  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=67.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      .+-...|++++++..++.     .-.+... .+.++..|..+...|+|++|+..|++|+.++|++.   .+|+|++.||.
T Consensus        32 ~~~~~~g~~~~A~~~~~~-----al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~---~a~~~lg~~l~  103 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSW-----LVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP---EPVYQTGVCLK  103 (144)
T ss_pred             HHHHHcCCHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHH
Confidence            334477888888655554     4444333 34567999999999999999999999999999996   68999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+.++
T Consensus       104 ~~g~~~eAi~~~  115 (144)
T PRK15359        104 MMGEPGLAREAF  115 (144)
T ss_pred             HcCCHHHHHHHH
Confidence            999999999876

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=3.2e-07  Score=92.16  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      .+.+...+++||..|+.|.|++||..|+.||++||+++   .-|.|+|+||..+|+|++-++
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---iFYsNraAcY~~lgd~~~Vie  170 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP---IFYSNRAACYESLGDWEKVIE  170 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc---hhhhhHHHHHHHHhhHHHHHH
Confidence            44455677999999999999999999999999999985   679999999999999998765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.40  E-value=5.5e-07  Score=67.57  Aligned_cols=78  Identities=23%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             CCCcchhHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          190 SGVISNRVREIQMQNYMKKKEQKE---RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       190 ~G~i~~al~Eiq~~nYkk~Kelkk---qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      .|++++++..+.     +.-+...   ...-++..|..+|+.|+|++|+..+++ +..+|.+.   ..+|-.|.||.++|
T Consensus         2 ~~~y~~Ai~~~~-----k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    2 QGNYENAIKYYE-----KLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---DIHYLLARCLLKLG   72 (84)
T ss_dssp             TT-HHHHHHHHH-----HHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---HHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHH-----HHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---HHHHHHHHHHHHhC
Confidence            567777755544     3333333   233467789999999999999999999 88888774   46778899999999


Q ss_pred             ChhHHHhhhC
Q 023871          267 QVPLLLALIE  276 (276)
Q Consensus       267 q~~eAI~aLE  276 (276)
                      ++++||.+|+
T Consensus        73 ~y~eAi~~l~   82 (84)
T PF12895_consen   73 KYEEAIKALE   82 (84)
T ss_dssp             -HHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            9999999885

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.37  E-value=4.7e-07  Score=64.44  Aligned_cols=49  Identities=33%  Similarity=0.425  Sum_probs=44.2

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      |++.|+|++|+..|+++++.+|++.   .++++.|-||.++|++++|...|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~   49 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNP---EARLLLAQCYLKQGQYDEAEELLE   49 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSH---HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5789999999999999999999986   589999999999999999998763

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=3e-06  Score=62.09  Aligned_cols=59  Identities=17%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGS----KPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      -..+-|..++..|+|++|+..|++||++    .++.+..+.+++|++.||..+|++++|++.+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~   69 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY   69 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3457899999999999999999999954    2334456899999999999999999999875

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.24  E-value=3.8e-06  Score=70.90  Aligned_cols=56  Identities=25%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +..|..+...|+|++|+..|++|+.+.|+..+...+++|+|.||.++|++++|+..
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~   94 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY   94 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45555555555555555555555555444332234455555555555555555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.23  E-value=3.2e-06  Score=84.55  Aligned_cols=79  Identities=18%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      ..|++++++.     .|.++-++.....-+.+.|..++++|+|++||..|++||+++|++.   .+|++++.||..+|++
T Consensus       139 ~~~~~~~Ai~-----~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~---~a~~~~a~a~~~lg~~  210 (615)
T TIGR00990       139 RNKDFNKAIK-----LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS---KALNRRANAYDGLGKY  210 (615)
T ss_pred             HcCCHHHHHH-----HHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCH
Confidence            5677777744     4555666666555577899999999999999999999999999985   6899999999999999


Q ss_pred             hHHHhhh
Q 023871          269 PLLLALI  275 (276)
Q Consensus       269 ~eAI~aL  275 (276)
                      ++|+..+
T Consensus       211 ~eA~~~~  217 (615)
T TIGR00990       211 ADALLDL  217 (615)
T ss_pred             HHHHHHH
Confidence            9998754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.22  E-value=2.3e-06  Score=61.66  Aligned_cols=51  Identities=24%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       223 naLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.+++.++|++|+..++++|.++|++.   .+|+++|.||.++|++++|++.|+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~   53 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDP---ELWLQRARCLFQLGRYEEALEDLE   53 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccc---hhhHHHHHHHHHhccHHHHHHHHH
Confidence            456899999999999999999999986   689999999999999999998874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.16  E-value=4.1e-06  Score=79.69  Aligned_cols=85  Identities=13%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|+++.++     ..|.++-++.... ..++..|..+.+.|+|++|+..|++||.++|++.   .+|++++.||
T Consensus         9 a~~a~~~~~~~~Ai-----~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~   80 (356)
T PLN03088          9 AKEAFVDDDFALAV-----DLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYLRKGTAC   80 (356)
T ss_pred             HHHHHHcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHH
Confidence            34444678888884     4466666666553 4467999999999999999999999999999885   5899999999


Q ss_pred             HhcCChhHHHhhhC
Q 023871          263 SKLNQVPLLLALIE  276 (276)
Q Consensus       263 aKLgq~~eAI~aLE  276 (276)
                      .++|++++|+..|+
T Consensus        81 ~~lg~~~eA~~~~~   94 (356)
T PLN03088         81 MKLEEYQTAKAALE   94 (356)
T ss_pred             HHhCCHHHHHHHHH
Confidence            99999999998874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.16  E-value=2.5e-06  Score=83.47  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             HHHhhcCCCcchhHHHHHH------------HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          184 IRAERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~------------~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      -.-.--.|+++++|++||+            ++||+.|++.|+.    +.+.++-..++|-+|++.++++|..+|...++
T Consensus       230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l----es~e~~ie~~~~t~cle~ge~vlk~ep~~~~i  305 (504)
T KOG0624|consen  230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL----ESAEQAIEEKHWTECLEAGEKVLKNEPEETMI  305 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence            3455589999999999999            8899999999999    78888899999999999999999999996544


Q ss_pred             -HHHHHHHhHHHHhcCChhHHHh
Q 023871          252 -SVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       252 -a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                       ...+--+|.||...|++-+||.
T Consensus       306 r~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  306 RYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             eeeeeheeeecccccCCHHHHHH
Confidence             3345556777777777777664

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.15  E-value=1.4e-05  Score=58.81  Aligned_cols=67  Identities=22%  Similarity=0.568  Sum_probs=53.5

Q ss_pred             cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEE
Q 023871           92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKM  165 (276)
Q Consensus        92 ~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l  165 (276)
                      .+|+|+.+....+  ++++|..|.+++.|+++| |++||+|+.+-..      +..  ++..++..++...+++.|.+
T Consensus        11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~------~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGV------SVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCE------EcCccCHHHHHHHHHhCCCeEEEEE
Confidence            4679999988754  699999999999999988 9999999997653      444  56677778887666777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.14  E-value=7e-06  Score=71.56  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|+++.|.+-||-     .-.+... .+-|+.-|..+...|+|++||..|.+|+.++||++   .+++|.+-||.++|+
T Consensus        47 ~~G~l~~A~~~f~~-----L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~~~~~ag~c~L~lG~  118 (157)
T PRK15363         47 EVKEFAGAARLFQL-----LTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---QAPWAAAECYLACDN  118 (157)
T ss_pred             HCCCHHHHHHHHHH-----HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC
Confidence            67888887554444     2222222 35588999999999999999999999999999997   689999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      .+.|.+++
T Consensus       119 ~~~A~~aF  126 (157)
T PRK15363        119 VCYAIKAL  126 (157)
T ss_pred             HHHHHHHH
Confidence            99999876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.12  E-value=1e-05  Score=67.73  Aligned_cols=62  Identities=16%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..++..|..++..|+|++|+..|++||.+.|+......+|+|+|+||.++|++++|+..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44556788888888888888888888888887765444568888888888888888888765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.09  E-value=1.5e-05  Score=60.50  Aligned_cols=88  Identities=17%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      -..|++++++..++.---+.... .......+..|..+++.|+|++|+..|++++...|+......++++.+-||.++++
T Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        13 LKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence            35688888876665521110000 00122356789999999999999999999999999976556789999999999999


Q ss_pred             hhHHHhhhC
Q 023871          268 VPLLLALIE  276 (276)
Q Consensus       268 ~~eAI~aLE  276 (276)
                      +++|+..++
T Consensus        92 ~~~A~~~~~  100 (119)
T TIGR02795        92 KEKAKATLQ  100 (119)
T ss_pred             hHHHHHHHH
Confidence            999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.08  E-value=1.3e-05  Score=76.41  Aligned_cols=56  Identities=11%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +++.+|+.+|..|+|++|+..|++||.++|++.   .+|+|+|.||.++|++++|+..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---~a~~~~a~~~~~~g~~~eAl~~~   59 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---ELYADRAQANIKLGNFTEAVADA   59 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            456889999999999999999999999999985   58999999999999999999876

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.07  E-value=9.7e-06  Score=74.63  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|+.+.++     ..|+++.++... .+.++..|..+...|+|++|+..|++||+++|++.   .+|+|++.||..+|+
T Consensus        76 ~~g~~~~A~-----~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~  147 (296)
T PRK11189         76 SLGLRALAR-----NDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGR  147 (296)
T ss_pred             HCCCHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC
Confidence            445555553     346666666554 35578999999999999999999999999999985   689999999999999


Q ss_pred             hhHHHhhhC
Q 023871          268 VPLLLALIE  276 (276)
Q Consensus       268 ~~eAI~aLE  276 (276)
                      +++|++.++
T Consensus       148 ~~eA~~~~~  156 (296)
T PRK11189        148 YELAQDDLL  156 (296)
T ss_pred             HHHHHHHHH
Confidence            999998763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.05  E-value=1.3e-05  Score=66.73  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .-|.++-++...  .++..|..+++.|+|++|+..|++++.++|++.   .+|+|++.|+.++|++++|+..+
T Consensus        14 ~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y   81 (144)
T PRK15359         14 DILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---RAHIALAGTWMMLKEYTTAINFY   81 (144)
T ss_pred             HHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence            456666666555  366789999999999999999999999999996   68999999999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=1.1e-05  Score=55.11  Aligned_cols=83  Identities=23%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ......|++++++..++.     ..++...- .-++..|..++..++|++|+..|++++.+.|.+.   .++++++.||.
T Consensus         8 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~   79 (100)
T cd00189           8 NLYYKLGDYDEALEYYEK-----ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHhcHHHHHHHHHH-----HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHH
Confidence            334456666666544433     22222221 3467888888999999999999999999888875   57899999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|+++.|+..+
T Consensus        80 ~~~~~~~a~~~~   91 (100)
T cd00189          80 KLGKYEEALEAY   91 (100)
T ss_pred             HHHhHHHHHHHH
Confidence            999999988765

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.03  E-value=2.1e-05  Score=56.59  Aligned_cols=66  Identities=21%  Similarity=0.474  Sum_probs=51.0

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhccc-CceEEEE
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKM  165 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~-gpv~L~l  165 (276)
                      .|+|+.+....+++++|..|.+++.|+++| |++||+|+.+-..      +..+.  ..+...|+... .++.|++
T Consensus         1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGT------DVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            478999998877799999999999999988 9999999998543      23333  45666777655 5667665

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.01  E-value=2.9e-05  Score=61.43  Aligned_cols=79  Identities=14%  Similarity=0.120  Sum_probs=62.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++++..++.     .-++... .+.++..|..+++.|+|++|+..|++++.++|++.   ..||++|-||.++|+
T Consensus        29 ~~~~~~~A~~~~~~-----~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~  100 (135)
T TIGR02552        29 QQGRYDEALKLFQL-----LAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP---RPYFHAAECLLALGE  100 (135)
T ss_pred             HcccHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC
Confidence            56777777655543     2222221 24467889999999999999999999999999985   589999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+..+
T Consensus       101 ~~~A~~~~  108 (135)
T TIGR02552       101 PESALKAL  108 (135)
T ss_pred             HHHHHHHH
Confidence            99998765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.01  E-value=5.6e-06  Score=81.14  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL  272 (276)
Q Consensus       211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI  272 (276)
                      |..+..+.+++||++|++|.|+|||++|.+++++.|.++   +.|-|+|..|.++..+-.|-
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---V~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---VYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---cchhhHHHHHHHHHHHHHHH
Confidence            344444566889999999999999999999999999875   78999999999998876553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.00  E-value=1.7e-05  Score=60.30  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +..+..|..+++.|+|++|+..|++++...|++.....++++++.||.+.|++++|+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   63 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL   63 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3467899999999999999999999999999876556789999999999999999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.95  E-value=3.1e-05  Score=77.54  Aligned_cols=57  Identities=21%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..++.|+.+|+.|+|++||..|++||.++|+.    ..|+|+|.||.++|++++||+.+
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~  183 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDT  183 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHH
Confidence            4455688999999999999999999999999974    57999999999999999999875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.94  E-value=1.9e-05  Score=62.48  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       205 Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |++.-++.... +..+..|..+++.|+|++|+..|++++.++|++.   .+|++++.||.+++++++|+..+
T Consensus         6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~   74 (135)
T TIGR02552         6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---RYWLGLAACCQMLKEYEEAIDAY   74 (135)
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555443 3456899999999999999999999999999985   68999999999999999999765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.88  E-value=6.1e-05  Score=65.28  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=51.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...|..+++.|+|++|+..|++++...|+.+....++++++.+|.++|++++|+..+
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            366777899999999999999999999998777889999999999999999999865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=97.87  E-value=0.0001  Score=53.95  Aligned_cols=74  Identities=24%  Similarity=0.532  Sum_probs=51.5

Q ss_pred             EEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCc
Q 023871           88 EVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP  160 (276)
Q Consensus        88 ~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gp  160 (276)
                      .+++.|   ++|+.+.....  .+++|..|.+++.|+++| +++||+|+.+-..      +..+.-  .....++....+
T Consensus         4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~------~v~~~~~~~~~~~~~~~~~~   76 (85)
T smart00228        4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGT------SVEGLTHLEAVDLLKKAGGK   76 (85)
T ss_pred             EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCe
Confidence            444444   48888887644  689999999999999999 9999999998652      222221  122233333348


Q ss_pred             eEEEEeec
Q 023871          161 LLMKMQKR  168 (276)
Q Consensus       161 v~L~l~R~  168 (276)
                      +.|.+.|+
T Consensus        77 ~~l~i~r~   84 (85)
T smart00228       77 VTLTVLRG   84 (85)
T ss_pred             EEEEEEeC
Confidence            88888875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=97.85  E-value=4.5e-05  Score=57.53  Aligned_cols=67  Identities=21%  Similarity=0.384  Sum_probs=50.6

Q ss_pred             ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh--cccCceEEEEeec
Q 023871           95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air--~r~gpv~L~l~R~  168 (276)
                      ||+.|....+ ++++|.+|.+++.|+++| |++||+|+++-..   .+   .+.......+.  ....++.|++.|.
T Consensus         3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v---~~~~~~~~~l~~~~~g~~v~l~v~R~   72 (82)
T PF13180_consen    3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGK---PV---NSSEDLVNILSKGKPGDTVTLTVLRD   72 (82)
T ss_dssp             -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTE---ES---SSHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred             ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCE---Ec---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            6889988765 699999999999999999 9999999997653   22   44455555553  3356789999994

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.84  E-value=3e-05  Score=49.05  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      +.|+..|..++.+|+|++|+..|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=2.4e-05  Score=75.89  Aligned_cols=60  Identities=22%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      +++.-+++||.+|+.++|..|+.+|++.|..+-.++.. +++|.|+|+|+.-+|++..||.
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~  140 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALN  140 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44455589999999999999999999999665444444 8999999999999999999885

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=1.6e-05  Score=80.30  Aligned_cols=55  Identities=22%  Similarity=0.281  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      ++.++.||++|..|+|+.||..|+.||.++|.+   .++|.|+..||++++++++|+.
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~   57 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALK   57 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHH
Confidence            456789999999999999999999999999997   4899999999999999999986

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.79  E-value=6.7e-05  Score=65.04  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      -..|+++.++..+++     ..+...    ..+.++..|..+++.|+|++|+..|++++...|++.+...++|+++-||.
T Consensus        44 ~~~~~~~~A~~~~~~-----~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        44 LDSGDYTEAIKYFEA-----LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             HHcCCHHHHHHHHHH-----HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            366777777554443     222221    11235677777777888888888888888777777665567777777776


Q ss_pred             hc
Q 023871          264 KL  265 (276)
Q Consensus       264 KL  265 (276)
                      ++
T Consensus       119 ~~  120 (235)
T TIGR03302       119 NQ  120 (235)
T ss_pred             Hh
Confidence            54

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.76  E-value=0.00018  Score=59.16  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=52.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +..|..++..|+|++|+..|+.+++..|++.-...+++++|.|+..+|++++|+..|+
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~  109 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQ  109 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4788889999999999999999998888876667899999999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.76  E-value=0.00011  Score=49.97  Aligned_cols=55  Identities=33%  Similarity=0.404  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..++..|+|++|+..|++++...|++.   .++++++.||..++++++|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~   57 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDY   57 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999885   68999999999999999999876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.75  E-value=1.6e-05  Score=82.42  Aligned_cols=99  Identities=22%  Similarity=0.288  Sum_probs=83.4

Q ss_pred             cccccchHH--HHHHhh----------cCCCcchhHHHHHH--HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHH
Q 023871          174 QTGELSEKE--IIRAER----------NSGVISNRVREIQM--QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKF  238 (276)
Q Consensus       174 ~~~~~~e~~--~~~~~r----------~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Y  238 (276)
                      ..|+|.|+-  -.+|-+          |+|.+=++--||+.  ++|.++-+|+.-.-++ ++-||.+-..+.|++|+.+|
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence            456677664  246655          67777666667776  8899999999887665 69999999999999999999


Q ss_pred             HHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          239 ESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       239 e~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+||.+-|++.   ++|.|+||.|..+|++|.||+..
T Consensus       276 ~rAl~lrpn~A---~a~gNla~iYyeqG~ldlAI~~Y  309 (966)
T KOG4626|consen  276 LRALNLRPNHA---VAHGNLACIYYEQGLLDLAIDTY  309 (966)
T ss_pred             HHHHhcCCcch---hhccceEEEEeccccHHHHHHHH
Confidence            99999999994   79999999999999999999865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.71  E-value=3.9e-05  Score=57.47  Aligned_cols=48  Identities=31%  Similarity=0.493  Sum_probs=41.2

Q ss_pred             HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+|++||..|+++++.+|++. ....+|++|-||.++|++++|+..|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~   48 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELL   48 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36899999999999999999643 3468999999999999999999876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.71  E-value=9.7e-05  Score=64.50  Aligned_cols=61  Identities=10%  Similarity=0.015  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+..+..+.-|..|+..|+|++|...|+-...++|.+.   .-|||.+.|+-.+|+|++||++.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---~y~~gLG~~~Q~~g~~~~AI~aY   92 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---DYWFRLGECCQAQKHWGEAIYAY   92 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence            34567778999999999999999999999999999996   57999999999999999999875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.70  E-value=3.4e-05  Score=50.51  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             HHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       237 ~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      .|++||+++|++.   .+|+|.|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~---~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNA---EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCH---HHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999996   699999999999999999974

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=97.68  E-value=0.00015  Score=73.30  Aligned_cols=89  Identities=22%  Similarity=0.416  Sum_probs=69.7

Q ss_pred             ccccceEEEEecC---c-ceeEEee----eCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc-cCCcceecccchhHH
Q 023871           81 EEKYEEYEVEIEQ---P-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTM  151 (276)
Q Consensus        81 ~~~~~~y~V~l~K---P-LGl~f~e----~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~-fGdevw~a~~~g~~~  151 (276)
                      -|..+-++|+|.=   | |||.+--    ..||||||.+|.+||.-++.|.|.+||.|+.|..+ |+.  ..-++-=+++
T Consensus       245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN--mSNd~AVrvL  322 (626)
T KOG3571|consen  245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN--MSNDQAVRVL  322 (626)
T ss_pred             ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhh--cCchHHHHHH
Confidence            3567888888863   5 9988743    36889999999999999999999999999999875 552  1222223667


Q ss_pred             HHhhcccCceEEEEeecCCC
Q 023871          152 YTIRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~~~~  171 (276)
                      .-|-++.||+.|...+++-+
T Consensus       323 REaV~~~gPi~ltvAk~~DP  342 (626)
T KOG3571|consen  323 REAVSRPGPIKLTVAKCWDP  342 (626)
T ss_pred             HHHhccCCCeEEEEeeccCC
Confidence            66678999999999998764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.66  E-value=8.2e-05  Score=46.41  Aligned_cols=33  Identities=36%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      +-++..|..+++.|+|++|+..|++||.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            457889999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.59  E-value=0.00046  Score=56.30  Aligned_cols=55  Identities=22%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|..++..|+|++|+..|++++...+. .....+++|++.||..+|++++|+..+
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555555555555555555543221 111245666666777777766666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.59  E-value=0.00034  Score=59.02  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=59.1

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC  261 (276)
                      .....|++++++..+++     +.++..    ....++..|..+++.|+|++|+..|++||.+.|++.   .++++++.|
T Consensus        44 ~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~  115 (172)
T PRK02603         44 SAQADGEYAEALENYEE-----ALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP---SALNNIAVI  115 (172)
T ss_pred             HHHHcCCHHHHHHHHHH-----HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence            34477999998766665     322221    134567999999999999999999999999999985   679999999


Q ss_pred             HHhcCCh
Q 023871          262 YSKLNQV  268 (276)
Q Consensus       262 yaKLgq~  268 (276)
                      |..+++.
T Consensus       116 ~~~~g~~  122 (172)
T PRK02603        116 YHKRGEK  122 (172)
T ss_pred             HHHcCCh
Confidence            9998884

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.58  E-value=0.00018  Score=62.83  Aligned_cols=65  Identities=20%  Similarity=0.134  Sum_probs=58.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          202 MQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       202 ~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+-|+..++|+-+       |..+.+.|+.++||+.|.+||.++|+..   .+|.|+|-.|-.+|+.++|++.|+
T Consensus        37 ~~~~e~S~~LEl~-------~valaE~g~Ld~AlE~F~qal~l~P~ra---SayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELK-------AIALAEAGDLDGALELFGQALCLAPERA---SAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHH-------HHHHHhccchHHHHHHHHHHHHhcccch---HhhccHHHHHHHcCChHHHHHHHH
Confidence            3678888887755       6899999999999999999999999985   789999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=97.57  E-value=0.00013  Score=72.87  Aligned_cols=71  Identities=17%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..++++-++...- +-+...|..+...|+|++|+..|++||+++|++.   .+|++.+.+|..+|++++|+..++
T Consensus       325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3344555554432 2345678888899999999999999999999996   579999999999999999998764

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.54  E-value=0.00025  Score=65.37  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.-+++.|..+...|++++|+..|++||+++|++.   .+|+|++..|..+|++++|++++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~  121 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---DAYNYLGIYLTQAGNFDAAYEAF  121 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence            34578999999999999999999999999999986   68999999999999999999875

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.53  E-value=0.00031  Score=51.89  Aligned_cols=65  Identities=18%  Similarity=0.322  Sum_probs=47.4

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      +|+.|.. .+|++.|..|.+++.|+++| |++||+|+.+-..      +..++...+...+ ....+.|.+.|.
T Consensus         3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~------~v~~~~~~l~~~~-~~~~v~l~v~r~   67 (80)
T cd00990           3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGW------RVDALQDRLKEYQ-AGDPVELTVFRD   67 (80)
T ss_pred             ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCE------EhHHHHHHHHhcC-CCCEEEEEEEEC
Confidence            6888865 46789999999999999999 9999999998642      3333333343332 234678888773

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00022  Score=70.21  Aligned_cols=62  Identities=21%  Similarity=0.465  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C------CChhh-----HHHHHHHHhHHHHhcCChhHHHhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGS-K------PTPEE-----SSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-~------P~~~e-----~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +++..-+..||.+|+.|+|..|+..|++|+.. +      +++..     .-.+|.|+|.||.|++.|.+||.+
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            33344458999999999999999999999933 2      11111     156799999999999999999975

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.49  E-value=0.0013  Score=53.72  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +...|..++..|+|++|+..|++++..+|++.   .++++++.+|.++|++++|+..++
T Consensus       138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~  193 (234)
T TIGR02521       138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRP---ESLLELAELYYLRGQYKDARAYLE  193 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45678888999999999999999999999875   578999999999999999988663

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.49  E-value=0.00025  Score=62.03  Aligned_cols=61  Identities=23%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|..+++.|+|++|+..|++.+..-|+.+-...+++.+|-||.++|++++|+..+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~   65 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAY   65 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4556777888888888888888888888777777666677788888888888888877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.49  E-value=0.00031  Score=63.93  Aligned_cols=87  Identities=14%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             ccchHHH-HHHhh--cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          177 ELSEKEI-IRAER--NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       177 ~~~e~~~-~~~~r--~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      +.++.+. .++++  ..|++++++..++.  ..|... ..-.+  ..+.-|..+|+.++|++|+..|++.+...|++++.
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~--a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQ--VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            4577765 45555  78999999888777  445544 22222  25788999999999999999999999999999988


Q ss_pred             HHHHHHHhHHHHhcC
Q 023871          252 SVASYNVACCYSKLN  266 (276)
Q Consensus       252 a~A~YN~AcCyaKLg  266 (276)
                      ..++|.++-|+..++
T Consensus       106 ~~a~Y~~g~~~~~~~  120 (243)
T PRK10866        106 DYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHHHhhhhcc
Confidence            999999999987665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.48  E-value=0.00038  Score=61.23  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHH-HHcCC--HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaL-fk~gr--YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|.++.++...- +-+..-|..+ +..|+  +++|+..|++||..+|++.   .+++|.|.+|.++|++++|+..++
T Consensus        94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~---~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV---TALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5566666666653 3356778887 67787  5999999999999999996   589999999999999999998763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.47  E-value=0.00071  Score=56.62  Aligned_cols=83  Identities=16%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac  260 (276)
                      ..-+..|++++++..++.     +.++..    ....+++-|..+...|++++|+..|++||.++|++.   ..|.|++.
T Consensus        43 ~~~~~~g~~~~A~~~~~~-----al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~---~~~~~la~  114 (168)
T CHL00033         43 MSAQSEGEYAEALQNYYE-----AMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP---QALNNMAV  114 (168)
T ss_pred             HHHHHcCCHHHHHHHHHH-----HHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHH
Confidence            344477888888665554     433322    223567899999999999999999999999999886   35677777


Q ss_pred             HHH-------hcCChhHHHhhh
Q 023871          261 CYS-------KLNQVPLLLALI  275 (276)
Q Consensus       261 Cya-------KLgq~~eAI~aL  275 (276)
                      +|.       ++|++++|+..+
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHH
Confidence            777       888988776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.45  E-value=0.00035  Score=72.83  Aligned_cols=84  Identities=11%  Similarity=0.000  Sum_probs=53.4

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      .+.+...|.++++..     .+.++-++..+-.. .++.+..|++.+++++|+..++++|..+|++.   .+++++|.|.
T Consensus        93 a~i~~~~g~~~ea~~-----~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---~~~~~~a~~l  164 (694)
T PRK15179         93 ARALEAAHRSDEGLA-----VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---REILLEAKSW  164 (694)
T ss_pred             HHHHHHcCCcHHHHH-----HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHH
Confidence            477778899999844     44555555555433 34666666666666666666666666666664   4566666666


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|++++
T Consensus       165 ~~~g~~~~A~~~y  177 (694)
T PRK15179        165 DEIGQSEQADACF  177 (694)
T ss_pred             HHhcchHHHHHHH
Confidence            6666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.43  E-value=8.7e-05  Score=75.61  Aligned_cols=55  Identities=18%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |-+-|=+|.+..+++|||..|++||++.|.+   ..++||++.||..+|-+++|+..|
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhhhhHHHHHHHH
Confidence            4566666666677777777777777777766   378999999999999999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.38  E-value=0.00047  Score=74.41  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+-|..|.+.|++++|+..|++||+++|++.   .+++|+|.||..+|++++|+..++
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~---~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPDDP---ALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4666667777777777777777777777775   578888888888888888887663

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.37  E-value=0.00054  Score=63.51  Aligned_cols=86  Identities=16%  Similarity=0.206  Sum_probs=69.6

Q ss_pred             hcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          188 RNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       188 r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      ...|++++++..|+.  ..|-...   -..+..+--|..+|..|+|++|+..|.+++...|+.+....++|+++.||..+
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK  230 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence            356899999888777  2232221   01123468899999999999999999999999999888889999999999999


Q ss_pred             CChhHHHhhhC
Q 023871          266 NQVPLLLALIE  276 (276)
Q Consensus       266 gq~~eAI~aLE  276 (276)
                      |++++|+..|+
T Consensus       231 g~~~~A~~~~~  241 (263)
T PRK10803        231 GDTAKAKAVYQ  241 (263)
T ss_pred             CCHHHHHHHHH
Confidence            99999998763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.37  E-value=0.00043  Score=74.75  Aligned_cols=79  Identities=6%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             CCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871          190 SGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP  269 (276)
Q Consensus       190 ~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~  269 (276)
                      .|++++++     ..|.++.++....+.+++.|..+.+.|++++|+..|++||.++|++.   .+++|.+.++..+|+++
T Consensus       589 ~Gr~~eAl-----~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        589 PGQPELAL-----NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---NYQAALGYALWDSGDIA  660 (987)
T ss_pred             CCCHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHH
Confidence            35555553     34555555555555567889999999999999999999999999996   58999999999999999


Q ss_pred             HHHhhhC
Q 023871          270 LLLALIE  276 (276)
Q Consensus       270 eAI~aLE  276 (276)
                      +|++.++
T Consensus       661 eAi~~l~  667 (987)
T PRK09782        661 QSREMLE  667 (987)
T ss_pred             HHHHHHH
Confidence            9998763

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.36  E-value=0.0011  Score=49.25  Aligned_cols=66  Identities=24%  Similarity=0.477  Sum_probs=49.1

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcc-cCceEEEEeec
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR-VGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r-~gpv~L~l~R~  168 (276)
                      ||+.|.. ++++++|..|.+++.|+++| +++||+|+.+-..      +..+.  ..+...++.. ..++.|.+.|.
T Consensus         4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~------~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGE------PVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCE------EcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            7888865 46789999999999999998 9999999998643      22233  3445555543 45678999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00015  Score=72.07  Aligned_cols=66  Identities=20%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      |.--.+...++++.+.+|++.++..+|.+||..|+.|++++|++   +..|.|+|.||..++++++|+-
T Consensus        39 ~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~  104 (486)
T KOG0550|consen   39 YSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALG  104 (486)
T ss_pred             ccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhccc
Confidence            44445666788888999999999999999999999999999999   4679999999999999998863

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00016  Score=67.88  Aligned_cols=56  Identities=21%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      +++..+.||.+|..++|.+||+.|.+||.++|+..   .=|-|+|.||.|+.+|+.+..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~---~Y~tnralchlk~~~~~~v~~   65 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA---SYYTNRALCHLKLKHWEPVEE   65 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcc---hhhhhHHHHHHHhhhhhhhhh
Confidence            44556889999999999999999999999999995   347899999999999987643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.33  E-value=0.00037  Score=72.53  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChh-----------------------
Q 023871          194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE-----------------------  249 (276)
Q Consensus       194 ~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-----------------------  249 (276)
                      +.++-++....|+|+-++..-..+++ +-||+|-..|+..||.++|.+||.++|+..                       
T Consensus       298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly  377 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY  377 (966)
T ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence            55566666788999999998888876 889999999999999999999999999852                       


Q ss_pred             --------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          250 --------ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       250 --------e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                              +.+.++.|.|..|-++|++++||.+.
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y  411 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY  411 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence                    24677888888888888888888764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.23  E-value=0.0018  Score=58.97  Aligned_cols=63  Identities=19%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..++++..|..+++.|+|++|+..|++++...|..+....+.++.|-||.+++++++|+..+|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e   93 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID   93 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            345578999999999999999999999999999998778889999999999999999998764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.21  E-value=0.0012  Score=54.73  Aligned_cols=87  Identities=17%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHH---HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQ---KERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kel---kkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A  259 (276)
                      ..+-...|+.+++     .+.|.++-+.   ..++ +-.++-|-.+..+|+|++|+..+++++...|+++-...+++..|
T Consensus         8 A~a~d~~G~~~~A-----i~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    8 AWAHDSLGREEEA-----IPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             HHHHHhcCCHHHH-----HHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            4555678888888     5667777664   2333 45689999999999999999999999988888655567788899


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      -|...+|++++|++.|
T Consensus        83 l~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   83 LALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHCCCHHHHHHHH
Confidence            9999999999999865

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.20  E-value=0.0033  Score=52.14  Aligned_cols=60  Identities=18%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      -+|+.|-.+...|+.++||..|++||+..++......++-+.+.+|-.+|++++|+..|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~   62 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLE   62 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            357889999999999999999999998877777667899999999999999999998774

>PRK12370 invasion protein regulator; Provisional

Probab=97.18  E-value=0.00098  Score=66.64  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=50.8

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------------------------
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------------------------  250 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-------------------------------  250 (276)
                      ..|+++.++...- ..++..|..++..|+|++|+..|++|+.++|++..                               
T Consensus       359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p  438 (553)
T PRK12370        359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ  438 (553)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence            3455555555542 34567788888999999999999999999998521                               


Q ss_pred             -HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 -SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 -~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                       ...+++|.++||..+|++++|+..+
T Consensus       439 ~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        439 DNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence             0123667777777777777777654

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.16  E-value=0.0012  Score=49.18  Aligned_cols=58  Identities=19%  Similarity=0.378  Sum_probs=44.8

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      .+|++|.+|.+++.|+++| |+.||+|+.+...      +..+......++...  ..++.|++.|.
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~i~~~~~~~~~l~~~~~~~~i~l~v~r~   82 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGK------PVKSVADLRRALAELKPGDKVTLTVLRG   82 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            4589999999999999999 9999999998643      444555555556543  56789999874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.10  E-value=0.0012  Score=44.57  Aligned_cols=41  Identities=20%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac  260 (276)
                      -++.-|..+...|++++|+..|+++|+.+|++.   .+|++.+-
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~---~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP---EAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH---HHHHHhhh
Confidence            456788899999999999999999999999997   46776653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.08  E-value=0.0014  Score=68.37  Aligned_cols=81  Identities=16%  Similarity=0.058  Sum_probs=60.0

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      ..+.+++|+.+++..--......    +..+..|..|.+.|+|++|++.|+++|.-.|+..   .+|.+.|.++-+.|+.
T Consensus       132 ~~~~~eeA~~~~~~~l~~~p~~~----~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~---~~~~~~a~~l~~~G~~  204 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSGGSSSA----REILLEAKSWDEIGQSEQADACFERLSRQHPEFE---NGYVGWAQSLTRRGAL  204 (694)
T ss_pred             HhccHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCH
Confidence            45555566555554211111111    2224788889999999999999999999888775   6899999999999999


Q ss_pred             hHHHhhhC
Q 023871          269 PLLLALIE  276 (276)
Q Consensus       269 ~eAI~aLE  276 (276)
                      ++|+.+++
T Consensus       205 ~~A~~~~~  212 (694)
T PRK15179        205 WRARDVLQ  212 (694)
T ss_pred             HHHHHHHH
Confidence            99998864

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.08  E-value=0.0018  Score=55.84  Aligned_cols=86  Identities=16%  Similarity=0.334  Sum_probs=64.8

Q ss_pred             ccchHHHH-HHhh--cCCCcchhHHHHHH---HH-HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          177 ELSEKEII-RAER--NSGVISNRVREIQM---QN-YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       177 ~~~e~~~~-~~~r--~~G~i~~al~Eiq~---~n-Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      ++|+.+.. .++-  ..|+++.+.+.+..   .+ |..-. -+.|+    +-|-+.|+.++|++|++.|++=|.+.|+.+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL----~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQL----DLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHH----HHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            45666643 3333  67888888777776   11 11111 13333    778899999999999999999999999999


Q ss_pred             hHHHHHHHHhHHHHhcCC
Q 023871          250 ESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       250 e~a~A~YN~AcCyaKLgq  267 (276)
                      ....++|-++.||..+..
T Consensus        82 ~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   82 NVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CccHHHHHHHHHHHHHhh
Confidence            989999999999999876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.05  E-value=0.0014  Score=64.21  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=67.4

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      .+...+.|+++.++..++     +..++... .+.++..|..++..|+|++|+..|+++++..|++.   .+++.++.||
T Consensus        29 a~~~~~~~~~~~A~~~~~-----~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~  100 (899)
T TIGR02917        29 AKSYLQKNKYKAAIIQLK-----NALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN---QVLPLLARAY  100 (899)
T ss_pred             HHHHHHcCChHhHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh---hhHHHHHHHH
Confidence            455668999999955554     44444443 34567899999999999999999999999998875   4678899999


Q ss_pred             HhcCChhHHHhhhC
Q 023871          263 SKLNQVPLLLALIE  276 (276)
Q Consensus       263 aKLgq~~eAI~aLE  276 (276)
                      ..+|++++|+..++
T Consensus       101 ~~~g~~~~a~~~~~  114 (899)
T TIGR02917       101 LLQGKFQQVLDELP  114 (899)
T ss_pred             HHCCCHHHHHHhhc
Confidence            99999999998763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.02  E-value=0.0016  Score=60.45  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=54.5

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaL-fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..+++.|..| ++.|+|++|+..|++.+...|+......++|-++-+|..+|++++|+..+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f  203 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYF  203 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5578999998 77899999999999999999998766789999999999999999999865

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0013  Score=62.43  Aligned_cols=56  Identities=25%  Similarity=0.375  Sum_probs=47.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHc--------CCCChhh-------HHHHHHHHhHHHHhcCChhHHHhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLG--------SKPTPEE-------SSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~--------i~P~~~e-------~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .++||.||++|+|.||+++|..|+.        -+|-+++       ..-++.|-|-|+++.|++-++++.
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh  252 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH  252 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence            4899999999999999999999983        2465543       256799999999999999998864

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.01  E-value=0.0035  Score=68.00  Aligned_cols=55  Identities=22%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ...|..+...|+|++|+..|++||.++|++.   .++|++|.+|.++|++++|+..++
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~---~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSV---WLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3567778899999999999999999999986   479999999999999999998763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.98  E-value=0.0026  Score=65.26  Aligned_cols=55  Identities=18%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +...|..+.+.|+|++|+..|++|+.++|++.   .+++|.+.+|.++|++++|+..+
T Consensus       287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLP---YVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence            34667777888888888888888888888875   46778888888888888887765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.93  E-value=0.0025  Score=56.09  Aligned_cols=71  Identities=17%  Similarity=0.109  Sum_probs=57.9

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH-HhcCC--hhHHHhhhC
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VPLLLALIE  276 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy-aKLgq--~~eAI~aLE  276 (276)
                      ..++++-++... .+.|+.-|..+...|+|++|+..|++|+.++|++.   .++++.|.|+ ...|+  .++|++.|+
T Consensus        60 ~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         60 QALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---ELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            445565555544 46789999999999999999999999999999996   5899999984 77787  488887763

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=96.92  E-value=0.0035  Score=47.19  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      ..|+.|..|.+++.|+++| |++||+|+.+-.      ++..++......+...  ..++.|.+.|.
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing------~~v~~~~d~~~~l~~~~~g~~v~l~v~r~   68 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSING------TPITTLEDFMEALKPTKPGEVITVTVLPS   68 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECC------EEcCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4589999999999999999 999999999853      3555555566666643  45688888873

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.92  E-value=0.0021  Score=45.44  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      +.--..|++++++..++.     ..+... -.+-++..|..++..|+|++|+..|+++++++|+++
T Consensus         5 ~~~~~~g~~~~A~~~~~~-----~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQ-----ALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHH-----HHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHcCCHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            334467888888666665     222222 234567999999999999999999999999999974

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.91  E-value=0.0023  Score=65.65  Aligned_cols=82  Identities=11%  Similarity=-0.060  Sum_probs=58.8

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      +.+..|++++++     ..|++..++.... +.++..|..+...|++++|+..|++||+++|++.   .+|++++.+|..
T Consensus        85 ~~l~~g~~~~A~-----~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~---~a~~~la~~l~~  156 (656)
T PRK15174         85 SPLASSQPDAVL-----QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS---QIFALHLRTLVL  156 (656)
T ss_pred             hHhhcCCHHHHH-----HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHH
Confidence            334556666663     3444555544432 3356778888889999999999999999888885   478888888888


Q ss_pred             cCChhHHHhhh
Q 023871          265 LNQVPLLLALI  275 (276)
Q Consensus       265 Lgq~~eAI~aL  275 (276)
                      +|++++|+..+
T Consensus       157 ~g~~~eA~~~~  167 (656)
T PRK15174        157 MDKELQAISLA  167 (656)
T ss_pred             CCChHHHHHHH
Confidence            88888887754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.89  E-value=0.0026  Score=57.91  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=62.2

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHh
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSK  264 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaK  264 (276)
                      -...|+++.+...     |++.-++... ..-.+.-|..++..|++++|+..|+++|...|.+... ...|++.|.||..
T Consensus       124 ~~~~G~~~~A~~~-----~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         124 LEEAGQYDRAEEA-----ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHcCCHHHHHHH-----HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            3456666666433     3344333333 2334677889999999999999999999988865333 4568899999999


Q ss_pred             cCChhHHHhhhC
Q 023871          265 LNQVPLLLALIE  276 (276)
Q Consensus       265 Lgq~~eAI~aLE  276 (276)
                      +|++++|+..++
T Consensus       199 ~G~~~~A~~~~~  210 (355)
T cd05804         199 RGDYEAALAIYD  210 (355)
T ss_pred             CCCHHHHHHHHH
Confidence            999999998763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.89  E-value=0.0021  Score=59.85  Aligned_cols=72  Identities=24%  Similarity=0.225  Sum_probs=55.5

Q ss_pred             HHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+|+..+..+--+ .-+=|-=|+..|+|++|...|++||. +|.+++.+..|-|..-|-++.||.+.|-+.|
T Consensus        90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063          90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             HHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence            445555555555423 23445556788999999999999995 6888888899999999999999999987765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.002  Score=66.06  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+-|...-++++|++||..|++||.++|.+.   ..|.-++-||+.+|+++.||+.+
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~---~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA---STHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcChHHHHHHH
Confidence            46889999999999999999999999999996   57889999999999999999875

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.0025  Score=65.74  Aligned_cols=57  Identities=23%  Similarity=0.346  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCh---------------------------hh-HHHHHHHHhHHHHhcCChhHH
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------EE-SSVASYNVACCYSKLNQVPLL  271 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---------------------------~e-~a~A~YN~AcCyaKLgq~~eA  271 (276)
                      -+|..+|++|+|++|++.|...+...-++                           ++ .....||.||.++-.|+|.+|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence            45667999999999999999987544332                           12 256799999999999999999


Q ss_pred             HhhhC
Q 023871          272 LALIE  276 (276)
Q Consensus       272 I~aLE  276 (276)
                      ++.||
T Consensus       195 ~elL~  199 (652)
T KOG2376|consen  195 IELLE  199 (652)
T ss_pred             HHHHH
Confidence            99985

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.78  E-value=0.0062  Score=56.04  Aligned_cols=56  Identities=9%  Similarity=-0.122  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhh--HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e--~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..+..+.+.|+|++|+..|++++...|++..  ....+++++.+|.++|++++|+..+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            3444445566666666666666655554432  1334556666666777777766654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.77  E-value=0.005  Score=60.59  Aligned_cols=55  Identities=24%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ...+.-|.+.++|+.|+....+|..+.|++.   ..||..|-||.++|+++.|+.+|+
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4566667899999999999999999999995   689999999999999999998875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.75  E-value=0.0045  Score=60.64  Aligned_cols=55  Identities=16%  Similarity=0.153  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..+.+.|++++|+..|++++...|++.   .++++++.+|.++|++++|+..+
T Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~  793 (899)
T TIGR02917       739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDA---VLRTALAELYLAQKDYDKAIKHY  793 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCcCHHHHHHHH
Confidence            34455556666666666666666666666654   46777777777777777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.75  E-value=0.002  Score=40.33  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      +-++..|..+.++|+|++|+..|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            457788999999999999999999999999953

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.74  E-value=0.0017  Score=46.29  Aligned_cols=54  Identities=28%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTG-KYEVAREKFESVLGSKP  246 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P  246 (276)
                      ...|++++++     ..|+++.++... ..-+++.|..+++.| +|++|+..|++||+++|
T Consensus        14 ~~~~~~~~A~-----~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   14 FQQGDYEEAI-----EYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHTTHHHHHH-----HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHcCCHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3677888884     556666666654 345789999999999 79999999999999998

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.70  E-value=0.0037  Score=67.73  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      -+..|++++++.-++..        .......+..|..+.+.|+|++|+..|+++|+++|++.   .+++|++.+|..+|
T Consensus       583 l~~~G~~~eA~~~l~~~--------p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~---~a~~~la~~~~~~g  651 (1157)
T PRK11447        583 LRDSGKEAEAEALLRQQ--------PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA---DARLGLIEVDIAQG  651 (1157)
T ss_pred             HHHCCCHHHHHHHHHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCC
Confidence            34667777776555520        00111234556666777777777777777777777764   46777777777777


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|++.|
T Consensus       652 ~~~eA~~~l  660 (1157)
T PRK11447        652 DLAAARAQL  660 (1157)
T ss_pred             CHHHHHHHH
Confidence            777776654

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=96.65  E-value=0.0086  Score=43.78  Aligned_cols=56  Identities=21%  Similarity=0.481  Sum_probs=43.3

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~  168 (276)
                      .+.|..|.+++.|+++| |++||+|+.+...      +..++......+... ...+.|.+.|.
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~------~i~~~~~~~~~l~~~~~~~~~l~v~r~   69 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQ------KIKSWEDLVDAVQENPGKPLTLTVERN   69 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHHCCCceEEEEEEEC
Confidence            58999999999999999 9999999998653      455555566666554 45788888773

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.63  E-value=0.0086  Score=53.73  Aligned_cols=88  Identities=18%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             HHhhcCCCcchhHHHHHH----------------------HHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHH
Q 023871          185 RAERNSGVISNRVREIQM----------------------QNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVA  234 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~----------------------~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEA  234 (276)
                      ......|+.++++.-++.                      ..+.+.+++-+....        |..-|..++.+|+|++|
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            334578888888887777                      234444444443322        24567788999999999


Q ss_pred             HHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       235 I~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..|++++...|+++   ..+.+.|-++.+.|+.++|++..
T Consensus       234 l~~~~~~~~~~p~d~---~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  234 LEYLEKALKLNPDDP---LWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHHHHHSTT-H---HHHHHHHHHHT------------
T ss_pred             ccccccccccccccc---ccccccccccccccccccccccc
Confidence            999999999999997   57889999999999999998753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.59  E-value=0.0089  Score=54.79  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHcC---CCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          219 LREGLQLYRT-GKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       219 ~~eGnaLfk~-grYeEAI~~Ye~AL~i---~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+-|..+.+. |+|++|+..|++|+++   +........++-+.|.++++++++++|++.+|
T Consensus       118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e  179 (282)
T PF14938_consen  118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE  179 (282)
T ss_dssp             HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3445555556 8999999999999954   23333347788999999999999999998864

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.58  E-value=0.0068  Score=52.27  Aligned_cols=62  Identities=21%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..+++++|.++++.|+|++|+..|+....--|-.+-...+..+++-+|.+.+++++|+..++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~   71 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYD   71 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            35688999999999999999999999998888877667899999999999999999998764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.51  E-value=0.0072  Score=55.64  Aligned_cols=87  Identities=14%  Similarity=0.008  Sum_probs=63.7

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-HHHHHHHHhHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCY  262 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-~a~A~YN~AcCy  262 (276)
                      ......|++++++..++.     ..++... .+-+...|..++..|+|++|+..|++++...+.... ...++++++.+|
T Consensus        43 ~~~~~~~~~~~A~~~~~~-----al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~  117 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIE-----MLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY  117 (389)
T ss_pred             HHHHhcCChHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            444577888888666665     3333222 233567888889999999999999999975443322 246799999999


Q ss_pred             HhcCChhHHHhhhC
Q 023871          263 SKLNQVPLLLALIE  276 (276)
Q Consensus       263 aKLgq~~eAI~aLE  276 (276)
                      .+.|++++|+..++
T Consensus       118 ~~~g~~~~A~~~~~  131 (389)
T PRK11788        118 LKAGLLDRAEELFL  131 (389)
T ss_pred             HHCCCHHHHHHHHH
Confidence            99999999998763

>PRK15331 chaperone protein SicA; Provisional

Probab=96.50  E-value=0.005  Score=54.37  Aligned_cols=77  Identities=8%  Similarity=0.065  Sum_probs=59.6

Q ss_pred             cCCCcchhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          189 NSGVISNRVREIQM----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       189 ~~G~i~~al~Eiq~----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      ..|+++.|.+-||-    .+|.        .+=|+.-|-....+|+|++||..|.-|..++++++   ...|..+-||..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n--------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~agqC~l~  117 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYN--------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFFTGQCQLL  117 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---CccchHHHHHHH
Confidence            78888888888876    2222        11133444444667999999999999999999886   568999999999


Q ss_pred             cCChhHHHhhhC
Q 023871          265 LNQVPLLLALIE  276 (276)
Q Consensus       265 Lgq~~eAI~aLE  276 (276)
                      +|+.+.|..+++
T Consensus       118 l~~~~~A~~~f~  129 (165)
T PRK15331        118 MRKAAKARQCFE  129 (165)
T ss_pred             hCCHHHHHHHHH
Confidence            999999998874

>smart00028 TPR Tetratricopeptide repeats

Probab=96.38  E-value=0.0069  Score=34.21  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      .++..|..++..++|++|+..|++++.++|++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            35688999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.37  E-value=0.0071  Score=55.10  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|..+...|+|++|+..|++++++.|++.   .++++.+.+|..+|++++|+..|+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---~~~~~la~i~~~~g~~~eA~~~l~  172 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDA---WAVHAVAHVLEMQGRFKEGIAFME  172 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456677899999999999999999999995   579999999999999999998763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.0085  Score=62.74  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=58.7

Q ss_pred             HHHhhHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          203 QNYMKKKEQKERREQD-----LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~-----~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .+..--++|-+.+-.|     -+.+-.+|+..+|..++..|..-|.-=|.+.   ..+..+-|.||||++|.|.|.|++.
T Consensus       337 ~~~~t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~  416 (872)
T KOG4814|consen  337 ENFSTQMELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEV  416 (872)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4556667777776655     3788889999999999999999994444432   3388999999999999999999986


Q ss_pred             h
Q 023871          275 I  275 (276)
Q Consensus       275 L  275 (276)
                      .
T Consensus       417 ~  417 (872)
T KOG4814|consen  417 Y  417 (872)
T ss_pred             H
Confidence            5

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.35  E-value=0.0085  Score=57.42  Aligned_cols=69  Identities=20%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +.|-++-+|...---. .+++-++-++|.|+.||.--+.||.+||.+   +.+|.-+...|+-+|++++|+++
T Consensus       102 ~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y---skay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen  102 DKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY---SKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCcHHHHHHH
Confidence            4455555554332111 266666666777777777777777777666   35666677777777777776665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.31  E-value=0.013  Score=61.00  Aligned_cols=54  Identities=13%  Similarity=0.038  Sum_probs=27.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..|..+...|++++|+..|+++|++.|++.   .++++.+.++.+.++.++|+..|
T Consensus       120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049        120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQ---QYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHH
Confidence            3444444555555555555555555555553   24444555555555555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.28  E-value=0.012  Score=42.21  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      ..+++++++     ..+.+..++... ..-++..|..+++.|+|++|+..|+++|+.+|++...
T Consensus         7 ~~~~~~~A~-----~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    7 QQEDYEEAL-----EVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             hCCCHHHHH-----HHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            345555553     344555555444 3556799999999999999999999999999998754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.28  E-value=0.013  Score=54.49  Aligned_cols=93  Identities=19%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             cchHHHHHHhh----cCCCcchhHHHHHHH--HHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871          178 LSEKEIIRAER----NSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       178 ~~e~~~~~~~r----~~G~i~~al~Eiq~~--nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      +++...+++|-    ..|+++++....++.  .+--.-.  +.+.- .-++|-++.+++.|+.||.--.+||++.|.+. 
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-  168 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-  168 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-
Confidence            44555566666    568999987766661  1111111  11212 23899999999999999999999999999996 


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                        .|.--+|-.|.++.++++||+.+
T Consensus       169 --kAl~RRAeayek~ek~eealeDy  191 (271)
T KOG4234|consen  169 --KALERRAEAYEKMEKYEEALEDY  191 (271)
T ss_pred             --HHHHHHHHHHHhhhhHHHHHHHH
Confidence              67889999999999999999864

>PRK15331 chaperone protein SicA; Provisional

Probab=96.21  E-value=0.016  Score=51.21  Aligned_cols=58  Identities=12%  Similarity=0.081  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+..+.-|-.+|+.|+|++|...|.-..-.+|.+.++   |...|+||-.+++++.||++.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y   94 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---TMGLAAVCQLKKQFQKACDLY   94 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            4566789999999999999999999999999999765   899999999999999999863

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.039  Score=54.72  Aligned_cols=54  Identities=20%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+-+.-+-|+++|.+||.+-+++|+++|++.   .|+|-++.||+.+++++.|+..+
T Consensus       261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~---KALyRrG~A~l~~~e~~~A~~df  314 (397)
T KOG0543|consen  261 LNLAACYLKLKEYKEAIESCNKVLELDPNNV---KALYRRGQALLALGEYDLARDDF  314 (397)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHhhccHHHHHHHH
Confidence            3666777899999999999999999999996   79999999999999999999765

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.13  E-value=0.014  Score=60.99  Aligned_cols=72  Identities=21%  Similarity=0.319  Sum_probs=51.5

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhccc-CceEEEEeec
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~-gpv~L~l~R~  168 (276)
                      +|+.+.. .+|+++|..|.|||.|++++.|++||+|++|.. =|.++.+..+.  ..+...|+... ..|.|++.|.
T Consensus       246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~-~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ-DGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECC-CCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4777766 467899999999999999955999999999972 12334433322  25677787444 4568888874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.10  E-value=0.02  Score=50.17  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ..|++++++..+..  ..|-..... .  +..+.-|..+|+.|+|++|+..|++-+..-|+.+....++|.++-|+.++.
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a-~--~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYA-P--QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTH-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHH-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            77888888777666  222221111 1  124688999999999999999999999999999888899999999987763

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=96.09  E-value=0.011  Score=58.33  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=63.1

Q ss_pred             ccceEEEEecCcc---eeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           83 KYEEYEVEIEQPY---GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        83 ~~~~y~V~l~KPL---Gl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      ....+..++...+   |+.+...++|++.|.++.+|+-|+|+| |++||.|+.|-   |..+-... +..+...||.+.|
T Consensus        87 ~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id---G~~~~~~~-~~~av~~irG~~G  161 (406)
T COG0793          87 DAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID---GKSVGGVS-LDEAVKLIRGKPG  161 (406)
T ss_pred             HHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC---CEEccCCC-HHHHHHHhCCCCC
Confidence            3344555555554   478877666999999999999999999 99999999998   32222221 1345667776554


Q ss_pred             -ceEEEEeecCCCcccccccc
Q 023871          160 -PLLMKMQKRYGKMEQTGELS  179 (276)
Q Consensus       160 -pv~L~l~R~~~~~~~~~~~~  179 (276)
                       +|.|++.|.-+.-...-.++
T Consensus       162 t~V~L~i~r~~~~k~~~v~l~  182 (406)
T COG0793         162 TKVTLTILRAGGGKPFTVTLT  182 (406)
T ss_pred             CeEEEEEEEcCCCceeEEEEE
Confidence             67999999844433333344

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.06  E-value=0.015  Score=41.03  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             CCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHH
Q 023871          190 SGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS  255 (276)
Q Consensus       190 ~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~  255 (276)
                      .|++++|+..     |++.-+.... .+-++.-|..+++.|+|++|...+++++..+|+++.+..++
T Consensus         4 ~~~~~~A~~~-----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    4 QGDYDEAIEL-----LEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             TTHHHHHHHH-----HHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ccCHHHHHHH-----HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4566666444     4444444443 23356889999999999999999999999999987654443

...

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=96.02  E-value=0.023  Score=42.24  Aligned_cols=55  Identities=20%  Similarity=0.399  Sum_probs=41.6

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      |+.|..|.+++.|+. | |++||+|+.+-.      ++..++..+..++.. + ..++.|.+.|.
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~~~v~l~v~r~   65 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDG------KPFKEAEELIDYIQSKKEGDTVKLKVKRE   65 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            699999999998885 7 999999999854      355555556666663 3 44688888874

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=95.91  E-value=0.023  Score=53.69  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~  168 (276)
                      +|+.+.. .+++++|..|.+++.|+++| |++||+|+++...   .+-.. .+..+...++.. ..++.|++.|.
T Consensus        53 lG~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~---~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~  121 (334)
T TIGR00225        53 IGIQVGM-DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGK---SVAGM-SLDDAVALIRGKKGTKVSLEILRA  121 (334)
T ss_pred             EEEEEEE-ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHhccCCCCCEEEEEEEeC
Confidence            7888866 46799999999999999999 9999999998653   22110 122344444432 34678888775

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.85  E-value=0.005  Score=62.00  Aligned_cols=57  Identities=16%  Similarity=0.099  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +++..++++.+|+.+.|+.|+..|.+||+++||..   ..+.|+|..|.|.+.+..|+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca---~~~anRa~a~lK~e~~~~Al~D   60 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA---IYFANRALAHLKVESFGGALHD   60 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce---eeechhhhhheeechhhhHHHH
Confidence            34455788999999999999999999999999984   4577888888888887777653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.78  E-value=0.016  Score=57.33  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++-|++|+..|+|.+||.-|..|++.+|+++   .+.|.+|.+|+-+|+-..||..|
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y---~aifrRaT~yLAmGksk~al~Dl   95 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNY---QAIFRRATVYLAMGKSKAALQDL   95 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---HHHHHHHHHHhhhcCCccchhhH
Confidence            4889999999999999999999999999996   68999999999999998888766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.76  E-value=0.02  Score=51.46  Aligned_cols=61  Identities=15%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------------------------HHHHHHHHhHHHH
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------------------------SSVASYNVACCYS  263 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-------------------------------~a~A~YN~AcCya  263 (276)
                      ..-|+..|.-+.+.|++++|+..|++||.++|++.+                               ....|...|.||.
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~  225 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL  225 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence            344678888889999999999999999999999632                               0234566777777


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|+.++|+..+
T Consensus       226 ~lg~~~~Al~~~  237 (280)
T PF13429_consen  226 QLGRYEEALEYL  237 (280)
T ss_dssp             HHT-HHHHHHHH
T ss_pred             cccccccccccc
Confidence            777777777655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.034  Score=56.49  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=59.5

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-------------------------------h
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------E  250 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------------------------e  250 (276)
                      -.||++.+|++.- ..|--.|-+..++++-..||.+|..|+++||.|.                               .
T Consensus       351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn  430 (559)
T KOG1155|consen  351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN  430 (559)
T ss_pred             HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            4578888888875 5678899999999999999999999999999872                               1


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+..|--.+-||.|+++.++||.+.
T Consensus       431 DsRlw~aLG~CY~kl~~~~eAiKCy  455 (559)
T KOG1155|consen  431 DSRLWVALGECYEKLNRLEEAIKCY  455 (559)
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHH
Confidence            2345566677999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.71  E-value=0.038  Score=57.60  Aligned_cols=79  Identities=10%  Similarity=-0.043  Sum_probs=61.9

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|+.++++..++.     ..++... .+-++..|..+...|++++|+..|++||+++|++.   .+++..|-++.++++
T Consensus       371 ~~g~~~eA~~~l~~-----al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~l~~~~a~~al~~~~  442 (765)
T PRK10049        371 YSNDLPQAEMRARE-----LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---NLEVEQAWTALDLQE  442 (765)
T ss_pred             HcCCHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCC
Confidence            56777777665554     2221111 12346888888999999999999999999999996   489999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|...+
T Consensus       443 ~~~A~~~~  450 (765)
T PRK10049        443 WRQMDVLT  450 (765)
T ss_pred             HHHHHHHH
Confidence            99999876

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.63  E-value=0.022  Score=55.52  Aligned_cols=67  Identities=18%  Similarity=0.442  Sum_probs=48.6

Q ss_pred             ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCce
Q 023871           95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPL  161 (276)
Q Consensus        95 LGl~f~e~~-----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv  161 (276)
                      |||.+..-.           ..|++|.+|.+++.|+++| |++||+|+++-..      +..++.....++.. . ...+
T Consensus       236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~------~i~~~~~~~~~l~~~~~g~~v  308 (428)
T TIGR02037       236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGK------PISSFADLRRAIGTLKPGKKV  308 (428)
T ss_pred             CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEE
Confidence            788876532           3589999999999999999 9999999998642      34444444455543 2 3467


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|++.|.
T Consensus       309 ~l~v~R~  315 (428)
T TIGR02037       309 TLGILRK  315 (428)
T ss_pred             EEEEEEC
Confidence            8888874

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.53  E-value=0.043  Score=58.89  Aligned_cols=83  Identities=24%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             HHHhhcCCCcchhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871          184 IRAERNSGVISNRVREIQM----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A  259 (276)
                      .++=-+.|++..+++-+=.    +-|..       .--|+..|.=+-.+|.|++|+..|++||.++|++.   .+..-+|
T Consensus       421 a~al~~~~~~~~Al~~l~~i~~~~~~~~-------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~---D~Ri~La  490 (895)
T KOG2076|consen  421 ADALTNIGKYKEALRLLSPITNREGYQN-------AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL---DARITLA  490 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCccccc-------hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch---hhhhhHH
Confidence            4444466666666655444    22222       22467778888889999999999999999999996   4677889


Q ss_pred             HHHHhcCChhHHHhhhC
Q 023871          260 CCYSKLNQVPLLLALIE  276 (276)
Q Consensus       260 cCyaKLgq~~eAI~aLE  276 (276)
                      ..|.++|+.++|++.||
T Consensus       491 sl~~~~g~~EkalEtL~  507 (895)
T KOG2076|consen  491 SLYQQLGNHEKALETLE  507 (895)
T ss_pred             HHHHhcCCHHHHHHHHh
Confidence            99999999999999886

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=95.53  E-value=0.022  Score=58.20  Aligned_cols=73  Identities=22%  Similarity=0.396  Sum_probs=56.1

Q ss_pred             cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .-|||+++....++.++|+.|..||.++++|.+.+||.|.-+-.+   . ......-++...++.-.|++++++-=.
T Consensus       133 ~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi---~-v~~~~~~e~q~~l~~~~G~itfkiiP~  205 (542)
T KOG0609|consen  133 GEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGI---S-VANKSPEELQELLRNSRGSITFKIIPS  205 (542)
T ss_pred             CCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCe---e-cccCCHHHHHHHHHhCCCcEEEEEccc
Confidence            348999999877779999999999999999999999999988754   1 112234456667776668888876443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.52  E-value=0.025  Score=59.63  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             CCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871          190 SGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       190 ~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      .++++++.+|++.     ..++.. +..-|+..|-..-++++++.|...|...+.++|++.   .+|.|.+|.|.++++-
T Consensus       498 ~~~fs~~~~hle~-----sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~---eaWnNls~ayi~~~~k  569 (777)
T KOG1128|consen  498 NKDFSEADKHLER-----SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA---EAWNNLSTAYIRLKKK  569 (777)
T ss_pred             chhHHHHHHHHHH-----HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch---hhhhhhhHHHHHHhhh
Confidence            3555555555443     333333 346688889888999999999999999999999986   4899999999999988


Q ss_pred             hHHHhhh
Q 023871          269 PLLLALI  275 (276)
Q Consensus       269 ~eAI~aL  275 (276)
                      .+|-..|
T Consensus       570 ~ra~~~l  576 (777)
T KOG1128|consen  570 KRAFRKL  576 (777)
T ss_pred             HHHHHHH
Confidence            8776544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.50  E-value=0.039  Score=52.98  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=44.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +......|+|++|+..++++++..|++.   .+++-.+-+|.++|+|++|++.|
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~a~~~l  210 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSSLLDIL  210 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHHHHHHH
Confidence            4455778999999999999999999997   47778899999999999999665

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.50  E-value=0.025  Score=55.13  Aligned_cols=57  Identities=18%  Similarity=0.391  Sum_probs=44.1

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~  168 (276)
                      .|++|.+|.+++.|+++| +++||+|+.+...      +..++-....+|+.  ..+++.|.+.|.
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~------~V~s~~d~~~~l~~~~~g~~v~l~v~R~  420 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQ------PVSSVAELRKVLDRAKKGGRVALLILRG  420 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            589999999999999999 9999999998642      44444444555553  356789999885

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.47  E-value=0.021  Score=59.29  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=33.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      |..+.+.|++++||..|++|+-++|.++   ...|++|..+.-++++++|+.-||
T Consensus       530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~---l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  530 GRIQHQLKRKDKALQLYEKAIHLDPKNP---LCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhhcchHHHHHHHH
Confidence            4444455555555555555555555553   457777777888888888877765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.47  E-value=0.012  Score=36.87  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             HHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          252 SVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       252 a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.+|||++.||..++++++|+.+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~   25 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQ   25 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHH
Confidence            3689999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.46  E-value=0.0085  Score=39.06  Aligned_cols=28  Identities=29%  Similarity=0.264  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSK  245 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~  245 (276)
                      +.+-|+.+.+.|+|++|+..|++||.+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3567889999999999999999977544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.37  E-value=0.047  Score=51.30  Aligned_cols=61  Identities=31%  Similarity=0.378  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..|+++|++..+.|+|++|+..|++...--|..+....+....+-.|.|.+++++|+..+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~   94 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYI   94 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3566777777777777777777777777666766655667777777777777777777654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.33  E-value=0.067  Score=42.35  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      ..-+++|+.||...+.++||..+++||..-++.++...++--.+-.|.-.|++.+.++
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456999999999999999999999998888877666777777888888888888765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.31  E-value=0.028  Score=57.83  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871          195 NRVREIQMQNYMKKKEQKERREQDLREGLQL--YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL  272 (276)
Q Consensus       195 ~al~Eiq~~nYkk~Kelkkqae~~~~eGnaL--fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI  272 (276)
                      .-+.||++.+-.-+.++..+..-.++.|+-.  +-.|.|+.||++|+.||..+|+++   .+|--..+..+.-.+..+||
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~---~lWNRLGAtLAN~~~s~EAI  484 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY---LLWNRLGATLANGNRSEEAI  484 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH---HHHHHhhHHhcCCcccHHHH
Confidence            4567777777666666664333345555544  456999999999999999999996   67888899999999999999


Q ss_pred             hhh
Q 023871          273 ALI  275 (276)
Q Consensus       273 ~aL  275 (276)
                      .+.
T Consensus       485 sAY  487 (579)
T KOG1125|consen  485 SAY  487 (579)
T ss_pred             HHH
Confidence            874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.27  E-value=0.067  Score=50.19  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=53.4

Q ss_pred             cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      +.+.+.+++.-|++  +.|..-      ..-..-.+..+..+|+|+||....++||+.+|+++   .++.|+++|...+|
T Consensus       179 g~e~~~~A~y~f~El~~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~---d~LaNliv~~~~~g  249 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP---DTLANLIVCSLHLG  249 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH---HHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHhC
Confidence            55678888888877  222111      11122456677899999999999999999999997   48999999999999


Q ss_pred             ChhHHH
Q 023871          267 QVPLLL  272 (276)
Q Consensus       267 q~~eAI  272 (276)
                      +..+++
T Consensus       250 k~~~~~  255 (290)
T PF04733_consen  250 KPTEAA  255 (290)
T ss_dssp             -TCHHH
T ss_pred             CChhHH
Confidence            995544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.27  E-value=0.079  Score=53.70  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..+++.+++.+|++.|.+|+..+|+..   .+++|.|-.|.+.|+.++||..|
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~---~l~~~~a~all~~g~~~eai~~L  397 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNSP---LLQLNLAQALLKGGKPQEAIRIL  397 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHhcCChHHHHHHH
Confidence            4444677777777777888888888763   78999999999999999999876

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.024  Score=56.41  Aligned_cols=47  Identities=21%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHcC-CCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          224 QLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       224 aLfk~grYeEAI~~Ye~AL~i-~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      -.|.+|+|++|++.|+-+... +|+.    ..+-|.|||+--||++.+|-..
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~~~~~----el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKDDAPA----ELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccCCCCc----ccchhHHHHHHHHHHHHHHHHH
Confidence            348999999999999999953 3333    5899999999999999998654

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=95.20  E-value=0.062  Score=52.23  Aligned_cols=69  Identities=23%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             ceeEEeeeC--CC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-ccCceEEEEeec
Q 023871           95 YGLKFAKGR--DG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~--dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~gpv~L~l~R~  168 (276)
                      +|+.+....  +|   ++.|..|.+++.|+++| |++||+|++|...   .+=. .....+...++. ...++.|.+.|.
T Consensus        87 iG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~---~v~~-~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         87 VGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGT---STEG-LSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             EEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            566665432  22   89999999999999999 9999999998753   2210 011233444543 234678888774

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.12  E-value=0.13  Score=41.90  Aligned_cols=63  Identities=21%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             HHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          210 EQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       210 elkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++.+.-++. .-+..+...|+|++|+...++++.++|-++   .+|.-.-.||..+|+..+|+...
T Consensus        56 ~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E---~~~~~lm~~~~~~g~~~~A~~~Y  119 (146)
T PF03704_consen   56 RLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE---EAYRLLMRALAAQGRRAEALRVY  119 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H---HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHCcCHHHHHHHH
Confidence            3444443333 333445789999999999999999999987   58999999999999999998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10139 serine endoprotease; Provisional

Probab=95.10  E-value=0.044  Score=54.56  Aligned_cols=58  Identities=14%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .|++|..|.+++.|+++| +++||+|+.+..      ++...+-..+..|+.+.+++.|.+.|.-
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            389999999999999999 999999999864      3444444555566655578999998853

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.07  E-value=0.037  Score=52.98  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~  168 (276)
                      .|++|..|.+++.|+++| |++||+|+.+-.      ++..+......++..  ..+++.|++.|.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~  336 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDG------KDVIGAEELMDRIAETRPGSKVMVTVLRQ  336 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            589999999999999999 999999999854      234444444445543  245688888884

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]

Probab=95.05  E-value=0.059  Score=47.98  Aligned_cols=76  Identities=25%  Similarity=0.474  Sum_probs=54.0

Q ss_pred             EEEEecCc---ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           87 YEVEIEQP---YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        87 y~V~l~KP---LGl~f~e~--~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      -.|+|+|-   ||..+--+  -+--|||..|-|||-|++-|.++-||+|+.|..+-=    ....--.....++.-.|+|
T Consensus        92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsv----ege~hekavellkaa~gsv  167 (207)
T KOG3550|consen   92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV----EGEHHEKAVELLKAAVGSV  167 (207)
T ss_pred             ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceee----cchhhHHHHHHHHHhcCcE
Confidence            57888885   55544333  233899999999999999999999999999886411    1112223445667778999


Q ss_pred             EEEEe
Q 023871          162 LMKMQ  166 (276)
Q Consensus       162 ~L~l~  166 (276)
                      .|++.
T Consensus       168 klvvr  172 (207)
T KOG3550|consen  168 KLVVR  172 (207)
T ss_pred             EEEEe
Confidence            88764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.00  E-value=0.18  Score=46.26  Aligned_cols=92  Identities=14%  Similarity=0.128  Sum_probs=55.3

Q ss_pred             HHHHhhcC-CCcchhHHHHHH--HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHH
Q 023871          183 IIRAERNS-GVISNRVREIQM--QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVA  254 (276)
Q Consensus       183 ~~~~~r~~-G~i~~al~Eiq~--~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A  254 (276)
                      +.+.-.+. |++++++...+.  ..|..-. ......+. .+-|.-+.++|+|++|+..|+++....-+..    .....
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            34444566 888888655555  2233222 12222233 3455555889999999999999997654432    12344


Q ss_pred             HHHHhHHHHhcCChhHHHhhh
Q 023871          255 SYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+...||+..|++..|-.+|
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~  219 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKAL  219 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            668888999999998887665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.97  E-value=0.089  Score=49.54  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      +|+-=..||++.++.++|+.--.+..+    .+-|-..|..|-+.||.++|-.-|.+||++.|+++   ....|++--|.
T Consensus       107 gk~~~~~g~~~~A~~~~rkA~~l~p~d----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nNlgms~~  179 (257)
T COG5010         107 GKNQIRNGNFGEAVSVLRKAARLAPTD----WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANNLGMSLL  179 (257)
T ss_pred             HHHHHHhcchHHHHHHHHHHhccCCCC----hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc---hhhhhHHHHHH
Confidence            455556778888877777622221111    22344778888888888888888888888888876   46777777777


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ..|+.+.|...|
T Consensus       180 L~gd~~~A~~ll  191 (257)
T COG5010         180 LRGDLEDAETLL  191 (257)
T ss_pred             HcCCHHHHHHHH
Confidence            777777776654

>PRK10139 serine endoprotease; Provisional

Probab=94.95  E-value=0.053  Score=54.01  Aligned_cols=58  Identities=12%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      ..|++|.+|.+++.|+++| |++||+|+.+-..   .+-.   +......|.. + ...+.|++.|.
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~---~V~s---~~dl~~~l~~~~~g~~v~l~V~R~  348 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGK---PLNS---FAELRSRIATTEPGTKVKLGLLRN  348 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCE---ECCC---HHHHHHHHHhcCCCCEEEEEEEEC
Confidence            3589999999999999999 9999999998643   3433   3444444443 2 33577778773

>PLN02789 farnesyltranstransferase

Probab=94.89  E-value=0.081  Score=50.41  Aligned_cols=54  Identities=11%  Similarity=-0.119  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHcCCH--HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          218 DLREGLQLYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       218 ~~~eGnaLfk~grY--eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      |+.++..+.+.+++  +++++.++++|+++|++.   .+|++++-++.+++++++||+.
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---HAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhHHHHHHH
Confidence            34445555555542  566666666666666664   4677777777777777777664

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=0.025  Score=55.32  Aligned_cols=54  Identities=28%  Similarity=0.389  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .++.|--+|+.|+||+|+.+|+.||+.-.-.+   -.-||+|.||..-+|++.|++.
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqp---llAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---LLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHhhhhHHHHHHH
Confidence            36888889999999999999999998766554   4689999999999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.74  E-value=0.092  Score=49.19  Aligned_cols=69  Identities=14%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .|..|+.+..+.- ..|.-++.-..+.|+-+-|-+.|++||.++|++.   ..+-|=..-...+|++++|..-
T Consensus        56 ~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G---dVLNNYG~FLC~qg~~~eA~q~  125 (250)
T COG3063          56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG---DVLNNYGAFLCAQGRPEEAMQQ  125 (250)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc---chhhhhhHHHHhCCChHHHHHH
Confidence            3333444443332 2345666666777888888888888888888876   3677777777778888877653

>TIGR00540 hemY_coli hemY protein

Probab=94.69  E-value=0.096  Score=50.34  Aligned_cols=52  Identities=15%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +..+...|+|++|+..++..++..|++.   .+++-.+-+|..+|+|++|++.|+
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~  211 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIRSGAWQALDDIID  211 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5555678999999999999999999997   578889999999999999988763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.68  E-value=0.034  Score=57.83  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       205 Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+++-.+..+- +.|+--|....|+++||.|.--|++|++|+|.+.   +..+-+...|-++|+.|+|++.+
T Consensus       478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---vi~~~~g~~~~~~k~~d~AL~~~  546 (638)
T KOG1126|consen  478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---VILCHIGRIQHQLKRKDKALQLY  546 (638)
T ss_pred             HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---hHHhhhhHHHHHhhhhhHHHHHH
Confidence            33333333332 4556666666666666666666666666666652   44444555555555555555544

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=94.65  E-value=0.023  Score=47.35  Aligned_cols=31  Identities=29%  Similarity=0.673  Sum_probs=28.7

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa  135 (276)
                      |-||||+.|..|+.|+.+| ++.+|+|+-|..
T Consensus        58 D~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG   88 (124)
T KOG3553|consen   58 DKGIYVTRVSEGSPAEIAG-LRIHDKILQVNG   88 (124)
T ss_pred             CccEEEEEeccCChhhhhc-ceecceEEEecC
Confidence            5599999999999999999 999999999874

>PRK10898 serine endoprotease; Provisional

Probab=94.61  E-value=0.074  Score=51.14  Aligned_cols=57  Identities=21%  Similarity=0.353  Sum_probs=41.2

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      .|++|.+|.+++.|+++| |++||+|+.+-..   .+   .+....+..+.. + ...+.|++.|.
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~---~V---~s~~~l~~~l~~~~~g~~v~l~v~R~  337 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNK---PA---ISALETMDQVAEIRPGSVIPVVVMRD  337 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCE---Ec---CCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            599999999999999999 9999999997542   33   333333444442 2 34578888874

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=94.52  E-value=0.057  Score=58.89  Aligned_cols=51  Identities=33%  Similarity=0.654  Sum_probs=42.3

Q ss_pred             cceEEEEecCcce----eEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871           84 YEEYEVEIEQPYG----LKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (276)
Q Consensus        84 ~~~y~V~l~KPLG----l~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa  135 (276)
                      -+-..|+|.|==|    |+-+++ -|    ||||..|++||.|+..|.++.||+|+.|-.
T Consensus       932 pei~~vtL~KnnGmGLSIVAAkG-aGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG  990 (1629)
T KOG1892|consen  932 PEIITVTLKKNNGMGLSIVAAKG-AGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDG  990 (1629)
T ss_pred             CceEEEEEeccCCceEEEEeecc-CCccccceEEEEeccCCccccccccccCceeeeecC
Confidence            3568999999866    333554 23    999999999999999999999999998865

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=94.51  E-value=0.067  Score=57.47  Aligned_cols=64  Identities=23%  Similarity=0.304  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          207 KKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       207 k~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      +++++.+....++.+||-||..|++++|+..+..++..+|.+.   .+||-++-||-++|+.+.++.
T Consensus       131 ~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~  194 (895)
T KOG2076|consen  131 GKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---IAYYTLGEIYEQRGDIEKALN  194 (895)
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---hhHHHHHHHHHHcccHHHHHH
Confidence            3455666677788999999999999999999999999999996   699999999999999998875

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=94.46  E-value=0.14  Score=54.36  Aligned_cols=88  Identities=22%  Similarity=0.381  Sum_probs=63.2

Q ss_pred             ccccccceEEEEecC-c--ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           79 EQEEKYEEYEVEIEQ-P--YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        79 ~~~~~~~~y~V~l~K-P--LGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      .-.++.+-|.|+|+| +  .|..+--++.+  ..||-.+.++|-|.+.|.++|||+|+-+..-    --.-..-.+.+-.
T Consensus       892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGe----sTkgmtH~rAIel  967 (984)
T KOG3209|consen  892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGE----STKGMTHDRAIEL  967 (984)
T ss_pred             cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCc----ccCCCcHHHHHHH
Confidence            345667889999986 3  34444444444  8999999999999999999999999987642    1111233366778


Q ss_pred             hhcccCceEEEEeecCC
Q 023871          154 IRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       154 ir~r~gpv~L~l~R~~~  170 (276)
                      |++...-|.|.|.|..|
T Consensus       968 Ik~gg~~vll~Lr~g~g  984 (984)
T KOG3209|consen  968 IKQGGRRVLLLLRRGTG  984 (984)
T ss_pred             HHhCCeEEEEEeccCCC
Confidence            88877677777777543

>PLN02789 farnesyltranstransferase

Probab=94.43  E-value=0.08  Score=50.44  Aligned_cols=59  Identities=12%  Similarity=-0.050  Sum_probs=45.1

Q ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      ++.++-++..+ ...|..+|..+...|+|++||+.|+++|+++|++.   .||+++.-+..++
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~---sAW~~R~~vl~~~  189 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN---SAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch---hHHHHHHHHHHhc
Confidence            34444444444 34577888888888999999999999999999885   5899998887776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.43  E-value=0.1  Score=49.15  Aligned_cols=81  Identities=19%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             HHhhcCCCcchhHHHHHH-HH-HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          185 RAERNSGVISNRVREIQM-QN-YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~-~n-Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ++.+-.|+-+.++.=.+. -. |.+      ..+-....|..++..|+|.+|+..+.+|+.+.|++.   .+|.=.+.||
T Consensus        74 ~a~~~~G~a~~~l~~~~~~~~~~~~------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~---~~~~~lgaal  144 (257)
T COG5010          74 TALYLRGDADSSLAVLQKSAIAYPK------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW---EAWNLLGAAL  144 (257)
T ss_pred             HHHHhcccccchHHHHhhhhccCcc------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh---hhhhHHHHHH
Confidence            455556666666554444 11 222      222233478899999999999999999999999996   5899999999


Q ss_pred             HhcCChhHHHhh
Q 023871          263 SKLNQVPLLLAL  274 (276)
Q Consensus       263 aKLgq~~eAI~a  274 (276)
                      .++|+.++|-..
T Consensus       145 dq~Gr~~~Ar~a  156 (257)
T COG5010         145 DQLGRFDEARRA  156 (257)
T ss_pred             HHccChhHHHHH
Confidence            999999998543

>PRK10942 serine endoprotease; Provisional

Probab=94.42  E-value=0.083  Score=52.89  Aligned_cols=58  Identities=17%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      ..|++|..|.+++.|+++| |+.||+|+.+...      +..++.....++...  ...+.|.+.|.
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~------~V~s~~dl~~~l~~~~~g~~v~l~v~R~  369 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGK------PISSFAALRAQVGTMPVGSKLTLGLLRD  369 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            3599999999999999999 9999999998642      334444444444422  34578888774

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.13  Score=50.59  Aligned_cols=71  Identities=23%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             HHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          203 QNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .+..+++++.+++-+        -+-.|.-....|+|+.|+..++.+++.+|++-  ....--...||.++|+.++++.-
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHHHH
Confidence            334455555554422        36778888899999999999999999999973  23455567899999999998754


Q ss_pred             h
Q 023871          275 I  275 (276)
Q Consensus       275 L  275 (276)
                      |
T Consensus       272 L  272 (389)
T COG2956         272 L  272 (389)
T ss_pred             H
Confidence            3

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.39  E-value=0.22  Score=36.14  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHH
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A  254 (276)
                      .+--++..|++|+|++|...-+.+|+++|++.....+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4567889999999999999999999999999754333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.37  E-value=0.1  Score=55.89  Aligned_cols=52  Identities=12%  Similarity=0.119  Sum_probs=44.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      |..+..+|+|++|++.|+++|+.+|++++   +++-+|..|..+++.++|++.++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~---~l~gLa~~y~~~~q~~eAl~~l~  160 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPD---LISGMIMTQADAGRGGVVLKQAT  160 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHhhcCCHHHHHHHHH
Confidence            44556789999999999999999999964   55677999999999999998753

>PRK10942 serine endoprotease; Provisional

Probab=94.36  E-value=0.086  Score=52.77  Aligned_cols=59  Identities=17%  Similarity=0.357  Sum_probs=45.2

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~  170 (276)
                      .+++|.+|.+++.|+++| +++||+|+.+...   .+.   ++.....+++....++.|.+.|.-.
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~---~V~---s~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQ---PVK---NIAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---EcC---CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            389999999999999999 9999999998642   444   4444455555555788999988543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=94.33  E-value=0.14  Score=52.12  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .-|+-+-.+++|.+|+..|++||++-     ++++..+..+.|+|-.|.+.|++++|-..+
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~  306 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC  306 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH
Confidence            36778889999999999999999653     666777889999999999999999997765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.29  E-value=0.34  Score=39.80  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..++...+......+..+++..+-..++..+...|+..-...++..+|.++...|++++|+..|+
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~   72 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALE   72 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33455678889999999999999999999999999986557889999999999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.23  E-value=0.56  Score=45.13  Aligned_cols=88  Identities=14%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             HHHhhcCCCcchhHHHHHH-----------HHH-----hhHHHHHHHHHHH-----------HHHHHHHHHcCCHHHHHH
Q 023871          184 IRAERNSGVISNRVREIQM-----------QNY-----MKKKEQKERREQD-----------LREGLQLYRTGKYEVARE  236 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~-----------~nY-----kk~Kelkkqae~~-----------~~eGnaLfk~grYeEAI~  236 (276)
                      .++-...|+.+++.+.++.           ..|     .+..+..+..+.|           +..|..+.+.++|++|.+
T Consensus       270 A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~  349 (398)
T PRK10747        270 AEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL  349 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3455577888888887777           001     1112222222222           456778889999999999


Q ss_pred             HHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       237 ~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|++++++.|++.    .+.-.+.++.++|+.++|.++.
T Consensus       350 ~le~al~~~P~~~----~~~~La~~~~~~g~~~~A~~~~  384 (398)
T PRK10747        350 AFRAALKQRPDAY----DYAWLADALDRLHKPEEAAAMR  384 (398)
T ss_pred             HHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999985    4667899999999999998764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.18  E-value=0.043  Score=33.84  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             HHHHHHhHHHHhcCChhHHHhhhC
Q 023871          253 VASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       253 ~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+|++++.||.++|++++|+++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~   25 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFE   25 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH
Confidence            579999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.16  E-value=0.067  Score=32.66  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~  247 (276)
                      .+..|..+++.|++++|+..|++++..-|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            467788888888999999999888887776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.97  E-value=0.094  Score=47.30  Aligned_cols=49  Identities=24%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          216 EQDLREGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       216 e~~~~eGnaLfk~----------grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      +.+++-|.+|..+          ..|++||.+|++||.|+|+..   .|+||.+.+|+-++.
T Consensus        26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h---dAlw~lGnA~ts~A~   84 (186)
T PF06552_consen   26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH---DALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHh
Confidence            4456778777433          568999999999999999996   589999988887765

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.90  E-value=0.17  Score=36.71  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             HHHhhcCCCcchhHHHHHHHH--HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871          184 IRAERNSGVISNRVREIQMQN--YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGS  244 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~n--Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i  244 (276)
                      ...-+..|++++|+..+++.-  ++.-..-..+ +.-..+-|..+...|+|++|+..|++|+++
T Consensus        12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345568889999966666521  1111111122 344578899999999999999999999975

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.83  E-value=0.04  Score=54.08  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.+.+..|.+++||+.|++|+.++|...   ..|-++|-+|+||.++..||..+
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a---~l~~kr~sv~lkl~kp~~airD~  171 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELNPPLA---ILYAKRASVFLKLKKPNAAIRDC  171 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccCCchh---hhcccccceeeeccCCchhhhhh
Confidence            34556677778999999999999888884   67888888888888888888654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=93.79  E-value=0.33  Score=49.56  Aligned_cols=73  Identities=18%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             HHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCCh
Q 023871          203 QNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       203 ~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      ..|+++.++.++         +....+.+..+...++|++|+..|.++|++     .+++...+..+.|.|-||.+.|++
T Consensus       304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~  383 (508)
T KOG1840|consen  304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY  383 (508)
T ss_pred             HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence            667777777776         122346777778889999999999999954     234445577899999999999999


Q ss_pred             hHHHhhh
Q 023871          269 PLLLALI  275 (276)
Q Consensus       269 ~eAI~aL  275 (276)
                      ++|.+.+
T Consensus       384 ~ea~~~~  390 (508)
T KOG1840|consen  384 KEAEELY  390 (508)
T ss_pred             hHHHHHH
Confidence            9998765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.67  E-value=0.13  Score=52.07  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=44.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .|..+...|+|++|+..|++||+++|+.    .+|...+.+|...|+.++|++.++
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~ps~----~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLEMSW----LNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444457899999999999999999963    589999999999999999998763

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=93.66  E-value=0.24  Score=49.00  Aligned_cols=57  Identities=19%  Similarity=0.473  Sum_probs=43.8

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-CceEEEEeecC
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY  169 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~-gpv~L~l~R~~  169 (276)
                      ++.|.+|.+++.|+++| +++||+|+.+..      ++..++.+....++.+. .++.+.+.|.-
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g  279 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDG------QPLTQWQTFVTLVRDNPGKPLALEIERQG  279 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCCEEEEEEEECC
Confidence            58999999999999999 999999999854      35555555555665443 46788888754

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=93.65  E-value=0.15  Score=47.40  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-cc-CceEEEEeec
Q 023871           95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~-gpv~L~l~R~  168 (276)
                      +|+.-....+  -|+.|..+.+++-|++.| |+.||+|+.+-..      +..+....+..+.. +. ..+.|.++|.
T Consensus       179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~------~i~~~~~~~~~l~~~~~~~~v~l~V~R~  249 (259)
T TIGR01713       179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGL------DLRDPEQAFQALQMLREETNLTLTVERD  249 (259)
T ss_pred             EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence            4555433221  299999999999999999 9999999998753      34444444554453 23 4789999984

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=93.62  E-value=0.06  Score=56.38  Aligned_cols=43  Identities=33%  Similarity=0.695  Sum_probs=40.3

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~  136 (276)
                      +-.||.|+-++|=||||..|-+|+.|++.| |+.||+|+.|.-+
T Consensus       417 dSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v  459 (1027)
T KOG3580|consen  417 DSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV  459 (1027)
T ss_pred             CeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence            468999999999999999999999999999 9999999999875

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=93.52  E-value=0.12  Score=53.13  Aligned_cols=53  Identities=28%  Similarity=0.490  Sum_probs=41.1

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      ||+++.. ..|+..|..|.+||.|.++| |.+||+|+++...  +.-|.-...+..|
T Consensus       453 LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~--s~~l~~~~~~d~i  505 (558)
T COG3975         453 LGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI--SDQLDRYKVNDKI  505 (558)
T ss_pred             cceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc--cccccccccccce
Confidence            7888877 57799999999999999999 9999999999875  3334434444333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.51  E-value=0.093  Score=51.92  Aligned_cols=80  Identities=13%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          196 RVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       196 al~Eiq~~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .-.|+.+..|+|...+-.+--+ ..+-|+=.+..++|+-++.+|++||.+--++.+.+..|||+..+-.-.|++..|-.+
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc  417 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC  417 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence            3455666889998888777544 458888889999999999999999988777766788999999888888888777665


Q ss_pred             h
Q 023871          275 I  275 (276)
Q Consensus       275 L  275 (276)
                      +
T Consensus       418 f  418 (478)
T KOG1129|consen  418 F  418 (478)
T ss_pred             H
Confidence            4

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.46  E-value=0.16  Score=48.02  Aligned_cols=97  Identities=21%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             cccchHH--HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHH
Q 023871          176 GELSEKE--IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (276)
Q Consensus       176 ~~~~e~~--~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a  252 (276)
                      +.|+..|  ++--||.-=--+-+|+-....-+.+...+....-+.+ =-|+=+-..|+|+.|++.|+..|++||.+.   
T Consensus        57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---  133 (297)
T COG4785          57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---  133 (297)
T ss_pred             ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---
Confidence            4566555  4566775555566777777777888888877654444 567888899999999999999999999986   


Q ss_pred             HHHHHHhHHHHhcCChhHHHhhh
Q 023871          253 VASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       253 ~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++-|++..+.--|.++.|.+.+
T Consensus       134 Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785         134 YAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             HHHhccceeeeecCchHhhHHHH
Confidence            79999999999999988887643

>PRK11906 transcriptional regulator; Provisional

Probab=93.35  E-value=0.14  Score=51.64  Aligned_cols=54  Identities=17%  Similarity=0.030  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|..+.-.++++.|+..|++|+.++||..   .+||-.+..+..-|+.++|++.+|
T Consensus       343 ~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A---~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        343 IMGLITGLSGQAKVSHILFEQAKIHSTDIA---SLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHhhcCCccH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455666677889999999999999999995   789999999999999999998764

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=93.31  E-value=0.19  Score=53.44  Aligned_cols=71  Identities=21%  Similarity=0.377  Sum_probs=58.0

Q ss_pred             ecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        91 l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      ..-|.||+|.++.+--|-|..|.|..-|+|+. +++||+|+|+-.      .|+...-++-..++.-.|+|+.-.+|.
T Consensus       384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~------~pi~s~~q~~~~~~s~~~~~~~l~~~~  454 (1051)
T KOG3532|consen  384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINN------VPIRSERQATRFLQSTTGDLTVLVERS  454 (1051)
T ss_pred             ccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecC------ccchhHHHHHHHHHhcccceEEEEeec
Confidence            35699999999877799999999999999998 999999999864      366666666666677788887666663

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.20  E-value=0.16  Score=54.08  Aligned_cols=61  Identities=23%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh---------------------------------HHHHHHHHhHH
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------------------------------SSVASYNVACC  261 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e---------------------------------~a~A~YN~AcC  261 (276)
                      ..-++..|..+-..|.++||...|..||.++|++..                                 -..+||+.+|.
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            355788899999999999999999999999999610                                 15789999999


Q ss_pred             HHhcCChhHHHhhh
Q 023871          262 YSKLNQVPLLLALI  275 (276)
Q Consensus       262 yaKLgq~~eAI~aL  275 (276)
                      +-++|+.++|.+++
T Consensus       764 ~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  764 FKKLGDSKQAAECF  777 (799)
T ss_pred             HHHccchHHHHHHH
Confidence            99999999999875

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.97  E-value=0.056  Score=32.99  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=21.1

Q ss_pred             HHHHHhHHHHhcCChhHHHhhhC
Q 023871          254 ASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       254 A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      |+|++|.||.++|++++|++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~   24 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQ   24 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHH
Confidence            79999999999999999998763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.81  E-value=0.098  Score=32.49  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             HHHHHHhHHHHhcCChhHHHhhhC
Q 023871          253 VASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       253 ~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+|++++.||.++|++++|++.++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~   25 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFE   25 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            579999999999999999998763

...

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.67  E-value=0.15  Score=39.67  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCChh------hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          225 LYRTGKYEVAREKFESVLGSKPTPE------ESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       225 Lfk~grYeEAI~~Ye~AL~i~P~~~------e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..+.|+|.+|++...+.++......      ....+..|+|.++...|++++|+..|+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~   65 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALE   65 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3578999999998888886554332      347889999999999999999998874

>TIGR00054 RIP metalloprotease RseP

Probab=92.55  E-value=0.25  Score=48.60  Aligned_cols=58  Identities=12%  Similarity=0.267  Sum_probs=43.9

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeecC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRY  169 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~~  169 (276)
                      -++.|.+|.+++.|+++| +++||+|+.+...      +..++.++..+++.. ..++.+.++|.-
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~------~V~s~~dl~~~l~~~~~~~v~l~v~R~g  261 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGE------KLRSWTDFVSAVKENPGKSMDIKVERNG  261 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhCCCCceEEEEEECC
Confidence            378999999999999999 9999999998642      444555555566543 446888888754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.49  E-value=0.13  Score=52.73  Aligned_cols=67  Identities=13%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             HhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          205 YMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       205 Ykk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +.++-.|.++--+ -+.+|.-.|-+++|++|++-|++|+.++|++.   .+|-.+||...++++++++..-
T Consensus       383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~---~~~iQl~~a~Yr~~k~~~~m~~  450 (606)
T KOG0547|consen  383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA---YAYIQLCCALYRQHKIAESMKT  450 (606)
T ss_pred             HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444322 36889899999999999999999999999994   7888999999999999887654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.44  E-value=0.07  Score=54.66  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=46.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.||..|-.|+|+.|.+.|..||.-+..-   ..|+||+...|-++|++++|+++.
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc---~ealfniglt~e~~~~ldeald~f  547 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALNNDASC---TEALFNIGLTAEALGNLDEALDCF  547 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHcCchHH---HHHHHHhcccHHHhcCHHHHHHHH
Confidence            467888899999999999999999755444   358999999999999999999874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.34  E-value=0.82  Score=45.65  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=64.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~--~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      |-+|..|++++|+.-++..-  ..+..-+|...  .++.|..+.-+.+|++|...|.+-++...-..  +.-.|=.||||
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~--~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c~  350 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAI--ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAACL  350 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhc--cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHHH
Confidence            66778999999999888633  11122223322  46899999999999999999999998554432  34478899999


Q ss_pred             HhcCCh-------hHHHhhh
Q 023871          263 SKLNQV-------PLLLALI  275 (276)
Q Consensus       263 aKLgq~-------~eAI~aL  275 (276)
                      ..+++.       ++|.+.+
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~  370 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELF  370 (468)
T ss_pred             HhhccchhhhhhHHHHHHHH
Confidence            999999       7776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.07  E-value=1.1  Score=40.80  Aligned_cols=72  Identities=17%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ..|++.+..+....-..+-|.++|+.|+|++|+..|+.++..--.+   .-...+.-+..-|+.++|+.+..|..
T Consensus       166 ~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~  240 (247)
T PF11817_consen  166 EQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT  240 (247)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6677777766666667899999999999999999999996442222   22256788889999999999987753

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.95  E-value=0.52  Score=45.03  Aligned_cols=55  Identities=27%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChh-------------------------------hHHHHHHHHhHHHHhcCChhH
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQVPL  270 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------------------------e~a~A~YN~AcCyaKLgq~~e  270 (276)
                      |..|-..|+|++|++.|++.|+-||++.                               ..+.||.-.|--|.-.|+++.
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k  172 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK  172 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence            4456678999999999999999999871                               127789999999999999999


Q ss_pred             HHhhhC
Q 023871          271 LLALIE  276 (276)
Q Consensus       271 AI~aLE  276 (276)
                      |+-|||
T Consensus       173 A~fClE  178 (289)
T KOG3060|consen  173 AAFCLE  178 (289)
T ss_pred             HHHHHH
Confidence            998886

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=91.69  E-value=0.7  Score=47.08  Aligned_cols=55  Identities=20%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      -++.-|++|++.|++++||..-+..+.-+|+++   ..|+-.|-.|..+|+..+|..+
T Consensus       376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp---~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP---NGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCchHHHHHH
Confidence            357999999999999999999999999999986   3566666666666666555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.64  E-value=0.43  Score=45.09  Aligned_cols=57  Identities=23%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |=-|+.+|..|+|++|...|..+..--|+.+....+++-++.|...++|.++|-..|
T Consensus       182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl  238 (262)
T COG1729         182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATL  238 (262)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHH
Confidence            445677777788888888888887777777666677888888888888888776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=91.49  E-value=0.41  Score=51.34  Aligned_cols=46  Identities=17%  Similarity=0.109  Sum_probs=25.5

Q ss_pred             HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|++++|+..+++++  +|++.. ..+.-..|..|..+|+++.|++.+
T Consensus        80 ~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         80 WAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             HcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555555555555  222211 134444566777777777777765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.41  E-value=0.43  Score=47.89  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       226 fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |---.|+|||+.|.++|..+|++.   .+--|+|.||.|+.-++-+-+.|
T Consensus       162 YmR~HYQeAIdvYkrvL~dn~ey~---alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  162 YMRMHYQEAIDVYKRVLQDNPEYI---ALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhh---hhHHHHHHHHHhcchhhhHHHHH
Confidence            555789999999999999888874   56789999999999888765543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=91.26  E-value=0.29  Score=52.02  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=53.4

Q ss_pred             HHhhHHHHHHHHHH-HH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          204 NYMKKKEQKERREQ-DL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       204 nYkk~Kelkkqae~-~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|-|+-|+-++... +. --|+-.+..++|++|...++..|+++|=..   ..||+..||+.++++++.|+++.
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL---GTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch---hHHHhccHHHHHHhhhHHHHHHH
Confidence            36777777776521 11 112223556999999999999999999886   57999999999999999999863

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.19  E-value=0.33  Score=45.82  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|+-+..|++.|+|.+|...|..=+.-=|+..-...|+|=..-|+..+|++++|...+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f  201 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF  201 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH
Confidence            7899999999999999999999999999999877899999999999999999998753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.09  E-value=2.4  Score=37.05  Aligned_cols=58  Identities=12%  Similarity=0.002  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+.|.-+++.|++++|+..|.++.+-+.........+.|+.....-.++|......+
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i   96 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI   96 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3577777889999999999999999888777666667788888888888887765543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.00  E-value=0.44  Score=30.17  Aligned_cols=27  Identities=26%  Similarity=0.165  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGS  244 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i  244 (276)
                      +.+-|+.++..|+|++|+..|++|+++
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457788899999999999999999964

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.96  E-value=0.4  Score=47.89  Aligned_cols=57  Identities=19%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+|.-+...|+.++||+.|++|+....+-... ..++|.++.||.-+.+|++|.+..
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            467777888999999999999999766655544 778999999999999999998764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=90.84  E-value=0.42  Score=48.56  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=47.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL  272 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI  272 (276)
                      ..|.|+-+++.-....+..|..+...|++++|++.|++|+.++|.++.+  .|+--..-|+.++.++-++
T Consensus       441 ~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~--~~~~~~~f~~~~~~~~~~~  508 (517)
T PRK10153        441 QAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL--YWIENLVFQTSVETVVPYL  508 (517)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH--HHHHhccccccHHHHHHHH
Confidence            5566777777655555677888888999999999999999999998742  2222223444444444433

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=90.74  E-value=0.6  Score=49.88  Aligned_cols=81  Identities=25%  Similarity=0.484  Sum_probs=58.8

Q ss_pred             ccceEEEEe-cCcceeEEee-eCC--C-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhh
Q 023871           83 KYEEYEVEI-EQPYGLKFAK-GRD--G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIR  155 (276)
Q Consensus        83 ~~~~y~V~l-~KPLGl~f~e-~~d--G-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air  155 (276)
                      +..+..|.| .||.|.-|-- +.|  | -|||-.|.++|.|++.|.++.||.|+.|-..      |+.+-  -.|+..+.
T Consensus       647 pdk~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~------pV~GksH~~vv~Lm~  720 (984)
T KOG3209|consen  647 PDKELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGI------PVEGKSHSEVVDLME  720 (984)
T ss_pred             CccceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCe------eccCccHHHHHHHHH
Confidence            336677776 5788876643 223  3 8999999999999999999999999998763      22221  23444444


Q ss_pred             --cccCceEEEEeecC
Q 023871          156 --QRVGPLLMKMQKRY  169 (276)
Q Consensus       156 --~r~gpv~L~l~R~~  169 (276)
                        .|+|-|.|.+.|+.
T Consensus       721 ~AArnghV~LtVRRkv  736 (984)
T KOG3209|consen  721 AAARNGHVNLTVRRKV  736 (984)
T ss_pred             HHHhcCceEEEEeeee
Confidence              67999999998863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.72  E-value=0.2  Score=32.53  Aligned_cols=23  Identities=17%  Similarity=0.166  Sum_probs=19.7

Q ss_pred             HHHHHhHHHHhcCChhHHHhhhC
Q 023871          254 ASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       254 A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +|.|+|.+|.++|+|++|++.+|
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~   23 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYE   23 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHH
Confidence            58999999999999999998753

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.71  E-value=0.15  Score=52.29  Aligned_cols=70  Identities=19%  Similarity=0.306  Sum_probs=52.7

Q ss_pred             cchhHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          193 ISNRVREIQM-----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       193 i~~al~Eiq~-----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ++++++..||     +.-.|-+.+|..    .+-|.++.+.|+|++||..|+-.++..||-    .+-||.-.||.-.|+
T Consensus       253 fskaikfyrmaldqvpsink~~rikil----~nigvtfiq~gqy~dainsfdh~m~~~pn~----~a~~nl~i~~f~i~d  324 (840)
T KOG2003|consen  253 FSKAIKFYRMALDQVPSINKDMRIKIL----NNIGVTFIQAGQYDDAINSFDHCMEEAPNF----IAALNLIICAFAIGD  324 (840)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHH----hhcCeeEEecccchhhHhhHHHHHHhCccH----HhhhhhhhhheecCc
Confidence            3455555555     333333333333    378889999999999999999999999998    578999999998887


Q ss_pred             hhH
Q 023871          268 VPL  270 (276)
Q Consensus       268 ~~e  270 (276)
                      .+.
T Consensus       325 ~ek  327 (840)
T KOG2003|consen  325 AEK  327 (840)
T ss_pred             HHH
Confidence            654

>TIGR00054 RIP metalloprotease RseP

Probab=90.29  E-value=0.28  Score=48.26  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=39.3

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R  167 (276)
                      -+++|.+|.|++.|+++| +++||+|+.+-..   .+=..+++.   ..|....+++.+.+.|
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~---~v~~~~dl~---~~ia~~~~~v~~~I~r  183 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGN---KIPGFKDVR---QQIADIAGEPMVEILA  183 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCE---EcCCHHHHH---HHHHhhcccceEEEEE
Confidence            478899999999999999 9999999998653   222223333   2333223777777766

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=90.12  E-value=0.41  Score=50.44  Aligned_cols=76  Identities=20%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             cCcceeEEeeeCC--------C-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           92 EQPYGLKFAKGRD--------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        92 ~KPLGl~f~e~~d--------G-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ++|.++.|-..++        | .|||.+|...|=|++.|.|+.||+|+.+..+.-..|    .+-.+...|...-|.+.
T Consensus       197 ~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNm----SLtDar~LIEkS~GKL~  272 (1027)
T KOG3580|consen  197 PGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENM----SLTDARKLIEKSRGKLQ  272 (1027)
T ss_pred             CCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeeccc----cchhHHHHHHhccCceE
Confidence            4677877766543        2 799999999999999999999999999887654433    45556888888899999


Q ss_pred             EEEeecCCC
Q 023871          163 MKMQKRYGK  171 (276)
Q Consensus       163 L~l~R~~~~  171 (276)
                      |.+.|--+.
T Consensus       273 lvVlRD~~q  281 (1027)
T KOG3580|consen  273 LVVLRDSQQ  281 (1027)
T ss_pred             EEEEecCCc
Confidence            999997766

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=90.02  E-value=0.36  Score=47.74  Aligned_cols=56  Identities=11%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      ..+|.+|.|++-|+++| +++||+|+.+-..      +.++..+....+..+  ...+.+++.|.
T Consensus       127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~------~V~~~~~l~~~v~~~~~g~~v~v~v~R~  184 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGI------ETPDWDAVRLALVSKIGDESTTITVAPF  184 (449)
T ss_pred             CccccccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence            45799999999999999 9999999998653      444444333333322  23577777774

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=90.00  E-value=0.89  Score=46.43  Aligned_cols=52  Identities=17%  Similarity=0.152  Sum_probs=44.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.-+-..|+|++|+...++||+..|...+   .|+-+|.+|-..|++++|.+.+|
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~G~~~~Aa~~~~  252 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHAGDLKEAAEAMD  252 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence            44445789999999999999999999864   79999999999999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=89.89  E-value=0.16  Score=55.13  Aligned_cols=54  Identities=26%  Similarity=0.393  Sum_probs=37.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      --|.-|...|++.+|++.|.++-+.=-+.   ...|-|+|.||.-+|||-.||+..|
T Consensus       651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~---~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  651 GIGIVLAEKGRFSEARDIFSQVREATSDF---EDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             chhhhhhhccCchHHHHHHHHHHHHHhhC---CceeeeHHHHHHHHHHHHHHHHHHH
Confidence            34555667777777777777776322111   2468999999999999999998653

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=89.88  E-value=0.2  Score=53.27  Aligned_cols=48  Identities=25%  Similarity=0.641  Sum_probs=39.5

Q ss_pred             EEEEecC-----cceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871           87 YEVEIEQ-----PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (276)
Q Consensus        87 y~V~l~K-----PLGl~f~e~-~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa  135 (276)
                      -+|.|.|     ||-+.+--+ ..| ||||++|.||..|+..| ++-||++.-|..
T Consensus       537 RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNg  591 (1283)
T KOG3542|consen  537 RQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNG  591 (1283)
T ss_pred             eeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccc
Confidence            4666766     666676655 567 99999999999999999 999999998764

>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]

Probab=89.85  E-value=0.16  Score=53.41  Aligned_cols=58  Identities=22%  Similarity=0.424  Sum_probs=46.0

Q ss_pred             ccccccceEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871           79 EQEEKYEEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (276)
Q Consensus        79 ~~~~~~~~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~  136 (276)
                      -|.+.-+.-+|-|+|    +||+++-|+.=|    -|+|+-+..+|.|+++|++.+||+|+++..+
T Consensus       639 ~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~  704 (829)
T KOG3605|consen  639 HFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGT  704 (829)
T ss_pred             HhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCc
Confidence            344444555666766    788888886444    7889999999999999999999999998764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.24  E-value=1.1  Score=46.01  Aligned_cols=82  Identities=15%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             cCCCcchhHHHHHHH---HHh--hHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          189 NSGVISNRVREIQMQ---NYM--KKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~---nYk--k~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      +.+-+++.|-=-+.+   .|.  ..-++.|-+ |.+.--||=.--.++-|.|+..|.+||.++|+..   .+|-=+..=|
T Consensus       298 dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~---~aWTLmGHEy  374 (559)
T KOG1155|consen  298 DMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL---SAWTLMGHEY  374 (559)
T ss_pred             hHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh---HHHHHhhHHH
Confidence            555566666544441   222  233444444 4455667766666788899999999999999873   3444444444


Q ss_pred             HhcCChhHHHh
Q 023871          263 SKLNQVPLLLA  273 (276)
Q Consensus       263 aKLgq~~eAI~  273 (276)
                      .-+.+...||+
T Consensus       375 vEmKNt~AAi~  385 (559)
T KOG1155|consen  375 VEMKNTHAAIE  385 (559)
T ss_pred             HHhcccHHHHH
Confidence            44444444444

>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]

Probab=89.02  E-value=0.49  Score=43.88  Aligned_cols=32  Identities=34%  Similarity=0.633  Sum_probs=28.2

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG  138 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG  138 (276)
                      -++|.+|+|++-|+++| +++||.|+-+..+-+
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~s  171 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHS  171 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEeccccc
Confidence            68899999999999999 999999999666533

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.78  E-value=0.74  Score=47.86  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             HHHhh-cCCCcc----hhHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---
Q 023871          184 IRAER-NSGVIS----NRVREIQMQNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVAREKFESVLGSKPT---  247 (276)
Q Consensus       184 ~~~~r-~~G~i~----~al~Eiq~~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---  247 (276)
                      .+|-| =.|.+.    -+++..|+.|++.+.+--.|+-.        .++.|.-.|+.+.|.+|+.+|..+|+.-++   
T Consensus       370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence            35566 344443    46677788888888887777632        268899999999999999999999943332   


Q ss_pred             -hhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          248 -PEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       248 -~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                       ...-...+-|++..|-|++++++||..+
T Consensus       450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             cccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence             2212567999999999999999999864

>PRK10941 hypothetical protein; Provisional

Probab=88.65  E-value=0.86  Score=42.81  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.+.++|+.|+.+-+..|.+.|+++   .-+--++-+|.++|.+..|+..||
T Consensus       191 ~~~~~~~~~AL~~~e~ll~l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~  239 (269)
T PRK10941        191 LMEEKQMELALRASEALLQFDPEDP---YEIRDRGLIYAQLDCEHVALSDLS  239 (269)
T ss_pred             HHHcCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHH
Confidence            3566777777777777777777764   235556667777777777766654

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.51  E-value=0.95  Score=35.14  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          212 KERREQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      ..++-+...+|.++-+.|+|++||..|..|++
T Consensus         3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34445566888999999999999999999984

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=88.49  E-value=1.2  Score=42.96  Aligned_cols=69  Identities=26%  Similarity=0.522  Sum_probs=47.6

Q ss_pred             ecCcceeEEeeeC------C-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           91 IEQPYGLKFAKGR------D-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        91 l~KPLGl~f~e~~------d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      -+||||.-+-.+.      .     .||||..++|||=|+.+|.+.|-|.|+-|..+   ||- -..+.||-.++-.-+-
T Consensus       169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGI---EVa-GKTLDQVTDMMvANsh  244 (358)
T KOG3606|consen  169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI---EVA-GKTLDQVTDMMVANSH  244 (358)
T ss_pred             CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCE---Eec-cccHHHHHHHHhhccc
Confidence            3799997664431      2     39999999999999999999999999998764   221 2344555444443344


Q ss_pred             ceEE
Q 023871          160 PLLM  163 (276)
Q Consensus       160 pv~L  163 (276)
                      .+-+
T Consensus       245 NLIi  248 (358)
T KOG3606|consen  245 NLII  248 (358)
T ss_pred             ceEE
Confidence            4433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.29  E-value=1.3  Score=42.39  Aligned_cols=43  Identities=16%  Similarity=-0.022  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .-.+|...|++||.+||++.   .+.|-.|.-+...|++.+|+...
T Consensus       208 ~ta~a~~ll~~al~~D~~~i---ral~lLA~~afe~g~~~~A~~~W  250 (287)
T COG4235         208 MTAKARALLRQALALDPANI---RALSLLAFAAFEQGDYAEAAAAW  250 (287)
T ss_pred             ccHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHcccHHHHHHHH
Confidence            44555666666666666664   67888999999999999998754

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.65  E-value=3.4  Score=30.80  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVL  242 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL  242 (276)
                      .+..|++.-+.|+|++|+..|.+|+
T Consensus        11 li~~Av~~d~~g~~~eAl~~Y~~a~   35 (77)
T smart00745       11 LISKALKADEAGDYEEALELYKKAI   35 (77)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456677777899999998888876

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=87.51  E-value=1.8  Score=31.86  Aligned_cols=27  Identities=19%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      ..+.+|..+-+.|+|++|+..|.+|++
T Consensus         7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    7 ELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345778888899999999999999873

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.26  E-value=2.3  Score=36.82  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             HHHHhhHHHHHHHH--HHHHH-H----------HHHHHHcCCHHHHHHHHHHHH-------cCCCChhhH-HHHHHHHhH
Q 023871          202 MQNYMKKKEQKERR--EQDLR-E----------GLQLYRTGKYEVAREKFESVL-------GSKPTPEES-SVASYNVAC  260 (276)
Q Consensus       202 ~~nYkk~Kelkkqa--e~~~~-e----------GnaLfk~grYeEAI~~Ye~AL-------~i~P~~~e~-a~A~YN~Ac  260 (276)
                      .+.|+++++.-...  +++++ .          .-++..+|+|++||.+-+.||       ++.-+.... ..+-+|+|.
T Consensus        29 a~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~  108 (144)
T PF12968_consen   29 AASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAV  108 (144)
T ss_dssp             HHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence            48899999987763  44432 1          234568999999999999999       666776655 677899999


Q ss_pred             HHHhcCChhHHHhhh
Q 023871          261 CYSKLNQVPLLLALI  275 (276)
Q Consensus       261 CyaKLgq~~eAI~aL  275 (276)
                      ..--+|..++|+..+
T Consensus       109 Al~~~Gr~~eA~~~f  123 (144)
T PF12968_consen  109 ALEGLGRKEEALKEF  123 (144)
T ss_dssp             HHHHTT-HHHHHHHH
T ss_pred             HHHhcCChHHHHHHH
Confidence            999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>smart00028 TPR Tetratricopeptide repeats

Probab=87.26  E-value=0.47  Score=26.28  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             HHHHHHhHHHHhcCChhHHHhhh
Q 023871          253 VASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       253 ~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+|++++-||..++++++|+..+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~   24 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYY   24 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHH
Confidence            47899999999999999999865

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=87.15  E-value=1.4  Score=45.03  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      .+|..|++.|+|+..++.|+.||+.-.++-.. +.+|+...-.|..|++|+.|++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~   76 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALK   76 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence            78999999999999999999999988887554 7789999999999999999985

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=87.01  E-value=2.2  Score=40.32  Aligned_cols=74  Identities=18%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             HHHhhcCCCcchhHHHHHH---HH----HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHH
Q 023871          184 IRAERNSGVISNRVREIQM---QN----YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASY  256 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~---~n----Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~Y  256 (276)
                      .-.+=+.||+++|.+++..   ++    |.    .+.+    +.-+-+.|+.++|++|+...++=|.+-|+.++...++|
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~----~qa~----l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYS----EQAQ----LDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCccc----HHHH----HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            4445588899999887766   11    32    1222    37788899999999999999999999999999999999


Q ss_pred             HHhHHHHhc
Q 023871          257 NVACCYSKL  265 (276)
Q Consensus       257 N~AcCyaKL  265 (276)
                      =++.||...
T Consensus       113 lkgLs~~~~  121 (254)
T COG4105         113 LKGLSYFFQ  121 (254)
T ss_pred             HHHHHHhcc
Confidence            999987653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.94  E-value=0.61  Score=29.47  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.5

Q ss_pred             HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          252 SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       252 a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++.|+|.+|..+|++++|+..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~   25 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELL   25 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHH
Confidence            467999999999999999999865

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.90  E-value=1.2  Score=34.70  Aligned_cols=37  Identities=14%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-------CCCChh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLG-------SKPTPE  249 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~-------i~P~~~  249 (276)
                      ..+.....++.++-+.|+|++||.+|+.|++       ..||+.
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            3344456788899999999999999998873       467764

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.81  E-value=1.9  Score=45.68  Aligned_cols=158  Identities=18%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             cccccCcccCCEEEEeecc------cCCcceecccchhHHHHhh--cccCceEEE----------------------Eee
Q 023871          118 ADKTGMFQVGDKVLATSAV------FGTEIWPAAEYGRTMYTIR--QRVGPLLMK----------------------MQK  167 (276)
Q Consensus       118 A~k~G~i~vGD~l~~~Sa~------fGdevw~a~~~g~~~~air--~r~gpv~L~----------------------l~R  167 (276)
                      +-++| +=|||.+++++++      .|+++.....+.++||.+.  .+-.-+||.                      |.|
T Consensus       522 ~v~tg-~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrr  600 (794)
T KOG0276|consen  522 SVKTG-KWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRR  600 (794)
T ss_pred             heeec-eeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhc
Confidence            34566 7799999999995      7899999999999999988  555556663                      223


Q ss_pred             cCCCcccccccchHHH-HHHhh---cCCCcchhHHHH-----------HHHHHhhHHHHHHHH---HHHHHHHHHHHHcC
Q 023871          168 RYGKMEQTGELSEKEI-IRAER---NSGVISNRVREI-----------QMQNYMKKKEQKERR---EQDLREGLQLYRTG  229 (276)
Q Consensus       168 ~~~~~~~~~~~~e~~~-~~~~r---~~G~i~~al~Ei-----------q~~nYkk~Kelkkqa---e~~~~eGnaLfk~g  229 (276)
                      -+...+....-=+|++ -|.-|   ..|-.+++|.=-           |...|+-+.+|..++   ..|.+-|....+.+
T Consensus       601 d~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~  680 (794)
T KOG0276|consen  601 DLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAG  680 (794)
T ss_pred             cccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcc
Confidence            2222211111112221 22222   455555554311           113355555554444   23778888889999


Q ss_pred             CHHHHHHHHHHHHcCC--------CChhh---------HHHHHHHHh-HHHHhcCChhHHHhhhC
Q 023871          230 KYEVAREKFESVLGSK--------PTPEE---------SSVASYNVA-CCYSKLNQVPLLLALIE  276 (276)
Q Consensus       230 rYeEAI~~Ye~AL~i~--------P~~~e---------~a~A~YN~A-cCyaKLgq~~eAI~aLE  276 (276)
                      ++.-|-++|.+|-+.-        -.+.+         ......|.| .||.++|+++++++.|+
T Consensus       681 ~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  681 ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence            9999999999986543        22222         133377877 59999999999999874

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=86.47  E-value=2.8  Score=33.41  Aligned_cols=69  Identities=26%  Similarity=0.459  Sum_probs=41.4

Q ss_pred             ceeEEeeeCCCCeEEEEeCCCCCcc--------ccc-CcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEEE
Q 023871           95 YGLKFAKGRDGGTYIDAIAPGGSAD--------KTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMK  164 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~ggnA~--------k~G-~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L~  164 (276)
                      ||..|.-. +|+.-|..|-+|-+-.        +.| .|++||.|++|-..   +|=+..++...   +..+.| .|.|.
T Consensus         3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~---~v~~~~~~~~l---L~~~agk~V~Lt   75 (88)
T PF14685_consen    3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQ---PVTADANPYRL---LEGKAGKQVLLT   75 (88)
T ss_dssp             -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTE---E-BTTB-HHHH---HHTTTTSEEEEE
T ss_pred             cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCE---ECCCCCCHHHH---hcccCCCEEEEE
Confidence            78888887 6888899998874433        344 57899999998753   55555554433   344444 78999


Q ss_pred             EeecCC
Q 023871          165 MQKRYG  170 (276)
Q Consensus       165 l~R~~~  170 (276)
                      +.++.+
T Consensus        76 v~~~~~   81 (88)
T PF14685_consen   76 VNRKPG   81 (88)
T ss_dssp             EE-STT
T ss_pred             EecCCC
Confidence            999776

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=86.43  E-value=1.1  Score=47.23  Aligned_cols=50  Identities=12%  Similarity=-0.004  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhH
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPL  270 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~e  270 (276)
                      |+.-|+-.-..++|+|||.+|..||.++||+.   .+|+-.|.-.+++++++-
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhh
Confidence            56667766788999999999999999999984   345555555555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=86.27  E-value=3.1  Score=45.47  Aligned_cols=66  Identities=8%  Similarity=-0.035  Sum_probs=52.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      |++..+.-.+....+..|..+-++|++++|++.|+++|.++|++.   .+.-|.|--|+.. +.+.|++.
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---~aLNn~AY~~ae~-dL~KA~~m  171 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---EIVKKLATSYEEE-DKEKAITY  171 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHh-hHHHHHHH
Confidence            333333333333456777778899999999999999999999996   5899999999999 99999864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=86.17  E-value=3.4  Score=42.95  Aligned_cols=56  Identities=11%  Similarity=-0.054  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCh-----hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-----~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|..++..|++++|...+++++++....     .....++.+.|.++..+|++++|...+
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  596 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCA  596 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            44566677788888888888887542211     111234566777777777777776544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=86.16  E-value=1.8  Score=44.28  Aligned_cols=72  Identities=22%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-----------hhH----HHHHHHHhHHHHhcCC
Q 023871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-----------EES----SVASYNVACCYSKLNQ  267 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-----------~e~----a~A~YN~AcCyaKLgq  267 (276)
                      +|+.-.-.+.+-.+-++.+|-..|+++.|-.|+..|..||++|-+.           .++    +-.--.+..||+++++
T Consensus       164 ~~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk  243 (569)
T PF15015_consen  164 PNFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK  243 (569)
T ss_pred             CCcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC
Confidence            3444555666777777899999999999999999999999988543           233    2234567899999999


Q ss_pred             hhHHHhh
Q 023871          268 VPLLLAL  274 (276)
Q Consensus       268 ~~eAI~a  274 (276)
                      .+.|+..
T Consensus       244 pdlALnh  250 (569)
T PF15015_consen  244 PDLALNH  250 (569)
T ss_pred             CchHHHH
Confidence            9999864

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=86.11  E-value=1.1  Score=42.46  Aligned_cols=58  Identities=28%  Similarity=0.516  Sum_probs=42.8

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh-cccC-ceEEEEeecCCC
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK  171 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air-~r~g-pv~L~l~R~~~~  171 (276)
                      |++|..|.+++.|+++| ++.||+|+.+..      +++......+..+. .+.| .+.+++.|. |+
T Consensus       271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng------~~v~~~~~l~~~v~~~~~g~~v~~~~~r~-g~  330 (347)
T COG0265         271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNG------KPVASLSDLVAAVASNRPGDEVALKLLRG-GK  330 (347)
T ss_pred             ceEEEecCCCChHHHcC-CCCCCEEEEECC------EEccCHHHHHHHHhccCCCCEEEEEEEEC-CE
Confidence            59999999999999999 999999999875      23334443344333 2233 679999997 54

>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.04  E-value=0.94  Score=43.59  Aligned_cols=76  Identities=22%  Similarity=0.372  Sum_probs=57.4

Q ss_pred             EEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCceEEEEe
Q 023871           89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGPLLMKMQ  166 (276)
Q Consensus        89 V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gpv~L~l~  166 (276)
                      |.-.+-|||.+..+.-|++||..|.+|+=-++-..|+|||.|-++..   ..|.--+-|.  +.+.-| .|..+++|+|-
T Consensus       133 ~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNg---e~ivG~RHYeVArmLKel-~rge~ftlrLi  208 (334)
T KOG3938|consen  133 VKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAING---ESIVGKRHYEVARMLKEL-PRGETFTLRLI  208 (334)
T ss_pred             EecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcC---ccccchhHHHHHHHHHhc-ccCCeeEEEee
Confidence            34456799999998899999999999999998889999999988763   3444444443  344333 45788899886


Q ss_pred             ec
Q 023871          167 KR  168 (276)
Q Consensus       167 R~  168 (276)
                      -|
T Consensus       209 eP  210 (334)
T KOG3938|consen  209 EP  210 (334)
T ss_pred             cc
Confidence            65

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.92  E-value=8.5  Score=28.88  Aligned_cols=29  Identities=45%  Similarity=0.584  Sum_probs=14.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      ..|......++|++|+..+.+++...++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (291)
T COG0457         100 NLGLLLEALGKYEEALELLEKALALDPDP  128 (291)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence            44444445555555555555555544443

>TIGR00540 hemY_coli hemY protein

Probab=85.61  E-value=2.1  Score=41.22  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHH--HHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          220 REGLQLYRTGKYEVAREKFE--SVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye--~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .-|--+++.|+|++|...|+  .+++..|++..    +...+..+.++|+.++|.+.
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HHHHHHHHHHcCCHHHHHHH
Confidence            34666689999999999999  67788998853    44669999999999988764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.58  E-value=4  Score=31.51  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-------cCCCChh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVL-------GSKPTPE  249 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL-------~i~P~~~  249 (276)
                      +.+.+|+++-+.|+|++||.+|.+||       ..+||+.
T Consensus         8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~   47 (77)
T cd02683           8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEA   47 (77)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence            44577888889999999999988887       3467653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.46  E-value=1.8  Score=29.02  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH--HHHcCCCCh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFE--SVLGSKPTP  248 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye--~AL~i~P~~  248 (276)
                      +.|+.-|-.++..|+|++|+..|.  -+..++|+|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456677888899999999999954  666777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=85.35  E-value=7.2  Score=33.87  Aligned_cols=58  Identities=12%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc----CCCChh-----hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLG----SKPTPE-----ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~----i~P~~~-----e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++-+|....+.|-|++|-..|.+|++    |.|+..     ..+-+|--.+-.+.+||.+++++.+-
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA   78 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA   78 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            34667777799999999999999994    445432     12667888899999999999998763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.26  E-value=2  Score=40.37  Aligned_cols=45  Identities=22%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       229 grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|++|+-.|+...+..|...   ..+.-+|+|+..+|+|++|.+.|+
T Consensus       181 e~~~~A~y~f~El~~~~~~t~---~~lng~A~~~l~~~~~~eAe~~L~  225 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTP---KLLNGLAVCHLQLGHYEEAEELLE  225 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SH---HHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence            379999999999777666554   567789999999999999998773

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=85.22  E-value=1.3  Score=45.37  Aligned_cols=87  Identities=11%  Similarity=0.057  Sum_probs=65.7

Q ss_pred             cCCCcchhHHHHHH--HHHhhHHHHHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH---HHHHH
Q 023871          189 NSGVISNRVREIQM--QNYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASY  256 (276)
Q Consensus       189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqa-------e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~---a~A~Y  256 (276)
                      |.||-.-=+-+|.-  ++||+.-.|-.+.       ..+|--||+++-.++|+.||+.+.+-|.|.-+-.+.   ..+.|
T Consensus       240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw  319 (639)
T KOG1130|consen  240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW  319 (639)
T ss_pred             ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            66665544444443  8899877665543       235788999999999999999999999776554332   67788


Q ss_pred             HHhHHHHhcCChhHHHhhh
Q 023871          257 NVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       257 N~AcCyaKLgq~~eAI~aL  275 (276)
                      -.+..|..+|+.+.|+.-+
T Consensus       320 SLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  320 SLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHHHHHHhhhhHHHHHHHH
Confidence            8999999999999998654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.20  E-value=2  Score=41.58  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++.+.++.++...|++.+|...|..||+..|++.   .+..-.|.||...|+.++|-..|
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---~~~~~la~~~l~~g~~e~A~~iL  191 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---EAKLLLAECLLAAGDVEAAQAIL  191 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---hHHHHHHHHHHHcCChHHHHHHH
Confidence            34567999999999999999999999999999995   46777899999999999887665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=84.86  E-value=1  Score=45.66  Aligned_cols=53  Identities=8%  Similarity=0.040  Sum_probs=42.4

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGS  244 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae----~~~~eGnaLfk~grYeEAI~~Ye~AL~i  244 (276)
                      -...|++++++     ..|.++.+++..-.    .+++.|..+.++|++++|++.|++||++
T Consensus        85 L~~lGryeEAI-----a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         85 LFSKGRVKDAL-----AQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHcCCHHHHH-----HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34678888884     55666667666632    3789999999999999999999999987

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.63  E-value=6.7  Score=36.09  Aligned_cols=62  Identities=16%  Similarity=0.034  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCC----C------ChhhH-HHHHHHHhHHHHhcCChhHHHhh
Q 023871          213 ERREQDLREGLQLYRTG-KYEVAREKFESVLGSK----P------TPEES-SVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       213 kqae~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~----P------~~~e~-a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      .-.+-.++-|..+++.+ +|++|+.+.++|+++.    +      +..+. ...+.-+|.||...+..+....+
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka  106 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA  106 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            34455689999999999 9999999999999873    1      12222 67788999999998887654443

It is also involved in sporulation [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=84.09  E-value=4.8  Score=30.23  Aligned_cols=53  Identities=30%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ..+..+...+++++|+..+.+++...|+.  ....+++.+.+|...++++.|+..
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~  224 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEY  224 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHH
Confidence            33344556677777777777777666662  124677777777777777766654

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.64  E-value=6.3  Score=29.38  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      ..+..|...-+.|+|++|+..|..|++
T Consensus         8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e   34 (75)
T cd02656           8 ELIKQAVKEDEDGNYEEALELYKEALD   34 (75)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344667788888999999999998873

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.62  E-value=1.8  Score=34.11  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      .+.-|..+...|+|++|++.+-.++..+|++
T Consensus        25 r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   25 RYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3566666666677777777666666666655

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=83.54  E-value=8  Score=28.72  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-hhhH--HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPT-PEES--SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~-~~e~--a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+..|..||+.|+|=||-+..|.+-...|. ....  ..++.-.|.-|.+.|+.+-|...|
T Consensus         2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            568999999999999999999999955443 3333  334555566677888888887643

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=83.45  E-value=1.9  Score=43.11  Aligned_cols=67  Identities=15%  Similarity=0.320  Sum_probs=41.3

Q ss_pred             cceeEEeeeCCCCeEEEEeCC--------CCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEE
Q 023871           94 PYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM  165 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~--------ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l  165 (276)
                      |.||.+.   .-||+|.....        ++.|+++| |++||+|+.+-.   ..+...+++-..+...  ...++.|.+
T Consensus        97 ~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING---~~V~s~~DL~~iL~~~--~g~~V~LtV  167 (402)
T TIGR02860        97 SIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKING---EKIKNMDDLANLINKA--GGEKLTLTI  167 (402)
T ss_pred             EEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECC---EECCCHHHHHHHHHhC--CCCeEEEEE
Confidence            5566654   33666655432        35577778 999999999864   3454445544444333  245788888


Q ss_pred             eecC
Q 023871          166 QKRY  169 (276)
Q Consensus       166 ~R~~  169 (276)
                      .|.-
T Consensus       168 ~R~G  171 (402)
T TIGR02860       168 ERGG  171 (402)
T ss_pred             EECC
Confidence            7743

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.16  E-value=7.8  Score=37.42  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             HHHHhhcCCCcchhHHHHHH----HHHhhHHHHHHHH----HHHH--HHHHHHH----HcCCHHHHHHHHHHHHc-CCCC
Q 023871          183 IIRAERNSGVISNRVREIQM----QNYMKKKEQKERR----EQDL--REGLQLY----RTGKYEVAREKFESVLG-SKPT  247 (276)
Q Consensus       183 ~~~~~r~~G~i~~al~Eiq~----~nYkk~Kelkkqa----e~~~--~eGnaLf----k~grYeEAI~~Ye~AL~-i~P~  247 (276)
                      .+|+.|..+++|...-.+|.    .-..-+++.-++.    +++.  +-+.++-    ..+.+++|.=.|+.-=+ ..|+
T Consensus       127 Al~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T  206 (299)
T KOG3081|consen  127 ALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT  206 (299)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC
Confidence            58888888888888766665    2222222222221    2322  3444442    23679999999998886 6666


Q ss_pred             hhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          248 PEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       248 ~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .    ...--+||||..+++|++|...|+
T Consensus       207 ~----~llnG~Av~~l~~~~~eeAe~lL~  231 (299)
T KOG3081|consen  207 P----LLLNGQAVCHLQLGRYEEAESLLE  231 (299)
T ss_pred             h----HHHccHHHHHHHhcCHHHHHHHHH
Confidence            6    467789999999999999987764

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=83.13  E-value=1.5  Score=44.23  Aligned_cols=35  Identities=29%  Similarity=0.573  Sum_probs=27.2

Q ss_pred             EEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871          109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY  147 (276)
Q Consensus       109 V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~  147 (276)
                      |..|.|++-|+++| |++||+|+++-.   ..+.+..+|
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING---~~V~Dw~D~   36 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSING---VAPRDLIDY   36 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECC---EECCCHHHH
Confidence            56789999999999 999999999864   344443343

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=83.06  E-value=2.4  Score=46.97  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      +.++.+.++-|||..-.--.|    .-+-|.--|.+.-..|+|.-|+..|++|..++|..-   .+.|-+|.--.-+|++
T Consensus       574 ea~n~h~aV~~fQsALR~dPk----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPK----DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRFKEAVMECDNGKY  646 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCch----hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHHHHHHHHHHhhhH
Confidence            567777777777774333332    234577888888899999999999999999999984   6789999999999999


Q ss_pred             hHHHhhhC
Q 023871          269 PLLLALIE  276 (276)
Q Consensus       269 ~eAI~aLE  276 (276)
                      ++|++.|+
T Consensus       647 keald~l~  654 (1238)
T KOG1127|consen  647 KEALDALG  654 (1238)
T ss_pred             HHHHHHHH
Confidence            99998774

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=82.83  E-value=7.7  Score=34.42  Aligned_cols=82  Identities=13%  Similarity=0.049  Sum_probs=62.9

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhHHHHhcC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-~e~a~A~YN~AcCyaKLg  266 (276)
                      ..|+.+.++.-|     .++-.+-.++-.++ +++.++-=.|+-++|++-.++||++..+- ...-.+|..++.-|-++|
T Consensus        55 E~g~Ld~AlE~F-----~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   55 EAGDLDGALELF-----GQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             hccchHHHHHHH-----HHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            468888886554     45667776665655 77888878899999999999999876443 333667999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      +-+.|-...
T Consensus       130 ~dd~AR~DF  138 (175)
T KOG4555|consen  130 NDDAARADF  138 (175)
T ss_pred             chHHHHHhH
Confidence            998886543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=82.67  E-value=5.2  Score=41.06  Aligned_cols=45  Identities=13%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+.|++++|...|++..+  ||.    ..|..+..+|++.|++++|++.+
T Consensus       370 y~k~G~~~~A~~vf~~m~~--~d~----~t~n~lI~~y~~~G~~~~A~~lf  414 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR--KNL----ISWNALIAGYGNHGRGTKAVEMF  414 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC--CCe----eeHHHHHHHHHHcCCHHHHHHHH
Confidence            3567888888888887653  443    46777778888888888887765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.62  E-value=1.1  Score=47.83  Aligned_cols=51  Identities=24%  Similarity=0.376  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-hHHHHHHHHhHHHHhcCC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-e~a~A~YN~AcCyaKLgq  267 (276)
                      +++.+||.+|+.++|++|.-.|..++.+-|.+. ..+..+.|++.||++++-
T Consensus        55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l  106 (748)
T KOG4151|consen   55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGL  106 (748)
T ss_pred             HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCc
Confidence            455889999999999999999999999988654 448889999999987653

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=82.47  E-value=5.9  Score=33.44  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      +-++.|..|...|++++|+..|-.||.++|+..+.
T Consensus        65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L   99 (121)
T PF02064_consen   65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL   99 (121)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            34588999999999999999999999999998653

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.35  E-value=7.3  Score=29.40  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +-..+.+|...-+.|+|++|+..|.+|++
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   34 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALE   34 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456778888899999999999999874

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.97  E-value=3.6  Score=31.51  Aligned_cols=29  Identities=14%  Similarity=0.059  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +-+.+.+|++.-+.|+|++|+.+|.+||+
T Consensus         6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale   34 (75)
T cd02684           6 AIALVVQAVKKDQRGDAAAALSLYCSALQ   34 (75)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34556778888999999999999999884

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]

Probab=81.83  E-value=3.2  Score=45.83  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=60.5

Q ss_pred             EEEEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEe
Q 023871           87 YEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ  166 (276)
Q Consensus        87 y~V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~  166 (276)
                      .+.+..--||.-|-.+  --|.|..|.+||.+.  |++.+||+|+++.    +|=..+.--.+|+..+|.--..|.|.+-
T Consensus        59 vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN----~Epv~daprervIdlvRace~sv~ltV~  130 (1298)
T KOG3552|consen   59 VQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVN----GEPVKDAPRERVIDLVRACESSVNLTVC  130 (1298)
T ss_pred             hhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEec----CcccccccHHHHHHHHHHHhhhcceEEe
Confidence            4556666788888776  679999999999976  8999999999965    4666666667899999977788999888


Q ss_pred             ec
Q 023871          167 KR  168 (276)
Q Consensus       167 R~  168 (276)
                      ++
T Consensus       131 qP  132 (1298)
T KOG3552|consen  131 QP  132 (1298)
T ss_pred             cc
Confidence            86

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=81.42  E-value=2.4  Score=43.55  Aligned_cols=48  Identities=13%  Similarity=0.085  Sum_probs=38.9

Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ....|+++.|...+++.++++|++..   .|.-+.-+|++.|+|++|.+.+
T Consensus       504 ~~~~g~~~~a~~~~~~l~~~~p~~~~---~y~~L~~~y~~~G~~~~A~~v~  551 (697)
T PLN03081        504 CRIHKNLELGRLAAEKLYGMGPEKLN---NYVVLLNLYNSSGRQAEAAKVV  551 (697)
T ss_pred             HHHcCCcHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhCCCHHHHHHHH
Confidence            35779999999999999999998753   3445556899999999998765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=81.32  E-value=1.4  Score=28.63  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=26.4

Q ss_pred             HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHH
Q 023871          205 YMKKKEQKER-REQDLREGLQLYRTGKYEVARE  236 (276)
Q Consensus       205 Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~  236 (276)
                      |+|+-++... .+.+++-|+.+...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            6777777776 3667899999999999999973

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=81.23  E-value=3.2  Score=41.21  Aligned_cols=52  Identities=21%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +++-+.+..|+|..||.--.+||.++|.+-   .|+|--|-|+..|+.+++|+.-
T Consensus       124 NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~---Ka~~R~Akc~~eLe~~~~a~nw  175 (390)
T KOG0551|consen  124 NRAAAQLYLGNYRSALNDCSAALKLKPTHL---KAYIRGAKCLLELERFAEAVNW  175 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcchh---hhhhhhhHHHHHHHHHHHHHHH
Confidence            666677889999999999999999999995   7999999999999998888753

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.96  E-value=2.4  Score=32.97  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGS  244 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i  244 (276)
                      -..+..|+..-+.|+|++|+..|..||+.
T Consensus         7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            34456778888999999999999999954

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=80.20  E-value=44  Score=31.99  Aligned_cols=133  Identities=14%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             cceecccch-------hHHHHhhcc--cCceEEEEeecCCCccccccc-chHHHHHHhhcCCCcchhHHHHHHH------
Q 023871          140 EIWPAAEYG-------RTMYTIRQR--VGPLLMKMQKRYGKMEQTGEL-SEKEIIRAERNSGVISNRVREIQMQ------  203 (276)
Q Consensus       140 evw~a~~~g-------~~~~air~r--~gpv~L~l~R~~~~~~~~~~~-~e~~~~~~~r~~G~i~~al~Eiq~~------  203 (276)
                      =+|+..+=-       ++++-+|.-  .++.-|--+++.=.+.-++++ .+...|.+++..|..-...-++++.      
T Consensus        49 llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~~~~~~~  128 (280)
T COG3629          49 LLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAGELLSE  128 (280)
T ss_pred             hccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHHHHHhhc
Confidence            478754422       345545522  355555555543334444554 6666777777666655555444441      


Q ss_pred             --------HHhhHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhH
Q 023871          204 --------NYMKKKEQKERREQD-----LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPL  270 (276)
Q Consensus       204 --------nYkk~Kelkkqae~~-----~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~e  270 (276)
                              ++.=.-++....+++     .+.+.++...|+++.++...++-+..+|-++   .+|+-.=..|.+-|....
T Consensus       129 g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E---~~~~~lm~~y~~~g~~~~  205 (280)
T COG3629         129 GPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE---PAYLRLMEAYLVNGRQSA  205 (280)
T ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHcCCchH
Confidence                    222223333333333     2344455778999999999999999999986   578888888999999999


Q ss_pred             HHhhh
Q 023871          271 LLALI  275 (276)
Q Consensus       271 AI~aL  275 (276)
                      ||..+
T Consensus       206 ai~~y  210 (280)
T COG3629         206 AIRAY  210 (280)
T ss_pred             HHHHH
Confidence            98875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=80.08  E-value=2.5  Score=38.26  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             HHHhhHHHHHHHHHH-HHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCChhh
Q 023871          203 QNYMKKKEQKERREQ-DLREGLQLYRTG-----------KYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       203 ~nYkk~Kelkkqae~-~~~eGnaLfk~g-----------rYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      .-|..+-.++...-+ .+.-||++...+           -|+.|..+|++|.+.+|++..
T Consensus        56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   56 SKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            446666666666533 468888886443           389999999999999999963

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]

Probab=80.07  E-value=6.9  Score=38.54  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCCCc
Q 023871           95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM  172 (276)
Q Consensus        95 LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~~~  172 (276)
                      .||.+.-+.-  .-+||+.|-.+..|++.|.|+.||.|++|.++   .|- -..--.|-.+|..--++|.+..-+--++.
T Consensus        18 iGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~---svK-GktKveVAkmIQ~~~~eV~IhyNKL~adp   93 (429)
T KOG3651|consen   18 IGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGI---SVK-GKTKVEVAKMIQVSLNEVKIHYNKLEADP   93 (429)
T ss_pred             eeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecce---eec-CccHHHHHHHHHHhccceEEEehhcccCc
Confidence            4666543311  16899999999999999999999999999864   110 01111456688888999999877666655


Q ss_pred             ccc
Q 023871          173 EQT  175 (276)
Q Consensus       173 ~~~  175 (276)
                      ..+
T Consensus        94 ~qG   96 (429)
T KOG3651|consen   94 TQG   96 (429)
T ss_pred             ccC
Confidence            443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-08
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	6e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	8e-08
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-07
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-07
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-07
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-07
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	4e-07
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	4e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	5e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	5e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	6e-07
2opg_A	98	Multiple PDZ domain protein; structural protein, s	6e-07
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	7e-07
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	7e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	7e-07
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	9e-07
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-06
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-06
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-06
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-06
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-06
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-06
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-06
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-05
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-05
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-06
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	5e-06
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	5e-06
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-06
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-06
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	6e-06
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	6e-06
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	7e-06
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	7e-06
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	9e-06
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	9e-06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	9e-06
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	9e-06
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	9e-06
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	9e-06
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-05
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-05
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-05
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-05
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	1e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-05
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-05
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-05
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-05
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	3e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-05
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	3e-05
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	3e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-05
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	3e-05
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	3e-05
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-05
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-05
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-05
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-05
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	4e-05
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	5e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	5e-05
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	6e-05
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	7e-05
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	7e-05
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	7e-05
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	8e-05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	8e-05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	5e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	8e-05
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	8e-05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-05
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	9e-05
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-04
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-04
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-04
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-04
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-04
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-04
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-04
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	3e-04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-04
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	5e-04
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	5e-04
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	5e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	5e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	6e-04
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	6e-04
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	7e-04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	7e-04
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 41/325 (12%), Positives = 81/325 (24%), Gaps = 106/325 (32%)

Query: 11  LYSPPPLPRTNQNPFLF----SQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETE 66
           + S   +  T     LF    S+   +  K   F+         +L     F+    +TE
Sbjct: 55  IMSKDAVSGTL---RLFWTLLSKQEEMVQK---FV-------EEVLRINYKFLMSPIKTE 101

Query: 67  A-QASPEAESGSEEQE------EKYEEYEVEIEQPY-----GLKFAKGRDGGTYIDAIAP 114
             Q S       E+++      + + +Y V   QPY      L   +       ID    
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLID---- 156

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY--TIRQRVGP--LLMKMQKRYG 170
                  G+   G   +A       ++    ++   ++   ++    P  +L  +QK   
Sbjct: 157 -------GVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLY 207

Query: 171 KMEQTGELSEKEIIRAERNSGVISNRVREIQMQ--------------------------- 203
           +++             +     I   +R +                              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 204 -----------NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEE 250
                      +++                L        E  +      L  +P   P E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDE-VKSLLLKYLDCRPQDLPRE 321

Query: 251 SSVASYNVACCYSKLNQVPLLLALI 275
                          N  P  L++I
Sbjct: 322 --------VL---TTN--PRRLSII 333

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 64  ETEAQASPEAESGSEEQE-EKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGS 117
                 S   + G+E    +  + Y VE+E    G  F    GR+     Y+  +A  G 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGP 61

Query: 118 ADKTGMFQVGDKVLA 132
           A+++G  ++GD++L 
Sbjct: 62  AERSGKMRIGDEILE 76

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           S   E        EVE+     GL F    G+  G  +  I PGG AD+ G  Q GD +L
Sbjct: 5   SSGPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHIL 64

Query: 132 A 132
            
Sbjct: 65  K 65

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               E++ V++     +  GL      + G  I  +  G   +     Q GD +  
Sbjct: 4   RNSLEKFNVDLMKKAGKELGLSL-SPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 58

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E    G  F    GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVLA 132
           D+++ 
Sbjct: 59  DQIIE 63

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD----GGTYIDAIAPGGSADKTGMFQ 125
             SGS  Q      + VE+     G       GRD        +  +   G A + G  +
Sbjct: 1   GSSGSSGQAS--GHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLE 58

Query: 126 VGDKVLA 132
           VGD VL 
Sbjct: 59  VGDLVLH 65

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMF 124
            SPE      E++   E   + I       G     G DG G +I  I  GG AD +G  
Sbjct: 1   GSPEFLG---EEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGEL 57

Query: 125 QVGDKVLA 132
           + GD++L+
Sbjct: 58  RKGDQILS 65

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA---------KGRDGGTYIDAIAPGGS 117
            S  +  GS+     +E Y VE+  +    L             G   G Y+ ++ PG +
Sbjct: 1   GSSGSSGGSDSSL--FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSA 58

Query: 118 ADKTGMFQVGDKVLA 132
           A   G  QV DK++A
Sbjct: 59  AYHNGHIQVNDKIVA 73

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 85  EEYEVEI---EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E EV +   E   GL       G  +I  I  GG  D      VGD + +
Sbjct: 5   IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES 55

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E++ V++     +  GL  +   + G  I  +  G   +     Q GD +  
Sbjct: 2   EKFNVDLMKKAGKELGLSLS-PNEIGCTIADLIQGQYPEIDSKLQRGDIITK 52

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 76  GSEEQEEKYEE-YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           G             ++ E    +P G+           +  I  GG   + G   VGD++
Sbjct: 2   GHHHHHHSGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEI 61

Query: 131 LA 132
           L 
Sbjct: 62  LE 63

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSA 118
            S  +   +   +    E E+ +   P GL F             D G Y+  I   G+A
Sbjct: 1   GSSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAA 60

Query: 119 DKTGMFQVGDKVLA 132
              G  Q GDK+L+
Sbjct: 61  ALDGRLQEGDKILS 74

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVG 127
            GS+ +E   E   V +++  G+         A     G Y+ ++  GG+AD  G    G
Sbjct: 3   LGSDHKEP--EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAG 60

Query: 128 DKVLA 132
           D++L+
Sbjct: 61  DQLLS 65

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 84  YEEYEVEIE----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +   + ++    +  GL     R+  G ++  I  GG AD  G    GD++L 
Sbjct: 3   SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILM 56

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMF 124
            + E    S           V IE     P G    +       I  I  GG+A+K+G+ 
Sbjct: 9   ITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGLL 67

Query: 125 QVGDKVLA 132
             GD+VL 
Sbjct: 68  HEGDEVLE 75

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 54  KPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD--------- 104
           KP + ++   +    +S        E   +    +   E+P G     G           
Sbjct: 3   KPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLE 62

Query: 105 --GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              G +I  + PGG A  TG+  V D+VL 
Sbjct: 63  KVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           GS      Y+E +V +     G  F             I A+   GSAD+ G    GD++
Sbjct: 1   GSS-GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDEL 59

Query: 131 LA 132
           + 
Sbjct: 60  VY 61

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  +EI     GL      G D   G   I  +   G+A K G    GD++L 
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILE 57

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKT 121
           + S  E    + EE  + I  Q  GL  +          KG D G +I  ++  G A + 
Sbjct: 3   SGSSGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGDK+L 
Sbjct: 63  GV-RVGDKLLE 72

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               VE+     GL F     K ++   YI  + PGG AD+ G  + GD++L+
Sbjct: 5   SSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLS 57

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 70  SPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGM 123
           S   E    E        +V +  E   GL  +    K       I  I PG  AD+ G 
Sbjct: 12  SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71

Query: 124 FQVGDKVLA 132
             VGD +LA
Sbjct: 72  LHVGDAILA 80

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIA 113
           +S   A ++  A   S E   +     V +E    GL F    G+          I+ I 
Sbjct: 6   SSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIF 65

Query: 114 PGGSADKTGMFQVGDKVLA 132
            G +++++   Q GD++L 
Sbjct: 66  KGAASEQSETVQPGDEILQ 84

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTG 122
            S  +   +       +E  +EI     GL      G+D       I  +   G+A + G
Sbjct: 1   GSSGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDG 60

Query: 123 MFQVGDKVLA 132
               GD++L 
Sbjct: 61  RLWAGDQILE 70

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIEQ-PYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++VE+ +   GL           K    G ++ +I    + +  G  Q+GD+++A
Sbjct: 4   ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 12/70 (17%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTG 122
           S        +  Y VE+        L             G   G Y+ ++ PG +A   G
Sbjct: 2   SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61

Query: 123 MFQVGDKVLA 132
             +  DK+L 
Sbjct: 62  RIEPNDKILR 71

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             Y VE++     L       +       I ++  GG A++TG   +GD++LA
Sbjct: 5   IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILA 57

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 44  SGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--- 99
           S           +    + +E     +  AE   E++ E+ E + VE+E    GL     
Sbjct: 39  STAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISII 98

Query: 100 -------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                        G ++  +  GG+A + G  QV D ++ 
Sbjct: 99  GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE-QPYGLKFA---------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  E+ +E    GL F+            D G +I  I PGG+A   G   V D VL 
Sbjct: 3   FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 81  EEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           +    E E+ +   P GL F             D G Y+  I   G+A   G  Q GDK+
Sbjct: 3   DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62

Query: 131 LA 132
           L+
Sbjct: 63  LS 64

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVL 131
           G  E++   E   + I       G     G  G G +I  I  GG AD +G  + GD++L
Sbjct: 2   GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQIL 61

Query: 132 A 132
           +
Sbjct: 62  S 62

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKV 130
           S      +  E  ++ +       G     G DG G ++  I  GG AD +G  + GD++
Sbjct: 5   SSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRI 64

Query: 131 LA 132
           L+
Sbjct: 65  LS 66

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           +  S   E   +    + E   V+++   +P G+    G  GG Y+  +  G  A + G+
Sbjct: 2   SSGSSGGERRKDRPYVE-EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL 60

Query: 124 FQVGDKVLA 132
            + GD++L 
Sbjct: 61  -EYGDQLLE 68

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 76  GSEEQEEKYEEYEVEIEQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           GS   E       +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 1   GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 60

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 55  PSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYID 110
                A    +  + SP A+    E++   E   + I       G     G DG G +I 
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFIS 336

Query: 111 AIAPGGSADKTGMFQVGDKVLA 132
            I  GG AD +G  + GD++L+
Sbjct: 337 FILAGGPADLSGELRKGDQILS 358

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSAD 119
           + EA       E + E  E+ +E      G   A G D          +I  I PGG+A 
Sbjct: 44  TLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAA 103

Query: 120 KTGMFQVGDKVL 131
           + G  +V D +L
Sbjct: 104 QDGRLRVNDSIL 115

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 78  EEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           ++ +      +V +  E   GL  +    K       I  I PG  AD+ G   VGD +L
Sbjct: 2   KKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAIL 61

Query: 132 A 132
           A
Sbjct: 62  A 62

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +G++                I  I     A++ G+ Q+GD+V+A
Sbjct: 6   ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 77  SEEQEEKYEEYEVEIEQP----YGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGD 128
           +E        + V++ +      G+  +            I  I  G  A +TG  ++GD
Sbjct: 99  AESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGD 158

Query: 129 KVLA 132
           K+LA
Sbjct: 159 KLLA 162

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 85  EEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           EE  + I  Q  GL  +          KG D G +I  ++  G A + G+ +VGDK+L 
Sbjct: 3   EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGV-RVGDKLLE 60

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF-------AKGRDGGTYIDAI 112
           +S +    + +  S  ++  +  +   ++IE+P   GL F               ++  +
Sbjct: 2   SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61

Query: 113 APGGSADKTGMFQVGDKVLA 132
            PG  AD+    +  D++LA
Sbjct: 62  QPGSVADRDQRLKENDQILA 81

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 79  EQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
             ++  +   ++++    GL F         G     Y+  I P G+A + G  + GD++
Sbjct: 5   NTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRL 64

Query: 131 LA 132
           + 
Sbjct: 65  IE 66

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKT 121
                 GS   ++  +   ++++    GL F         G     Y+  I P G+A + 
Sbjct: 15  ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 74

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 75  GRLKAGDRLIE 85

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 15/80 (18%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAI 112
            +S           +  +   VE+  E    L      GR             G +I  +
Sbjct: 7   HSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHV 66

Query: 113 APGGSADKTGMFQVGDKVLA 132
                A K G  + GD+++ 
Sbjct: 67  LEDSPAGKNGTLKPGDRIVE 86

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 76  GSEEQEEKYEEYEVEIE--QPYGLKF-----------AKGRDGGTYIDAIAPGGSADKTG 122
           GS       +  +V I   +  G  F                    I  I  G  AD+  
Sbjct: 1   GSSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA 60

Query: 123 MFQVGDKVLA 132
             +VGD++LA
Sbjct: 61  KLKVGDRILA 70

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 86  EYEVEIE-QPYGLKF----AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++ +  +  G  F            YI  I P G+AD  G  + GD++++
Sbjct: 3   EQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELIS 54

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTG 122
            S  A +    ++   ++  +     E    L    G D   G   + A+  GG+A++ G
Sbjct: 1   GSEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHG 60

Query: 123 MFQVGDKVLA 132
               GD+++A
Sbjct: 61  GVVKGDEIMA 70

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKF--AKGRDGGT---YIDAIAPGG 116
           S +   A  + +      +   E + +E+E+   GL    A  +D      ++  I P G
Sbjct: 3   SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEG 62

Query: 117 SADKTGMFQVGDKVLA 132
            A   G  ++GD++L 
Sbjct: 63  PAAADGRMRIGDELLE 78

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV +  +     F         + +     I ++ PGG AD+ G  + GD++L+
Sbjct: 3   RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLS 59

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  +V +      +  G+K  +  D  G +I  +  GG A + G     D+VLA
Sbjct: 3   EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLA 56

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 89  VEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +    +P G    K    G   +  I  GG+AD++G+  VGD++  
Sbjct: 8   IRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELRE 55

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +EVE+      L      G +     GG Y+ A+ P G+A+  G    GD+VLA
Sbjct: 5   DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 81  EEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           E K +    ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 14  ELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF-------AKGRDGGTYIDAIAPGGSA 118
            +S           +   E  V I  +    L          +  D   Y+ ++ PGG  
Sbjct: 7   HSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVI 66

Query: 119 DKTGMFQVGDKVLA 132
            + G  + GD +L 
Sbjct: 67  SRDGRIKTGDILLN 80

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 72  EAESGSEEQEEKYEEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQ 125
              SG+  ++       +  ++     G   A G D       +  + P G A + G  Q
Sbjct: 3   SGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQ 62

Query: 126 VGDKVLA 132
            G++VL+
Sbjct: 63  KGNEVLS 69

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 77  SEEQEEKYEEYEVEI--EQPYGLKFA-KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                 + E++ V++  +    L  +    + G  I  +  G   +     Q GD +  
Sbjct: 105 FRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 163

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  +E++   +P G+    G++     G  I  + P G        ++ D +  
Sbjct: 18  KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICD 72

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 65  TEAQASPEAESGSEEQE-EKYEEYEVEIEQ-PYGLKF--AKGR-------DGGTYIDAIA 113
                S   + G+E    +     E+++ + P GL F  A G        D   Y+  I 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62

Query: 114 PGGSADKTGMFQVGDKVLA 132
            GG+A K G  QVGD++L 
Sbjct: 63  DGGAAQKDGRLQVGDRLLM 81

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 68  QASPEAESGSE-EQEEKYEEYEVEIE--QPYGLKF-------AKGRDGGTYIDAIAPGGS 117
             S   + G+E    +      VE++      L         +   D   +I  + P G 
Sbjct: 6   HHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGV 65

Query: 118 ADKTGMFQVGDKVLA 132
           A +T   +VGD+++ 
Sbjct: 66  AAQTQKLRVGDRIVT 80

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE--QPYGLKFA--------KGRDGGTYIDA 111
           +S +              +  +    E+ +      GL  +         G D G +I +
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 112 IAPGGSADKTGMFQVGDKVLA 132
           I  GG+A K G  ++ D+++A
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIA 82

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 77  SEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           S      ++   V+++      F    G +      +  I  GG A  +   + GD+++ 
Sbjct: 3   SGSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVN 62

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVG 127
           S  +          VEI        G+              ID I P    D++G    G
Sbjct: 5   SSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 128 DKVLA 132
           D +L+
Sbjct: 65  DHILS 69

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 88  EVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 4   LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAP 114
                 +  +  + +   +   +   + +E  P GL F       +   D   Y+  +  
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA 62

Query: 115 GGSADKTGMFQVGDKVLA 132
            G+A + G  + GD+++A
Sbjct: 63  KGAASEDGRLKRGDQIIA 80

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            G        +  +       GL+ A G D G ++  +     A K G+ + GD++L 
Sbjct: 21  QGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILR 77

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   V +      GL  +    +       I  I  G +AD+T    VGD +L+
Sbjct: 4   QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILS 57

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSAD 119
            S  +           E   VE+     GL F                 I ++   G A+
Sbjct: 1   GSSGSSGELALWSP--EVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAE 58

Query: 120 KTGMFQVGDKVLA 132
           ++G    GD++++
Sbjct: 59  RSGGLLPGDRLVS 71

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF--AKGRDG-----GTYIDAIAPGGSAD 119
           A  E +   +   +       E+ +P   GL F     R       G ++  I  G  A 
Sbjct: 4   ACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAH 63

Query: 120 KTGMFQVGDKVLA 132
           + G  +  D++LA
Sbjct: 64  RDGRLKETDQILA 76

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKV 130
           GS     +     +      +  G     G + G   Y+  + PG  A+K G+ +VGD++
Sbjct: 1   GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQI 59

Query: 131 LA 132
           L 
Sbjct: 60  LR 61

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 62  ASETEAQASPEAESGSEEQEEKY---EEYEVEIE-QPYGLKFA-KGRDGGTYIDAIAPGG 116
            S   + +  E E  S+ +       +  + ++     GL            I  +   G
Sbjct: 1   GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKG 60

Query: 117 SADKTGMFQVGDKVLA 132
           +A   G+ Q GD +++
Sbjct: 61  AAASDGILQPGDVLIS 76

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGG 116
           ++    A P A      +    +   V +        G+    GR+      I  I  G 
Sbjct: 55  AQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGL 114

Query: 117 SADKTGMFQVGDKVLA 132
           +AD+T    VGD +L+
Sbjct: 115 AADQTEALFVGDAILS 130

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 82  EKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSADKTGMFQV 126
           +  +   VE+  E    L      GR             G +I  +     A K G  + 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 127 GDKVLA 132
           GD+++ 
Sbjct: 61  GDRIVE 66

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 85  EEYEVEIE-----QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++V +      + +G   A G  + G Y+  I P G  D  G+ +  D++L 
Sbjct: 6   ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGL-KPYDRLLQ 58

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 88  EVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 3   HTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 52

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIEQ-PYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             +   + +   GL F+          +  D G ++  IA GG+A + G  QVGD+VL+
Sbjct: 7   GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                   VE+        GL  + G D  G   +  +  GG A ++    VGD + A
Sbjct: 3   GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G    + +     I  + PGG AD+ G  + GD++L+
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLS 162

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD--GGTYIDAIAPGGSADKTGM 123
           +        +  + K       ++    G  F    G +      + ++ P G A + G 
Sbjct: 3   SGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGK 62

Query: 124 FQVGDKVLA 132
            + GD ++ 
Sbjct: 63  METGDVIVY 71

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIEQ-PYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV + + P GL F             D   YI  I  GG+A K G  Q+GD++LA
Sbjct: 3   TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVG 127
           GS          EV +E    +  G+   +   G       I  +  GG A+++G   +G
Sbjct: 1   GSSGSSGD-NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59

Query: 128 DKVLA 132
           D++ A
Sbjct: 60  DRLTA 64

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 12/60 (20%)

Query: 85  EEYEVEIE--QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V ++                      +  G +I  I P   A   G  +VGD++L+
Sbjct: 5   LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           + +EVE+      L                 R GG Y+ A+ P G+A+  G    GD+VL
Sbjct: 9   DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68

Query: 132 A 132
           A
Sbjct: 69  A 69

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  E+++   P GL F             D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 3   KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + VE+E  P GL               G YI  + PG  A   G   +GD++L 
Sbjct: 8   YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           +   + +      L F                  G ++  I   G A K G  Q+ D+++
Sbjct: 8   KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 132 A 132
            
Sbjct: 68  E 68

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 73  AESGSEEQEEK-YEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSAD 119
             SGS   EE  +E+Y V ++     G   A          +  +    I  + PGG AD
Sbjct: 1   GSSGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD 60

Query: 120 KTGMFQVGDKVLA 132
             G+ Q  D+V+ 
Sbjct: 61  --GLLQENDRVVM 71

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)

Query: 96  GLKFAKGRDG-------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G++   G++        G YI  I PGGSA++TG    G +VL 
Sbjct: 33  GIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLE 76

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 87  YEVEI--EQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             V +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 53

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVG 127
             S    ++   + V    +  GL         +      YI  + PGG   K G  + G
Sbjct: 4   GSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPG 63

Query: 128 DKVLA 132
           D++++
Sbjct: 64  DQLVS 68

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           GS         + V +E       G     G + G   ++  +  G SA++ G+  VGDK
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGL-CVGDK 59

Query: 130 VLA 132
           +  
Sbjct: 60  ITE 62

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 84  YEEYEVEIEQ------PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
           + +  + I Q       +G        G  ++ ++  G  A+ + + QV D+++   A+ 
Sbjct: 2   FSDMRISINQTPGKSLDFGFTIKWDIPG-IFVASVEAGSPAEFSQL-QVDDEII---AIN 56

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQ-KRYGK 171
            T+     +       + +      + M  +RYGK
Sbjct: 57  NTKF-SYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L 
Sbjct: 4   MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILA 157

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGD 128
           S    +  ++    V ++       G     G+      +I  + P   A + G+ Q GD
Sbjct: 5   SSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGL-QEGD 63

Query: 129 KVLA 132
           +VLA
Sbjct: 64  QVLA 67

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 84  YEEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E + VE+E    GL            A     G ++  +  GG+A + G  QV D+++ 
Sbjct: 8   LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKT 121
             S      +    +  +E +V +     +  GL    G + G   YI  + PG  A+ +
Sbjct: 3   SGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGD++L 
Sbjct: 63  GL-KVGDQILE 72

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 91  IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                G       D G +I  ++P G+A + G  +VG ++L 
Sbjct: 31  ARGHAGNPRDPT-DEGIFISKVSPTGAAGRDGRLRVGLRLLE 71

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               V +++     G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 81  EEKYEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGD 128
              +E++ V +     +G   A          +  +    I  +  GG A+  G  Q  D
Sbjct: 3   HMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEND 60

Query: 129 KVLA 132
           +V  
Sbjct: 61  RVAM 64

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIEQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQ 125
           S  +      +E K ++  + +    GL  +      +  G +I  + PG  + + G+ +
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGL-E 60

Query: 126 VGDKVLA 132
           +GD+++ 
Sbjct: 61  IGDQIVE 67

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           GS     +     V I     +  G+ F +   G   I  I  GG   + G+  VGD + 
Sbjct: 1   GSSGSSGR----MVGIRKTAGEHLGVTF-RVEGGELVIARILHGGMVAQQGLLHVGDIIK 55

Query: 132 A 132
            
Sbjct: 56  E 56

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           DGG YI +I  GG+    G  + GD +L 
Sbjct: 32  DGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 73  AESGS--EEQEEKYEEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDK 129
             SGS  E   E  E+ ++ I     G  F    D    + A+  GG A++ G+ Q  D 
Sbjct: 1   GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDT 59

Query: 130 VLA 132
           VL 
Sbjct: 60  VLQ 62

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 93  QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + YGL+ A       ++  I+    A + G  Q GD VL 
Sbjct: 13  EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLK 48

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 15/73 (20%)

Query: 75  SGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSAD 119
           S             VEI  E    L      G+             G +I  +     A 
Sbjct: 5   SSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAG 64

Query: 120 KTGMFQVGDKVLA 132
           KT   + GDK+L 
Sbjct: 65  KTNALKTGDKILE 77

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G K  +      +I  +  G  AD  G  + GD+VL 
Sbjct: 56  GGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-----QPYGLKFAKGRDG----GTYIDAIAPGGSAD 119
           +    +   E   E+ E  EV++         GL      D     G YI  I P   A 
Sbjct: 3   SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62

Query: 120 KTGMFQVGDKVLA 132
           K G  + GD+++ 
Sbjct: 63  KDGRIREGDRIIQ 75

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E    GL                  G ++  +  GG+A + G  QV D ++ 
Sbjct: 4   ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE--QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             Y V +    P+G +   G+D      I ++  GG A +  + ++GD VL+
Sbjct: 3   SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANV-RIGDVVLS 53

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             ++        ++  +   G A K G    GD +L 
Sbjct: 12  NEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILK 48

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V+I+         F         + A+  GGSA   G    GD++L 
Sbjct: 8   VRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH--GKLFPGDQILQ 56

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           + ++V +E P    F    G+D      I  + PGG A + G+  VGD VL+
Sbjct: 3   DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGV-AVGDWVLS 53

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 76  GSEEQEE-KYEEYEVEIEQPYGLKF------------AKGRDGGTYIDAIAPGGSADKTG 122
           GS    E   +E  V +E+   L F             +  D G ++  + P G A    
Sbjct: 1   GSHMGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--K 58

Query: 123 MFQVGDKVLA 132
           + Q GDK++ 
Sbjct: 59  LLQPGDKIIQ 68

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 105 GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++  I+    A + G  Q GD VL 
Sbjct: 23  SHIFVKEISQDSLAARDGNIQEGDVVLK 50

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGM 123
           +   E +  +  +  K +E  ++   P GL      G + G   +I  +  GG AD  G+
Sbjct: 69  KHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGL 128

Query: 124 FQVGDKVLA 132
            QVGD+++ 
Sbjct: 129 -QVGDEIVR 136

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  EV +        GL+     D G ++  +     A   G+ + GD+VL 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVGL-RFGDQVLQ 53

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 89  VEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           VE+     G  F         +  +  G  AD  G+ + GD++LA
Sbjct: 6   VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGL-RAGDQILA 49

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 73  AESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVG 127
             SGS      +   E ++     Q YG      +D  G  I  I  G  A+K G+   G
Sbjct: 1   GSSGSSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDG 59

Query: 128 DKVLA 132
           D+VL 
Sbjct: 60  DRVLR 64

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 101 KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                  YI  +     A   G    GD++  
Sbjct: 46  AQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 82  EKYEEYEVEIE--QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
                + V +    P+G +   GRD      I  +  G  A    +   GD + A
Sbjct: 5   SSGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAAL-CPGDLIQA 58

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 85  EEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++ I     G  F    D    + A+  GG A++ G+ Q  D VL 
Sbjct: 3   RYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDTVLQ 50

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADK-T 121
            S   +              + ++      +G     G D      +  +APG  AD   
Sbjct: 1   GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCV 60

Query: 122 GMFQVGDKVLA 132
                GD+V+ 
Sbjct: 61  PRLNEGDQVVL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.01
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.0
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.83
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.66
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.63
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.63
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.6
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.56
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.55
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.54
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.54
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.54
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.53
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.52
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.51
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.49
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.48
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.47
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.47
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.47
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.47
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.46
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.46
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.46
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.45
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.44
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.44
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.44
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.44
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.44
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.44
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.42
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.4
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.4
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.4
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.39
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.39
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.37
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.37
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.37
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.37
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.36
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.36
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.36
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.35
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.35
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.35
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.34
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.33
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.33
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.33
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.33
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.33
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.33
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.32
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.31
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.31
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.3
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.29
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.29
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.29
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.29
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.28
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.28
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.28
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.27
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.27
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.27
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.27
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.26
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.26
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.26
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.26
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.25
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.25
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.24
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.24
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.23
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.23
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.22
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.22
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.21
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.21
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.21
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.2
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.2
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.2
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.2
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.19
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.19
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.18
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.17
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.17
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.17
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.17
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.16
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.16
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.16
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.16
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.16
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.14
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.14
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.14
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.14
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.14
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.13
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.13
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.11
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.1
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.1
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.09
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.09
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.08
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.08
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.07
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.07
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.06
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.05
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.04
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.04
2ego_A	96	General receptor for phosphoinositides 1- associat	98.04
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.03
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.03
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.03
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.02
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.02
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.02
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.01
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.01
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.0
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	97.99
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.99
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	97.99
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	97.99
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	97.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.98
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	97.97
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	97.97
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	97.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.97
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	97.96
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	97.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.96
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	97.96
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.95
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	97.95
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	97.95
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	97.95
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.95
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.94
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.94
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	97.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.91
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.91
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	97.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.9
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	97.89
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	97.89
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.87
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	97.87
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.86
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.86
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	97.85
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	97.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.83
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.83
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	97.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.81
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.81
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	97.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.79
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.79
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.78
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.78
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	97.78
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.77
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.73
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.73
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.73
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.72
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.71
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	97.7
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.69
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.68
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	97.67
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.67
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	97.66
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.64
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.64
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.63
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.62
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	97.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.61
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.57
3khf_A	99	Microtubule-associated serine/threonine-protein ki	97.57
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	97.56
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.53
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.51
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	97.5
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.49
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.46
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.37
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	97.37
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	97.34
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.3
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	97.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.27
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	96.36
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.26
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	97.23
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.18
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.14
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.08
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.06
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	97.05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.0
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.99
2kl1_A	94	YLBL protein; structure genomics, structural genom	96.96
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	96.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.92
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.9
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	96.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.86
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	96.86
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	96.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.78
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	96.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.57
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	96.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.52
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	96.43
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.37
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.36
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	96.3
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.22
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.16
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.13
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.11
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	96.05
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	95.98
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.88
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	95.87
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	95.86
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.79
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.52
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.5
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	95.5
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	95.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.32
3k50_A	403	Putative S41 protease; structural genomics, joint	95.31
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.26
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.17
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	95.02
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.92
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	94.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	94.37
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.99
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.88
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	93.33
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.87
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	92.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	92.6
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	92.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	91.86
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	91.75
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	91.58
1klx_A	138	Cysteine rich protein B; structural genomics, heli	90.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	90.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.51
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	89.79
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	89.26
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.03
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	86.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.0
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.53
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.59
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	80.98
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	80.78
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	80.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	80.33

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.01  E-value=7.9e-10  Score=85.83  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..+.+.|+.+|+.|+|++||..|++||+++|++.   .+|+|+|.||.++|++++|++.+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~   65 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---TFYNNKAAVYFEEKKFAECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhhhHHHHHHHH
Confidence            34456899999999999999999999999999985   68999999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.00  E-value=6.4e-10  Score=86.66  Aligned_cols=80  Identities=9%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|+     ..|.++-++... ..-++..|..++++|+|++|+..|++||+++|++.   .+|+|++.||..+|+
T Consensus        25 ~~g~~~~A~-----~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           25 KKGDYPTAM-----RHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI---KGYIRKAACLVAMRE   96 (126)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHCCC
Confidence            667777774     455666666655 45578999999999999999999999999999985   589999999999999


Q ss_pred             hhHHHhhhC
Q 023871          268 VPLLLALIE  276 (276)
Q Consensus       268 ~~eAI~aLE  276 (276)
                      +++|++.++
T Consensus        97 ~~~A~~~~~  105 (126)
T 4gco_A           97 WSKAQRAYE  105 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.00  E-value=5.4e-10  Score=95.16  Aligned_cols=65  Identities=12%  Similarity=0.085  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------hh--HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------EE--SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------~e--~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...++..+++.|+.+|+.|+|++||.+|++||+++|++       ..  .+.+|+|++.|+.++|++++||.+.
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~   80 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA   80 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35578889999999999999999999999999999993       21  2459999999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.92  E-value=1.6e-09  Score=88.56  Aligned_cols=84  Identities=8%  Similarity=-0.032  Sum_probs=70.2

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..     |+++-++... ..-|+..|..++..|+|++|+..|++|+.++|++.   .+|||++.||.
T Consensus        44 ~~~~~~g~~~eA~~~-----~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~---~~~~~lg~~~~  115 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVF-----FRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY---TPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHTTCHHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHH
Confidence            344478888888554     4555555554 45688999999999999999999999999999996   58999999999


Q ss_pred             hcCChhHHHhhhC
Q 023871          264 KLNQVPLLLALIE  276 (276)
Q Consensus       264 KLgq~~eAI~aLE  276 (276)
                      ++|++++|+.+++
T Consensus       116 ~lg~~~eA~~~~~  128 (151)
T 3gyz_A          116 RLKAPLKAKECFE  128 (151)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999999998863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.90  E-value=2.5e-09  Score=91.09  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=68.8

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-------------REQDLREGLQLYRTGKYEVAREKFESVLGS-------KPT  247 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-------------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-------~P~  247 (276)
                      ...|++++++     ..|.++-++...             ..-|.+.|..+.++|+|++||..|++||++       +|+
T Consensus        22 ~~~g~~eeAi-----~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           22 LVAGEYDEAA-----ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHTCHHHHH-----HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHCCCHHHHH-----HHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            3678888884     556666666655             236889999999999999999999999999       999


Q ss_pred             hhhHHHHH----HHHhHHHHhcCChhHHHhhhC
Q 023871          248 PEESSVAS----YNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       248 ~~e~a~A~----YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.   .+|    ||++.|+..+|++++|+.+++
T Consensus        97 ~~---~A~~~~~~~rG~aL~~lgr~eEAl~~y~  126 (159)
T 2hr2_A           97 EG---KLWISAVYSRALALDGLGRGAEAMPEFK  126 (159)
T ss_dssp             HH---HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hH---HHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence            86   567    999999999999999999863

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.86  E-value=4.7e-09  Score=81.71  Aligned_cols=58  Identities=19%  Similarity=0.379  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++.+++.|+.+|+.|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|++.+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~   70 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---ILYSNRAACLTKLMEFQRALDDC   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHhhHHHhhccHHHHHHHH
Confidence            45677999999999999999999999999999996   68999999999999999999876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.83  E-value=6.8e-09  Score=78.16  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQ----KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kel----kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      ..|++++++.     .|+++.++    .....-++..|..++..|+|++|+..|++||+++|++.   .+++|++.||.+
T Consensus         2 ~~g~~~~A~~-----~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~   73 (117)
T 3k9i_A            2 VLGLEAQAVP-----YYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---ALRVFYAMVLYN   73 (117)
T ss_dssp             -----CCCHH-----HHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             CCCcHHHHHH-----HHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHH
Confidence            3577788854     45555555    33345678999999999999999999999999999995   689999999999


Q ss_pred             cCChhHHHhhh
Q 023871          265 LNQVPLLLALI  275 (276)
Q Consensus       265 Lgq~~eAI~aL  275 (276)
                      +|++++|+..|
T Consensus        74 ~g~~~~A~~~~   84 (117)
T 3k9i_A           74 LGRYEQGVELL   84 (117)
T ss_dssp             HTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99999999876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.82  E-value=7.9e-09  Score=74.54  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=46.1

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh---HHHHHHHHhHHHH
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYS  263 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e---~a~A~YN~AcCya  263 (276)
                      ...|++++++.     .|+++.++... ..-+++.|..+++.|+|++|+..|++||.++|++..   ...++++++.||.
T Consensus        15 ~~~~~~~~A~~-----~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           15 FKQGLYREAVH-----CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HTTTCHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            35555555533     33344444332 233556666666666666666666666666666521   1455666666666


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus        90 ~~~~~~~a~~~~  101 (111)
T 2l6j_A           90 AVGSVQIPVVEV  101 (111)
T ss_dssp             HHHCCCCCSSSS
T ss_pred             HHHhHhhhHhHH
Confidence            666666665544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=9.9e-09  Score=77.07  Aligned_cols=81  Identities=11%  Similarity=0.041  Sum_probs=66.6

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      -...|++++++.     .|.++-++... ..-++..|..+++.|+|++|+..|++||.++|++.   .+|+|++.||.++
T Consensus        14 ~~~~~~~~~A~~-----~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~   85 (126)
T 3upv_A           14 YFTKSDWPNAVK-----AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRKATAQIAV   85 (126)
T ss_dssp             HHHTTCHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHH
Confidence            347788888844     45555555544 35578999999999999999999999999999985   6899999999999


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++|+..+
T Consensus        86 ~~~~~A~~~~   95 (126)
T 3upv_A           86 KEYASALETL   95 (126)
T ss_dssp             TCHHHHHHHH
T ss_pred             hCHHHHHHHH
Confidence            9999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.74  E-value=3.7e-08  Score=73.89  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++.+++.|+.+++.|+|++|+..|++||.++|++.   .+|+|+|.||.++|++++|+..+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~   61 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---RGYSNRAAALAKLMSFPEAIADC   61 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            356788999999999999999999999999999985   68999999999999999999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.72  E-value=5.6e-08  Score=76.41  Aligned_cols=81  Identities=11%  Similarity=-0.037  Sum_probs=66.5

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHH------------------HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQ------------------KER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kel------------------kkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      ...|++++++..++.     +-++                  ... ..-+.+.|..++++|+|++|+..|++||.++|++
T Consensus        22 ~~~~~~~~A~~~y~~-----al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           22 FVQKDYKEAIDAYRD-----ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHTTCHHHHHHHHHH-----HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHcCCHHHHHHHHHH-----HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            378888888665554     4443                  222 2346799999999999999999999999999998


Q ss_pred             hhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          249 EESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       249 ~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .   .+||+++.||..+|++++|+..++
T Consensus        97 ~---~a~~~~g~~~~~~g~~~~A~~~~~  121 (162)
T 3rkv_A           97 E---KALFRRAKARIAAWKLDEAEEDLK  121 (162)
T ss_dssp             H---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHHhcHHHHHHHHH
Confidence            5   699999999999999999998763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.72  E-value=4.8e-08  Score=77.15  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++..|..+++.|+|++|+..|+++|+++|++.   .+|+|++.||.++|++++|+..+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI---RAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh---hHHHHHHHHHHHCCCHHHHHHHH
Confidence            357889999999999999999999999999986   58999999999999999999876

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.71  E-value=3.7e-08  Score=76.46  Aligned_cols=83  Identities=13%  Similarity=0.006  Sum_probs=68.0

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      .-...|++++++..++     +..++... ..-|+..|..++..|+|++|+..|++|+.++|++.   .+|+|++.||..
T Consensus        27 ~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~   98 (142)
T 2xcb_A           27 NQYQAGKWDDAQKIFQ-----ALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---RFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHH-----HHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHH
Confidence            3447888988866654     44444433 34577899999999999999999999999999996   589999999999


Q ss_pred             cCChhHHHhhhC
Q 023871          265 LNQVPLLLALIE  276 (276)
Q Consensus       265 Lgq~~eAI~aLE  276 (276)
                      +|++++|+..++
T Consensus        99 ~g~~~~A~~~~~  110 (142)
T 2xcb_A           99 LGDLDGAESGFY  110 (142)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            999999998763

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.71  E-value=3.6e-08  Score=78.51  Aligned_cols=84  Identities=12%  Similarity=0.011  Sum_probs=68.5

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++     ++-++... ..-|+..|..++..|+|++|+..|++|+.++|++.   .+|||++.||.
T Consensus        29 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~  100 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQ-----ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHAAECLL  100 (148)
T ss_dssp             HHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHH-----HHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHH
Confidence            33447888888865554     44444433 34578999999999999999999999999999986   58999999999


Q ss_pred             hcCChhHHHhhhC
Q 023871          264 KLNQVPLLLALIE  276 (276)
Q Consensus       264 KLgq~~eAI~aLE  276 (276)
                      .+|++++|+..++
T Consensus       101 ~~g~~~~A~~~~~  113 (148)
T 2vgx_A          101 QXGELAEAESGLF  113 (148)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999999998763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.71  E-value=5.3e-09  Score=81.12  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=67.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHHHHHHhHHHH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVASYNVACCYS  263 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A~YN~AcCya  263 (276)
                      ..|++++|+     ..|.++-++... ..-+.+.|..++++|+|++||..|++||+++|+..    ....+|+|++.||.
T Consensus        20 ~~~~~~~A~-----~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           20 KQKDFEKAH-----VHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHH-----HHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            566777774     556666666655 34567999999999999999999999999988763    23678999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .++++++|++.+
T Consensus        95 ~~~~~~~A~~~~  106 (127)
T 4gcn_A           95 KQNDLSLAVQWF  106 (127)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            999999999865

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.71  E-value=2.9e-08  Score=78.03  Aligned_cols=63  Identities=17%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CCCh-------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGS--------KPTP-------EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i--------~P~~-------~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++.+++.|+.+|+.|+|++|+..|++||.+        +|.+       +....+|+|+|.||.++|++++|+..+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            34566789999999999999999999999988        4443       223678999999999999999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.69  E-value=5.3e-08  Score=76.67  Aligned_cols=83  Identities=11%  Similarity=-0.080  Sum_probs=68.3

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++     ++.++... ..-++..|..+++.|+|++|+..|++||.++|++.   .+|+|++.||.
T Consensus        19 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~   90 (164)
T 3sz7_A           19 NAAMARKEYSKAIDLYT-----QALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS---KAWSRLGLARF   90 (164)
T ss_dssp             HHHHHTTCHHHHHHHHH-----HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH-----HHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence            34447889988865554     44444433 34567999999999999999999999999999985   68999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus        91 ~~g~~~~A~~~~  102 (164)
T 3sz7_A           91 DMADYKGAKEAY  102 (164)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HccCHHHHHHHH
Confidence            999999999876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.67  E-value=3.4e-08  Score=73.32  Aligned_cols=58  Identities=12%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..++..|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.++|++++|++.++
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~   65 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV---GTYYHLGKLYERLDRTDDAIDTYA   65 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4467999999999999999999999999999986   589999999999999999998763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.66  E-value=1.4e-08  Score=82.96  Aligned_cols=70  Identities=13%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+++.++...- +.++..|..+++.|+|++|+..|++|+.++|++.   .+|+|++.||.++|++++|++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---DYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHccHHHHHHHH
Confidence            3455666666653 5678999999999999999999999999999996   58999999999999999999876

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.65  E-value=7.6e-08  Score=71.97  Aligned_cols=82  Identities=20%  Similarity=0.400  Sum_probs=61.6

Q ss_pred             cceEEEEecC----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           84 YEEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        84 ~~~y~V~l~K----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      ++.++|+|.|    ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+++...   .+=. .....+...++...
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~~   78 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE---DVRN-ATQEAVAALLKCSL   78 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHHCC
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCC
Confidence            4678999987    4889987764 359999999999999999999999999998753   1111 11345566666656


Q ss_pred             CceEEEEeecC
Q 023871          159 GPLLMKMQKRY  169 (276)
Q Consensus       159 gpv~L~l~R~~  169 (276)
                      +++.|.+.|+-
T Consensus        79 ~~v~l~v~R~~   89 (92)
T 2qg1_A           79 GTVTLEVGRIS   89 (92)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEccc
Confidence            78999998853

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.64  E-value=4.1e-08  Score=77.89  Aligned_cols=67  Identities=15%  Similarity=0.015  Sum_probs=38.5

Q ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      .|+++-++... .+.++..|..+++.|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|+.
T Consensus        53 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           53 YICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK---DLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHH
Confidence            34444444433 23345666666666666666666666666666654   356666666666666655543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.63  E-value=5.9e-08  Score=71.92  Aligned_cols=87  Identities=10%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq----ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac  260 (276)
                      ..-...|++++++..++.     ..+....    .+.++..|..+++.|+|++|+..|++++...|++.....++++++.
T Consensus        10 ~~~~~~~~~~~A~~~~~~-----~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLS-----FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHH-----HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            344467888888776665     2221111    1346789999999999999999999999999998655678999999


Q ss_pred             HHHhcCChhHHHhhhC
Q 023871          261 CYSKLNQVPLLLALIE  276 (276)
Q Consensus       261 CyaKLgq~~eAI~aLE  276 (276)
                      ||.++|++++|+..++
T Consensus        85 ~~~~~g~~~~A~~~~~  100 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQ  100 (129)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999998763

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.63  E-value=1.2e-07  Score=71.48  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             cceEEEEecCc-----ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           84 YEEYEVEIEQP-----YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        84 ~~~y~V~l~KP-----LGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      ++.++|+|.|+     +|+.+.... +.+++|..|.|+|.|+++|.|++||+|+.+...   .+= ....-.+...++..
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~-~~~~~~~~~~~~~~   77 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH---DLK-YGTPELAAQIIQAS   77 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHHC
T ss_pred             cEEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHcC
Confidence            36789999973     899997764 449999999999999999999999999998742   221 11223455566655


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..++.|.+.|..
T Consensus        78 g~~v~l~v~R~~   89 (95)
T 2vwr_A           78 GERVNLTIARPG   89 (95)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCEEEEEEEcCC
Confidence            678899999853

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.62  E-value=5.7e-08  Score=74.84  Aligned_cols=84  Identities=11%  Similarity=-0.014  Sum_probs=69.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..+     +++-++... .+.|+..|..++..|+|++|+..|++||+++|++.   .+|+|++.||.
T Consensus        25 ~~~~~~g~~~~A~~~~-----~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~la~~~~   96 (121)
T 1hxi_A           25 LSMLKLANLAEAALAF-----EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSHT   96 (121)
T ss_dssp             HHHHHTTCHHHHHHHH-----HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence            4445778888885554     455555443 45678999999999999999999999999999986   58999999999


Q ss_pred             hcCChhHHHhhhC
Q 023871          264 KLNQVPLLLALIE  276 (276)
Q Consensus       264 KLgq~~eAI~aLE  276 (276)
                      ++|++++|+..++
T Consensus        97 ~~g~~~~A~~~~~  109 (121)
T 1hxi_A           97 NEHNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999999998763

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.60  E-value=8.5e-08  Score=75.49  Aligned_cols=59  Identities=19%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..+.++..|+.+++.|+|++|+..|++||.++|++.   .+|+|++.||.++|++++|+..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~   68 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---IYLSNRAAAYSASGQHEKAAEDA   68 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---HHHHHHHHHHHHccCHHHHHHHH
Confidence            456678999999999999999999999999999985   68999999999999999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=1.8e-07  Score=66.20  Aligned_cols=84  Identities=13%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--hhhHHHHHHHHhH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEESSVASYNVAC  260 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~~e~a~A~YN~Ac  260 (276)
                      ...-...|++++++..++     ++.++... ..-++..|..++..|+|++|+..|++++.++|+  +.   .+|+++|.
T Consensus        13 ~~~~~~~~~~~~A~~~~~-----~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~l~~   84 (112)
T 2kck_A           13 GVLQYDAGNYTESIDLFE-----KAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK---DVWAAKAD   84 (112)
T ss_dssp             HHHHHSSCCHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH---HHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHH-----HHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH---HHHHHHHH
Confidence            344557788888855554     33333322 344678999999999999999999999999999  54   68999999


Q ss_pred             HHHhc-CChhHHHhhh
Q 023871          261 CYSKL-NQVPLLLALI  275 (276)
Q Consensus       261 CyaKL-gq~~eAI~aL  275 (276)
                      ||.++ |++++|++.|
T Consensus        85 ~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             HHTTCSSCSHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHH
Confidence            99999 9999999876

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.57  E-value=2e-07  Score=70.28  Aligned_cols=80  Identities=20%  Similarity=0.388  Sum_probs=63.4

Q ss_pred             ceEEEEecC---cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHH
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYT  153 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~a  153 (276)
                      +.++|+|.|   ++|+.+..+.      +.+++|..|.|++.|+++|.|++||+|+.+...      +..+  +..+...
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~   76 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI------RLLGTTHAEAMSI   76 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECSSCCHHHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE------ECCCCCHHHHHHH
Confidence            568888887   6899998764      349999999999999999999999999998742      2233  5566777


Q ss_pred             hhcccCceEEEEeecCC
Q 023871          154 IRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       154 ir~r~gpv~L~l~R~~~  170 (276)
                      |+....++.|.+.|...
T Consensus        77 l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           77 LKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             HHHSCSEEEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeCCC
Confidence            77756788999999654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.8e-07  Score=69.96  Aligned_cols=84  Identities=8%  Similarity=-0.003  Sum_probs=69.0

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq----ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A  259 (276)
                      ...-...|++++++..++.     ..++...    ..-++..|..++..|+|++|+..|++++.++|++.   .+|++++
T Consensus        35 a~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a  106 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQ-----ALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV---KALYRRS  106 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH---HHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHH-----HHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH---HHHHHHH
Confidence            3445589999999665554     3333322    45678999999999999999999999999999884   6899999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|+..+
T Consensus       107 ~~~~~~~~~~~A~~~~  122 (148)
T 2dba_A          107 QALEKLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            9999999999999876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.56  E-value=2.3e-07  Score=69.44  Aligned_cols=84  Identities=8%  Similarity=-0.061  Sum_probs=68.3

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     +.++... ..-++..|..++..|+|++|+..|++|+.++|++.   .+|+|++.||
T Consensus        16 g~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~   87 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGR-----AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHH-----HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH---HHHHHHHHHH
Confidence            3445578888888665544     4444333 34567999999999999999999999999999985   5899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|+..+
T Consensus        88 ~~~~~~~~A~~~~  100 (137)
T 3q49_B           88 LEMESYDEAIANL  100 (137)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHH
Confidence            9999999999876

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.55  E-value=2e-07  Score=70.99  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=62.8

Q ss_pred             ccccceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           81 EEKYEEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        81 ~~~~~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +..++.++|+|.|    .+|+.+.. .+.+++|..|.|+|.|+++|.|++||+|+++...   .+-.. ..-.+...++.
T Consensus         4 ~~~~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~---~v~~~-~~~~~~~~~~~   78 (96)
T 2qkv_A            4 RNSLEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVSYALFKG   78 (96)
T ss_dssp             CCCCCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTE---ECTTC-CHHHHHHHHHT
T ss_pred             hHHCceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHhc
Confidence            3456778999965    68888766 4568999999999999999999999999998743   22111 12344556666


Q ss_pred             ccCceEEEEeecC
Q 023871          157 RVGPLLMKMQKRY  169 (276)
Q Consensus       157 r~gpv~L~l~R~~  169 (276)
                      ..+++.|.+.|+.
T Consensus        79 ~~~~v~l~v~R~~   91 (96)
T 2qkv_A           79 ANGKVSMEVTRPK   91 (96)
T ss_dssp             CSSEEEEEEECCC
T ss_pred             CCCcEEEEEEeCC
Confidence            6688999999864

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.54  E-value=2.7e-07  Score=69.88  Aligned_cols=81  Identities=21%  Similarity=0.439  Sum_probs=62.2

Q ss_pred             ceEEEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      +.++|+|.|   ++|+.+....+  ++++|..|.|++.|+++|.|++||+|+++-..   .+-. ..+..+...++....
T Consensus         5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~g~   80 (97)
T 1n7e_A            5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSS---SLKG-KPLSEAIHLLQMAGE   80 (97)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCCS
T ss_pred             eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence            678999987   68899877654  69999999999999999999999999998753   3311 124556667775456


Q ss_pred             ceEEEEeecC
Q 023871          160 PLLMKMQKRY  169 (276)
Q Consensus       160 pv~L~l~R~~  169 (276)
                      ++.|.+.|..
T Consensus        81 ~v~l~v~R~~   90 (97)
T 1n7e_A           81 TVTLKIKKQT   90 (97)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            7899998843

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.54  E-value=1.1e-07  Score=68.48  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHH-HHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV-ASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~-A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++.|..+++.|+|++|+..|+++++++|++.   . +|+|+|.||.++|++++|+..+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~lg~~~~~~~~~~~A~~~~   58 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGK---DEAYYLMGNAYRKLGDWQKALNNY   58 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5788899999999999999999999999885   5 8999999999999999998876

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=4.9e-07  Score=69.55  Aligned_cols=84  Identities=23%  Similarity=0.445  Sum_probs=65.0

Q ss_pred             ccceEEEEec---CcceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           83 KYEEYEVEIE---QPYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        83 ~~~~y~V~l~---KPLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      ..+.++|+|.   +++|+.+..+.+        .++||..|.+++.|+++|.|++||+|+.+...   .+= ...+..+.
T Consensus         5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~-~~~~~~~~   80 (105)
T 1wha_A            5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV---DVT-EARHDHAV   80 (105)
T ss_dssp             CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSC---BCT-TCCHHHHH
T ss_pred             CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHH
Confidence            4577889885   468899987543        59999999999999999999999999998742   221 11255677


Q ss_pred             HHhhcccCceEEEEeecCC
Q 023871          152 YTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~~~  170 (276)
                      ..|+....++.|.+.|...
T Consensus        81 ~~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           81 SLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             HHHTSCCSCEEEEEEECCC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            7787667789999999753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.53  E-value=2.7e-07  Score=76.81  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             hhcCCCcchhHHHHHH-----HH-------HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHH
Q 023871          187 ERNSGVISNRVREIQM-----QN-------YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV  253 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~-----~n-------Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~  253 (276)
                      .++.|++++++..++.     ++       +.+...+.... +..+..|..+++.|+|++|+..|+++|+..|+++....
T Consensus       106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  185 (225)
T 2yhc_A          106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD  185 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence            3467788888888877     11       22333333332 22357888999999999999999999999999987778


Q ss_pred             HHHHHhHHHHhcCChhHHHhhh
Q 023871          254 ASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       254 A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++++.||.++|++++|++.+
T Consensus       186 a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          186 ALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHH
Confidence            9999999999999999999876

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.53  E-value=7.5e-07  Score=68.31  Aligned_cols=80  Identities=19%  Similarity=0.340  Sum_probs=59.1

Q ss_pred             eEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-
Q 023871           86 EYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-  156 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-  156 (276)
                      ..+|+|.|    +||+.+.....|    +++|..|.+++.|+++|.|++||+|+++..   ..+ .-..+.++...|+. 
T Consensus        10 ~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing---~~v-~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A           10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING---TSL-VGLPLAACQAAVRET   85 (101)
T ss_dssp             CEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESS---CBC-TTSCHHHHHHHHHHT
T ss_pred             eEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhC
Confidence            34556553    799999765544    799999999999999777999999999863   344 00234456667775 


Q ss_pred             -ccCceEEEEeecC
Q 023871          157 -RVGPLLMKMQKRY  169 (276)
Q Consensus       157 -r~gpv~L~l~R~~  169 (276)
                       ...++.|++.|..
T Consensus        86 ~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           86 KSQTSVTLSIVHCP   99 (101)
T ss_dssp             TTSSEEEEEECCCC
T ss_pred             CCCCeEEEEEEeCC
Confidence             4567899999865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.52  E-value=8.3e-08  Score=76.12  Aligned_cols=79  Identities=8%  Similarity=0.106  Sum_probs=62.7

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++++..++     ++-....+. ..++.-|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.++|+
T Consensus         9 ~~~~~e~ai~~~~-----~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            9 SKADVERYIASVQ-----GSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---KAHRFLGLLYELEEN   80 (150)
T ss_dssp             CHHHHHHHHHHHH-----HHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HcChHHHHHHHHH-----HhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCc
Confidence            4455566655444     333333332 3457889999999999999999999999999996   689999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+..+
T Consensus        81 ~~~A~~~~   88 (150)
T 4ga2_A           81 TDKAVECY   88 (150)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999876

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.51  E-value=2.8e-07  Score=71.74  Aligned_cols=78  Identities=17%  Similarity=0.340  Sum_probs=59.9

Q ss_pred             EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ..|+|.|    +||+.+....+++++|..|.|+|.|+++|.|++||+|+.+...   .+.. ..+..+...|+...+++.
T Consensus        14 ~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~---~v~~-~~~~~~~~~l~~~~~~v~   89 (97)
T 2ejy_A           14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGT---NVTN-HSVDQLQKAMKETKGMIS   89 (97)
T ss_dssp             EEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTB---CCCS-SCSHHHHHHHHHCCEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCeEE
Confidence            3566665    8899998766789999999999999999999999999998742   3321 124556667776567888


Q ss_pred             EEEeec
Q 023871          163 MKMQKR  168 (276)
Q Consensus       163 L~l~R~  168 (276)
                      |++.+.
T Consensus        90 L~V~~~   95 (97)
T 2ejy_A           90 LKVIPN   95 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            888764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.51  E-value=1.3e-07  Score=75.30  Aligned_cols=68  Identities=18%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          205 YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       205 Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+++.++... .+.++..|..+++.|+|++|+..|++|+.++|++.   .+|+|++.||.++|++++|+.++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~   78 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---RFFLGLGACRQAMGQYDLAIHSY   78 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence            4555554443 35567999999999999999999999999999986   68999999999999999999876

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.50  E-value=3.9e-07  Score=68.03  Aligned_cols=81  Identities=19%  Similarity=0.427  Sum_probs=61.7

Q ss_pred             cceEEEEecCc---ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           84 YEEYEVEIEQP---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        84 ~~~y~V~l~KP---LGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      .+.++|+|.|+   +|+.+....      +++++|..|.+++.|+++|.|++||+|+++...   .+= ...+..+...+
T Consensus         3 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~~   78 (97)
T 2iwn_A            3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGT---NLQ-GFTNQQAVEVL   78 (97)
T ss_dssp             EEEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTE---ECT-TSCHHHHHHHH
T ss_pred             cEEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHH
Confidence            46788999887   899998762      469999999999999999999999999998752   111 01233556666


Q ss_pred             hcccCceEEEEeec
Q 023871          155 RQRVGPLLMKMQKR  168 (276)
Q Consensus       155 r~r~gpv~L~l~R~  168 (276)
                      +....++.|.+.|.
T Consensus        79 ~~~~~~v~l~v~r~   92 (97)
T 2iwn_A           79 RHTGQTVLLTLMRR   92 (97)
T ss_dssp             HTCCSEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeC
Confidence            66567789999874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=1.9e-07  Score=69.83  Aligned_cols=61  Identities=30%  Similarity=0.396  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|..++..|+|++|+..|++++.++|++.....+|+|+|.||.+++++++|+..+
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   88 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA   88 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3456688999999999999999999999999998666788999999999999999998865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.49  E-value=2.5e-07  Score=69.20  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|..+++.|+|++|+..|+++|.++|++.   .+|+|++.||.++|++++|+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~   66 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---VYYTNRALCYLKMQQPEQALADC   66 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            45678999999999999999999999999999985   68999999999999999999876

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.48  E-value=9.8e-07  Score=69.02  Aligned_cols=81  Identities=15%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             ceEEEEec----CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~----KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      +.++|+|.    ..+|+.+.. .+.|++|..|.|||.|+++|.|++||+|+++...   .+-.. ..-.+...++...++
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~---~v~~~-~~~~~~~~~~~~~~~   76 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVCYALFKGANGK   76 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSC---BCSSS-CHHHHHHHHHSCBSC
T ss_pred             eEEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHhCCCCe
Confidence            56888887    358888876 4568999999999999999999999999997643   33221 123445566766788


Q ss_pred             eEEEEeecCC
Q 023871          161 LLMKMQKRYG  170 (276)
Q Consensus       161 v~L~l~R~~~  170 (276)
                      +.|.+.|+..
T Consensus        77 v~l~v~R~~~   86 (106)
T 2la8_A           77 VSMEVTRPKP   86 (106)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEeCCC
Confidence            9999999643

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.47  E-value=6.5e-07  Score=69.02  Aligned_cols=85  Identities=28%  Similarity=0.501  Sum_probs=64.6

Q ss_pred             cccceEEEEecC---cceeEEe-----ee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           82 EKYEEYEVEIEQ---PYGLKFA-----KG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~-----e~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      .+.+.++|+|.|   +||+.+.     .+     .++++||..|.++|.|+++|.|++||+|+.+...   .+=. ..+-
T Consensus         6 ~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~   81 (108)
T 1q7x_A            6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV---SLEG-ATHK   81 (108)
T ss_dssp             CSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTE---ECBS-CTTS
T ss_pred             CCCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCC-CCHH
Confidence            345779999976   7999998     32     2469999999999999999999999999998742   2211 1444


Q ss_pred             hHHHHhhcccCceEEEEeecCC
Q 023871          149 RTMYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~~  170 (276)
                      .+...++....++.|.+.|...
T Consensus        82 ~~~~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           82 QAVETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHHHHHHTTSEEEEEEECCCC
T ss_pred             HHHHHHHcCCCeEEEEEEeCCc
Confidence            5666777656788999998544

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.47  E-value=8e-07  Score=67.09  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=62.0

Q ss_pred             ceEEEEecC---cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhc
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~  156 (276)
                      ++++|+|.|   ++|+.+..+.+   ++++|..|.+++.|+++|.|++||+|+++...      +..+  +.+++..++.
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~~~~   77 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI------DLRKATHDEAINVLRQ   77 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECTTCCHHHHHHHHHT
T ss_pred             CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHh
Confidence            457788865   58899987755   79999999999999999999999999998742      2222  3456667775


Q ss_pred             ccCceEEEEeecCC
Q 023871          157 RVGPLLMKMQKRYG  170 (276)
Q Consensus       157 r~gpv~L~l~R~~~  170 (276)
                      ...++.|.+.|...
T Consensus        78 ~~~~v~l~v~R~~~   91 (98)
T 2opg_A           78 TPQRVRLTLYRDEA   91 (98)
T ss_dssp             CCSEEEEEEEECSS
T ss_pred             CCCeEEEEEEcCCC
Confidence            55789999988544

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.47  E-value=7.1e-07  Score=66.49  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=59.8

Q ss_pred             ccceEEEEecC-----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        83 ~~~~y~V~l~K-----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.+.++|+|.|     .+|+.+..+. +.+++|..|.+++.|+++| |++||+|+.+...   .+-... .-..+..++.
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~~~-~~~~~~~~~~   78 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHV---RTRDFD-CCLVVPLIAE   78 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCC-HHHHHHHHHT
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHc
Confidence            45778899986     6899998764 4599999999999999999 9999999998753   221111 1234445555


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                      ...++.|.+.|.
T Consensus        79 ~g~~v~l~v~R~   90 (91)
T 1m5z_A           79 SGNKLDLVISRN   90 (91)
T ss_dssp             STTEEEEEEEEC
T ss_pred             CCCEEEEEEEeC
Confidence            456789999885

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.47  E-value=2e-07  Score=73.54  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +++.|+.+++.|+|++|+..|++||+++|++.   .+|++++.||.++|++++|+..+
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~a~~~~   62 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV---ETLLKLGKTYMDIGLPNDAIESL   62 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence            45667777777777777777777777777764   46777777777777777776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.47  E-value=2.5e-07  Score=66.51  Aligned_cols=58  Identities=21%  Similarity=0.344  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|+.++..|+|++|+..|++||.++|++.   .+|+|++.||.++|++++|+..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~   61 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---VGYSNKAMALIKLGEYTQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            45678999999999999999999999999999985   68999999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.47  E-value=2.4e-07  Score=71.31  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .++..|..+++.|+|++|+..|++||.++|++.   .+|++++.||..+|++++|+.+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~   75 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAENEKDGLAIIALN   75 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            367899999999999999999999999999986   689999999999999999998763

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.46  E-value=5.5e-07  Score=68.52  Aligned_cols=83  Identities=23%  Similarity=0.415  Sum_probs=61.5

Q ss_pred             cccceEEEEecC---cceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           82 EKYEEYEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .+.+..+|+|.|   ++|+.+..+.++ +++|..|.|++.|+++|.|++||+|+++...   .+-. ...-.+...++..
T Consensus         8 ~~~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~   83 (104)
T 3i4w_A            8 IPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRN-ASHEQAAIALKNA   83 (104)
T ss_dssp             CCSSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTE---ECTT-CCHHHHHHHHHTS
T ss_pred             CCCccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcC
Confidence            444567777776   788999887666 9999999999999999999999999998642   3311 1223445566665


Q ss_pred             cCceEEEEeec
Q 023871          158 VGPLLMKMQKR  168 (276)
Q Consensus       158 ~gpv~L~l~R~  168 (276)
                      ..++.|.+.|.
T Consensus        84 ~~~v~l~v~r~   94 (104)
T 3i4w_A           84 GQTVTIIAQYK   94 (104)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEC
Confidence            67889999884

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.46  E-value=5.5e-07  Score=70.13  Aligned_cols=82  Identities=23%  Similarity=0.432  Sum_probs=63.6

Q ss_pred             ceEEEEecC----cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.++|+|.|    +||+.+..+.    +.++||..|.|+|.|+++|.|++||+|+.+-..   .+-. ..+..+...|+.
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l~~   80 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM---NFEN-MSNDDAVRVLRD   80 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ETTS-CCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHh
Confidence            678899885    6999998763    469999999999999999999999999998743   2211 125566777775


Q ss_pred             c---cCceEEEEeecCC
Q 023871          157 R---VGPLLMKMQKRYG  170 (276)
Q Consensus       157 r---~gpv~L~l~R~~~  170 (276)
                      .   .++|.|++.|+.-
T Consensus        81 ~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           81 IVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             HHTSSSCEEEEEECCCC
T ss_pred             cccCCCeEEEEEEeCCC
Confidence            3   6789999999643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.46  E-value=3.5e-07  Score=70.90  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|..+++.|+|++|+..|++++.++|++.   .+|++++.||.++|++++|+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~   75 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---RYFLGLGACRQSLGLYEQALQSY   75 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence            34567999999999999999999999999999986   58999999999999999999876

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.46  E-value=6.2e-07  Score=71.32  Aligned_cols=85  Identities=24%  Similarity=0.422  Sum_probs=65.5

Q ss_pred             cccceEEEEecC----cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           82 EKYEEYEVEIEQ----PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        82 ~~~~~y~V~l~K----PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      ...+.++|+|.|    +||+.+...       .+++++|..|.+++.|+++|.|++||+|+++...   .+-. ..+.++
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~   87 (129)
T 2dmz_A           12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV---NIQG-FANHDV   87 (129)
T ss_dssp             CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTB---CCTT-CCHHHH
T ss_pred             CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHH
Confidence            456889999955    789999874       3469999999999999999999999999998753   2211 114566


Q ss_pred             HHHhhcccCceEEEEeecCC
Q 023871          151 MYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~~~  170 (276)
                      ..+|+....++.|.+.|.-.
T Consensus        88 ~~~l~~~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           88 VEVLRNAGQVVHLTLVRRKT  107 (129)
T ss_dssp             HHHHHHCCSSEEEEEEEESS
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            67777666788999998654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.46  E-value=5.7e-07  Score=63.98  Aligned_cols=83  Identities=13%  Similarity=0.027  Sum_probs=66.7

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     ..++.. ...-++..|..++..|+|++|+..|++++.++|++.   .+++|++.||.
T Consensus        12 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~   83 (118)
T 1elw_A           12 NKALSVGNIDDALQCYSE-----AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYSRKAAALE   83 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHH-----HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH
Confidence            444578888888666555     333322 134467889999999999999999999999999875   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|++.+
T Consensus        84 ~~~~~~~A~~~~   95 (118)
T 1elw_A           84 FLNRFEEAKRTY   95 (118)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HHhhHHHHHHHH
Confidence            999999999875

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.45  E-value=1.2e-06  Score=70.46  Aligned_cols=84  Identities=17%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             cccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           82 EKYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      .+.+.++|+|.|   ++|+.+..+.+     .++||..|.+|+.|+++|.|++||+|+.|-..   .+-.. .+.++...
T Consensus        26 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~---~v~~~-~~~~~~~~  101 (130)
T 1i16_A           26 AEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT---AMQGL-TRFEAWNI  101 (130)
T ss_dssp             SSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSC---BGGGS-CHHHHHHH
T ss_pred             CCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHH
Confidence            345667888887   89999987655     48999999999999999669999999998753   22111 34567778


Q ss_pred             hhccc-CceEEEEeecC
Q 023871          154 IRQRV-GPLLMKMQKRY  169 (276)
Q Consensus       154 ir~r~-gpv~L~l~R~~  169 (276)
                      |+... .++.|++.|+-
T Consensus       102 l~~~~~~~v~l~v~r~~  118 (130)
T 1i16_A          102 IKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             HHTSCSSEEEEEEEEES
T ss_pred             HHhCCCceEEEEEEeCC
Confidence            88654 45999999873

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.45  E-value=4.1e-07  Score=63.37  Aligned_cols=56  Identities=23%  Similarity=0.322  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++..|..++..|+|++|+..|++|+.++|++.   .+|+|++.||.++|++++|+..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~   66 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAYYKQGDYDEAIEYY   66 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence            345666777777777777777777777777664   46777777777777777776654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.45  E-value=6.5e-07  Score=74.04  Aligned_cols=81  Identities=16%  Similarity=0.049  Sum_probs=64.9

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHH----------------HHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKERR-EQDLR----------------EGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~----------------eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      ...|++++++..++.     +-++...- +.++.                .|..+++.|+|++|+..|++||+++|++. 
T Consensus        15 ~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-   88 (208)
T 3urz_A           15 IEAGQNGQAVSYFRQ-----TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV-   88 (208)
T ss_dssp             HHTTCHHHHHHHHHH-----HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-
T ss_pred             HHCCCHHHHHHHHHH-----HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-
Confidence            378899998766654     33333322 22344                89999999999999999999999999996 


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                        .+|+|++.||..+|++++|+..++
T Consensus        89 --~~~~~lg~~~~~~g~~~~A~~~~~  112 (208)
T 3urz_A           89 --DCLEACAEMQVCRGQEKDALRMYE  112 (208)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHH
Confidence              689999999999999999998763

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.44  E-value=5.8e-07  Score=69.34  Aligned_cols=85  Identities=18%  Similarity=0.356  Sum_probs=63.4

Q ss_pred             cccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      ...+.+.|+|.|   +||+.+...        .+.++||..|.|++.|+++|.|++||+|+.+...   .+=. ...-.+
T Consensus         6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~   81 (107)
T 1wf8_A            6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI---SLVG-VTQNFA   81 (107)
T ss_dssp             CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTE---ECBS-CCHHHH
T ss_pred             CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHH
Confidence            356778888855   788998872        2458999999999999999999999999998742   2211 123345


Q ss_pred             HHHhhcccCceEEEEeecCC
Q 023871          151 MYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~~~  170 (276)
                      ...++....++.|++.|...
T Consensus        82 ~~~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           82 ATVLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHHHHCCSEEEEEEEEECC
T ss_pred             HHHHhcCCCeEEEEEEeCCC
Confidence            56677656789999998644

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=3.3e-07  Score=67.80  Aligned_cols=58  Identities=22%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..+++.|+|++|+..|++++...|++.....++++++.||.++|++++|+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   62 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQF   62 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            5688999999999999999999999999998766679999999999999999999876

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.44  E-value=3.7e-07  Score=68.71  Aligned_cols=76  Identities=20%  Similarity=0.399  Sum_probs=58.7

Q ss_pred             EEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCce
Q 023871           88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPL  161 (276)
Q Consensus        88 ~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv  161 (276)
                      .|+|.|    ++|+.+..+.+|+++|..|.++|.|++++.+++||+|+++...      +..  .+.++...|+...+++
T Consensus         4 ~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~~~v   77 (88)
T 1kwa_A            4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI------SVANQTVEQLQKMLREMRGSI   77 (88)
T ss_dssp             EEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTE------EGGGSCHHHHHHHHHHCCEEE
T ss_pred             EEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCcE
Confidence            355544    5899998766789999999999999995559999999998642      233  4556777788766789


Q ss_pred             EEEEeecC
Q 023871          162 LMKMQKRY  169 (276)
Q Consensus       162 ~L~l~R~~  169 (276)
                      .|++.|+.
T Consensus        78 ~l~v~r~~   85 (88)
T 1kwa_A           78 TFKIVPSY   85 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCc
Confidence            99998854

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.44  E-value=4.1e-07  Score=74.38  Aligned_cols=82  Identities=11%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQK--ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelk--kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      .-...|++++++..+     .++.++.  .....++..|..++..|+|++|+..|++|+.++|++.   .+|+++|.||.
T Consensus        16 ~~~~~~~~~~A~~~~-----~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~   87 (228)
T 4i17_A           16 DALNAKNYAVAFEKY-----SEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA---NAYIGKSAAYR   87 (228)
T ss_dssp             HHHHTTCHHHHHHHH-----HHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH---HHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHH-----HHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH---HHHHHHHHHHH
Confidence            334788888885554     4455554  2345567899999999999999999999999999985   68999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus        88 ~~~~~~~A~~~~   99 (228)
T 4i17_A           88 DMKNNQEYIATL   99 (228)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcccHHHHHHHH
Confidence            999999999876

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.44  E-value=3.8e-07  Score=72.09  Aligned_cols=79  Identities=23%  Similarity=0.359  Sum_probs=62.5

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHHhhc--c
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTIRQ--R  157 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~air~--r  157 (276)
                      +..+|+|.|   |||+.+..+.+|.+||..|.+||-|+++|.|.+||.|+.|-..   .|  |+-   .++...++.  .
T Consensus         5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~---~v~g~~h---~evv~lLk~~~~   78 (95)
T 3gge_A            5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGE---NIVGWRH---YDVAKKLKELKK   78 (95)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTE---ECTTCCH---HHHHHHHHHSCT
T ss_pred             eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCE---EccCCCH---HHHHHHHHhCCC
Confidence            457788876   9999998767789999999999999999999999999998763   22  222   356666674  3


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..+++|+|-+|-
T Consensus        79 g~~~~L~lv~p~   90 (95)
T 3gge_A           79 EELFTMKLIEPK   90 (95)
T ss_dssp             TCEEEEEEEEEC
T ss_pred             CCEEEEEEECcc
Confidence            457899998874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.44  E-value=5.6e-07  Score=72.87  Aligned_cols=63  Identities=21%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-------------HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-------------SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-------------a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..+.++..|+.+++.|+|++|+..|++||.+.|++.+.             ..+|+|+|.||.++|++++|+..+
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            344567799999999999999999999999998887521             378999999999999999999875

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.44  E-value=1e-06  Score=67.93  Aligned_cols=86  Identities=16%  Similarity=0.388  Sum_probs=64.9

Q ss_pred             ccceEEEEecC---cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      ..+.++|+|.|   ++|+.+..+.          +.++||..|.+++.|+++|.|++||+|+.+-..   .+ ....+-.
T Consensus         6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~---~v-~~~~~~~   81 (107)
T 1uhp_A            6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR---DL-SRATHDQ   81 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTE---EC-TTCCHHH
T ss_pred             CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHH
Confidence            45778999986   5999997643          459999999999999999449999999997642   22 1223445


Q ss_pred             HHHHhhcccCceEEEEeecCCCc
Q 023871          150 TMYTIRQRVGPLLMKMQKRYGKM  172 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R~~~~~  172 (276)
                      ++..|+...+++.|.+.|+....
T Consensus        82 ~~~~~~~~~~~v~l~v~R~~~~~  104 (107)
T 1uhp_A           82 AVEAFKTAKEPIVVQVLRRTSGP  104 (107)
T ss_dssp             HHHHHHHCCSSEEEEEEECCSSC
T ss_pred             HHHHHHcCCCcEEEEEEeCCCCC
Confidence            66777766678999998865443

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.44  E-value=9.9e-07  Score=67.17  Aligned_cols=84  Identities=25%  Similarity=0.413  Sum_probs=63.2

Q ss_pred             cceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           84 YEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        84 ~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      .+.++|+|.|   +||+.+..+.       +.+++|..|.++|.|+++|.|++||+|+.+...   .+-. ..+..++..
T Consensus         3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~   78 (102)
T 2i1n_A            3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV---DVSE-VVHSRAVEA   78 (102)
T ss_dssp             EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECSS-CCHHHHHHH
T ss_pred             ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHH
Confidence            3557788875   6889998753       359999999999999999999999999998742   2211 124456667


Q ss_pred             hhcccCceEEEEeecCCC
Q 023871          154 IRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus       154 ir~r~gpv~L~l~R~~~~  171 (276)
                      ++....++.|.+.|....
T Consensus        79 ~~~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           79 LKEAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             HHHSCSEEEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCCCC
Confidence            776567889999986543

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.44  E-value=7.4e-07  Score=71.20  Aligned_cols=87  Identities=21%  Similarity=0.358  Sum_probs=65.0

Q ss_pred             ccccccceEEEEecC----cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           79 EQEEKYEEYEVEIEQ----PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        79 ~~~~~~~~y~V~l~K----PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      .+-.+.....|+|.|    ++|+.+..+.     +.++||..|.++|.|+++|.|++||+|+.+...   .+- -....+
T Consensus        18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~---~v~-~~~~~~   93 (118)
T 3b76_A           18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV---ELT-EVSRSE   93 (118)
T ss_dssp             CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTE---EGG-GSCHHH
T ss_pred             cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHH
Confidence            344455666777754    5889988764     348999999999999999999999999998753   222 114446


Q ss_pred             HHHHhhcccCceEEEEeecC
Q 023871          150 TMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R~~  169 (276)
                      +...|+...+.|.|++.|..
T Consensus        94 ~~~~l~~~~~~v~L~v~R~~  113 (118)
T 3b76_A           94 AVALLKRTSSSIVLKALEVK  113 (118)
T ss_dssp             HHHHHHSCCSEEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            77788877788999998853

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.44  E-value=9e-07  Score=67.37  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=59.9

Q ss_pred             ceEEEEecC----cceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--c
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y  147 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~  147 (276)
                      ..|.|+|.|    .+|+.+....+           ++++|..|.|+|.|+++|.|++||+|+.+...      +..+  +
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~------~v~~~~~   77 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH   77 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence            347788875    47888865422           58999999999999999999999999998743      2333  5


Q ss_pred             hhHHHHhhcccCceEEEEeecC
Q 023871          148 GRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       148 g~~~~air~r~gpv~L~l~R~~  169 (276)
                      ..+...|+...+++.|.+.|.-
T Consensus        78 ~~~~~~l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           78 EQAVEAIRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHHHHHHHTCCSSEEEEEECCC
T ss_pred             HHHHHHHHhCCCcEEEEEEECC
Confidence            5677788876779999998854

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.43  E-value=1e-06  Score=67.72  Aligned_cols=84  Identities=23%  Similarity=0.440  Sum_probs=64.2

Q ss_pred             ccceEEEEecCc----ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           83 KYEEYEVEIEQP----YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        83 ~~~~y~V~l~KP----LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +....+|+|.|+    +|+.+..+.+  .+++|..|.+++.|+++| |++||+|+++...   .+-. ..+..+...|+.
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~   87 (104)
T 1wi2_A           13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDV---DFQD-IEHSKAVEILKT   87 (104)
T ss_dssp             SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECSS-CCHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhC
Confidence            345578888764    7899987644  489999999999999999 9999999998753   2211 125667777777


Q ss_pred             ccCceEEEEeecCCCc
Q 023871          157 RVGPLLMKMQKRYGKM  172 (276)
Q Consensus       157 r~gpv~L~l~R~~~~~  172 (276)
                       ..++.|.+.|...+.
T Consensus        88 -~~~v~l~v~r~~~~~  102 (104)
T 1wi2_A           88 -AREISMRVRFFSGPS  102 (104)
T ss_dssp             -SSSEEEEEECCCCSC
T ss_pred             -CCEEEEEEEECCCCC
Confidence             688999999976643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.42  E-value=6.4e-07  Score=84.09  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             cCCCcchhHHHHHH-----HHH-----hhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871          189 NSGVISNRVREIQM-----QNY-----MKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (276)
Q Consensus       189 ~~G~i~~al~Eiq~-----~nY-----kk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN  257 (276)
                      ..|++++|+..++.     +.+     ....++... ..-+++.|..++++|+|++|+..|++||+++|++.   .+|||
T Consensus       280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~  356 (457)
T 1kt0_A          280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYR  356 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHH
Confidence            78888888776665     111     111222222 34567999999999999999999999999999985   68999


Q ss_pred             HhHHHHhcCChhHHHhhh
Q 023871          258 VACCYSKLNQVPLLLALI  275 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aL  275 (276)
                      +|.||.++|++++|+..+
T Consensus       357 ~g~a~~~~g~~~~A~~~~  374 (457)
T 1kt0_A          357 RGEAQLLMNEFESAKGDF  374 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHH
Confidence            999999999999999876

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.41  E-value=9.1e-07  Score=68.03  Aligned_cols=85  Identities=21%  Similarity=0.427  Sum_probs=63.0

Q ss_pred             ccccceEEEEe--cC---cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           81 EEKYEEYEVEI--EQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        81 ~~~~~~y~V~l--~K---PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      +...+.++|+|  .+   +||+.+...       .+.+++|..|.+++.|+++|.|++||+|+++...   .+-.. .+.
T Consensus         8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~   83 (108)
T 2jre_A            8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV---NVQGM-AQS   83 (108)
T ss_dssp             SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTE---ECTTS-CHH
T ss_pred             ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHH
Confidence            34568899999  44   488999764       3459999999999999999999999999998753   22111 244


Q ss_pred             hHHHHhhcccCceEEEEeecC
Q 023871          149 RTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~  169 (276)
                      .+...++....++.|.+.|..
T Consensus        84 ~~~~~l~~~g~~v~l~v~R~~  104 (108)
T 2jre_A           84 DVVEVLRNAGNPVRLLLIRRL  104 (108)
T ss_dssp             HHHHHHHHHCSEEEEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEEeCC
Confidence            556666664567899998853

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.40  E-value=4.4e-07  Score=91.81  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+++-++... .+.+++.|+.+.++|+|++|+..|++||+++|++.   .+|+|++.||.++|++++|++++
T Consensus        64 ~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~---~a~~~Lg~~~~~~g~~~eAi~~~  134 (723)
T 4gyw_A           64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA---DAHSNLASIHKDSGNIPEAIASY  134 (723)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            345555555444 23445666666666777777777777776666664   46667777777777777666654

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.40  E-value=1.4e-06  Score=65.57  Aligned_cols=79  Identities=28%  Similarity=0.519  Sum_probs=61.1

Q ss_pred             ceEEEEec---CcceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHh
Q 023871           85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTI  154 (276)
Q Consensus        85 ~~y~V~l~---KPLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~ai  154 (276)
                      +.|+|+|.   .+||+.+..+.     +++++|..|.+++.|+++|.|++||+|+.+...      +..  .+..+...+
T Consensus         5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~l   78 (96)
T 1d5g_A            5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV------SLEGATHKQAVETL   78 (96)
T ss_dssp             CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTE------ECTTCCHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHH
Confidence            56788886   57899998653     359999999999999999999999999998742      222  344566677


Q ss_pred             hcccCceEEEEeecC
Q 023871          155 RQRVGPLLMKMQKRY  169 (276)
Q Consensus       155 r~r~gpv~L~l~R~~  169 (276)
                      +....++.|.+.|..
T Consensus        79 ~~~g~~v~l~v~R~~   93 (96)
T 1d5g_A           79 RNTGQVVHLLLEKGQ   93 (96)
T ss_dssp             HSCCSEEEEEEECCS
T ss_pred             HcCCCeEEEEEEcCC
Confidence            765567899998854

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.40  E-value=1e-06  Score=68.82  Aligned_cols=86  Identities=20%  Similarity=0.377  Sum_probs=61.0

Q ss_pred             ccccccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           79 EQEEKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        79 ~~~~~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      .+-.+.+.++|+|.|   ++|+.+..+.  +.+++|..|.+++.|+++|.|++||+|+.+...   .+=. ..+..++..
T Consensus        18 ~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~   93 (112)
T 2r4h_A           18 LYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGE---TTKN-MKHSRAIEL   93 (112)
T ss_dssp             -----CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTE---ECTT-CCHHHHHHH
T ss_pred             cccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHH
Confidence            344455678888876   5889887654  459999999999999999999999999998742   2211 123455666


Q ss_pred             hhcccCceEEEEeec
Q 023871          154 IRQRVGPLLMKMQKR  168 (276)
Q Consensus       154 ir~r~gpv~L~l~R~  168 (276)
                      ++....++.|.+.|.
T Consensus        94 l~~~g~~v~l~v~R~  108 (112)
T 2r4h_A           94 IKNGGRRVRLFLKRG  108 (112)
T ss_dssp             HHTTTTEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            665456789999884

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.39  E-value=1.3e-06  Score=65.13  Aligned_cols=78  Identities=15%  Similarity=0.376  Sum_probs=60.1

Q ss_pred             EEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCc
Q 023871           87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gp  160 (276)
                      ..|+|.|   ++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+...      +..++  ..+...|+....+
T Consensus         6 r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2he4_A            6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ------NVEGLRHAEVVASIKAREDE   78 (90)
T ss_dssp             EEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTSCHHHHHHHHTTSSSE
T ss_pred             EEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCc
Confidence            4566665   48888887654 489999999999999999 9999999998653      23333  5667777766678


Q ss_pred             eEEEEeecCCC
Q 023871          161 LLMKMQKRYGK  171 (276)
Q Consensus       161 v~L~l~R~~~~  171 (276)
                      +.|.+.|+-.+
T Consensus        79 v~l~v~r~~~~   89 (90)
T 2he4_A           79 ARLLVVGPSTR   89 (90)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEccCCC
Confidence            99999996543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.39  E-value=5.6e-07  Score=65.81  Aligned_cols=84  Identities=7%  Similarity=0.038  Sum_probs=67.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     ..++.. ...-++..|..++..|+|++|+..|++++.++|++.   .+++|+|.||.
T Consensus        24 ~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~   95 (133)
T 2lni_A           24 NECFQKGDYPQAMKHYTE-----AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---KGYTRKAAALE   95 (133)
T ss_dssp             HHHHHTTCSHHHHHHHHH-----HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---HHHHHHHHHHH
Confidence            444578999999776665     222221 134467889999999999999999999999999975   58999999999


Q ss_pred             hcCChhHHHhhhC
Q 023871          264 KLNQVPLLLALIE  276 (276)
Q Consensus       264 KLgq~~eAI~aLE  276 (276)
                      ++|++++|+..++
T Consensus        96 ~~~~~~~A~~~~~  108 (133)
T 2lni_A           96 AMKDYTKAMDVYQ  108 (133)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhhHHHHHHHHH
Confidence            9999999998763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.39  E-value=3.7e-07  Score=82.00  Aligned_cols=85  Identities=11%  Similarity=0.049  Sum_probs=67.4

Q ss_pred             cCCCcchhHHHHHH-----HHH-----hhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871          189 NSGVISNRVREIQM-----QNY-----MKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (276)
Q Consensus       189 ~~G~i~~al~Eiq~-----~nY-----kk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN  257 (276)
                      ..|++++|+..++.     +..     ....++... ..-+++.|..+++.|+|++|+..|++||+++|++.   .+|||
T Consensus       159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~  235 (336)
T 1p5q_A          159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---KGLSR  235 (336)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHH
Confidence            67888888776666     111     122223333 34568999999999999999999999999999985   68999


Q ss_pred             HhHHHHhcCChhHHHhhhC
Q 023871          258 VACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aLE  276 (276)
                      +|.||.++|++++|+..++
T Consensus       236 lg~~~~~~g~~~~A~~~~~  254 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQ  254 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHH
Confidence            9999999999999998763

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.39  E-value=1.1e-06  Score=66.79  Aligned_cols=81  Identities=14%  Similarity=-0.028  Sum_probs=63.0

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      -...|++++++..++.     +.++... .+-++..|..++..|+|++|+..|++++.++|++.   .+|+|+|.||.++
T Consensus        23 ~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~a~~~~~~   94 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQ-----AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYRRAASNMAL   94 (166)
T ss_dssp             HHHTTCHHHHHHHHHH-----HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred             HHHccCHHHHHHHHHH-----HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHh
Confidence            3477888888655544     3333322 34467888889999999999999999999999875   5899999999999


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++|+..+
T Consensus        95 ~~~~~A~~~~  104 (166)
T 1a17_A           95 GKFRAALRDY  104 (166)
T ss_dssp             TCHHHHHHHH
T ss_pred             ccHHHHHHHH
Confidence            9999998765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.39  E-value=3.3e-06  Score=68.32  Aligned_cols=82  Identities=13%  Similarity=0.050  Sum_probs=64.5

Q ss_pred             cCCCcchhHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHH
Q 023871          189 NSGVISNRVREIQMQNY--------------MKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nY--------------kk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A  254 (276)
                      ..|++++++..++..--              ...+.+  ...-+++.|..+++.|+|++|+..|++||.++|++.   .+
T Consensus        50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~  124 (198)
T 2fbn_A           50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI--EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---KA  124 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HH
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH---HH
Confidence            67888888776665110              000111  124467899999999999999999999999999885   68


Q ss_pred             HHHHhHHHHhcCChhHHHhhh
Q 023871          255 SYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++|.||..+|++++|+..+
T Consensus       125 ~~~lg~~~~~~~~~~~A~~~~  145 (198)
T 2fbn_A          125 LYKLGVANMYFGFLEEAKENL  145 (198)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHH
Confidence            999999999999999999876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.38  E-value=6.6e-07  Score=80.60  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             cCCCcchhHHHHHHH-----HH---h---hHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHH
Q 023871          189 NSGVISNRVREIQMQ-----NY---M---KKKEQKER--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS  255 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~-----nY---k---k~Kelkkq--ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~  255 (276)
                      ..|++++|+..++..     .+   .   +..+....  ..-+++.|..++++|+|++|+..|++||.++|++.   .+|
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~  267 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---KAL  267 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH---HHH
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Confidence            789999998877761     10   0   00111111  12467999999999999999999999999999985   689


Q ss_pred             HHHhHHHHhcCChhHHHhhhC
Q 023871          256 YNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       256 YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ||+|.||..+|++++|+..|+
T Consensus       268 ~~lg~a~~~~g~~~~A~~~l~  288 (338)
T 2if4_A          268 FRRGKAKAELGQMDSARDDFR  288 (338)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999998763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.37  E-value=6.3e-07  Score=66.45  Aligned_cols=58  Identities=14%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .-++..|..++..|+|++|+..|++||.++|++.   .+|+|++.||.++|++++|+..++
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~   77 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---VAWKWLGKTLQGQGDRAGARQAWE   77 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567899999999999999999999999999985   589999999999999999998763

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.37  E-value=1.3e-06  Score=69.43  Aligned_cols=84  Identities=14%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             cccceEEEEecCc---ceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           82 EKYEEYEVEIEQP---YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        82 ~~~~~y~V~l~KP---LGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      ...+.++|+|.|.   +|+.+..+.  +++++|..|.+++.|+++|.|++||+|+.+...   .+- .....+++..|+.
T Consensus        16 ~~~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~~   91 (123)
T 1ueq_A           16 LKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV---CVL-GHTHADVVKLFQS   91 (123)
T ss_dssp             CCSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTE---ECT-TSCHHHHHHHHHT
T ss_pred             CCCcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHh
Confidence            3446788998874   889888654  458999999999999999999999999998642   111 1134567777776


Q ss_pred             c--cCceEEEEeecC
Q 023871          157 R--VGPLLMKMQKRY  169 (276)
Q Consensus       157 r--~gpv~L~l~R~~  169 (276)
                      .  ..++.|++.|..
T Consensus        92 ~~~g~~v~l~v~R~~  106 (123)
T 1ueq_A           92 VPIGQSVNLVLCRGY  106 (123)
T ss_dssp             SCTTCEEEEEEEESC
T ss_pred             CCCCCeEEEEEEeCC
Confidence            3  467999999965

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.37  E-value=1.1e-06  Score=70.43  Aligned_cols=86  Identities=14%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-------------h
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------E  250 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------e  250 (276)
                      ..-...|++++++..++     ++.++... ...++..|..++..|+|++|+..|++|+++.|++.             .
T Consensus        45 ~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  119 (213)
T 1hh8_A           45 CMYTILKNMTEAEKAFT-----RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF  119 (213)
T ss_dssp             HHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred             HHHHHcCCHHHHHHHHH-----HHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCcc
Confidence            44457788888855544     44443332 34567899999999999999999999999888754             2


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...+|+|++.||.++|++++|+..+
T Consensus       120 ~~~~~~~l~~~~~~~g~~~~A~~~~  144 (213)
T 1hh8_A          120 ACEVLYNIAFMYAKKEEWKKAEEQL  144 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHccCHHHHHHHH
Confidence            3578999999999999999999876

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.37  E-value=3.1e-06  Score=66.19  Aligned_cols=84  Identities=24%  Similarity=0.370  Sum_probs=63.0

Q ss_pred             ceEEEEecC----cceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      ..++|+|.|    +||+.+..+.+           .++||..|.+++.|+++|.|++||+|+.+...   .+-.. .+-.
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~-~~~~   90 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGV---DLQNA-SHSE   90 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSC---BCTTC-CHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHH
Confidence            447788865    47888866542           49999999999999999999999999998742   33221 2446


Q ss_pred             HHHHhhcccCceEEEEeecCCCc
Q 023871          150 TMYTIRQRVGPLLMKMQKRYGKM  172 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R~~~~~  172 (276)
                      ++..|+....++.|.+.|.....
T Consensus        91 ~~~~~~~~g~~v~l~v~r~~~~~  113 (117)
T 2ehr_A           91 AVEAIKNAGNPVVFIVQSLSSTP  113 (117)
T ss_dssp             HHHHHHTSCSSEEEEECCBSCCC
T ss_pred             HHHHHHcCCCeEEEEEEECCCCC
Confidence            67777776678999999876543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.36  E-value=6.8e-07  Score=63.58  Aligned_cols=59  Identities=14%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+.++..|..++..|+|++|+..|++++..+|++.   .+++++|.||..+|++++|+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~   61 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---VLYSNRSAAYAKKGDYQKAYEDG   61 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHhhccHHHHHHHH
Confidence            345678999999999999999999999999999885   58999999999999999999875

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.36  E-value=2.4e-06  Score=66.07  Aligned_cols=82  Identities=23%  Similarity=0.394  Sum_probs=61.0

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      +..+|+|.|   ++|+.+..+.+.+++|..|.+++.|+++|.|++||+|+.+...   .+= ......+...|+.....+
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~g~~v   90 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGT---NVQ-GMTSEQVAQVLRNCGNSV   90 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSC---CCT-TSCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCeE
Confidence            446677764   6899998777789999999999999999999999999998742   221 112344556666545678


Q ss_pred             EEEEeecCC
Q 023871          162 LMKMQKRYG  170 (276)
Q Consensus       162 ~L~l~R~~~  170 (276)
                      .|.+.|...
T Consensus        91 ~l~v~R~~~   99 (111)
T 2dlu_A           91 RMLVARDPA   99 (111)
T ss_dssp             EEEEEESCT
T ss_pred             EEEEEeCCC
Confidence            999988544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.36  E-value=8.2e-07  Score=64.91  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++..|..++..|+|++|+..|++++..+|++.   .+++++|.||..+|++++|+..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~   73 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---KLYSNRAACYTKLLEFQLALKDC   73 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---HHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHhccHHHHHHHH
Confidence            4577899999999999999999999999999885   68999999999999999999876

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.36  E-value=1.5e-06  Score=66.84  Aligned_cols=81  Identities=26%  Similarity=0.445  Sum_probs=60.3

Q ss_pred             eEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           86 EYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        86 ~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      .++|+|.|   ++|+.+..+.       +.+++|..|.++|.|+++|.|++||+|+.+...   .+-. ..+-.++..++
T Consensus         4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~   79 (105)
T 2awx_A            4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV---SLEE-VTHEEAVTALK   79 (105)
T ss_dssp             EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CBHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHH
Confidence            46677754   7889998653       249999999999999999999999999998642   2211 13445666777


Q ss_pred             cccCceEEEEeecCC
Q 023871          156 QRVGPLLMKMQKRYG  170 (276)
Q Consensus       156 ~r~gpv~L~l~R~~~  170 (276)
                      ....++.|.+.|...
T Consensus        80 ~~~~~v~l~v~R~~~   94 (105)
T 2awx_A           80 NTSDFVYLKVAKPTS   94 (105)
T ss_dssp             SCCSEEEEEEECCCC
T ss_pred             cCCCeEEEEEEcCCC
Confidence            656788999998654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.35  E-value=1.6e-06  Score=66.18  Aligned_cols=82  Identities=21%  Similarity=0.318  Sum_probs=62.3

Q ss_pred             ceEEEEecCc---ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIEQP---YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~KP---LGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ....|+|.|.   +|+.+.... .++++|..|.+++.|+++| |++||+|+.+...   .+-.. .+..++..|+....+
T Consensus         6 ~~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~g~~   80 (102)
T 2d90_A            6 SGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK---SVEAL-DHDGVVEMIRKGGDQ   80 (102)
T ss_dssp             SSEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSC---BCTTS-CHHHHHHHHHHSTTE
T ss_pred             CCEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCE
Confidence            3467777775   889998754 3599999999999999999 9999999998753   22221 144566677765678


Q ss_pred             eEEEEeecCCC
Q 023871          161 LLMKMQKRYGK  171 (276)
Q Consensus       161 v~L~l~R~~~~  171 (276)
                      +.|.+.|+-+.
T Consensus        81 v~l~v~r~~~~   91 (102)
T 2d90_A           81 TTLLVLDKEAE   91 (102)
T ss_dssp             EEEEECSTTCC
T ss_pred             EEEEEEECCCc
Confidence            99999987665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.35  E-value=1.9e-06  Score=79.35  Aligned_cols=80  Identities=15%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             cCCCcchhHHHHHHHHHhhHHH----------------HHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          189 NSGVISNRVREIQMQNYMKKKE----------------QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Ke----------------lkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      ..|++++|+..++.     +.+                +... ..-+.+.|..++++|+|++|+..|++||+++|++.  
T Consensus       235 ~~g~~~~Ai~~y~k-----Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--  307 (370)
T 1ihg_A          235 KSQNWEMAIKKYTK-----VLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT--  307 (370)
T ss_dssp             HTTCHHHHHHHHHH-----HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--
T ss_pred             HhcCHHHHHHHHHH-----HHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH--
Confidence            67778887665554     333                2222 34467999999999999999999999999999985  


Q ss_pred             HHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          252 SVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       252 a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                       .+||++|.||.++|++++|+..|+
T Consensus       308 -~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          308 -KALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHccCHHHHHHHHH
Confidence             689999999999999999998763

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.35  E-value=1.1e-06  Score=65.49  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      ..++|+|.|    ++|+.+..+.+  .+++|..|.+++.|+++|.+++||+|+.+...   .+= ...+.++...++...
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~---~v~-~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE---DLS-SATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTE---ECT-TCCHHHHHHHHHTCC
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCC
Confidence            457888877    68999987633  48999999999999999559999999998743   221 113445667777656


Q ss_pred             CceEEEEeec
Q 023871          159 GPLLMKMQKR  168 (276)
Q Consensus       159 gpv~L~l~R~  168 (276)
                      .++.|.+.|.
T Consensus        80 ~~v~l~v~r~   89 (90)
T 1qav_A           80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            7789988873

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.35  E-value=1.3e-06  Score=64.69  Aligned_cols=75  Identities=24%  Similarity=0.466  Sum_probs=57.7

Q ss_pred             EEEEecC--cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871           87 YEVEIEQ--PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~K--PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp  160 (276)
                      ++|+++.  ++|+.+..+.+  .+++|..|.|++.|+++| +++||+|+.+...      +..+  +..+...|+....+
T Consensus         4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   76 (87)
T 2pa1_A            4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGE------SAEGMLHAEAQSKIRQSPSP   76 (87)
T ss_dssp             EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTE------ESTTCCHHHHHHHHHTCCSS
T ss_pred             EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCe
Confidence            4455544  78899887654  489999999999999999 9999999998653      2233  55667777765589


Q ss_pred             eEEEEeec
Q 023871          161 LLMKMQKR  168 (276)
Q Consensus       161 v~L~l~R~  168 (276)
                      +.|.+.|.
T Consensus        77 v~l~v~R~   84 (87)
T 2pa1_A           77 LRLQLDRI   84 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99999984

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.34  E-value=8.8e-07  Score=69.91  Aligned_cols=81  Identities=16%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             eEEEEecC----cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           86 EYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      .++|+|.|    +||+.+..+.+   +++||..|.+++.|+++|.|++||+|+.+...   .+ .-..+..+...|+...
T Consensus        16 ~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~---~v-~~~~~~~~~~~l~~~g   91 (117)
T 1v62_A           16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT---SM-EHCSLLEATKLLASIS   91 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTE---ET-TSCCHHHHHHHHHSCS
T ss_pred             cEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCC
Confidence            46777776    68899887643   46999999999999999999999999998743   23 0123456677777656


Q ss_pred             CceEEEEeecCC
Q 023871          159 GPLLMKMQKRYG  170 (276)
Q Consensus       159 gpv~L~l~R~~~  170 (276)
                      ..+.|++.|..-
T Consensus        92 ~~v~l~v~r~~~  103 (117)
T 1v62_A           92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CeEEEEEEECCC
Confidence            788999998654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.34  E-value=5.2e-07  Score=72.34  Aligned_cols=79  Identities=9%  Similarity=0.063  Sum_probs=66.3

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      -...|++++++..++...       .....-++..|..+++.|+|++|+..|++|+.++|++.   .+|+|++.||.++|
T Consensus        16 ~~~~~~~~~A~~~~~~a~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---VAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHcc
Confidence            346788888877776531       11344678999999999999999999999999999985   68999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|+..+
T Consensus        86 ~~~~A~~~~   94 (213)
T 1hh8_A           86 KYDLAIKDL   94 (213)
T ss_dssp             CHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            999999876

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.34  E-value=5e-07  Score=70.59  Aligned_cols=83  Identities=14%  Similarity=0.262  Sum_probs=63.6

Q ss_pred             cceEEEEecCc----ceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           84 YEEYEVEIEQP----YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        84 ~~~y~V~l~KP----LGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      ...+.|+|.|+    +|+.+..+.     +.+++|..|.++|.|+++|.|++||+|+.+...   .+.....+..+..+|
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~---~v~~~~~~~~~~~~l   95 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQ---ALDQTITHQQAISIL   95 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTE---ECCTTSCHHHHHHHH
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCCCCCHHHHHHHH
Confidence            35688898886    788887653     348999999999999999999999999998742   332112455667777


Q ss_pred             hcccCceEEEEeecC
Q 023871          155 RQRVGPLLMKMQKRY  169 (276)
Q Consensus       155 r~r~gpv~L~l~R~~  169 (276)
                      +.....+.|.+.|..
T Consensus        96 ~~~~~~v~l~v~R~~  110 (117)
T 2o2t_A           96 QKAKDTVQLVIARGS  110 (117)
T ss_dssp             HHCCSEEEEEEESSC
T ss_pred             HcCCCEEEEEEEeCC
Confidence            766678899999853

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.33  E-value=2.1e-06  Score=61.90  Aligned_cols=83  Identities=14%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     ..++... ..-++..|..++..|+|++|+..|++++.+.|++.   .++++++.||.
T Consensus        20 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~   91 (131)
T 2vyi_A           20 NEQMKVENFEAAVHFYGK-----AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS---KAYGRMGLALS   91 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHH-----HHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH---HHHHHHHHHHH
Confidence            334477888888665554     3333221 34467889999999999999999999999999885   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus        92 ~~~~~~~A~~~~  103 (131)
T 2vyi_A           92 SLNKHVEAVAYY  103 (131)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            999999999875

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.33  E-value=1.7e-06  Score=67.71  Aligned_cols=80  Identities=25%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             ceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ....|+|.|    ++|+.+... +++++|..|.+++.|+++|.+++||+|+.+...   .+- ...+.++...|+...++
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~~~~   99 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGI---EIR-GKDVNEVFDLLSDMHGT   99 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHHCCEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCe
Confidence            335577764    788888764 679999999999999999966999999998642   221 11345677777766678


Q ss_pred             eEEEEeecC
Q 023871          161 LLMKMQKRY  169 (276)
Q Consensus       161 v~L~l~R~~  169 (276)
                      +.|++.|..
T Consensus       100 v~l~v~r~~  108 (113)
T 1va8_A          100 LTFVLIPSS  108 (113)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEECC
Confidence            999998743

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.33  E-value=2.5e-06  Score=65.86  Aligned_cols=80  Identities=25%  Similarity=0.448  Sum_probs=61.0

Q ss_pred             ceEEEEecC---cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.++|+|.|   ++|+.+..+.     +.+++|..|.+++.|+++|.|++||+|+.+...   .+=. ..+-.++..++.
T Consensus         8 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~~   83 (110)
T 1um1_A            8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS---SLLG-LGYLRAVDLIRH   83 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSC---BCSS-CCHHHHHHHHHT
T ss_pred             cEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHc
Confidence            678899865   5889987753     348999999999999999999999999998642   2211 123455666776


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                      ...++.|.+.|.
T Consensus        84 ~~~~v~l~v~R~   95 (110)
T 1um1_A           84 GGKKMRFLVAKS   95 (110)
T ss_dssp             CCSEEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            567889999984

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.33  E-value=1.6e-06  Score=67.26  Aligned_cols=82  Identities=13%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             ceEEEEec---CcceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           85 EEYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        85 ~~y~V~l~---KPLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      +..+|+|.   +++|+.+..+.      +.++||..|.++|.|+++|.|++||+|+.+-..   .|- ...+..+...|+
T Consensus        15 ~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~   90 (108)
T 2d92_A           15 EVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY---CLD-NTSLAEAVEILK   90 (108)
T ss_dssp             SCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSC---BCT-TCCHHHHHHHHH
T ss_pred             ceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHH
Confidence            33566665   47899987653      358999999999999999999999999998743   331 123556777787


Q ss_pred             cc-cCceEEEEeecCC
Q 023871          156 QR-VGPLLMKMQKRYG  170 (276)
Q Consensus       156 ~r-~gpv~L~l~R~~~  170 (276)
                      .. .+++.|++.|+..
T Consensus        91 ~~~~~~v~l~v~R~~~  106 (108)
T 2d92_A           91 AVPPGLVHLGICSGPS  106 (108)
T ss_dssp             HSCSEEEEEEEECCCC
T ss_pred             hCCCCeEEEEEEcCCC
Confidence            64 5689999999753

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.33  E-value=1.1e-06  Score=69.90  Aligned_cols=85  Identities=16%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             ceEEEEecC----cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      +..+|+|.|    +||+.+..+.+     .++||..|.++|.|+++|.|++||+|+.+...   .+.....+..++..|+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT---PLDQNISHQQAIALLQ  101 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSC---BCSTTSCHHHHHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCCCCHHHHHHHHH
Confidence            456677765    47888865432     28999999999999999999999999998742   3331235556777787


Q ss_pred             cccCceEEEEeecCCCc
Q 023871          156 QRVGPLLMKMQKRYGKM  172 (276)
Q Consensus       156 ~r~gpv~L~l~R~~~~~  172 (276)
                      .....|.|.+.|.....
T Consensus       102 ~~~~~v~l~v~r~~~~~  118 (128)
T 2db5_A          102 QTTGSLRLIVAREPVHT  118 (128)
T ss_dssp             HCCSEEEEEEEECCCSS
T ss_pred             cCCCeEEEEEEcCCCCC
Confidence            76678899999976543

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.33  E-value=2.6e-06  Score=64.68  Aligned_cols=81  Identities=23%  Similarity=0.394  Sum_probs=60.1

Q ss_pred             ceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      ...+|+|.|   ++|+.+..+.       +.+++|..|.+++.|+++|.|++||+|+.+...   .+=. ..+..+...+
T Consensus         7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~   82 (101)
T 2jik_A            7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ---DLKN-LLHQDAVDLF   82 (101)
T ss_dssp             EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECSS-CCHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence            557788865   6889998763       359999999999999999999999999998642   2211 1234556666


Q ss_pred             hcccCceEEEEeecC
Q 023871          155 RQRVGPLLMKMQKRY  169 (276)
Q Consensus       155 r~r~gpv~L~l~R~~  169 (276)
                      +....++.|.+.|..
T Consensus        83 ~~~g~~v~l~v~R~~   97 (101)
T 2jik_A           83 RNAGYAVSLRVQHRL   97 (101)
T ss_dssp             HTCCSEEEEEEEEES
T ss_pred             HhCCCeEEEEEEeCC
Confidence            654567899998853

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.32  E-value=1.8e-06  Score=64.86  Aligned_cols=80  Identities=26%  Similarity=0.462  Sum_probs=58.6

Q ss_pred             cceEEEEecCc---ceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           84 YEEYEVEIEQP---YGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        84 ~~~y~V~l~KP---LGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      ++++.|++.|.   +|+.+..+        .+++++|..|.|++.|+++| |++||+|+.+...   .+-....+ ..+.
T Consensus         2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~~~-~~~~   76 (97)
T 2w4f_A            2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV---ALQGAEHH-EAVE   76 (97)
T ss_dssp             -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCCHH-HHHH
T ss_pred             ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCcCHH-HHHH
Confidence            46788888775   77888754        24699999999999999999 9999999998753   33323232 2334


Q ss_pred             HhhcccCceEEEEeec
Q 023871          153 TIRQRVGPLLMKMQKR  168 (276)
Q Consensus       153 air~r~gpv~L~l~R~  168 (276)
                      .++....++.|.+.|.
T Consensus        77 ~~~~~g~~v~l~v~R~   92 (97)
T 2w4f_A           77 ALRGAGTAVQMRVWRE   92 (97)
T ss_dssp             HHHTSCSEEEEEEECC
T ss_pred             HHhCCCCeEEEEEEeC
Confidence            4555567889999884

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=1.3e-06  Score=63.19  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++..|..++..|+|++|+..|++++..+|++.   .+++|+|.||..+|++++|+..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~   61 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---TYITNQAAVYFEKGDYNKCRELC   61 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHhccHHHHHHHH
Confidence            45677899999999999999999999999999885   68999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.32  E-value=5.3e-07  Score=75.06  Aligned_cols=80  Identities=9%  Similarity=-0.017  Sum_probs=51.5

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~  268 (276)
                      ..|++++++     ..|+++.++....+-++..|..+...|+|++|+..|+++|+++|++.   .+++|++.+|.++|++
T Consensus       130 ~~g~~~~A~-----~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          130 LLGERDKAE-----ASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL---DLRVRYASALLLKGKA  201 (217)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHTC----
T ss_pred             HcCChHHHH-----HHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCH
Confidence            455555553     44555555552234467889999999999999999999999999886   5899999999999999


Q ss_pred             hHHHhhhC
Q 023871          269 PLLLALIE  276 (276)
Q Consensus       269 ~eAI~aLE  276 (276)
                      ++|+..++
T Consensus       202 ~~A~~~~~  209 (217)
T 2pl2_A          202 EEAARAAA  209 (217)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            99988764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.32  E-value=1.2e-06  Score=68.18  Aligned_cols=84  Identities=20%  Similarity=0.369  Sum_probs=63.3

Q ss_pred             ceEEEEec---CcceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        85 ~~y~V~l~---KPLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      +.+.|+|.   .+||+.+..+.+   ++++|..|.+++.|+++|.|++||+|+++...   .+-. ..+..++..|+...
T Consensus        17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~   92 (116)
T 2dm8_A           17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV---DLRN-SSHEEAITALRQTP   92 (116)
T ss_dssp             SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTE---ECSS-SCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCC
Confidence            45778885   468899987655   69999999999999999999999999998642   2211 11445667777555


Q ss_pred             CceEEEEeecCCCc
Q 023871          159 GPLLMKMQKRYGKM  172 (276)
Q Consensus       159 gpv~L~l~R~~~~~  172 (276)
                      .++.|.+.|.....
T Consensus        93 ~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           93 QKVRLVVYRDEAHY  106 (116)
T ss_dssp             SEEEEEEECCSSCC
T ss_pred             CeEEEEEEeCCccc
Confidence            78999999865543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.31  E-value=1.1e-06  Score=73.64  Aligned_cols=60  Identities=23%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..|+.+++.|+|++|+..|+++|...|+++....++|++|.||.++|++++|+..+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~   75 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEY   75 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            456788888888888888888888888888887555678888888888888888888765

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=2.6e-06  Score=67.00  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=63.9

Q ss_pred             ccccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           81 EEKYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        81 ~~~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      ......++|+|.|   +||+.+..+.       +.+++|..|.+++.|+++|.|++||+|+.+-..   .|-... +-.+
T Consensus        13 ~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~~-~~~~   88 (120)
T 2eno_A           13 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ---DLKNLL-HQDA   88 (120)
T ss_dssp             CEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTE---ECCSCC-HHHH
T ss_pred             CCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCCCC-HHHH
Confidence            3445677888876   5889998753       459999999999999999999999999998742   222211 3356


Q ss_pred             HHHhhcccCceEEEEeecCC
Q 023871          151 MYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~~~  170 (276)
                      +..++.....+.|.+.|...
T Consensus        89 ~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           89 VDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            66676555678999988654

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.30  E-value=2.2e-06  Score=67.79  Aligned_cols=82  Identities=23%  Similarity=0.400  Sum_probs=61.7

Q ss_pred             ccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      +.+..+|+|.|   .+|+.+..+.       +.+++|..|.++|.|+++|.|++||+|+.+...   .+- ......+..
T Consensus        22 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~   97 (117)
T 2byg_A           22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY---SLE-EVTHEEAVA   97 (117)
T ss_dssp             EEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHH
T ss_pred             CCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHH
Confidence            33556677764   7889998653       358999999999999999999999999998752   221 113456777


Q ss_pred             HhhcccCceEEEEeec
Q 023871          153 TIRQRVGPLLMKMQKR  168 (276)
Q Consensus       153 air~r~gpv~L~l~R~  168 (276)
                      .|+....+|.|++.|.
T Consensus        98 ~l~~~g~~v~l~v~R~  113 (117)
T 2byg_A           98 ILKNTSEVVYLKVGKP  113 (117)
T ss_dssp             HHHTCCSEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEEeC
Confidence            7876567889999884

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.29  E-value=2.8e-06  Score=65.63  Aligned_cols=80  Identities=19%  Similarity=0.328  Sum_probs=60.7

Q ss_pred             ceEEEEecC----cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r  157 (276)
                      +.++|+|.|    .+|+.+....+ ++++|..|.+++.|+++|.|++||+|+++...      +...  +..+...++..
T Consensus         1 n~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~~~   74 (112)
T 1qau_A            1 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             CEEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTE------ECTTSCHHHHHHHHHHS
T ss_pred             CEEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHhC
Confidence            357888844    58999987653 49999999999999999966999999998743      2223  55566677654


Q ss_pred             -cCceEEEEeecCC
Q 023871          158 -VGPLLMKMQKRYG  170 (276)
Q Consensus       158 -~gpv~L~l~R~~~  170 (276)
                       ..++.|.+.|.-.
T Consensus        75 ~g~~v~l~v~R~g~   88 (112)
T 1qau_A           75 ASETHVVLILRGPE   88 (112)
T ss_dssp             CSSSEEEEEEECCT
T ss_pred             CCCcEEEEEEeCCc
Confidence             4688999998643

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.29  E-value=2.9e-06  Score=65.51  Aligned_cols=82  Identities=15%  Similarity=0.332  Sum_probs=62.2

Q ss_pred             ccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHH
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMY  152 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~  152 (276)
                      ..+.+.+++.|   ++|+.+....+     ++++|..|.+++.|+++|.|++||+|+.+...   .+  |.   +..+..
T Consensus         9 ~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~---~v~~~~---~~~~~~   82 (111)
T 2koj_A            9 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV---DLAGKS---QEEVVS   82 (111)
T ss_dssp             SCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTE---ECTTSC---HHHHHH
T ss_pred             cCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCCCC---HHHHHH
Confidence            34678888865   68999987643     58999999999999999989999999998753   33  32   345566


Q ss_pred             Hhhcc--cCceEEEEeecCC
Q 023871          153 TIRQR--VGPLLMKMQKRYG  170 (276)
Q Consensus       153 air~r--~gpv~L~l~R~~~  170 (276)
                      .|+..  ..++.|.+.|.-.
T Consensus        83 ~l~~~~~g~~v~l~v~R~~~  102 (111)
T 2koj_A           83 LLRSTKMEGTVSLLVFRQEE  102 (111)
T ss_dssp             HHHHCCCSSEEEEEEEECCC
T ss_pred             HHHhCCCCCeEEEEEEeCCC
Confidence            66653  4678999988543

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.29  E-value=3e-06  Score=63.31  Aligned_cols=80  Identities=26%  Similarity=0.456  Sum_probs=58.7

Q ss_pred             ceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      +.++|+|.|   ++|+.+..+.       +.+++|..|.|++.|+++|.|++||+|+++...   .+-. ..+..+...+
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~~   78 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT---NLQD-VRHEEAVASL   78 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CBHHHHHHHH
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence            346777754   6899997542       348999999999999999999999999998642   2211 1234556667


Q ss_pred             hcccCceEEEEeec
Q 023871          155 RQRVGPLLMKMQKR  168 (276)
Q Consensus       155 r~r~gpv~L~l~R~  168 (276)
                      +...+++.|.+.|.
T Consensus        79 ~~~~~~v~l~v~R~   92 (94)
T 2fe5_A           79 KNTSDMVYLKVAKP   92 (94)
T ss_dssp             HTCCSEEEEEEECC
T ss_pred             HcCCCeEEEEEEcC
Confidence            75566889999874

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.29  E-value=1.5e-06  Score=68.86  Aligned_cols=80  Identities=15%  Similarity=0.320  Sum_probs=61.7

Q ss_pred             ceEEEEecC---cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +..+|+|.|   ++|+.+..+.     +.+++|..|.|+|.|+++|.|++||+|+.+...   .+-. ..+..+...|+.
T Consensus        25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l~~  100 (117)
T 2fne_A           25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ---SLEG-VTHEEAVAILKR  100 (117)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHc
Confidence            456788875   6889987653     348999999999999999999999999998742   2211 145567777886


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                      ..+++.|.+.|.
T Consensus       101 ~~~~v~l~v~R~  112 (117)
T 2fne_A          101 TKGTVTLMVLSS  112 (117)
T ss_dssp             CCSSEEEEEEEC
T ss_pred             CCCeEEEEEEeC
Confidence            677899999885

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.29  E-value=7.2e-07  Score=63.09  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..++..|+|++|+..|++++.++|++.   .+++|+|.||..+|++++|+..+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~   63 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---KYWLMKGKALYNLERYEEAVDCY   63 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHccCHHHHHHHH
Confidence            45778899999999999999999999999985   58999999999999999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.28  E-value=1.1e-06  Score=73.19  Aligned_cols=59  Identities=20%  Similarity=0.228  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+++.|..+++.|+|++|+..|++++...|+++....++++++.||.++|++++|++.+
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~   64 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAI   64 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45566666666666666666666666666665544456666666666666666666654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.28  E-value=1.9e-06  Score=64.99  Aligned_cols=78  Identities=19%  Similarity=0.385  Sum_probs=58.6

Q ss_pred             EEEEecC----cceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           87 YEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      .+|+|.|    ++|+.+..+.+        .+++|..|.+++.|+++|.|++||+|+++...   .+-.. ....+...+
T Consensus         7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~~-~~~~~~~~l   82 (98)
T 1ihj_A            7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK---DVRNS-TEQAVIDLI   82 (98)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTE---ECTTC-CHHHHHHHH
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHH
Confidence            5688888    89999976532        28999999999999999999999999998753   22211 123456666


Q ss_pred             hcccCceEEEEeec
Q 023871          155 RQRVGPLLMKMQKR  168 (276)
Q Consensus       155 r~r~gpv~L~l~R~  168 (276)
                      +....++.|.+.|.
T Consensus        83 ~~~g~~v~l~v~R~   96 (98)
T 1ihj_A           83 KEADFKIELEIQTF   96 (98)
T ss_dssp             HHSCSEEEEEEEEC
T ss_pred             hcCCCeEEEEEEeC
Confidence            66566889999884

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=1e-06  Score=63.80  Aligned_cols=86  Identities=12%  Similarity=0.110  Sum_probs=65.9

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHHHHHHh
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVASYNVA  259 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A~YN~A  259 (276)
                      ..-...|++++++..++.     +.++... ..-++..|..++..|+|++|+..|++++.+.|++.    ....+++|+|
T Consensus        12 ~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A           12 NDAYKKKDFDTALKHYDK-----AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHH-----HHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            344577888888666554     3332221 33456889999999999999999999998877542    1257899999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||.++|++++|++.+
T Consensus        87 ~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHH
Confidence            9999999999999876

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=2.6e-06  Score=64.90  Aligned_cols=78  Identities=21%  Similarity=0.425  Sum_probs=59.5

Q ss_pred             EEEEecCc----ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           87 YEVEIEQP----YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~KP----LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      .+|+|.|.    ||+.+....+  .+++|..|.+++.|+++| |++||+|+.+...   .+-... +-.++..++. ..+
T Consensus        12 ~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~-~~~~~~~~~~-~~~   85 (100)
T 2eeh_A           12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGL---SLESTT-MGSAVKVLTS-SSR   85 (100)
T ss_dssp             CCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTE---ECSSCC-HHHHHHHHHS-CSS
T ss_pred             EEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHhhcC-CCE
Confidence            44566533    9999987643  489999999999999999 9999999998753   333332 5667777777 688


Q ss_pred             eEEEEeecCC
Q 023871          161 LLMKMQKRYG  170 (276)
Q Consensus       161 v~L~l~R~~~  170 (276)
                      +.|.+.|.--
T Consensus        86 v~l~v~R~g~   95 (100)
T 2eeh_A           86 LHMMVRRMGS   95 (100)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEECCc
Confidence            9999998543

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=9.7e-07  Score=66.76  Aligned_cols=77  Identities=21%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ..|+|.|    +||+.+.. .+++++|..|.|++.|+++|.+++||+|+.+..   ..+  ...+..+...|+...+++.
T Consensus         8 r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing---~~v--~~~~~~~~~~l~~~~~~v~   81 (91)
T 2e7k_A            8 RMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVNG---QPV--GSDPRALQELLRNASGSVI   81 (91)
T ss_dssp             CBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEETT---EEC--TTCHHHHHHHHHTCCSSBC
T ss_pred             EEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC--CCCHHHHHHHHHcCCCeEE
Confidence            3466654    79999987 467999999999999999988999999999864   344  1345566777776677899


Q ss_pred             EEEeecC
Q 023871          163 MKMQKRY  169 (276)
Q Consensus       163 L~l~R~~  169 (276)
                      |.+.|.+
T Consensus        82 l~v~~~~   88 (91)
T 2e7k_A           82 LKILSGP   88 (91)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9988753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.28  E-value=2.3e-06  Score=65.06  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...+.++..|..++..|+|++|+..|++++.++|++.   .+|+|++.||..+|++++|+..+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456678999999999999999999999999999985   68999999999999999999875

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.27  E-value=2.4e-06  Score=68.49  Aligned_cols=82  Identities=22%  Similarity=0.407  Sum_probs=61.0

Q ss_pred             ceEEEEec-C---cceeEEeeeCC------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           85 EEYEVEIE-Q---PYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        85 ~~y~V~l~-K---PLGl~f~e~~d------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      ..++|+|. +   +||+.+..+.+      .++||..|.++|.|+++|.|++||+|++|-..   .+-. ..+..++..|
T Consensus        25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l  100 (127)
T 1wg6_A           25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE---TLLG-KSNHEAMETL  100 (127)
T ss_dssp             EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTE---ESTT-SCHHHHHHHH
T ss_pred             eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence            45677776 3   59999987642      48999999999999999999999999998742   2211 1233666777


Q ss_pred             hcc-------cCceEEEEeecCC
Q 023871          155 RQR-------VGPLLMKMQKRYG  170 (276)
Q Consensus       155 r~r-------~gpv~L~l~R~~~  170 (276)
                      +..       .++|.|++.|..-
T Consensus       101 ~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          101 RRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSC
T ss_pred             HHhhccccCCCCEEEEEEEeCCC
Confidence            743       5789999998654

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.1e-06  Score=65.56  Aligned_cols=82  Identities=22%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             ccceEEEEecC---cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      ..+.++|+|.|   ++|+.+..+.    +++++|..|.+++.|+++|.|++||+|+.+...   .+-.. .+..++..++
T Consensus         9 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~~~~   84 (104)
T 2djt_A            9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE---STQGL-THAQAVERIR   84 (104)
T ss_dssp             CCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTE---ECTTC-CHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHH
Confidence            34668888864   6788887642    468999999999999999999999999998753   22111 2445666666


Q ss_pred             cccCceEEEEeec
Q 023871          156 QRVGPLLMKMQKR  168 (276)
Q Consensus       156 ~r~gpv~L~l~R~  168 (276)
                      ....++.|.+.|.
T Consensus        85 ~~g~~v~l~v~R~   97 (104)
T 2djt_A           85 AGGPQLHLVIRRP   97 (104)
T ss_dssp             HTCSEEEEEECCC
T ss_pred             cCCCeEEEEEEEC
Confidence            5456789999884

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.27  E-value=2.6e-06  Score=67.53  Aligned_cols=84  Identities=19%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             ccceEEEEecC---cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.+.++|+|.|   +||+.+..+.+   .+++|..|.|+|.|+++|.|++||+|+.+...   .+-.. ..-.++..++.
T Consensus        23 ~~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~---~v~~~-~~~~~~~~~~~   98 (124)
T 2daz_A           23 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQ---ILYGR-SHQNASAIIKT   98 (124)
T ss_dssp             SSEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSC---BCTTS-CHHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHc
Confidence            34567888886   78899977643   59999999999999999999999999998642   33111 22345566766


Q ss_pred             ccCceEEEEeecCC
Q 023871          157 RVGPLLMKMQKRYG  170 (276)
Q Consensus       157 r~gpv~L~l~R~~~  170 (276)
                      ..+++.|++.|...
T Consensus        99 ~~~~v~l~v~R~~~  112 (124)
T 2daz_A           99 APSKVKLVFIRNED  112 (124)
T ss_dssp             SCSEEEEEEEECTT
T ss_pred             CCCeEEEEEEeCCC
Confidence            56789999998543

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.27  E-value=1.9e-06  Score=66.11  Aligned_cols=83  Identities=18%  Similarity=0.392  Sum_probs=62.6

Q ss_pred             ccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .++.++|+|.|   ++|+.+..+.  +.+++|..|.+++.|+++|.|++||+|+++-..   .+- -..+..++..|+..
T Consensus         7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~-~~~~~~~~~~l~~~   82 (103)
T 1uep_A            7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI---PVA-GKTHRYVIDLMHHA   82 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTE---ECT-TSCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhC
Confidence            45677788876   5788887653  458999999999999999999999999998643   221 11345566677754


Q ss_pred             --cCceEEEEeecC
Q 023871          158 --VGPLLMKMQKRY  169 (276)
Q Consensus       158 --~gpv~L~l~R~~  169 (276)
                        ..+|.|++.|..
T Consensus        83 ~~g~~v~l~v~R~~   96 (103)
T 1uep_A           83 ARNGQVNLTVRRKV   96 (103)
T ss_dssp             HHHTEEEEEEEEEC
T ss_pred             CCCCcEEEEEEeCC
Confidence              578999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.27  E-value=1e-06  Score=82.71  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             HhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhHH
Q 023871          205 YMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPLL  271 (276)
Q Consensus       205 Ykk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~eA  271 (276)
                      |.+..+++. ....+++.|+.+++.|+|++|+..|++||.++|++.            ....+|+|+|.||.+++++++|
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  336 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA  336 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            444444443 345678999999999999999999999999999872            1257899999999999999999


Q ss_pred             Hhhh
Q 023871          272 LALI  275 (276)
Q Consensus       272 I~aL  275 (276)
                      +..+
T Consensus       337 ~~~~  340 (457)
T 1kt0_A          337 VECC  340 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.26  E-value=1.6e-06  Score=63.62  Aligned_cols=78  Identities=24%  Similarity=0.380  Sum_probs=55.7

Q ss_pred             eEEEEecC--cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l~K--PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      .+.|+|.+  ++|+.+..+.  +.+++|..|.|++.|+++| |++||+|+.+...   .+-.. .+..+...++...+++
T Consensus         2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v   76 (85)
T 1rgw_A            2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGV---NTDTM-THLEAQNKIKSASYNL   76 (85)
T ss_dssp             EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTE---ECTTC-CHHHHHHHHTTCSSCE
T ss_pred             cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCc-CHHHHHHHHHcCCCeE
Confidence            46677765  4677776443  3379999999999999998 9999999998742   22211 2245566666556779


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|.+.|.
T Consensus        77 ~l~v~R~   83 (85)
T 1rgw_A           77 SLTLQKS   83 (85)
T ss_dssp             EEEEESC
T ss_pred             EEEEEeC
Confidence            9999874

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.26  E-value=3.4e-06  Score=64.74  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=60.2

Q ss_pred             cccceEEEEec--CcceeEEeee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           82 EKYEEYEVEIE--QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        82 ~~~~~y~V~l~--KPLGl~f~e~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      .+.+.++|+|.  .++|+.+..+     .+.+++|..|.++|.|+++|.|++||+|+.+...   .+-. ...-.+...+
T Consensus         8 ~~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~-~~~~~~~~~~   83 (106)
T 3axa_A            8 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR---SLVG-LSQERAAELM   83 (106)
T ss_dssp             --CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTE---ECTT-CCHHHHHHHH
T ss_pred             CCceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence            34566778773  3567777643     3448999999999999999999999999998743   2211 1234556667


Q ss_pred             hcccCceEEEEeecCC
Q 023871          155 RQRVGPLLMKMQKRYG  170 (276)
Q Consensus       155 r~r~gpv~L~l~R~~~  170 (276)
                      +....++.|.+.|.-.
T Consensus        84 ~~~g~~v~l~v~R~~~   99 (106)
T 3axa_A           84 TRTSSVVTLEVAKQGA   99 (106)
T ss_dssp             HTCCSEEEEEEECCCS
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            6656688999998543

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.26  E-value=1.7e-06  Score=67.20  Aligned_cols=83  Identities=19%  Similarity=0.376  Sum_probs=62.3

Q ss_pred             cceEEEEecC---cceeEEee---e-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           84 YEEYEVEIEQ---PYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        84 ~~~y~V~l~K---PLGl~f~e---~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      .+.++|+|.|   ++|+.+..   +     .+.++||..|.|+|.|+++|.|++||+|+.+...   .+-.. ..-.+..
T Consensus         3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~   78 (113)
T 2g5m_B            3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT---SLVGV-TQSFAAS   78 (113)
T ss_dssp             CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTE---ECSSC-CHHHHHH
T ss_pred             eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHH
Confidence            4667888864   58898877   2     3459999999999999999999999999998743   23211 2345566


Q ss_pred             HhhcccCceEEEEeecCC
Q 023871          153 TIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       153 air~r~gpv~L~l~R~~~  170 (276)
                      .++....++.|.+.|..-
T Consensus        79 ~~~~~g~~v~l~v~R~~~   96 (113)
T 2g5m_B           79 VLRNTKGRVRFMIGRERP   96 (113)
T ss_dssp             HHHHSCSSCEEEEEECCC
T ss_pred             HHhcCCCeEEEEEEeCCC
Confidence            677667789999998654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.26  E-value=2.4e-06  Score=66.87  Aligned_cols=86  Identities=22%  Similarity=0.397  Sum_probs=63.2

Q ss_pred             ccccceEEEEecCc---ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           81 EEKYEEYEVEIEQP---YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        81 ~~~~~~y~V~l~KP---LGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.+.+..+|+|.|+   +|+.+....+ ++++|..|.+++.|+++|.|++||+|+++...   .+-.... -..+..++.
T Consensus        10 ~~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~~~~-~~~~~~~~~   85 (119)
T 1tp5_A           10 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRNASH-EQAAIALKN   85 (119)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTE---ECTTCCH-HHHHHHHHT
T ss_pred             CCCCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCCCH-HHHHHHHHc
Confidence            44557788999876   8999987654 59999999999999999999999999998742   2221111 233445555


Q ss_pred             ccCceEEEEeecCC
Q 023871          157 RVGPLLMKMQKRYG  170 (276)
Q Consensus       157 r~gpv~L~l~R~~~  170 (276)
                      ...++.|.+.|+..
T Consensus        86 ~~~~v~l~v~r~~~   99 (119)
T 1tp5_A           86 AGQTVTIIAQYKPE   99 (119)
T ss_dssp             SCSEEEEEEEECHH
T ss_pred             CCCeEEEEEEECCc
Confidence            46678999998643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.26  E-value=3.1e-06  Score=73.47  Aligned_cols=80  Identities=10%  Similarity=-0.005  Sum_probs=63.5

Q ss_pred             CCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH----HHHHHHHh
Q 023871          191 GVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVA  259 (276)
Q Consensus       191 G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~----a~A~YN~A  259 (276)
                      |++++++..     |+++.++...       ..-+.+-|..+.+.|+|++|+..|++|+.+.|++...    ..+++|++
T Consensus       132 g~~~~A~~~-----~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          132 HDYAKAIDC-----YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             CCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             cCHHHHHHH-----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            888888554     4455554432       2335678999999999999999999999999987542    34799999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|+.++
T Consensus       207 ~~~~~~g~~~~A~~~~  222 (292)
T 1qqe_A          207 LCQLAATDAVAAARTL  222 (292)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            9999999999999876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.26  E-value=1.5e-06  Score=70.97  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKP-TPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P-~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..|..+++.|+|++|+..|+++|+++| .+.   .++||++.||.++|++++|+..+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~   65 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYF   65 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHH
Confidence            4578999999999999999999999999998 654   68999999999999999999876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.25  E-value=2.6e-06  Score=63.08  Aligned_cols=91  Identities=13%  Similarity=0.091  Sum_probs=60.3

Q ss_pred             HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHHHh
Q 023871          185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVA  259 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN~A  259 (276)
                      ..-...|++++++..+++  ..+.+.........-....|..++..|+|++|+..|++|+.+.++   ......+++|++
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~   96 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG   96 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            334467888888666655  222222222222334567788888888888888888888866433   233366788888


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|+..+
T Consensus        97 ~~~~~~~~~~~A~~~~  112 (164)
T 3ro3_A           97 NTYTLLQDYEKAIDYH  112 (164)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHH
Confidence            8888888888887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.25  E-value=4.3e-06  Score=67.39  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++..|..++..|+|++|+..|++++.++|++.   .+|++++.||.++|++++|+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---RGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCCHHHHHHHH
Confidence            3356788888889999999999999998888874   57888888888888888888765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.25  E-value=4.1e-06  Score=59.86  Aligned_cols=84  Identities=21%  Similarity=0.226  Sum_probs=65.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     ..++... ...++..|..++..|+|++|+..|++++.+.|++.   .++++++.||
T Consensus        16 ~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~   87 (125)
T 1na0_A           16 GNAYYKQGDYDEAIEYYQK-----ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH-----HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence            3445578888888665554     2222221 23467889999999999999999999999999875   5899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|+..+
T Consensus        88 ~~~~~~~~A~~~~  100 (125)
T 1na0_A           88 YKQGDYDEAIEYY  100 (125)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHhcCHHHHHHHH
Confidence            9999999999875

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.24  E-value=6.3e-06  Score=61.90  Aligned_cols=79  Identities=22%  Similarity=0.415  Sum_probs=57.2

Q ss_pred             ceEEEEecC--cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           85 EEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        85 ~~y~V~l~K--PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      .+++|++.|  +||+.+..+.          +.+++|..|.|++.|++ | |++||+|+.+...   .+=.. ..-+...
T Consensus         3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~---~v~~~-~~~~~~~   76 (95)
T 1mfg_A            3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFINI-EHGQAVS   76 (95)
T ss_dssp             EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTE---ECTTC-BHHHHHH
T ss_pred             eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCE---EcCCC-CHHHHHH
Confidence            457777776  5888887643          34899999999999999 7 9999999998742   22111 1234555


Q ss_pred             HhhcccCceEEEEeecC
Q 023871          153 TIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       153 air~r~gpv~L~l~R~~  169 (276)
                      .++....++.|.+.|..
T Consensus        77 ~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           77 LLKTFQNTVELIIVREV   93 (95)
T ss_dssp             HHHHCCSEEEEEEEEEC
T ss_pred             HhhcCCCeEEEEEEeCC
Confidence            66655678899999864

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.24  E-value=2.7e-06  Score=63.20  Aligned_cols=80  Identities=19%  Similarity=0.378  Sum_probs=57.0

Q ss_pred             ceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-  158 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~-  158 (276)
                      ++.+|+|.|   .+|+.+..+.  +.+++|..|.|+|.|+++|.+++||+|+.+...   .+ .-....++...|+... 
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~   77 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGT---PV-IGKSHQLVVQLMQQAAK   77 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCC
Confidence            345666654   4788887652  237999999999999999999999999998743   22 1123345566666543 


Q ss_pred             -CceEEEEeec
Q 023871          159 -GPLLMKMQKR  168 (276)
Q Consensus       159 -gpv~L~l~R~  168 (276)
                       +++.|.+.|.
T Consensus        78 ~~~v~l~v~R~   88 (90)
T 2q9v_A           78 QGHVNLTVRQT   88 (90)
T ss_dssp             HTEEEEEEEEC
T ss_pred             CCeEEEEEEec
Confidence             3799999884

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.24  E-value=6.5e-07  Score=80.82  Aligned_cols=80  Identities=14%  Similarity=-0.012  Sum_probs=64.7

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ...|++++++..+     +++.++... ..-++..|..+++.|+|++|+..|+++|+++|++.   .++++++.||.++|
T Consensus        36 ~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g  107 (537)
T 3fp2_A           36 FTAKNFNEAIKYY-----QYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS---KALLRRASANESLG  107 (537)
T ss_dssp             HHTTCCC-CHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHH-----HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcC
Confidence            3788899885554     445454433 45567999999999999999999999999999985   58999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|+..+
T Consensus       108 ~~~~A~~~~  116 (537)
T 3fp2_A          108 NFTDAMFDL  116 (537)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999865

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.23  E-value=2.6e-06  Score=63.03  Aligned_cols=78  Identities=24%  Similarity=0.462  Sum_probs=56.3

Q ss_pred             eEEEEe--cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l--~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      .+.|+|  +.|+|+.+..+.+  .+++|..|.|++.|+++| |++||+|+++...   .+-... +..+...++....++
T Consensus         4 ~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~-~~~~~~~~~~~g~~v   78 (88)
T 2uzc_A            4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGI---NAQGMT-HLEAQNKIKGCTGSL   78 (88)
T ss_dssp             EEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTTCC-HHHHHHHHHTCCSEE
T ss_pred             EEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHhCCCeE
Confidence            345555  4567888876543  389999999999999999 9999999998642   222221 255666777556788


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|.+.|.
T Consensus        79 ~l~v~R~   85 (88)
T 2uzc_A           79 NMTLQRE   85 (88)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999884

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.23  E-value=2.7e-06  Score=72.30  Aligned_cols=81  Identities=19%  Similarity=0.377  Sum_probs=62.8

Q ss_pred             ccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      ..+.++|+|.|   +||+.+...        .++++||..|.+||.|+++|.|++||+|+.|...   .|- -...-.+.
T Consensus        78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~---~v~-~~~~~~~~  153 (170)
T 3egg_C           78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT---SLV-GVTQSFAA  153 (170)
T ss_dssp             TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TBCHHHHH
T ss_pred             CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHH
Confidence            45678899875   899998872        2358999999999999999999999999998753   220 11234567


Q ss_pred             HHhhcccCceEEEEee
Q 023871          152 YTIRQRVGPLLMKMQK  167 (276)
Q Consensus       152 ~air~r~gpv~L~l~R  167 (276)
                      ..|+...+.|.|++.|
T Consensus       154 ~~l~~~g~~v~L~V~R  169 (170)
T 3egg_C          154 SVLRNTKGRVRFMIGR  169 (170)
T ss_dssp             HHHHHCCSEEEEEEEE
T ss_pred             HHHHcCCCEEEEEEEe
Confidence            7778767789999988

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.23  E-value=8.2e-06  Score=62.97  Aligned_cols=82  Identities=26%  Similarity=0.429  Sum_probs=61.0

Q ss_pred             cccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      .+.+.+.|++.|   .+|+.+..+        .+.+++|..|.+++.|+++| |++||+|+.+...   .+-....+ ..
T Consensus        12 ~~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~~-~~   86 (110)
T 1x5q_A           12 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV---ALQGAEHH-EA   86 (110)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCCHH-HH
T ss_pred             CCcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCcCHH-HH
Confidence            455788999987   688988754        34699999999999999999 9999999998753   23222222 33


Q ss_pred             HHHhhcccCceEEEEeec
Q 023871          151 MYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~  168 (276)
                      +..++....++.|++.|.
T Consensus        87 ~~~~~~~g~~v~l~v~R~  104 (110)
T 1x5q_A           87 VEALRGAGTAVQMRVWRE  104 (110)
T ss_dssp             HHHHHSCCSEEEEEEEEC
T ss_pred             HHHhhCCCCeEEEEEEEC
Confidence            445555567889999985

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.22  E-value=3.6e-06  Score=60.59  Aligned_cols=59  Identities=22%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ....++..|..++..|+|++|+..|++++.++|++.   .++++++.||..+|++++|+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---VYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhhchHHHHHHH
Confidence            345567999999999999999999999999999885   68999999999999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.22  E-value=1.9e-06  Score=72.23  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      ..-...|++++++..++..--.... -....+.++..|..+++.|+|++|+..|+++|.+.|+++....++|+++.||.+
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            3344789999998777762110000 000134467899999999999999999999999999887777899999999999


Q ss_pred             --------cCChhHHHhhh
Q 023871          265 --------LNQVPLLLALI  275 (276)
Q Consensus       265 --------Lgq~~eAI~aL  275 (276)
                              +|++++|+..+
T Consensus       102 ~~~~~~~~~~~~~~A~~~~  120 (261)
T 3qky_A          102 LSPPYELDQTDTRKAIEAF  120 (261)
T ss_dssp             HCCCTTSCCHHHHHHHHHH
T ss_pred             hcccccccchhHHHHHHHH
Confidence                    99999999876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.22  E-value=6.5e-07  Score=76.12  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-----
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKY----------EVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-----  266 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grY----------eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg-----  266 (276)
                      ..|+++-++... .+.|++.|+.|.++++|          ++||..|++||+++|++.   .+|||++.+|..+|     
T Consensus        23 ~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~---~A~~~LG~ay~~lg~l~P~   99 (158)
T 1zu2_A           23 QDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWCIGNAYTSFAFLTPD   99 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHhcccCcc
Confidence            567777777776 45678899999888775          599999999999999996   68999999999985     


Q ss_pred             ------ChhHHHhhh
Q 023871          267 ------QVPLLLALI  275 (276)
Q Consensus       267 ------q~~eAI~aL  275 (276)
                            ++++|++++
T Consensus       100 ~~~a~g~~~eA~~~~  114 (158)
T 1zu2_A          100 ETEAKHNFDLATQFF  114 (158)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhhccHHHHHHHH
Confidence                  899999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.22  E-value=2.2e-06  Score=77.00  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=59.0

Q ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhH
Q 023871          204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPL  270 (276)
Q Consensus       204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~e  270 (276)
                      .|++.-+++.. ...++..|+.+++.|+|++|+..|++||.++|++.            ....+|+|+|.||.++|++++
T Consensus       135 ~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~  214 (336)
T 1p5q_A          135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA  214 (336)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            34444444443 45678999999999999999999999999999872            115789999999999999999


Q ss_pred             HHhhh
Q 023871          271 LLALI  275 (276)
Q Consensus       271 AI~aL  275 (276)
                      |+..+
T Consensus       215 A~~~~  219 (336)
T 1p5q_A          215 AIESC  219 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.22  E-value=2.5e-06  Score=70.94  Aligned_cols=57  Identities=35%  Similarity=0.405  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.++|++++|+..+
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~   62 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP---EALYWLARTQLKLGLVNPALENG   62 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            3467889999999999999999999999999986   58999999999999999999876

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.21  E-value=5.2e-06  Score=61.03  Aligned_cols=77  Identities=10%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             EEEEecC---cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871           87 YEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g  159 (276)
                      ++|+|.|   .+|+.+..+.++  +++|..|.|++.|+++|.+++||+|+.+-..   .+- ......+...|+..  ..
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~~~g~   77 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT---CVL-GHTHAQVVKIFQSIPIGA   77 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHTSCTTC
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCCC
Confidence            4566654   578888765443  7999999999999999999999999998643   221 01234555666653  45


Q ss_pred             ceEEEEee
Q 023871          160 PLLMKMQK  167 (276)
Q Consensus       160 pv~L~l~R  167 (276)
                      ++.|.+.|
T Consensus        78 ~v~l~v~R   85 (85)
T 2i04_A           78 SVDLELCR   85 (85)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            78888765

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=1.8e-06  Score=66.02  Aligned_cols=83  Identities=16%  Similarity=0.363  Sum_probs=61.6

Q ss_pred             cccceEEEEecC--cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           82 EKYEEYEVEIEQ--PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        82 ~~~~~y~V~l~K--PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .....+.|++.+  ++|+.+..+.+  .+++|..|.|++.|+++|.|++||+|+.+-..   .+...  +-.++..++..
T Consensus         8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~---~v~~~--~~~~~~~~~~~   82 (100)
T 2edp_A            8 GSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT---PLYGS--RQEALILIKGS   82 (100)
T ss_dssp             CCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTE---ECCSC--SHHHHHHHHTC
T ss_pred             CCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCE---Eccch--HHHHHHHHHhC
Confidence            345678888864  68888876533  37999999999999999449999999998653   33221  44566777765


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..++.|.+.|.-
T Consensus        83 ~~~v~l~v~R~~   94 (100)
T 2edp_A           83 FRILKLIVRRRN   94 (100)
T ss_dssp             CSSCEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            678899999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.21  E-value=2e-06  Score=75.01  Aligned_cols=83  Identities=10%  Similarity=0.005  Sum_probs=68.2

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++     ..|.++.++... ..-+++.|..+++.|+|++|+..|++||+++|++.   .+++|+|.+|.
T Consensus        12 ~~~~~~g~~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~   83 (281)
T 2c2l_A           12 NRLFVGRKYPEAA-----ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHTTCHHHHH-----HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHH-----HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence            3344778888884     455566665553 45578999999999999999999999999999985   68999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus        84 ~~g~~~~A~~~~   95 (281)
T 2c2l_A           84 EMESYDEAIANL   95 (281)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            999999999876

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.21  E-value=3.6e-06  Score=73.40  Aligned_cols=57  Identities=26%  Similarity=0.300  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..|+.+++.|+|++|+..|++||.++|++.   .+|+|+|.||.++|++++|+..+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~   61 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---VYYTNRALCYLKMQQPEQALADC   61 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            4567999999999999999999999999999985   68999999999999999999875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.21  E-value=7e-06  Score=68.97  Aligned_cols=55  Identities=25%  Similarity=0.433  Sum_probs=28.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ..|..+++.|+|++|+..|++++++.|++... ..+++++|.||.++|++++|+..
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  294 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI  294 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            44555555555555555555555555554332 33445555555555555555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.21  E-value=1.4e-06  Score=72.07  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH----------------HhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN----------------VACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN----------------~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.++.+|..+++.|+|++|+..|++++.++|++.   .+|++                +|.||.++|++++|+..+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT---EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH---HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35678999999999999999999999999999986   46777                999999999999999876

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.21  E-value=1.8e-06  Score=87.45  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+++-+++.. .+.+++.|..+.++|+|++|+..|++||+++|++.   .+|+|++.||..+++|++|++.+
T Consensus        98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~---~a~~~L~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A           98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHhhhhhHHHhcccHHHHHHHH
Confidence            557777777665 35567999999999999999999999999999996   58999999999999999998865

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.20  E-value=5.3e-06  Score=66.40  Aligned_cols=79  Identities=19%  Similarity=0.373  Sum_probs=59.8

Q ss_pred             ceEEEEecC----cceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--c
Q 023871           85 EEYEVEIEQ----PYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y  147 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~  147 (276)
                      ..++|++.|    .+|+.+...           .+.+++|..|.|+|.|+++|.|++||+|+++...      +..+  +
T Consensus        24 ~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~------~v~~~~~   97 (123)
T 2iwq_A           24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH   97 (123)
T ss_dssp             CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred             CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence            345666654    578887542           2358999999999999999999999999998753      2333  5


Q ss_pred             hhHHHHhhcccCceEEEEeecC
Q 023871          148 GRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       148 g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .++...|+...+++.|.+.|..
T Consensus        98 ~~~~~~l~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A           98 EQAVEAIRKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHHHHHHHHCCSSEEEEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEEECC
Confidence            5677788866779999998854

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.20  E-value=4.3e-06  Score=62.35  Aligned_cols=76  Identities=17%  Similarity=0.394  Sum_probs=56.9

Q ss_pred             EEEEec--CcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCc
Q 023871           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~--KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gp  160 (276)
                      +.|++.  .|+|+.+..+.+  .+++|..|.|++.|+++| |++||+|+.+...   .   ..++.  .....++....+
T Consensus         5 ~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~~~~~~~~l~~~g~~   77 (91)
T 2pkt_A            5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGE---N---TSNMTHLEAQNRIKGCTDN   77 (91)
T ss_dssp             EEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---E---CTTCCHHHHHHHHHTCSSE
T ss_pred             EEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---E---CCCCCHHHHHHHHHcCCCe
Confidence            344444  578888877644  489999999999999999 9999999998753   2   23333  556667765678


Q ss_pred             eEEEEeecC
Q 023871          161 LLMKMQKRY  169 (276)
Q Consensus       161 v~L~l~R~~  169 (276)
                      +.|.+.|.-
T Consensus        78 v~l~v~R~g   86 (91)
T 2pkt_A           78 LTLTVARSE   86 (91)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEECC
Confidence            899999853

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.20  E-value=1.9e-06  Score=65.97  Aligned_cols=85  Identities=20%  Similarity=0.306  Sum_probs=62.5

Q ss_pred             cccccceEEEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           80 QEEKYEEYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        80 ~~~~~~~y~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      .....+++.|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+.+-..   .+- ...+..+...|+.
T Consensus        10 ~~~~~~~~~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~---~v~-~~~~~~~~~~l~~   82 (100)
T 1whd_A           10 DPENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PVE-HWKCVELAHEIRS   82 (100)
T ss_dssp             SCCCCEEEEEEEECCSSSSSCBCCC--SSSCBCCBCCTTSHHHHHT-CCSSCEEEEETTE---ECT-TCCHHHHHHHHHH
T ss_pred             CccccceEEEEEECCCCeeeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHc
Confidence            445677888999775   6666654  3689999999999999999 9999999998753   111 1123456667776


Q ss_pred             ccCceEEEEeecCCC
Q 023871          157 RVGPLLMKMQKRYGK  171 (276)
Q Consensus       157 r~gpv~L~l~R~~~~  171 (276)
                      ..+.+.|.+.|..++
T Consensus        83 ~~~~v~l~v~R~~~~   97 (100)
T 1whd_A           83 CPSEIILLVWRVSGP   97 (100)
T ss_dssp             CSSEEEEEEEECCSS
T ss_pred             CCCeEEEEEEECCCC
Confidence            567799999987654

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.20  E-value=4.7e-06  Score=63.62  Aligned_cols=83  Identities=22%  Similarity=0.403  Sum_probs=59.6

Q ss_pred             ccccceEEEEecC--cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           81 EEKYEEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        81 ~~~~~~y~V~l~K--PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      +...+.+.|++.|  ++|+.+..+.          +.+++|..|.|++.|++ | |++||+|+.+...   .+=. ...-
T Consensus         7 ~~~~~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~---~v~~-~~~~   80 (103)
T 1n7t_A            7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFIN-IEHG   80 (103)
T ss_dssp             SSSCCCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTE---ECSS-CCHH
T ss_pred             CcccEEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCE---ECCC-CCHH
Confidence            3455667777766  5778887643          44999999999999999 7 9999999998742   2211 1233


Q ss_pred             hHHHHhhcccCceEEEEeecC
Q 023871          149 RTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~  169 (276)
                      .+...++....++.|.+.|..
T Consensus        81 ~~~~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           81 QAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHHHHHCCSEEEEEEECCC
T ss_pred             HHHHHhhcCCCeEEEEEEecC
Confidence            556666655677899999854

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.19  E-value=4.8e-06  Score=68.11  Aligned_cols=83  Identities=20%  Similarity=0.357  Sum_probs=61.4

Q ss_pred             cccccceEEEEecC-------cceeEEeeeC--------------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871           80 QEEKYEEYEVEIEQ-------PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG  138 (276)
Q Consensus        80 ~~~~~~~y~V~l~K-------PLGl~f~e~~--------------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG  138 (276)
                      ..+....+.|+|.|       +||+.+..+.              +.+++|..|.|++.|+++| |++||+|+.+...  
T Consensus        18 ~~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~--   94 (139)
T 2vz5_A           18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW--   94 (139)
T ss_dssp             ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTE--
T ss_pred             ccCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE--
Confidence            33444667888888       7999986532              3599999999999999999 9999999998752  


Q ss_pred             Ccceecc--cchhHHHHhhccc-CceEEEEeecC
Q 023871          139 TEIWPAA--EYGRTMYTIRQRV-GPLLMKMQKRY  169 (276)
Q Consensus       139 devw~a~--~~g~~~~air~r~-gpv~L~l~R~~  169 (276)
                          +..  .+..+...|+... .++.|.+.|.-
T Consensus        95 ----~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  124 (139)
T 2vz5_A           95 ----DMTMVTHDQARKRLTKRSEEVVRLLVTRQS  124 (139)
T ss_dssp             ----ECTTCCHHHHHHHHCCTTCSEEEEEEEECC
T ss_pred             ----EcCCCCHHHHHHHHHhCCCCEEEEEEEECC
Confidence                222  3556777777655 46899999854

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.19  E-value=1e-05  Score=60.90  Aligned_cols=78  Identities=17%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      ....|+|.|   ++|+.+..  +.+++|..|.+++.|+++| |++||+|+.+...   .+-....+ +++..++. ..++
T Consensus         8 ~~r~v~l~~~~~~~G~~l~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~~-~~~~~~~~-g~~v   79 (93)
T 2dls_A            8 VQRCVIIQKDQHGFGFTVSG--DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGT---MVTNSSHL-EVVKLIKS-GAYV   79 (93)
T ss_dssp             CEEEEEEECSSSSCCEEEEC--SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTE---ECSSSCHH-HHHHHHTS-SSEE
T ss_pred             CCEEEEEEeCCCceeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCCHH-HHHHhhcC-CCEE
Confidence            345666665   46777653  5689999999999999999 9999999998753   33333333 56666764 7789


Q ss_pred             EEEEeecCC
Q 023871          162 LMKMQKRYG  170 (276)
Q Consensus       162 ~L~l~R~~~  170 (276)
                      .|.+.|...
T Consensus        80 ~l~v~R~~~   88 (93)
T 2dls_A           80 ALTLLGSSS   88 (93)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEECCC
Confidence            999999654

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.19  E-value=6e-06  Score=65.57  Aligned_cols=82  Identities=15%  Similarity=0.339  Sum_probs=60.7

Q ss_pred             ccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      ..+.+.|++.+   ++|+.+....+     .+++|..|.|++.|+++|.|++||+|+.+...   .+-. ..+..+...|
T Consensus        28 ~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~---~v~~-~~~~~~~~~l  103 (121)
T 2kom_A           28 IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV---DLVG-KSQEEVVSLL  103 (121)
T ss_dssp             SCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTE---ECTT-SCHHHHHHHH
T ss_pred             CCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EcCC-CCHHHHHHHH
Confidence            45778888876   47888876643     58999999999999999999999999998753   2211 1134566667


Q ss_pred             hcc--cCceEEEEeec
Q 023871          155 RQR--VGPLLMKMQKR  168 (276)
Q Consensus       155 r~r--~gpv~L~l~R~  168 (276)
                      +..  ..++.|++.|.
T Consensus       104 ~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A          104 RSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             HHCCSSCEEEEEEEEC
T ss_pred             hcCCCCCEEEEEEEeC
Confidence            753  45789999884

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.18  E-value=2.5e-06  Score=80.96  Aligned_cols=79  Identities=15%  Similarity=0.034  Sum_probs=65.4

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|+     ..|+++.++... ...+...|..++++|+|++|+..|++||+++|++.   .+|+|+|.||.++|+
T Consensus        18 ~~g~~~~A~-----~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           18 KAKDYENAI-----KFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYRRAASNMALGK   89 (477)
T ss_dssp             TTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHTC
T ss_pred             HhCCHHHHH-----HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC
Confidence            456777774     456666666554 45577999999999999999999999999999985   689999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|++.+
T Consensus        90 ~~eA~~~~   97 (477)
T 1wao_1           90 FRAALRDY   97 (477)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.18  E-value=5.7e-06  Score=67.16  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=67.8

Q ss_pred             cCCCcchhHHHHHH--HHHhhHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHHHHHHh
Q 023871          189 NSGVISNRVREIQM--QNYMKKKE--QKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVA  259 (276)
Q Consensus       189 ~~G~i~~al~Eiq~--~nYkk~Ke--lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A~YN~A  259 (276)
                      ..|++++++..+++  ..+++...  -......+...|..++..|+|++|+..|++|+++.     ++++....+++|++
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            46888888777766  33333321  12334556799999999999999999999999875     55566678999999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|++.+
T Consensus        93 ~~~~~~g~~~~A~~~~  108 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLC  108 (283)
T ss_dssp             HHHHTTTCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHH
Confidence            9999999999999875

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.18  E-value=3e-06  Score=62.17  Aligned_cols=78  Identities=23%  Similarity=0.400  Sum_probs=56.0

Q ss_pred             eEEEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           86 EYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        86 ~y~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ..+|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+.+...   .+-... +..++..++...+++.
T Consensus         3 ~r~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~-~~~~~~~l~~~~~~v~   75 (83)
T 2kv8_A            3 VRSVEVARGRAGYGFTLSG--QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEI---NVKKAS-HEDVVKLIGKCSGVLH   75 (83)
T ss_dssp             EEEEEECCCSSCCSCBCCC--SSSCBCCBCCTTSTTTTTT-CCTTCEEEEETTE---ECSSCC-HHHHHHHHTTCSSCEE
T ss_pred             cEEEEEEeCCCcccEEEEc--CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHhCCCeEE
Confidence            356677654   4555433  4479999999999999999 9999999998743   332221 3566777776567899


Q ss_pred             EEEeecCC
Q 023871          163 MKMQKRYG  170 (276)
Q Consensus       163 L~l~R~~~  170 (276)
                      |.+.|..|
T Consensus        76 l~v~R~~g   83 (83)
T 2kv8_A           76 MVIAEGVG   83 (83)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99999754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.17  E-value=2.1e-06  Score=79.95  Aligned_cols=55  Identities=7%  Similarity=-0.106  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+..|..+..+|+|++|+..|++||+++|++.   .+|+|++.||.++|++++|+..+
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~---~a~~~lg~~~~~~g~~~eAl~~~  223 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLWDNELQYV  223 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcCChHHHHHHH
Confidence            45555555555555555555555555555553   45666666666666666666543

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.17  E-value=3.3e-06  Score=67.56  Aligned_cols=80  Identities=21%  Similarity=0.414  Sum_probs=59.2

Q ss_pred             ceEEEEecCc-----ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           85 EEYEVEIEQP-----YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        85 ~~y~V~l~KP-----LGl~f~e~~-----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      +...|+|.|.     ||+.+....           +++++|..|.++|.|+++|.+++||+|+.+...   .+ ....+.
T Consensus        29 ~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v-~~~~~~  104 (128)
T 1nf3_C           29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGI---EV-SGKSLD  104 (128)
T ss_dssp             TCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTE---ES-TTCCHH
T ss_pred             ccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHH
Confidence            3456677664     888887542           248999999999999999999999999998742   33 112445


Q ss_pred             hHHHHhhcccCceEEEEeec
Q 023871          149 RTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~  168 (276)
                      .+...|+...+.+.|.+.|.
T Consensus       105 ~~~~~l~~~~~~v~l~v~r~  124 (128)
T 1nf3_C          105 QVTDMMIANSRNLIITVRPA  124 (128)
T ss_dssp             HHHHHHHHTTTSEEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEEEC
Confidence            56677776667899999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.17  E-value=9.6e-06  Score=66.72  Aligned_cols=56  Identities=14%  Similarity=0.202  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ++..|..+...|+|++|+..|+++++++|++.   .+|++++.||.++|++++|+..++
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~  132 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPLAIQYME  132 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHccCHHHHHHHHH
Confidence            56778888888888888888888888888875   578888888888888888887653

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.17  E-value=8.5e-06  Score=65.94  Aligned_cols=81  Identities=17%  Similarity=0.313  Sum_probs=59.3

Q ss_pred             EEEEecC----cceeEEeeeCCC--------------CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           87 YEVEIEQ----PYGLKFAKGRDG--------------GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~dG--------------gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      ..|+|.|    ++|+.+..+.+.              |++|..|.+||.|+++| |++||+|+.+...   .+- -....
T Consensus        29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~---~v~-~~~~~  103 (132)
T 3l4f_D           29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ---NVV-KVGHR  103 (132)
T ss_dssp             CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSS---BCT-TSCHH
T ss_pred             EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHH
Confidence            4666665    688888877542              69999999999999999 9999999998742   221 11234


Q ss_pred             hHHHHhhcccCceEEEEeecCCCc
Q 023871          149 RTMYTIRQRVGPLLMKMQKRYGKM  172 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~~~~  172 (276)
                      ++...|+.....+.|++.|...+.
T Consensus       104 ~~~~~l~~~g~~v~l~v~~~~~~~  127 (132)
T 3l4f_D          104 QVVNMIRQGGNTLMVKVVMVTRHP  127 (132)
T ss_dssp             HHHHHHHHTTTEEEEEEECCCC--
T ss_pred             HHHHHHHcCCCEEEEEEEECCCCC
Confidence            667777776678899988865544

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.16  E-value=2.1e-06  Score=65.79  Aligned_cols=81  Identities=22%  Similarity=0.365  Sum_probs=59.4

Q ss_pred             ceEEEEec--CcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~--KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ++++|+|.  .++|+.+..+.+.  +++|..|.+++.|+++| |++||+|+.+...   .+... ..-..+..++....+
T Consensus         5 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A            5 SSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGI---SAQGM-THLEAQNKIKACTGS   79 (103)
T ss_dssp             CCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTE---ECSSC-CHHHHHHHHHHCSSE
T ss_pred             CEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCe
Confidence            55777776  6788888776543  69999999999999999 9999999998743   33222 223445566654567


Q ss_pred             eEEEEeecCC
Q 023871          161 LLMKMQKRYG  170 (276)
Q Consensus       161 v~L~l~R~~~  170 (276)
                      +.|.+.|...
T Consensus        80 v~l~v~R~g~   89 (103)
T 1wf7_A           80 LNMTLQRASA   89 (103)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEEEeCCC
Confidence            8999988543

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.16  E-value=2.5e-06  Score=65.71  Aligned_cols=84  Identities=21%  Similarity=0.402  Sum_probs=63.1

Q ss_pred             cccceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           82 EKYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        82 ~~~~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      ...+...|+|.|   ++|+.+....+ .+++|..|.+++.|+++|.|++||+|+++-..   .+-.. ....+...++..
T Consensus        12 ~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~---~v~~~-~~~~~~~~~~~~   87 (113)
T 1um7_A           12 DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV---NLRNA-THEQAAAALKRA   87 (113)
T ss_dssp             CCCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSC---BCTTC-CHHHHHHHHHSC
T ss_pred             CCCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHhC
Confidence            345678899987   68898877654 59999999999999999989999999998753   22221 123455566655


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..++.|.+.|..
T Consensus        88 ~~~v~l~v~r~~   99 (113)
T 1um7_A           88 GQSVTIVAQYRP   99 (113)
T ss_dssp             CSEEEEEEECCH
T ss_pred             CCcEEEEEEECc
Confidence            677899998854

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.16  E-value=7.6e-06  Score=65.58  Aligned_cols=70  Identities=21%  Similarity=0.416  Sum_probs=54.7

Q ss_pred             cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhc--ccCceEEEEee
Q 023871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ--RVGPLLMKMQK  167 (276)
Q Consensus        92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~--r~gpv~L~l~R  167 (276)
                      ..+||+.+..+.+++++|..|.|++.|+++| |++||+|+++...   .   ...+  ..+..+|..  ...++.|.++|
T Consensus        38 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~---~---v~~~~~~~~~~~l~~~~~g~~v~l~v~R  110 (124)
T 3tsv_A           38 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---D---FTNIIREEAVLFLLDLPKGEEVTILAQK  110 (124)
T ss_dssp             SSCCCEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEETTE---E---CSSCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CCceeEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---E---CCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            4589999988778899999999999999999 9999999998643   2   2233  455565663  34578999988


Q ss_pred             c
Q 023871          168 R  168 (276)
Q Consensus       168 ~  168 (276)
                      .
T Consensus       111 ~  111 (124)
T 3tsv_A          111 K  111 (124)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.16  E-value=4.5e-06  Score=65.26  Aligned_cols=80  Identities=23%  Similarity=0.457  Sum_probs=57.4

Q ss_pred             EEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871           88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        88 ~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~  164 (276)
                      .|+|.|   ++|+.+....+++++|..|.+++.|+++| |++||+|+.+...   .+-....+- ....++....++.|.
T Consensus        22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~---~v~~~~~~~-~~~~~~~~g~~v~l~   96 (117)
T 1uit_A           22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGI---NLRSATEQQ-ARLIIGQQCDTITIL   96 (117)
T ss_dssp             EEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTE---ETTTCCHHH-HHHHTTSCCSEEEEE
T ss_pred             EEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCCHHH-HHHHHHcCCCeEEEE
Confidence            466655   79999988778899999999999999999 9999999998743   332222221 222334445678999


Q ss_pred             EeecCCCc
Q 023871          165 MQKRYGKM  172 (276)
Q Consensus       165 l~R~~~~~  172 (276)
                      +.|....+
T Consensus        97 v~r~~~~~  104 (117)
T 1uit_A           97 AQYNPHVH  104 (117)
T ss_dssp             ECCCSCCC
T ss_pred             EEECCchh
Confidence            99865443

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.16  E-value=6.4e-06  Score=61.24  Aligned_cols=78  Identities=19%  Similarity=0.368  Sum_probs=57.4

Q ss_pred             EEEec---CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEE
Q 023871           88 EVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (276)
Q Consensus        88 ~V~l~---KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L  163 (276)
                      .|+|.   .++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+...   .+-. .....+...|+...+.+.+
T Consensus         6 ~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~~~~~~~   80 (91)
T 1g9o_A            6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGE---NVEK-ETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             EEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCSSEEEE
T ss_pred             EEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCcEEE
Confidence            44454   468899877654 599999999999999999 9999999998753   2211 1244677778876788877


Q ss_pred             EEeecCC
Q 023871          164 KMQKRYG  170 (276)
Q Consensus       164 ~l~R~~~  170 (276)
                      .+.|+.+
T Consensus        81 ~~~~r~~   87 (91)
T 1g9o_A           81 LVVDPET   87 (91)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCc
Confidence            7666554

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.15  E-value=1.2e-05  Score=61.63  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=57.6

Q ss_pred             cccceEEEEecCc----ceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           82 EKYEEYEVEIEQP----YGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        82 ~~~~~y~V~l~KP----LGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      +.++.++|+|.|.    +|+.+..+.+        .+++|..|.|++.|+ +| |++||+|+++...   .+-....+ .
T Consensus         4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~---~v~~~~~~-~   77 (107)
T 2h2b_A            4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGV---SMDNVEHA-F   77 (107)
T ss_dssp             CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTE---ECTTCCHH-H
T ss_pred             ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCE---ECCCccHH-H
Confidence            4457788888875    7888886543        499999999999999 77 9999999998743   22222222 2


Q ss_pred             HHHHhhcccCceEEEEeecC
Q 023871          150 TMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R~~  169 (276)
                      .+..++....++.|.+.|.-
T Consensus        78 ~~~~~~~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           78 AVQQLRKSGKNAKITIRRKK   97 (107)
T ss_dssp             HHHHHHTCCSEEEEEEEEES
T ss_pred             HHHHhhCCCCEEEEEEEECC
Confidence            22233434567899998853

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.14  E-value=1.3e-05  Score=59.21  Aligned_cols=91  Identities=12%  Similarity=0.023  Sum_probs=65.9

Q ss_pred             HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHh
Q 023871          185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVA  259 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~A  259 (276)
                      ..-...|++++++..++.  ..+.+.........-....|..++..|+|++|+..|++++++.+   +......++++++
T Consensus        57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la  136 (164)
T 3ro3_A           57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG  136 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHH
Confidence            344477888888666655  11222111122244567889999999999999999999997643   3344478899999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|++.+
T Consensus       137 ~~~~~~g~~~~A~~~~  152 (164)
T 3ro3_A          137 NAYTALGNHDQAMHFA  152 (164)
T ss_dssp             HHHHHHTCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHH
Confidence            9999999999999876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.14  E-value=4.8e-06  Score=68.22  Aligned_cols=84  Identities=19%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     +.++... ..-++..|..++..|+|++|+..|++|+.++|++.   .+|++++.||
T Consensus        50 ~~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~  121 (275)
T 1xnf_A           50 GVLYDSLGLRALARNDFSQ-----ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---HHHHHHHHHH
Confidence            3445577888888655544     3333322 34467889999999999999999999999999875   6899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|+..+
T Consensus       122 ~~~g~~~~A~~~~  134 (275)
T 1xnf_A          122 YYGGRDKLAQDDL  134 (275)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHhccHHHHHHHH
Confidence            9999999999875

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.14  E-value=5.3e-06  Score=65.87  Aligned_cols=83  Identities=20%  Similarity=0.336  Sum_probs=61.2

Q ss_pred             ccceEEEEecC-----cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           83 KYEEYEVEIEQ-----PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        83 ~~~~y~V~l~K-----PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      +.+..+|++.|     .||+.+....+    ++++|..|.+++.|+++|.|++||+|+.+...   .|   ..+..+..+
T Consensus        17 ~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~---~v---~~~~~~~~~   90 (124)
T 1wh1_A           17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI---EV---QNREEAVAL   90 (124)
T ss_dssp             SCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSC---BC---CSHHHHHHH
T ss_pred             cceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC---CCHHHHHHH
Confidence            33444445433     58999987653    79999999999999999989999999998743   33   345566677


Q ss_pred             hhcc-cCceEEEEeecCCC
Q 023871          154 IRQR-VGPLLMKMQKRYGK  171 (276)
Q Consensus       154 ir~r-~gpv~L~l~R~~~~  171 (276)
                      |+.. ..++.|.+.|.-..
T Consensus        91 l~~~~g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           91 LTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             HTCSSCCSCCEEEEECSSC
T ss_pred             HHhCCCCEEEEEEEECCEE
Confidence            7764 35789999986544

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.14  E-value=1.4e-06  Score=66.12  Aligned_cols=85  Identities=19%  Similarity=0.409  Sum_probs=62.7

Q ss_pred             ccceEEEEecC---cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      ..+.+.|++.|   .+|+.+..+.+.  +++|..|.+++.|+++|.|++||+|+.+...   .+-.. .+..++..++..
T Consensus         9 ~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~   84 (103)
T 1wfv_A            9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE---STRDM-THARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTE---ECSSC-CHHHHHHHHHHH
T ss_pred             CceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHcC
Confidence            34667888865   588988877553  8999999999999999999999999998753   22211 134556666644


Q ss_pred             cCceEEEEeecCCC
Q 023871          158 VGPLLMKMQKRYGK  171 (276)
Q Consensus       158 ~gpv~L~l~R~~~~  171 (276)
                      ..++.|.+.|....
T Consensus        85 g~~v~l~v~R~~~~   98 (103)
T 1wfv_A           85 GRRVRLLLKRGTGS   98 (103)
T ss_dssp             CSEECEEEECTTCS
T ss_pred             CCeEEEEEEECCCC
Confidence            56789999886543

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.14  E-value=4.3e-06  Score=66.53  Aligned_cols=84  Identities=18%  Similarity=0.297  Sum_probs=61.3

Q ss_pred             cccceEEEEecC----cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           82 EKYEEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        82 ~~~~~y~V~l~K----PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      .+.+..+|+|.|    ++|+.+..+.+     .++||..|.|+|.|+++|.|++||+|+.+-..   .+-. ...-.++.
T Consensus        21 ~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~---~v~~-~~~~~~~~   96 (120)
T 2iwo_A           21 QSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT---STEG-MTHTQAVN   96 (120)
T ss_dssp             ----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CBHHHHHH
T ss_pred             CCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-CCHHHHHH
Confidence            344557788875    78899887643     38999999999999999559999999998753   2211 13446777


Q ss_pred             HhhcccCceEEEEeecC
Q 023871          153 TIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       153 air~r~gpv~L~l~R~~  169 (276)
                      .|+...+.+.|++.|..
T Consensus        97 ~l~~~~~~v~l~v~r~g  113 (120)
T 2iwo_A           97 LLKNASGSIEMQVVAGG  113 (120)
T ss_dssp             HHHHCCSEEEEEEECCT
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            88877778999999854

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.14  E-value=1.3e-06  Score=81.42  Aligned_cols=79  Identities=9%  Similarity=-0.061  Sum_probs=51.0

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~gr-YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ..|++++++..     |.++-++... ...|+..|..+..+|+ |++||..|++||.++|++.   .+|+|++.||.++|
T Consensus       109 ~~g~~~~Al~~-----~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~---~a~~~~g~~~~~~g  180 (382)
T 2h6f_A          109 RDERSERAFKL-----TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLR  180 (382)
T ss_dssp             HTCCCHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHT
T ss_pred             HCCChHHHHHH-----HHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcc
Confidence            56677766443     3444444444 3445677777777775 7777777777777777764   46777777777777


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|+..+
T Consensus       181 ~~~eAl~~~  189 (382)
T 2h6f_A          181 DPSQELEFI  189 (382)
T ss_dssp             CCTTHHHHH
T ss_pred             CHHHHHHHH
Confidence            777776654

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.13  E-value=1e-05  Score=64.00  Aligned_cols=82  Identities=16%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      ...+|+|.|    .+|+.+..+.+  .+++|..|.+||.|+++|.+++||+|+++...   .+ .-..+..+...|+...
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR---SI-KGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHSC
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCC
Confidence            456677777    58999887644  48999999999999999999999999998743   22 1113446677788777


Q ss_pred             CceEEEEeecCC
Q 023871          159 GPLLMKMQKRYG  170 (276)
Q Consensus       159 gpv~L~l~R~~~  170 (276)
                      +.+.|.+.|..+
T Consensus        95 ~~v~l~v~r~~~  106 (125)
T 3hpk_A           95 GEVTIHYNKLQA  106 (125)
T ss_dssp             SEEEEEEEEECS
T ss_pred             CeEEEEEEECCC
Confidence            789999998554

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.13  E-value=1.2e-05  Score=63.02  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=60.8

Q ss_pred             cccccceEEEEec----CcceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871           80 QEEKYEEYEVEIE----QPYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY  147 (276)
Q Consensus        80 ~~~~~~~y~V~l~----KPLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~  147 (276)
                      .+...+.++|+|.    .++|+.+..+.+        .+++|..|.|++.|+ +| |++||+|+.+...   .+-.. ..
T Consensus         9 ~~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~---~v~~~-~~   82 (117)
T 2csj_A            9 EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGT---PMEDV-LH   82 (117)
T ss_dssp             SCEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSC---BCBTC-CH
T ss_pred             ccccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCE---ECCCc-CH
Confidence            3455677888886    468899887643        389999999999996 66 9999999998742   33111 22


Q ss_pred             hhHHHHhhcccCceEEEEeecC
Q 023871          148 GRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       148 g~~~~air~r~gpv~L~l~R~~  169 (276)
                      -.++.+++....++.|.+.|+.
T Consensus        83 ~~~~~~l~~~~~~v~l~v~R~~  104 (117)
T 2csj_A           83 SFAVQQLRKSGKIAAIVVKRPR  104 (117)
T ss_dssp             HHHHHHHHHSCSEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCeEEEEEEECC
Confidence            3456667765678999999854

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.12  E-value=6.9e-06  Score=61.39  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=57.2

Q ss_pred             EEEEecC---cceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      -.|+|.|   .+|+.+..+.+. +++|..|.+++.|+++| |++||+|+++...   .+-. ..+..+...|+...+.+.
T Consensus         7 r~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~~~~~~   81 (95)
T 3r68_A            7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK---SVEA-LDHDGVVEMIRKGGDQTT   81 (95)
T ss_dssp             EEEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTE---ECTT-CCHHHHHHHHHTTTTEEE
T ss_pred             EEEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCCeEE
Confidence            3455554   588998876443 99999999999999999 9999999998753   2211 122566777887778888


Q ss_pred             EEEeecCCC
Q 023871          163 MKMQKRYGK  171 (276)
Q Consensus       163 L~l~R~~~~  171 (276)
                      +.+.|+-++
T Consensus        82 ~~~~r~~~~   90 (95)
T 3r68_A           82 LLVLDKELE   90 (95)
T ss_dssp             EEEEECC--
T ss_pred             EEEECCccc
Confidence            888886553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.12  E-value=4.2e-06  Score=74.62  Aligned_cols=81  Identities=12%  Similarity=-0.039  Sum_probs=64.2

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      -...|++++++..++     +..++......++..|..+++.|+|++|+..|+++++++|++.   .+|++++.||.++|
T Consensus        16 ~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g   87 (514)
T 2gw1_A           16 FFRNKKYDDAIKYYN-----WALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS---KVLLRRASANEGLG   87 (514)
T ss_dssp             HHHTSCHHHHHHHHH-----HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHH-----HHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHHh
Confidence            347788888855444     4444444455677889999999999999999999999999885   58999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|+..+
T Consensus        88 ~~~~A~~~~   96 (514)
T 2gw1_A           88 KFADAMFDL   96 (514)
T ss_dssp             CHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.11  E-value=1.2e-05  Score=65.15  Aligned_cols=92  Identities=11%  Similarity=0.008  Sum_probs=68.6

Q ss_pred             HHHhhcCCCcchhHHHHHHHH--HhhH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHH
Q 023871          184 IRAERNSGVISNRVREIQMQN--YMKK--KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVA  254 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~n--Ykk~--Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A  254 (276)
                      ...-...|++++++..++..-  +++.  ..-......+...|..++..|+|++|+..|++|+.+.     |+++....+
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            345557888888866655521  1111  0013334456789999999999999999999999873     555556789


Q ss_pred             HHHHhHHHHhcCChhHHHhhh
Q 023871          255 SYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++|+|.||..+|++++|+..+
T Consensus       130 ~~~la~~~~~~g~~~~A~~~~  150 (283)
T 3edt_B          130 LNNLALLCQNQGKAEEVEYYY  150 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.11  E-value=4.4e-06  Score=68.46  Aligned_cols=79  Identities=11%  Similarity=0.088  Sum_probs=63.4

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQ-----KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kel-----kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..|++++++..++.     ..+.     ....+.++..|..++..|+|++|+..|++|+.++|++.   .+|+++|.||.
T Consensus        17 ~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~   88 (275)
T 1xnf_A           17 PTLQQEVILARMEQ-----ILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---EVFNYLGIYLT   88 (275)
T ss_dssp             CCHHHHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHH-----HHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHH
Confidence            34666666555543     3322     23345678999999999999999999999999999985   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus        89 ~~~~~~~A~~~~  100 (275)
T 1xnf_A           89 QAGNFDAAYEAF  100 (275)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HccCHHHHHHHH
Confidence            999999999876

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.10  E-value=9e-06  Score=60.36  Aligned_cols=80  Identities=24%  Similarity=0.405  Sum_probs=57.0

Q ss_pred             ceEEEEecC--cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~K--PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ++++|++++  ++|+.+..+.  +.+++|..|.|++.|+++| |++||+|+.+-..   .+-.. .+..++..++....+
T Consensus         3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~   77 (89)
T 2q3g_A            3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGE---NAGSL-THIEAQNKIRACGER   77 (89)
T ss_dssp             EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EGGGC-CHHHHHHHHHTCTTE
T ss_pred             cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCE
Confidence            446666654  5677776543  3489999999999999999 9999999998643   22211 344566677755667


Q ss_pred             eEEEEeecC
Q 023871          161 LLMKMQKRY  169 (276)
Q Consensus       161 v~L~l~R~~  169 (276)
                      +.|.+.|..
T Consensus        78 v~l~v~R~~   86 (89)
T 2q3g_A           78 LSLGLSRAI   86 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            899998853

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.10  E-value=5.7e-06  Score=62.06  Aligned_cols=73  Identities=22%  Similarity=0.449  Sum_probs=56.5

Q ss_pred             CcceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871           93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus        93 KPLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .+||+.+.... +++++|..|.++|.|+++|.|++||+|+.+...   .+ ....+..+...|+...+++.|++.|..
T Consensus        15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (93)
T 3o46_A           15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGI---PV-EDKRPEEIIQILAQSQGAITFKIIPGS   88 (93)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ES-TTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred             CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            47999998753 569999999999999999999999999998642   33 113444667778877778999988754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.10  E-value=1.9e-05  Score=69.82  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=58.5

Q ss_pred             hhcCCCcchhHHHHHHH-----HHhh---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHH
Q 023871          187 ERNSGVISNRVREIQMQ-----NYMK---KKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYN  257 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~-----nYkk---~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN  257 (276)
                      -...|++++++..++..     ....   ....-......+..|..+++.|+|++|+..|++++.+.|++... ..++++
T Consensus       221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  300 (450)
T 2y4t_A          221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER  300 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            34667777777766651     1111   11111122233466888888888888888888888888887554 557788


Q ss_pred             HhHHHHhcCChhHHHhhh
Q 023871          258 VACCYSKLNQVPLLLALI  275 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aL  275 (276)
                      ++.||.++|++++|+..+
T Consensus       301 l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          301 ICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             HHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH
Confidence            888888888888887654

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.09  E-value=5.7e-06  Score=66.24  Aligned_cols=81  Identities=11%  Similarity=0.240  Sum_probs=60.0

Q ss_pred             ceEEEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--  157 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--  157 (276)
                      +.++|+|.|   .+|+.+..+.+  .+++|..|.++|.|+++|.|++||+|+.+-..   .+ .-..+..+...|+..  
T Consensus        18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v-~~~~~~~~~~~l~~~~~   93 (129)
T 2kpk_A           18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT---CV-LGHTHAQVVKIFQSIPI   93 (129)
T ss_dssp             EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTE---EC-TTSCHHHHHHHHHHSCT
T ss_pred             cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCC
Confidence            557777765   58888876533  37999999999999999999999999998643   11 111234566677754  


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..++.|++.|..
T Consensus        94 g~~v~l~v~R~~  105 (129)
T 2kpk_A           94 GASVDLELCRGY  105 (129)
T ss_dssp             TEEEEEEEEECS
T ss_pred             CCeEEEEEEeCC
Confidence            456999999965

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=6.7e-06  Score=61.25  Aligned_cols=78  Identities=22%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             EEEec---CcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           88 EVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        88 ~V~l~---KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      .|+|.   .++|+.+..+.  +++++|..|.+++.|+++|.|++||+|+++...   .+-.. .+..++..++...+++.
T Consensus         8 ~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v~   83 (93)
T 2dkr_A            8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV---SVEGE-QHEKAVELLKAAQGSVK   83 (93)
T ss_dssp             EEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTE---ECTTS-CHHHHHHHHHHCCSEEE
T ss_pred             EEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCcEE
Confidence            45554   46889987643  469999999999999999669999999998642   22111 34456667775567899


Q ss_pred             EEEeecC
Q 023871          163 MKMQKRY  169 (276)
Q Consensus       163 L~l~R~~  169 (276)
                      |.+.|..
T Consensus        84 l~v~r~~   90 (93)
T 2dkr_A           84 LVVRSGP   90 (93)
T ss_dssp             EEECCCC
T ss_pred             EEEEeCC
Confidence            9998864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.09  E-value=9.5e-06  Score=65.36  Aligned_cols=81  Identities=10%  Similarity=-0.003  Sum_probs=64.9

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      -...|++++++..++.     +.++... ..-+...|..+++.|+|++|+..|+++++++|++.   .+|++++.||.++
T Consensus       149 ~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~  220 (258)
T 3uq3_A          149 YFTKSDWPNAVKAYTE-----MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRKATAQIAV  220 (258)
T ss_dssp             HHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHH
Confidence            3466777777555444     3333332 34467889999999999999999999999999985   6899999999999


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++|+..+
T Consensus       221 g~~~~A~~~~  230 (258)
T 3uq3_A          221 KEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            9999999876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.09  E-value=3.6e-06  Score=77.51  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------------~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .......++..|+.+++.|+|++|+..|++||.+.|+.             +....+|+|+|.||.+++++++|++.+
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  296 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  296 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            33455667899999999999999999999999844331             223678999999999999999999875

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.09  E-value=1.2e-05  Score=63.55  Aligned_cols=88  Identities=17%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             cccccceEEEEecC----cceeEEeee------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           80 QEEKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        80 ~~~~~~~y~V~l~K----PLGl~f~e~------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      .-...+.++|+|.|    .+|+.+..+      .+..++|..|.+++.|+++|.|++||+|+.+...   .+-. ..+.+
T Consensus        10 ~~~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~-~~~~~   85 (122)
T 1v5q_A           10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI---PTED-STFEE   85 (122)
T ss_dssp             CCCCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTE---ESSS-SCHHH
T ss_pred             ccccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHH
Confidence            34456889999975    478888754      2347999999999999999999999999998642   2211 12555


Q ss_pred             HHHHhhcc--cCceEEEEeecCCC
Q 023871          150 TMYTIRQR--VGPLLMKMQKRYGK  171 (276)
Q Consensus       150 ~~~air~r--~gpv~L~l~R~~~~  171 (276)
                      +...|+..  ..++.|.+.|...+
T Consensus        86 ~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           86 ANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             HHHHHHhCCCCCeEEEEEEECCcc
Confidence            66677754  45899999996543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.09  E-value=2.1e-06  Score=77.31  Aligned_cols=62  Identities=18%  Similarity=0.240  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH--------------HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES--------------SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~--------------a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++.++..|+.+++.|+|++|+..|++||.+.|++..+              ..+|+|+|.||.+++++++|+..+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34567799999999999999999999999999987521              248999999999999999999875

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.09  E-value=5.5e-06  Score=59.62  Aligned_cols=67  Identities=25%  Similarity=0.405  Sum_probs=51.9

Q ss_pred             cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEEeec
Q 023871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .+++|+.+.    ++++|..|.+++.|+++|.|++||+|+.+...      +..  .+..+...|+...+++.|.+.|.
T Consensus        12 ~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           12 NEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGT------VTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             TCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTE------ECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            457787766    68999999999999999989999999998642      233  45556677776567888888873

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.08  E-value=1.3e-05  Score=62.49  Aligned_cols=82  Identities=20%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             ccceEEEEecC----cceeEEeeeC----CC-----CeEEEEeCCCCCccc-ccCcccCCEEEEeecccCCcceecccch
Q 023871           83 KYEEYEVEIEQ----PYGLKFAKGR----DG-----GTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        83 ~~~~y~V~l~K----PLGl~f~e~~----dG-----gv~V~~v~~ggnA~k-~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      ..+.++|+|.|    ++|+.+....    .|     .++|..|.+++.|++ +| |++||+|+++...   .+... .+.
T Consensus         8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~---~v~~~-~~~   82 (114)
T 1uew_A            8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQ---SIINM-PHA   82 (114)
T ss_dssp             CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTB---CTTTS-CHH
T ss_pred             cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCE---ECCCC-CHH
Confidence            34667888865    5899997542    22     569999999999999 77 9999999998753   33221 145


Q ss_pred             hHHHHhhcccCceEEEEeecC
Q 023871          149 RTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~  169 (276)
                      .+...|+....++.|.+.|.-
T Consensus        83 ~~~~~l~~~g~~v~l~v~r~~  103 (114)
T 1uew_A           83 DIVKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHHHHHTTTEEEEEECCCS
T ss_pred             HHHHHHHcCCCeEEEEEEeCC
Confidence            666677765677899998853

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.08  E-value=8.1e-06  Score=62.11  Aligned_cols=70  Identities=20%  Similarity=0.447  Sum_probs=52.0

Q ss_pred             cceeEEeee--------------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-
Q 023871           94 PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-  158 (276)
Q Consensus        94 PLGl~f~e~--------------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~-  158 (276)
                      +||+.+.-+              .++|++|..|.|++.|+++| |++||+|+.+...   .+-.. .+..+..+++... 
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~~g   94 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW---DMTMV-THDQARKRLTKRSE   94 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTC-CHHHHHHHHTCTTC
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCC
Confidence            489888732              24589999999999999999 9999999998642   33211 2446677777544 


Q ss_pred             CceEEEEeec
Q 023871          159 GPLLMKMQKR  168 (276)
Q Consensus       159 gpv~L~l~R~  168 (276)
                      .++.|.+.|+
T Consensus        95 ~~v~l~v~R~  104 (104)
T 3sfj_A           95 EVVRLLVTRQ  104 (104)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEcC
Confidence            5789988874

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.08  E-value=8.9e-06  Score=61.06  Aligned_cols=70  Identities=19%  Similarity=0.334  Sum_probs=53.1

Q ss_pred             cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCCC
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~~  171 (276)
                      ++|+.+.    |++||..|.+||.|+++|.+++||+|+.+...   .+ ......++...|+...+.+.|++.+....
T Consensus        14 ~~G~~~~----~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           14 EYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGT---VT-ENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             CCCEEEE----EEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CCCEEEe----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            5677663    48999999999999999999999999998753   22 11244567788888888999998886543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.07  E-value=6e-06  Score=71.68  Aligned_cols=84  Identities=13%  Similarity=-0.047  Sum_probs=63.3

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCChh---hHHHHH
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRT-GKYEVAREKFESVLGSKPTPE---ESSVAS  255 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~-grYeEAI~~Ye~AL~i~P~~~---e~a~A~  255 (276)
                      -+..|++++++..     |+++-++..+       +..+.+-|..+... |+|++|+..|++||++.|+..   ....++
T Consensus        87 ~~~~g~~~~A~~~-----~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           87 FKSGGNSVNAVDS-----LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHTTCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            3456677776544     4445444433       34456888888885 999999999999999988542   225679


Q ss_pred             HHHhHHHHhcCChhHHHhhh
Q 023871          256 YNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       256 YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|++.+|.++|++++|+..+
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~  181 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIY  181 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.07  E-value=7.7e-06  Score=70.87  Aligned_cols=84  Identities=12%  Similarity=0.018  Sum_probs=67.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     ..++... ...++..|..+++.|+|++|+..|++|++++|++.   .+|++++.||
T Consensus        72 ~~~~~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~  143 (365)
T 4eqf_A           72 GLKRLKEGDLPVTILFMEA-----AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL---KALMALAVSY  143 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHH-----HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHH
Confidence            4445577888888665554     3333322 34567999999999999999999999999999985   6899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      ..+|++++|+..+
T Consensus       144 ~~~g~~~~A~~~~  156 (365)
T 4eqf_A          144 TNTSHQQDACEAL  156 (365)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HccccHHHHHHHH
Confidence            9999999999876

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.07  E-value=1.5e-05  Score=62.71  Aligned_cols=86  Identities=24%  Similarity=0.430  Sum_probs=62.7

Q ss_pred             ccccceEEEEecC----------cceeEEeeeCC-------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCccee
Q 023871           81 EEKYEEYEVEIEQ----------PYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWP  143 (276)
Q Consensus        81 ~~~~~~y~V~l~K----------PLGl~f~e~~d-------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~  143 (276)
                      ..+....+|+|.|          +||+.+..+.+       .++||..|.+++.|+++|.|++||+|+.+...   .+- 
T Consensus         8 ~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~---~v~-   83 (117)
T 1ujd_A            8 HYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI---PLT-   83 (117)
T ss_dssp             CCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTE---ECT-
T ss_pred             CCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EcC-
Confidence            3444555666665          46888876533       17999999999999999999999999998743   221 


Q ss_pred             cccchhHHHHhhcccCceEEEEeecCC
Q 023871          144 AAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       144 a~~~g~~~~air~r~gpv~L~l~R~~~  170 (276)
                      ...+-++...|+....++.|.+.|...
T Consensus        84 ~~~~~~~~~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           84 SKTYEEVQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             TCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred             CCCHHHHHHHHhcCCCEEEEEEEECCc
Confidence            112345677788767889999998543

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.07  E-value=1.1e-05  Score=59.81  Aligned_cols=66  Identities=26%  Similarity=0.407  Sum_probs=51.7

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEEeec
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      +++|+.+.    ++++|..|.+++.|+++|.|++||+|+.+...      +..  .+..+..+|+...+++.|.+.|.
T Consensus        15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~v~l~v~r~   82 (92)
T 3cyy_A           15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGT------VTENMSLTDAKTLIERSKGKLKMVVQRD   82 (92)
T ss_dssp             SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTE------ECTTCCHHHHHHHHHTTTTEEEEEEEC-
T ss_pred             CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence            36787775    68999999999999999989999999998742      233  45566677776667889999884

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.06  E-value=1.3e-05  Score=67.39  Aligned_cols=87  Identities=13%  Similarity=-0.053  Sum_probs=63.4

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      -...|++++++..++...-...........-+...|..+++.|+|++|+..|+++++++|++.   .+|++++.||.++|
T Consensus       244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcC
Confidence            345677777766655511111000111112245678899999999999999999999999885   58999999999999


Q ss_pred             ChhHHHhhhC
Q 023871          267 QVPLLLALIE  276 (276)
Q Consensus       267 q~~eAI~aLE  276 (276)
                      ++++|+..++
T Consensus       321 ~~~~A~~~~~  330 (359)
T 3ieg_A          321 MYDEAIQDYE  330 (359)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999998763

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.05  E-value=7.5e-06  Score=66.09  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc--CceEEEEe
Q 023871           94 PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQ  166 (276)
Q Consensus        94 PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~--gpv~L~l~  166 (276)
                      +||+.+..+.     +.++||..|.++|.|+++|.|++||+|+.+-..   .+ .-..+..+...|+...  ..|.|++.
T Consensus        49 ~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~l~~~~~g~~v~l~v~  124 (131)
T 1wfg_A           49 MLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGR---LL-QGATFEEVYNIILESKPEPQVELVVS  124 (131)
T ss_dssp             TTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTSSSSEEEEEEE
T ss_pred             CCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence            4899986542     228999999999999999999999999998743   11 1112356677777542  77899998


Q ss_pred             ec
Q 023871          167 KR  168 (276)
Q Consensus       167 R~  168 (276)
                      |.
T Consensus       125 R~  126 (131)
T 1wfg_A          125 RS  126 (131)
T ss_dssp             EE
T ss_pred             cC
Confidence            85

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.05  E-value=1.8e-05  Score=61.07  Aligned_cols=77  Identities=19%  Similarity=0.369  Sum_probs=56.7

Q ss_pred             eEEEEec----CcceeEEeeeCC--------------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871           86 EYEVEIE----QPYGLKFAKGRD--------------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY  147 (276)
Q Consensus        86 ~y~V~l~----KPLGl~f~e~~d--------------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~  147 (276)
                      ...|+|.    .++|+.+..+.+              .|++|..|.+++.|+++| |++||+|+.+...      +...+
T Consensus         8 ~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~------~v~~~   80 (109)
T 1q3o_A            8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ------NVVKV   80 (109)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTC
T ss_pred             cEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCC
Confidence            3456665    368899877643              179999999999999999 9999999998753      22233


Q ss_pred             --hhHHHHhhcccCceEEEEeecC
Q 023871          148 --GRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       148 --g~~~~air~r~gpv~L~l~R~~  169 (276)
                        ..+...|+.....+.|.+.|..
T Consensus        81 ~~~~~~~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           81 GHRQVVNMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             CHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHhCCCEEEEEEEECC
Confidence              5566667655567888888754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.05  E-value=2.5e-06  Score=68.14  Aligned_cols=57  Identities=18%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..+..|..+...|+|++|+..|++||+++|++.   .+|++++.||..+|++++|+..++
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~~~~~g~~~~A~~~~~   64 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---DVKLAKADCLLETKQFELAQELLA   64 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            356788888999999999999999999999885   589999999999999999988764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.04  E-value=7e-06  Score=71.12  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++++..     |+++.++... ..-+...|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.++|+
T Consensus       225 ~~g~~~~A~~~-----~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          225 LSGEFNRAIDA-----FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI---RSRYNLGISCINLGA  296 (365)
T ss_dssp             HHTCHHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHCCC
Confidence            34555555333     3344333332 34467889999999999999999999999999985   689999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+..+
T Consensus       297 ~~~A~~~~  304 (365)
T 4eqf_A          297 YREAVSNF  304 (365)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.04  E-value=6.4e-06  Score=71.97  Aligned_cols=87  Identities=9%  Similarity=0.014  Sum_probs=52.9

Q ss_pred             hcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhHHH
Q 023871          188 RNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCY  262 (276)
Q Consensus       188 r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~AcCy  262 (276)
                      +..|++++++..++.  ..|.+..........+.+-|..+.. |+|++|+..|++||++.|+..   ....+++|++.+|
T Consensus        87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  165 (307)
T 2ifu_A           87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL  165 (307)
T ss_dssp             HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            356777777555554  2222211112223334566666666 888888888888887765432   2256777888888


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|+..+
T Consensus       166 ~~~g~~~~A~~~~  178 (307)
T 2ifu_A          166 VRQQKFDEAAASL  178 (307)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            8888888877665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.04  E-value=5.3e-06  Score=62.83  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh----hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~----~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++++.-|..+|+.|+|+.|+.+|+.||...+++    .....++++.|-||.++|+++.|+..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~   69 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4678999999999999999999999999653221    123578999999999999999999865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.04  E-value=1.4e-05  Score=62.97  Aligned_cols=83  Identities=12%  Similarity=0.002  Sum_probs=64.9

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHH-HHHcCCH--HHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQ-LYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVAC  260 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGna-Lfk~grY--eEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac  260 (276)
                      ..-...|++++++..     |+++.++... ..-++..|.. ++..|+|  ++|+..|++++.++|++.   .+++|+|.
T Consensus        52 ~~~~~~~~~~~A~~~-----~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~  123 (177)
T 2e2e_A           52 EYYLWQNDYSNSLLA-----YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI---TALMLLAS  123 (177)
T ss_dssp             HHHHHTTCHHHHHHH-----HHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH---HHHHHHHH
Confidence            444467777777544     4444444432 3446788988 5789999  999999999999999985   58999999


Q ss_pred             HHHhcCChhHHHhhh
Q 023871          261 CYSKLNQVPLLLALI  275 (276)
Q Consensus       261 CyaKLgq~~eAI~aL  275 (276)
                      ||..+|++++|+..+
T Consensus       124 ~~~~~g~~~~A~~~~  138 (177)
T 2e2e_A          124 DAFMQANYAQAIELW  138 (177)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHcccHHHHHHHH
Confidence            999999999999876

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.04  E-value=1.8e-05  Score=66.53  Aligned_cols=84  Identities=14%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             ceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ..++|++.|    .||+.+.. .+.++||..|.+||.|+++|.|++||+|+++...   .|-.. .+-.+...++...++
T Consensus       113 ~~~~v~l~~~~~~~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~---~v~~~-~~~~~~~~l~~~~~~  187 (206)
T 3r0h_A          113 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVCYALFKGANGK  187 (206)
T ss_dssp             EEEEEEEECCTTCCCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTE---ECTTC-CHHHHHHHHHTCCSE
T ss_pred             cEEEEEEecCCCCccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCe
Confidence            456677643    57888875 3468999999999999999999999999998753   22111 234566777877789


Q ss_pred             eEEEEeecCCCcc
Q 023871          161 LLMKMQKRYGKME  173 (276)
Q Consensus       161 v~L~l~R~~~~~~  173 (276)
                      +.|.+.|+.....
T Consensus       188 v~L~V~R~~~~~~  200 (206)
T 3r0h_A          188 VSMEVTRPKPTLR  200 (206)
T ss_dssp             EEEEEEEECCCCC
T ss_pred             EEEEEEeCCCCCC
Confidence            9999999776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.04  E-value=1.9e-05  Score=62.08  Aligned_cols=91  Identities=14%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCChh-hHHHHHHHH
Q 023871          185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGS---KPTPE-ESSVASYNV  258 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i---~P~~~-e~a~A~YN~  258 (276)
                      ......|++++++..+++  ..+++.........-+...|..+...|+|++|+..|++|+++   .|++. ....+++|+
T Consensus        34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  113 (203)
T 3gw4_A           34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV  113 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence            445578889888776665  222222222233445678899999999999999999999977   55333 447789999


Q ss_pred             hHHHHhcCChhHHHhhh
Q 023871          259 ACCYSKLNQVPLLLALI  275 (276)
Q Consensus       259 AcCyaKLgq~~eAI~aL  275 (276)
                      +.+|..+|++++|+..+
T Consensus       114 g~~~~~~g~~~~A~~~~  130 (203)
T 3gw4_A          114 ATVALHFGDLAGARQEY  130 (203)
T ss_dssp             HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            99999999999998765

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.04  E-value=1.5e-05  Score=60.13  Aligned_cols=76  Identities=12%  Similarity=0.232  Sum_probs=55.8

Q ss_pred             ceEEEEecC----cceeEEee-------eCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chh
Q 023871           85 EEYEVEIEQ----PYGLKFAK-------GRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGR  149 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e-------~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~  149 (276)
                      ...+|+|.|    ++|+.+..       +.+  .+++|..|.+++.|+++| |++||+|+.+...      +...  +..
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~   76 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGL------NVEGIRHRE   76 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTE------ECTTCCHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHH
Confidence            346777765    67888874       222  389999999999999999 9999999998743      2223  456


Q ss_pred             HHHHhhcccCceEEEEee
Q 023871          150 TMYTIRQRVGPLLMKMQK  167 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R  167 (276)
                      +...|+...+++.|++.+
T Consensus        77 ~~~~l~~~~~~v~l~v~~   94 (96)
T 2ego_A           77 IVDIIKASGNVLRLETLY   94 (96)
T ss_dssp             HHHHHHHTTTEEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEEE
Confidence            666777666788888866

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.03  E-value=9.9e-06  Score=62.34  Aligned_cols=82  Identities=22%  Similarity=0.341  Sum_probs=61.0

Q ss_pred             eEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           86 EYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      ...|+|.|    ++|+.+.-+.+  .+++|..|.++|.|++++.|++||+|+.+...   .+-. ..+..+...|+...+
T Consensus        10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~---~v~~-~~~~~~~~~l~~~~~   85 (103)
T 2dc2_A           10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV---NLRD-TKHKEAVTILSQQRG   85 (103)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTE---ESTT-SCHHHHHHHHHHCCS
T ss_pred             cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCC
Confidence            35677754    68899886633  38999999999999997449999999998743   3311 245567778887778


Q ss_pred             ceEEEEeecCCC
Q 023871          160 PLLMKMQKRYGK  171 (276)
Q Consensus       160 pv~L~l~R~~~~  171 (276)
                      .+.|++.|.+..
T Consensus        86 ~v~l~v~~~~~~   97 (103)
T 2dc2_A           86 EIEFEVVYVALE   97 (103)
T ss_dssp             EEEEEEEECC--
T ss_pred             cEEEEEEecCCc
Confidence            999999997764

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.03  E-value=1.2e-05  Score=62.24  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=57.5

Q ss_pred             cCcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871           92 EQPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        92 ~KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~  164 (276)
                      ..++|+.+.-+.       +++++|..|.++|.|+++|.|++||+|+.+...   .+- -.....++..++...+++.|+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV---ALE-EVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECS-SCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHhCCCCeEEEE
Confidence            357898887653       348999999999999999999999999998753   221 123345667778777789999


Q ss_pred             EeecCC
Q 023871          165 MQKRYG  170 (276)
Q Consensus       165 l~R~~~  170 (276)
                      +.|.-.
T Consensus        88 v~R~~~   93 (106)
T 4amh_A           88 VAKPGS   93 (106)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            999654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.03  E-value=1.2e-05  Score=57.40  Aligned_cols=57  Identities=25%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++..|..++..|+|++|+..|++++...|++.   .++++++.||..+|++++|+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~   66 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAYYKQGDYDEAIEYY   66 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---HHHHHHHHHHHHhCCHHHHHHHH
Confidence            4567889999999999999999999999999875   58999999999999999999865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.02  E-value=9.7e-06  Score=72.30  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.++.++..|+.+++.|+|++|+..|+++|..+|+.    .+|++++.||.++|++++|+..++
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP----VFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccH----HHHHhHHHHHHHHhhHHHHHHHHH
Confidence            456678899999999999999999999999999963    689999999999999999998763

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.02  E-value=1e-05  Score=63.38  Aligned_cols=81  Identities=19%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccc-cCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~-G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      +...|+|.|    ++|+.+..+.+  .+++|..|.++|.|+++ |.|++||+|+.+-..   .|= ...+-++...|+..
T Consensus        15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~---~v~-~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DIA-EHTHDQVVLFIKAS   90 (119)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTB---CTT-SSCHHHHHHHHHHH
T ss_pred             CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhc
Confidence            457788887    68999987643  37999999999999999 349999999998743   221 11344566666654


Q ss_pred             c----CceEEEEeecC
Q 023871          158 V----GPLLMKMQKRY  169 (276)
Q Consensus       158 ~----gpv~L~l~R~~  169 (276)
                      .    .++.|.+.|..
T Consensus        91 ~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           91 CERHSGELMLLVRPNA  106 (119)
T ss_dssp             HHCCSSCEEEEEECCC
T ss_pred             cccCCCEEEEEEEccc
Confidence            2    48999998853

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.02  E-value=1.5e-05  Score=60.59  Aligned_cols=56  Identities=21%  Similarity=0.388  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      -++..|..++..|+|++|+..|++++...|++.   .++++++.||.++|++++|+..+
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG---KVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            346777888888888888888888888888774   57888888999999988888765

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.01  E-value=9.2e-06  Score=60.27  Aligned_cols=69  Identities=16%  Similarity=0.331  Sum_probs=49.8

Q ss_pred             cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR  168 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~  168 (276)
                      .+|+.+... .++++|..|.|++.|+++| |++||+|+.+-..   .+. ...+..+..+++.  ...++.|.+.|.
T Consensus        18 ~lG~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           18 DFGFTIKWD-IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNT---KFS-YNDSKEWEEAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECC-TTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccEEEEec-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---Ecc-CCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence            488888754 5689999999999999999 9999999998643   330 0233344445552  256789998874

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.01  E-value=7.8e-06  Score=63.31  Aligned_cols=81  Identities=20%  Similarity=0.384  Sum_probs=60.6

Q ss_pred             EEEEec----CcceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           87 YEVEIE----QPYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        87 y~V~l~----KPLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      .+|+|.    .+||+.+..+.+           .+++|..|.+++.|+++|.|++||+|+.+...   .+-.. .+..++
T Consensus        11 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~-~~~~~~   86 (111)
T 1uju_A           11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQ---SLLGL-THGEAV   86 (111)
T ss_dssp             SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSC---BCTTS-CHHHHH
T ss_pred             EEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHH
Confidence            445554    468999986542           38999999999999999999999999997743   22211 455677


Q ss_pred             HHhhcccCceEEEEeecCCC
Q 023871          152 YTIRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~~~~  171 (276)
                      .+|+....++.|.+.|.+-.
T Consensus        87 ~~l~~~g~~v~l~v~r~~~~  106 (111)
T 1uju_A           87 QLLRSVGDTLTVLVCDGFES  106 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCCC
Confidence            77877567889999987643

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.00  E-value=3.4e-05  Score=57.06  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=52.6

Q ss_pred             ceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-c
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-V  158 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~  158 (276)
                      +.++|+|.|   .+|+.+....+ ++++|..| +++.|+ +| |++||+|+++...   .+-.. .+..+...|+. . .
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~---~v~~~-~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKK---NVQAL-THNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTE---ECTTS-CHHHHHHHHHTSCTT
T ss_pred             cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCE---EcCCC-CHHHHHHHHHhCCCC
Confidence            457788866   57888887644 58999887 899888 77 9999999998753   22111 13456666763 2 4


Q ss_pred             CceEEEEeec
Q 023871          159 GPLLMKMQKR  168 (276)
Q Consensus       159 gpv~L~l~R~  168 (276)
                      .++.|.+.|.
T Consensus        76 ~~v~l~v~R~   85 (88)
T 3bpu_A           76 SEVTLLVQRQ   85 (88)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            5789998874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.00  E-value=8e-06  Score=70.37  Aligned_cols=88  Identities=13%  Similarity=-0.022  Sum_probs=62.8

Q ss_pred             hcCCCcchhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---cCCCChhhH-HHHHHHHhHH
Q 023871          188 RNSGVISNRVREIQMQN--YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL---GSKPTPEES-SVASYNVACC  261 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~n--Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL---~i~P~~~e~-a~A~YN~AcC  261 (276)
                      ...|++++++..++..-  +.+.........-+..-|..++..|+|++|+..|++||   ...|++... ..+++|++.|
T Consensus       126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 2qfc_A          126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence            35667777766655421  11111111123345688999999999999999999999   556766544 3789999999


Q ss_pred             HHhcCChhHHHhhh
Q 023871          262 YSKLNQVPLLLALI  275 (276)
Q Consensus       262 yaKLgq~~eAI~aL  275 (276)
                      |.++|++++|+..+
T Consensus       206 y~~~~~y~~Al~~~  219 (293)
T 2qfc_A          206 LYLDSRYEESLYQV  219 (293)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHH
Confidence            99999999999865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.00  E-value=1.4e-05  Score=68.50  Aligned_cols=83  Identities=14%  Similarity=0.031  Sum_probs=62.7

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     ..++... ..-+...|..+.+.|+|++|+..|++++.++|++.   .+++|++.||.
T Consensus       225 ~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~  296 (368)
T 1fch_A          225 VLFNLSGEYDKAVDCFTA-----ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---RSRYNLGISCI  296 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH-----HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHH
Confidence            344466777777554443     3333322 34467888889999999999999999999999875   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus       297 ~~g~~~~A~~~~  308 (368)
T 1fch_A          297 NLGAHREAVEHF  308 (368)
T ss_dssp             HHTCHHHHHHHH
T ss_pred             HCCCHHHHHHHH
Confidence            999999998875

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=97.99  E-value=1.6e-05  Score=59.79  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=55.0

Q ss_pred             CcceeEEeee--CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCceEEEEe
Q 023871           93 QPYGLKFAKG--RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPLLMKMQ  166 (276)
Q Consensus        93 KPLGl~f~e~--~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gpv~L~l~  166 (276)
                      .++|+.+...  .++  +++|..|.+++.|+++| |++||+|+.+...      +..+  +..+...|+....++.|.+.
T Consensus        14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~g~~v~l~v~   86 (96)
T 2v90_A           14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGE------SVEGLGHEETVSRIQGQGSCVSLTVV   86 (96)
T ss_dssp             TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE------ECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred             CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            4688888763  222  89999999999999999 9999999998753      2223  45667777765678899999


Q ss_pred             ecCCC
Q 023871          167 KRYGK  171 (276)
Q Consensus       167 R~~~~  171 (276)
                      |.-..
T Consensus        87 r~~~~   91 (96)
T 2v90_A           87 DPEAD   91 (96)
T ss_dssp             CCCTT
T ss_pred             CCCCc
Confidence            86443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.99  E-value=1e-05  Score=70.93  Aligned_cols=56  Identities=16%  Similarity=0.081  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++..|..+++.|+|++|+..|++|+.++|++.   .+|+|++.||.++|++++|+..+
T Consensus        69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~  124 (388)
T 1w3b_A           69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAY  124 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHSCSSHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            356777777788888888888888888777764   35666666666666666666543

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.99  E-value=1.1e-05  Score=63.81  Aligned_cols=83  Identities=18%  Similarity=0.299  Sum_probs=61.9

Q ss_pred             ccceEEEEec----CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhh
Q 023871           83 KYEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIR  155 (276)
Q Consensus        83 ~~~~y~V~l~----KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air  155 (276)
                      ..+.++|+|.    ..+|+.+....+ ++++|..|.+++.|+++|.|++||+|+++...      +..+  +..+...|+
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~   79 (127)
T 1b8q_A            6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLR   79 (127)
T ss_dssp             CCCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTE------ECSSSCHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHH
Confidence            3355777774    368888887644 59999999999999999966999999998742      2333  556677777


Q ss_pred             ccc-CceEEEEeecCCC
Q 023871          156 QRV-GPLLMKMQKRYGK  171 (276)
Q Consensus       156 ~r~-gpv~L~l~R~~~~  171 (276)
                      ... .++.|.+.|.-..
T Consensus        80 ~~~g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           80 GIASETHVVLILRGPEG   96 (127)
T ss_dssp             SCCSSCEEEEEECCCCS
T ss_pred             hCCCCeEEEEEEeCCce
Confidence            543 5889999986543

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=97.99  E-value=1.5e-05  Score=58.78  Aligned_cols=77  Identities=23%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             EEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           87 YEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      ++|+|.|    ++|+.+..+.  +.+++|..|.|++.|++++.+++||+|+.+...   .+-. ..+.++...++...++
T Consensus         4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~~~~   79 (87)
T 4e34_A            4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV---NLRD-TKHKEAVTILSQQRGE   79 (87)
T ss_dssp             EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTE---ECTT-CCHHHHHHHHHHCCSE
T ss_pred             EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCe
Confidence            5666665    6888887653  237999999999999995339999999998742   3311 1334566677765667


Q ss_pred             eEEEEee
Q 023871          161 LLMKMQK  167 (276)
Q Consensus       161 v~L~l~R  167 (276)
                      +.|++++
T Consensus        80 v~l~v~~   86 (87)
T 4e34_A           80 IEFEVVY   86 (87)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888764

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=97.99  E-value=7.5e-06  Score=61.16  Aligned_cols=78  Identities=18%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ..|+|.|   ++|+.+.... ..+++|..|.|++.|+++| |++||+|+.+...   .+- ...+..+...|+....++.
T Consensus         5 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGV---NVL-DEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             EEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTE---ECT-TSCHHHHHHHHTTSCSEEE
T ss_pred             EEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCEEE
Confidence            4566665   4788886643 3589999999999999999 9999999998743   221 1145567777776667889


Q ss_pred             EEEeecC
Q 023871          163 MKMQKRY  169 (276)
Q Consensus       163 L~l~R~~  169 (276)
                      |.+.|.-
T Consensus        80 l~v~r~~   86 (91)
T 2vsp_A           80 LLVCGKK   86 (91)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9998853

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.98  E-value=5.7e-06  Score=71.28  Aligned_cols=90  Identities=10%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             HhhcCCCcchhHHHHHH--HHHhhH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHh
Q 023871          186 AERNSGVISNRVREIQM--QNYMKK-KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVA  259 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~--~nYkk~-Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~A  259 (276)
                      .-...|++++|+..++.  ..+++. ........-.++-|..+++.|+|++|+..|++||++.++..   ..+.+|+|++
T Consensus       164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  243 (293)
T 3u3w_A          164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG  243 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            34467777777666555  112211 11112223457999999999999999999999998876542   2378999999


Q ss_pred             HHHHhcCC-hhHHHhhh
Q 023871          260 CCYSKLNQ-VPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq-~~eAI~aL  275 (276)
                      .||.++|+ +++|++.+
T Consensus       244 ~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          244 ECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHTTCCHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHH
Confidence            99999995 69998765

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=97.97  E-value=2.8e-05  Score=65.36  Aligned_cols=83  Identities=12%  Similarity=0.204  Sum_probs=60.6

Q ss_pred             ccceEEEEecC---cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHH
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYT  153 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~a  153 (276)
                      +-++++|+|.|   +||+.+..+.+    .++||..|.|++-|+++|.|++||+|+.+...   .+  |... .-.++.+
T Consensus        16 ~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~~~~-~~~~~~~   91 (206)
T 3r0h_A           16 PNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGT---PIHVGSMT-TLKVHQL   91 (206)
T ss_dssp             TTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECCGGGSC-HHHHHHH
T ss_pred             CCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCE---EcCCCccC-HHHHHHH
Confidence            34667788855   89999976543    37999999999999999999999999998743   22  2232 2344556


Q ss_pred             hhcccCc-eEEEEeecC
Q 023871          154 IRQRVGP-LLMKMQKRY  169 (276)
Q Consensus       154 ir~r~gp-v~L~l~R~~  169 (276)
                      ++...+. +.|.+.|.-
T Consensus        92 ~~~~~~~~v~l~v~R~~  108 (206)
T 3r0h_A           92 FHTTYEKAVTLTVFRAD  108 (206)
T ss_dssp             HHSCCSSEEEEEEECCS
T ss_pred             HHhcCCCceEEEEEecc
Confidence            6665555 888888753

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=97.97  E-value=2.6e-05  Score=60.70  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=57.7

Q ss_pred             ceEEEEec----CcceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           85 EEYEVEIE----QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        85 ~~y~V~l~----KPLGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      ..|.+.|.    +.+|+.+.-. ...+++|..|.+++.|+++| |++||+|+.+...   .+-. ..+..+...|+....
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~g~   87 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGV---FVDK-EEHAQVVELVRKSGN   87 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSS---BCSS-SCHHHHHHHHHHTCS
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence            33555554    4678877654 34599999999999999999 9999999998743   3322 224556667765567


Q ss_pred             ceEEEEeec
Q 023871          160 PLLMKMQKR  168 (276)
Q Consensus       160 pv~L~l~R~  168 (276)
                      ++.|.+.|.
T Consensus        88 ~v~l~v~R~   96 (114)
T 2edz_A           88 SVTLLVLDG   96 (114)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEEEC
Confidence            889999883

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.97  E-value=9.8e-06  Score=61.01  Aligned_cols=75  Identities=23%  Similarity=0.502  Sum_probs=57.2

Q ss_pred             EEEEe--cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCc
Q 023871           87 YEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l--~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gp  160 (276)
                      +.|++  ..++|+.+..+.+  .+++|..|.+++.|+++| |++||+|+.+-..      +...+  ..+...|+....+
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   80 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQ------SAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTCCSS
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCc
Confidence            45555  4568888877644  389999999999999999 9999999998653      22333  5566777765588


Q ss_pred             eEEEEeec
Q 023871          161 LLMKMQKR  168 (276)
Q Consensus       161 v~L~l~R~  168 (276)
                      +.|.+.|.
T Consensus        81 v~l~v~R~   88 (94)
T 1vb7_A           81 LRLQLDRS   88 (94)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            99999985

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.97  E-value=2.1e-05  Score=56.27  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=60.6

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      -...|++++++..++.     ..++... ..-++..|..++..|+|++|+..|++++...|++.   .++++++.||.++
T Consensus        45 ~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~  116 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQK-----ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHH-----HHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHH
Confidence            3355666666555443     2222211 23356778888999999999999999999999875   5899999999999


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++|+..+
T Consensus       117 ~~~~~A~~~~  126 (136)
T 2fo7_A          117 GDYDEAIEYY  126 (136)
T ss_dssp             TCHHHHHHHH
T ss_pred             ccHHHHHHHH
Confidence            9999998875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.97  E-value=1.2e-05  Score=67.15  Aligned_cols=56  Identities=13%  Similarity=0.002  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      -+...|..+++.|+|++|+..|+++++++|++.   .+|++++.||.++|++++|+..+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA---STYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch---HHHHHHHHHHHHhccHHHHHHHH
Confidence            456888899999999999999999999999985   68999999999999999999876

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=97.96  E-value=2.6e-05  Score=61.45  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=54.1

Q ss_pred             cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871           94 PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus        94 PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .+|+.+..+.+.  +++|..|.+++.|+++|.|++||+|+++...   .+ ....+..+...|+...+.+.|.+.+..
T Consensus        37 ~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~---~v-~~~~~~~~~~~l~~~~~~v~l~v~~~~  110 (114)
T 2gzv_A           37 LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR---SI-KGKTKVEVAKMIQEVKGEVTIHYNKLQ  110 (114)
T ss_dssp             CCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             cEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEEEEecc
Confidence            389999876543  7999999999999999999999999998742   33 013445666777765677888887643

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=97.96  E-value=1.5e-05  Score=67.64  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=59.5

Q ss_pred             ceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~  156 (276)
                      +..+|+|.|    ++|+.+..+.  ++++||..|.|||.|+++| +++||+|+.+...      +..+  +..++..|+.
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~------~v~~~~~~~~~~~l~~  156 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGY------SISSCTHEEVINLIRT  156 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE------ECTTCCHHHHHHHHTS
T ss_pred             ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHcC
Confidence            446778765    5888887553  3489999999999999999 9999999998742      2223  4567778888


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                       .+++.|++.|.
T Consensus       157 -~~~v~l~v~r~  167 (192)
T 3k1r_A          157 -EKTVSIKVRHI  167 (192)
T ss_dssp             -SSEEEEEEEEC
T ss_pred             -CCeEEEEEEEC
Confidence             78899999884

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.96  E-value=2.5e-05  Score=59.31  Aligned_cols=84  Identities=12%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     ..++... ..-++..|..++..|+|++|+..|++++.+.|++.   .++++++.||
T Consensus        49 ~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~  120 (186)
T 3as5_A           49 GIAYVKTGAVDRGTELLER-----SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF---NVRFRLGVAL  120 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH-----HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH---HHHHHHHHHH
Confidence            3455578888888655544     3333222 33456888999999999999999999999999875   6899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      .++|++++|+..+
T Consensus       121 ~~~~~~~~A~~~~  133 (186)
T 3as5_A          121 DNLGRFDEAIDSF  133 (186)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCcHHHHHHHH
Confidence            9999999999876

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=97.96  E-value=1.5e-05  Score=62.38  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=60.6

Q ss_pred             ccccceEEEEecC----cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           81 EEKYEEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        81 ~~~~~~y~V~l~K----PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      +...+.+.|.|.|    ++|+.+..+.+   .+++|..|.|++.|+++|.|++||+|+.+-..   .|- ...+-.++..
T Consensus        11 ~~~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~-~~~~~~~~~~   86 (119)
T 1x6d_A           11 KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK---SLK-GTTHHDALAI   86 (119)
T ss_dssp             SSCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTE---ECS-SCCHHHHHHH
T ss_pred             CCCCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHH
Confidence            3344567777766    68999977643   48999999999999999999999999997642   221 1134566677


Q ss_pred             hhcccCce-EEEEeecC
Q 023871          154 IRQRVGPL-LMKMQKRY  169 (276)
Q Consensus       154 ir~r~gpv-~L~l~R~~  169 (276)
                      |+...+.+ .|.+.|..
T Consensus        87 l~~~~~~~~~l~v~R~~  103 (119)
T 1x6d_A           87 LRQAREPRQAVIVTRKL  103 (119)
T ss_dssp             HHHTTSSSEEEEEEECC
T ss_pred             HHhCCCCeEEEEEEcCC
Confidence            77555555 46676643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.95  E-value=3.3e-05  Score=63.97  Aligned_cols=92  Identities=14%  Similarity=0.074  Sum_probs=69.7

Q ss_pred             HHHhhcCCCcchhHHHHHHH--HHhhHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHH
Q 023871          184 IRAERNSGVISNRVREIQMQ--NYMKKK--EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVA  254 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~--nYkk~K--elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A  254 (276)
                      ...-...|++++++..++..  .+.+..  .-.....-+...|..++..|+|++|+..|++|+.+.     ++.+....+
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            34555889999997776662  222211  122333456788999999999999999999999874     555556789


Q ss_pred             HHHHhHHHHhcCChhHHHhhh
Q 023871          255 SYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++|++.||..+|++++|+..+
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~  134 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLC  134 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999876

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=97.95  E-value=2e-05  Score=59.48  Aligned_cols=74  Identities=18%  Similarity=0.416  Sum_probs=54.1

Q ss_pred             EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871           87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp  160 (276)
                      ..|+|.|   .+|+.+.... .++++|..|.+++.|+++| |++||+|+.+...      +...  +..+...|+...+.
T Consensus        11 ~~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             EEEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTTTE
T ss_pred             EEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCc
Confidence            3455554   4788887654 3599999999999999999 9999999998753      2333  55667777765554


Q ss_pred             e-EEEEee
Q 023871          161 L-LMKMQK  167 (276)
Q Consensus       161 v-~L~l~R  167 (276)
                      + .|.+.|
T Consensus        84 ~~~l~v~R   91 (98)
T 2jxo_A           84 TKLLVVDR   91 (98)
T ss_dssp             EEEEECCH
T ss_pred             EEEEEEEC
Confidence            4 577766

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=9.5e-06  Score=62.07  Aligned_cols=80  Identities=14%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      ..|+|.|   ++|+.+.... +.+++|..|.+++.|+++| |++||+|+.+...   .+ ....+..+...++...+++.
T Consensus        10 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A           10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGE---NV-EDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             EEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTE---EC-TTCCHHHHHHHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEE
Confidence            4566665   5788886543 4599999999999999999 9999999998642   22 11123455566665567889


Q ss_pred             EEEeecCCC
Q 023871          163 MKMQKRYGK  171 (276)
Q Consensus       163 L~l~R~~~~  171 (276)
                      |.+.|+...
T Consensus        85 l~v~r~~~~   93 (106)
T 2eei_A           85 FLLVDKETD   93 (106)
T ss_dssp             EEECCTTTS
T ss_pred             EEEEcCchh
Confidence            999887654

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.95  E-value=3.2e-05  Score=61.39  Aligned_cols=80  Identities=19%  Similarity=0.393  Sum_probs=57.4

Q ss_pred             EEEEec--CcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~--KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      +.|++.  .++|+.+....+  .+++|..|.+++.|+++| |++||+|+.+...   .+-.... -.++..++. ..++.
T Consensus        24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~---~v~~~~~-~~~~~~~~~-~~~v~   97 (128)
T 1uf1_A           24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGR---SFLNILH-DEAVRLLKS-SRHLI   97 (128)
T ss_dssp             EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTE---ECSSCCH-HHHHHHHTT-CSEEE
T ss_pred             EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCCCCH-HHHHHHHhc-CCeEE
Confidence            444444  579999877543  389999999999999999 9999999998753   3322222 345666665 46899


Q ss_pred             EEEeecCCCc
Q 023871          163 MKMQKRYGKM  172 (276)
Q Consensus       163 L~l~R~~~~~  172 (276)
                      |.+.|.--..
T Consensus        98 l~v~R~g~~~  107 (128)
T 1uf1_A           98 LTVKDVGRLP  107 (128)
T ss_dssp             EEEECCSCCS
T ss_pred             EEEEECCccc
Confidence            9998854433

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.95  E-value=1.1e-05  Score=61.76  Aligned_cols=71  Identities=25%  Similarity=0.384  Sum_probs=52.6

Q ss_pred             CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           93 QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        93 KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .++|+.+.-..+ ++++|..|.|++.|+++| +++||+|+.+...   .+-.. ..-.+...|+....++.|.+.|.
T Consensus        13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~g~~v~l~v~r~   84 (106)
T 3ngh_A           13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGV---FVDKE-EHAQVVELVRKSGNSVTLLVLDG   84 (106)
T ss_dssp             CCCCCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTE---ECTTS-CHHHHHHHHHHTTTEEEEEEECH
T ss_pred             CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCEEEEEEEEC
Confidence            367887776544 489999999999999999 9999999998742   22111 12356667775567889999884

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.95  E-value=3.2e-05  Score=53.59  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=57.5

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     +.++... ..-++..|..+++.|+|++|+..|+++++++|++.   .+++|++.+|.
T Consensus        17 ~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~   88 (91)
T 1na3_A           17 NAYYKQGDYDEAIEYYQK-----ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHH-----HHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHH
Confidence            344577888888665554     3333322 34567899999999999999999999999999985   58999999998


Q ss_pred             hcC
Q 023871          264 KLN  266 (276)
Q Consensus       264 KLg  266 (276)
                      ++|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.94  E-value=2.5e-05  Score=55.82  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=61.9

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ...|++++++..++..     .+... ....++..|..++..|+|++|+..|++++.+.|++.   .++++++.||..+|
T Consensus        12 ~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~   83 (136)
T 2fo7_A           12 YKQGDYDEAIEYYQKA-----LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHTCHHHHHHHHHHH-----HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTT
T ss_pred             HHcCcHHHHHHHHHHH-----HHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---HHHHHHHHHHHHhc
Confidence            3567777776665542     22211 123356778888999999999999999999999875   58999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|+..+
T Consensus        84 ~~~~A~~~~   92 (136)
T 2fo7_A           84 DYDEAIEYY   92 (136)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999876

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.94  E-value=2.9e-05  Score=63.97  Aligned_cols=82  Identities=23%  Similarity=0.430  Sum_probs=58.3

Q ss_pred             cceEEEEec---CcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        84 ~~~y~V~l~---KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      ++..+|+|.   .+||+.+.-+.       +.++||..|.|++-|+++|.|++||+|+++...   .+..... -..+.+
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~~~-~~~~~~   79 (196)
T 3gsl_A            4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV---DVREVTH-SAAVEA   79 (196)
T ss_dssp             EEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTTCCH-HHHHHH
T ss_pred             cEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCCCCH-HHHHHH
Confidence            355666666   58999998764       359999999999999999999999999998753   2222111 133445


Q ss_pred             hhcccCceEEEEeecC
Q 023871          154 IRQRVGPLLMKMQKRY  169 (276)
Q Consensus       154 ir~r~gpv~L~l~R~~  169 (276)
                      ++.-..++.|.+.|..
T Consensus        80 ~~~~g~~v~l~v~r~~   95 (196)
T 3gsl_A           80 LKEAGSIVRLYVMRRK   95 (196)
T ss_dssp             HHTSCSEEEEEEEEEC
T ss_pred             HHhCCCcEEEEEEecC
Confidence            5554566788877754

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.93  E-value=1.1e-05  Score=61.29  Aligned_cols=78  Identities=21%  Similarity=0.430  Sum_probs=55.6

Q ss_pred             ceEEEEecC-----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           85 EEYEVEIEQ-----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~K-----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      +..+|+|.|     .+|+.+....+  .+++|..|.+++.|+++| |++||+|+.+...   .+-.... -.++..++. 
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~-~~~~~~~~~-   81 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK---SLARVTH-AEAVKALKG-   81 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTE---ECSSCCH-HHHHHHSSS-
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCcCH-HHHHHhhcC-
Confidence            345566655     68999987643  489999999999999999 9999999998753   2222222 234444443 


Q ss_pred             cCceEEEEeec
Q 023871          158 VGPLLMKMQKR  168 (276)
Q Consensus       158 ~gpv~L~l~R~  168 (276)
                      ..++.|++.|.
T Consensus        82 ~~~v~l~v~R~   92 (101)
T 1uez_A           82 SKKLVLSVYSA   92 (101)
T ss_dssp             SSSCCEEECCC
T ss_pred             CCeEEEEEEEC
Confidence            45789999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.93  E-value=7.6e-06  Score=67.33  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHH
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYS  263 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCya  263 (276)
                      .-...|++++++..+     +++.++... .+.++..|..++..|+|++|+..|+++++ .|++... ..+|++++.||.
T Consensus        12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence            334778888885544     444444433 24578999999999999999999999999 5555444 778999999999


Q ss_pred             hcCChhHHHhhhC
Q 023871          264 KLNQVPLLLALIE  276 (276)
Q Consensus       264 KLgq~~eAI~aLE  276 (276)
                      .+|++++|+..++
T Consensus        86 ~~~~~~~A~~~~~   98 (272)
T 3u4t_A           86 KKGQDSLAIQQYQ   98 (272)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcccHHHHHHHHH
Confidence            9999999998763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.92  E-value=4.3e-05  Score=63.21  Aligned_cols=86  Identities=9%  Similarity=-0.011  Sum_probs=67.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhh
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQ---------KERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEE  250 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kel---------kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e  250 (276)
                      ..-...|++++++..++.     +.++         .....-+...|..++..|+|++|+..|++++.+.     ++...
T Consensus        77 ~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLND-----ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD  151 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHH-----HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            444577888888666554     3333         2233456788999999999999999999999875     55566


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...+++|+|.||..+|++++|++.+
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6789999999999999999999876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.92  E-value=3.2e-05  Score=60.91  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          220 REGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       220 ~eGnaLfk~-grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ..|..++.. |+|++|+..|++++. .|.++....++++++.||.++|++++|+..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  135 (225)
T 2vq2_A           81 NYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAY  135 (225)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444 555555555555554 222211123444444444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.92  E-value=3.3e-05  Score=60.86  Aligned_cols=83  Identities=13%  Similarity=0.024  Sum_probs=66.0

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++.     ..++... ..-++..|..++..|+|++|+..|++++.++|++.   .++++++.||.
T Consensus        16 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~   87 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIED-----ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA---EINNNYGWFLC   87 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHH-----HHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHH
Confidence            344477888888666554     3333222 34466889999999999999999999999999885   58999999999


Q ss_pred             hc-CChhHHHhhh
Q 023871          264 KL-NQVPLLLALI  275 (276)
Q Consensus       264 KL-gq~~eAI~aL  275 (276)
                      .+ |++++|+..+
T Consensus        88 ~~~~~~~~A~~~~  100 (225)
T 2vq2_A           88 GRLNRPAESMAYF  100 (225)
T ss_dssp             TTTCCHHHHHHHH
T ss_pred             HhcCcHHHHHHHH
Confidence            99 9999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.91  E-value=4e-05  Score=62.46  Aligned_cols=55  Identities=16%  Similarity=0.086  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~--i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..++..|+|++|+..|++++.  ..|++   ..++++++.||.++|++++|+..+
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~  164 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYF  164 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34555566666666666666666666  34433   345666666666666666666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.91  E-value=9e-06  Score=64.01  Aligned_cols=79  Identities=15%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH-HHhcC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC-yaKLg  266 (276)
                      ..|++++++..++.     +.++.. ..+.++..|..++..|+|++|+..|++|+.++|++.   .++++++.| |.+.|
T Consensus        22 ~~~~~~~A~~~~~~-----al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           22 SQQNPEAQLQALQD-----KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---ELYAALATVLYYQAS   93 (177)
T ss_dssp             -----CCCCHHHHH-----HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---HHHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcC
Confidence            46777888665554     222222 134577899999999999999999999999999985   589999999 88999


Q ss_pred             Ch--hHHHhhh
Q 023871          267 QV--PLLLALI  275 (276)
Q Consensus       267 q~--~eAI~aL  275 (276)
                      ++  ++|+..+
T Consensus        94 ~~~~~~A~~~~  104 (177)
T 2e2e_A           94 QHMTAQTRAMI  104 (177)
T ss_dssp             TCCCHHHHHHH
T ss_pred             CcchHHHHHHH
Confidence            98  9998876

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=97.91  E-value=2.9e-05  Score=59.46  Aligned_cols=79  Identities=19%  Similarity=0.327  Sum_probs=57.1

Q ss_pred             ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccC-cccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGM-FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~-i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      ....|+|.|    ++|+.+.-+.+  .+++|..|.|++.|+++|. |++||+|+.+...   .+-.. ..-++...|+..
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~---~v~~~-~~~~~~~~i~~~   92 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DIAEH-THDQVVLFIKAS   92 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTE---ECTTC-CHHHHHHHHHCG
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCE---ECCCC-CHHHHHHHHHhc
Confidence            446777765    77888876543  3799999999999999995 9999999998743   22111 223456666654


Q ss_pred             c----CceEEEEee
Q 023871          158 V----GPLLMKMQK  167 (276)
Q Consensus       158 ~----gpv~L~l~R  167 (276)
                      .    ++|.|++.|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence            3    389999887

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.91  E-value=1.4e-05  Score=75.44  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=25.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      +..|..++..|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|++.
T Consensus        61 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~  113 (568)
T 2vsy_A           61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHP---GIALWLGHALEDAGQAEAAAAA  113 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Confidence            3444444455555555555555555444442   2444444444444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.91  E-value=1.3e-05  Score=75.52  Aligned_cols=78  Identities=8%  Similarity=-0.072  Sum_probs=54.0

Q ss_pred             CCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871          191 GVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP  269 (276)
Q Consensus       191 G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~  269 (276)
                      |++++++..     |+++.++... .+.++..|..++..|+|++|+..|++||+++|++.   .+|+|+|.||.++|+++
T Consensus         3 g~~~~A~~~-----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~   74 (568)
T 2vsy_A            3 ADGPRELLQ-----LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---EAVARLGRVRWTQQRHA   74 (568)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---HHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHH
Confidence            556666433     4444444443 34567999999999999999999999999999985   68999999999999999


Q ss_pred             HHHhhhC
Q 023871          270 LLLALIE  276 (276)
Q Consensus       270 eAI~aLE  276 (276)
                      +|++.++
T Consensus        75 ~A~~~~~   81 (568)
T 2vsy_A           75 EAAVLLQ   81 (568)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.91  E-value=3.1e-05  Score=64.59  Aligned_cols=82  Identities=17%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      .-...|++++++..++.     ..++... ..-+...|..++..|+|++|+..|++++.++|++.   .+|++++.||.+
T Consensus       181 ~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~  252 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRR-----AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV---RVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHH
Confidence            33466777777555544     3232222 23467889999999999999999999999999885   589999999999


Q ss_pred             cCChhHHHhhh
Q 023871          265 LNQVPLLLALI  275 (276)
Q Consensus       265 Lgq~~eAI~aL  275 (276)
                      +|++++|+..+
T Consensus       253 ~g~~~~A~~~~  263 (327)
T 3cv0_A          253 MSQYDLAAKQL  263 (327)
T ss_dssp             TTCHHHHHHHH
T ss_pred             hccHHHHHHHH
Confidence            99999999876

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.91  E-value=2.3e-05  Score=67.07  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=68.2

Q ss_pred             HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH
Q 023871          183 IIRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (276)
Q Consensus       183 ~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC  261 (276)
                      ..+.-...|++++++..++.     ..++... ..-++..|..++..|+|++|+..|+++++++|++.   .++++++.|
T Consensus        70 ~~~~~~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~  141 (368)
T 1fch_A           70 EGLRRLQEGDLPNAVLLFEA-----AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ---TALMALAVS  141 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-----HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Confidence            34555678899998766655     3222222 34467889999999999999999999999999985   589999999


Q ss_pred             HHhcCChhHHHhhh
Q 023871          262 YSKLNQVPLLLALI  275 (276)
Q Consensus       262 yaKLgq~~eAI~aL  275 (276)
                      |..+|++++|+..+
T Consensus       142 ~~~~g~~~~A~~~~  155 (368)
T 1fch_A          142 FTNESLQRQACEIL  155 (368)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHH
Confidence            99999999999876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.91  E-value=1.2e-05  Score=70.21  Aligned_cols=81  Identities=11%  Similarity=-0.052  Sum_probs=62.2

Q ss_pred             CCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhH
Q 023871          191 GVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVAC  260 (276)
Q Consensus       191 G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~Ac  260 (276)
                      |++++++..+     +++.++...       ..-+.+-|..+.++|+|++|+..|++||.+.|+..   ....++.|++.
T Consensus       129 g~~~~A~~~~-----~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~  203 (307)
T 2ifu_A          129 LDLSKAVHLY-----QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL  203 (307)
T ss_dssp             TCHHHHHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-----HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            7777775554     444444432       33456889999999999999999999998876543   23568999999


Q ss_pred             HHHhcCChhHHHhhhC
Q 023871          261 CYSKLNQVPLLLALIE  276 (276)
Q Consensus       261 CyaKLgq~~eAI~aLE  276 (276)
                      ||..+|++++|+..++
T Consensus       204 ~~~~~g~~~~A~~~~~  219 (307)
T 2ifu_A          204 VQLHRADYVAAQKCVR  219 (307)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999998763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.90  E-value=5.6e-06  Score=62.00  Aligned_cols=50  Identities=12%  Similarity=0.110  Sum_probs=40.2

Q ss_pred             HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|+|++|+..|++||++.++++....+|+|++.||.++|++++|+..++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   51 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA   51 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            46899999999999999976666567899999999999999999998763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.90  E-value=2.2e-05  Score=68.45  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +..+..|..+...|+|++|+..|++||+++|++.   .++++.|.+|..+|++++|+..|+
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~~~~~g~~~~A~~~l~  175 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---EIGLLLAETLIALNRSEDAEAVLX  175 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---hHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4567889999999999999999999999999996   589999999999999999998774

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=97.89  E-value=3e-05  Score=58.01  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             EEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871           88 EVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        88 ~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~  164 (276)
                      .|+|.|.   +|+.+..  +.+++|..|.+++.|+++| |++||+|+.+...   .+-. ..+..+...|+...+.+.|.
T Consensus         6 ~v~l~~~~~g~G~~l~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~~~v~l~   78 (91)
T 2f5y_A            6 QITIPRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PVEH-WKCVELAHEIRSCPSEIILL   78 (91)
T ss_dssp             EEEEECBTTBTSEEEEC--SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCSSEEEEE
T ss_pred             EEEEEeCCCCccEEEec--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCeEEEE
Confidence            4555544   6666643  4579999999999999999 9999999998753   1111 12345566677656678999


Q ss_pred             EeecCC
Q 023871          165 MQKRYG  170 (276)
Q Consensus       165 l~R~~~  170 (276)
                      +.|...
T Consensus        79 v~R~~~   84 (91)
T 2f5y_A           79 VWRMVP   84 (91)
T ss_dssp             EEECC-
T ss_pred             EEeCCC
Confidence            998644

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=1.7e-05  Score=59.70  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             eEEEEec--CcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l~--KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      .+.|+|.  .|+|+.+..+.  +.+++|..|.|++.|+++| |++||+|+++...   .+-.. .+-.+...++....++
T Consensus         9 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~v   83 (94)
T 2eeg_A            9 PHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGE---STELM-THLEAQNRIKGCHDHL   83 (94)
T ss_dssp             CEEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTE---ETTTC-CHHHHHHHHHTCCSCE
T ss_pred             eEEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCeE
Confidence            3455554  56677776554  3589999999999999999 9999999998743   22111 2334555666545678


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|.+.|.
T Consensus        84 ~l~v~R~   90 (94)
T 2eeg_A           84 TLSVSSG   90 (94)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999884

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.89  E-value=6.4e-05  Score=57.27  Aligned_cols=79  Identities=11%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             ccceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--  157 (276)
                      ..+.+.|+|.|   .+|+.+.... .+++|..|.++  |+++| |++||+|+.+...   .+-. ..+..+...|+..  
T Consensus         8 ~~~~~~v~l~~~~~g~G~~i~~~~-~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~~   79 (96)
T 1ujv_A            8 QAELMTLTIVKGAQGFGFTIADSP-TGQRVKQILDI--QGCPG-LCEGDLIVEINQQ---NVQN-LSHTEVVDILKDCPI   79 (96)
T ss_dssp             CCCCEEEEEECCSSSSSEEEEEET-TEEEEEEESCG--GGSTT-CCSSCEEEEETTE---ECSS-CCHHHHHHHHHHSCT
T ss_pred             CceEEEEEEEeCCCceeEEEEcCC-CCEEEEEEecc--cccCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence            34668888876   4788886543 36999999994  77787 9999999998742   2211 1235667778863  


Q ss_pred             cCceEEEEeecC
Q 023871          158 VGPLLMKMQKRY  169 (276)
Q Consensus       158 ~gpv~L~l~R~~  169 (276)
                      ..++.|.+.|..
T Consensus        80 g~~v~l~v~R~g   91 (96)
T 1ujv_A           80 GSETSLIIHRGS   91 (96)
T ss_dssp             TSEEEEEEECCS
T ss_pred             CCEEEEEEEECC
Confidence            468999999853

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.89  E-value=1.7e-05  Score=70.15  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=62.2

Q ss_pred             hhcCCCcchhHHHHHH--HHHhhHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhH
Q 023871          187 ERNSGVISNRVREIQM--QNYMKKKE-QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVAC  260 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~--~nYkk~Ke-lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN~Ac  260 (276)
                      -...|++++++..++.  ..+++... ......-...-|..+...|+|++|+..|++||++.|+   ......+++|++.
T Consensus       153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  232 (383)
T 3ulq_A          153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL  232 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3356777777555544  11222111 1122334568889999999999999999999977553   3344778999999


Q ss_pred             HHHhcCChhHHHhhh
Q 023871          261 CYSKLNQVPLLLALI  275 (276)
Q Consensus       261 CyaKLgq~~eAI~aL  275 (276)
                      ||..+|++++|+..+
T Consensus       233 ~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          233 CKNSQSQYEDAIPYF  247 (383)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHH
Confidence            999999999999875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.89  E-value=4.2e-05  Score=63.83  Aligned_cols=56  Identities=16%  Similarity=0.034  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++..|..++..| +|++|+..|++++.++|++.   .+|++++.||..+|++++|+..+
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~  148 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---PAWIAYGHSFAVESEHDQAMAAY  148 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHccCHHHHHHHH
Confidence            3567788888888 88888888888888888875   46788888888888888887664

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.89  E-value=3e-05  Score=69.98  Aligned_cols=64  Identities=13%  Similarity=0.283  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          209 KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       209 Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+....++.++..|+.+++.|+|++|+..|+++|.++|++.   .+|+|++.||.++|++++|+..+
T Consensus        19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~   82 (537)
T 3fp2_A           19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---VFYSNISACYISTGDLEKVIEFT   82 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            33445667789999999999999999999999999999985   68999999999999999999876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.87  E-value=3e-05  Score=62.28  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +..|..+++.|+|++|+..|++++...|++.   .++++++.||.++|++++|+..+
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHA---DAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHccCHHHHHHHH
Confidence            3444444555555555555555555555442   34555555555555555555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.87  E-value=2.8e-05  Score=64.10  Aligned_cols=87  Identities=16%  Similarity=0.024  Sum_probs=46.3

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--hH-HHHHHHHhHHHHhc
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ES-SVASYNVACCYSKL  265 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--e~-a~A~YN~AcCyaKL  265 (276)
                      ..|++++++..++..--...........-+...|..++..|+|++|+..|++|+.+.+...  .. ..++++++.||..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            5566666644444321111111111123345666666666666666666666665544332  22 55566677777777


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++|+..+
T Consensus        97 g~~~~A~~~~  106 (338)
T 3ro2_A           97 GNFDEAIVCC  106 (338)
T ss_dssp             TCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            7777666654

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.86  E-value=5.6e-05  Score=58.59  Aligned_cols=73  Identities=16%  Similarity=0.411  Sum_probs=53.3

Q ss_pred             cCcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871           92 EQPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus        92 ~KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      ..++|+.+....  +.+++|..|.+++.|+++| |++||+|+.+...   .+-... +-.++..++. .+++.|.+.|.-
T Consensus        26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~---~v~~~~-~~~~~~~~~~-~~~v~l~v~r~~   99 (114)
T 1x5n_A           26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV---DFSNLD-HKEAVNVLKS-SRSLTISIVAAA   99 (114)
T ss_dssp             SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTE---ETTSCC-TTHHHHHHHH-CSSEEEEECSST
T ss_pred             CCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHhc-CCeEEEEEEcCC
Confidence            456889998653  3489999999999999999 9999999998753   222221 2335556665 368999998853


Q ss_pred             C
Q 023871          170 G  170 (276)
Q Consensus       170 ~  170 (276)
                      |
T Consensus       100 g  100 (114)
T 1x5n_A          100 G  100 (114)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.86  E-value=4.6e-05  Score=61.14  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..+++.|+|++|+..|++++.+.|++.   .++++++.+|.++|++++|+..+
T Consensus       128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDT---EARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            34555555666666666666666666666553   35666666666666666666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.86  E-value=8.5e-06  Score=70.18  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHH
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER--------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVA  254 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq--------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A  254 (276)
                      .-...|++++|+..++.     +.++.+.        ..-.++.|..+++.|+|++|+..|++||++.++..   ....+
T Consensus       164 ~y~~~~~~~~A~~~~~k-----al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          164 IYAENGYLKKGIDLFEQ-----ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHTTCHHHHHHHHHH-----HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHcCCHHHHHHHHHH-----HHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            33467777777555544     3322111        13457999999999999999999999998764321   23678


Q ss_pred             HHHHhHHHHhcCChhHH-Hh
Q 023871          255 SYNVACCYSKLNQVPLL-LA  273 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eA-I~  273 (276)
                      ++|++.||.++|++++| ..
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~  258 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999 44

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.86  E-value=3.7e-05  Score=68.00  Aligned_cols=90  Identities=12%  Similarity=0.012  Sum_probs=63.4

Q ss_pred             HhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--h-hhHHHHHHHHhH
Q 023871          186 AERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--P-EESSVASYNVAC  260 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~-~e~a~A~YN~Ac  260 (276)
                      .-...|++++|+..++.  ..+++...-........+-|..++..|+|++|+..|++||++.+.  + +....+++|+|.
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            33466788888665554  112222111222235678999999999999999999999984211  1 223689999999


Q ss_pred             HHHhcCChhHHHhhh
Q 023871          261 CYSKLNQVPLLLALI  275 (276)
Q Consensus       261 CyaKLgq~~eAI~aL  275 (276)
                      ||.++|++++|+..+
T Consensus       273 ~~~~~g~~~~A~~~~  287 (383)
T 3ulq_A          273 IHYKLGKIDKAHEYH  287 (383)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHH
Confidence            999999999999876

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.85  E-value=5.1e-05  Score=59.21  Aligned_cols=80  Identities=20%  Similarity=0.382  Sum_probs=56.0

Q ss_pred             ceEEEEecC--cceeEEeeeC---CC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-
Q 023871           85 EEYEVEIEQ--PYGLKFAKGR---DG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-  157 (276)
Q Consensus        85 ~~y~V~l~K--PLGl~f~e~~---dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-  157 (276)
                      +...|+|.|  ++|+.+.-+.   .+ ++||..|.++|.|+++|.|++||+|+.+-..   .+-. ..+..+...|+.. 
T Consensus        15 ~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~---~~~~-~~~~~~~~~l~~~~   90 (109)
T 1wi4_A           15 AFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE---SMIG-VSFEEAKSIITRAK   90 (109)
T ss_dssp             TEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTS---CCTT-CCHHHHHHHHHHSC
T ss_pred             cEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHccc
Confidence            334555555  6667776532   22 7999999999999999999999999998753   2211 1244666777643 


Q ss_pred             ---cCceEEEEeec
Q 023871          158 ---VGPLLMKMQKR  168 (276)
Q Consensus       158 ---~gpv~L~l~R~  168 (276)
                         ..++.|.+.|.
T Consensus        91 ~r~~~~~~l~v~R~  104 (109)
T 1wi4_A           91 LRSESPWEIAFIRS  104 (109)
T ss_dssp             CSSSSCEEEEEECC
T ss_pred             cCCCceEEEEEEeC
Confidence               46778888884

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.84  E-value=1.2e-05  Score=61.55  Aligned_cols=74  Identities=22%  Similarity=0.314  Sum_probs=57.6

Q ss_pred             EEecCcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCceEEE
Q 023871           89 VEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        89 V~l~KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gpv~L~  164 (276)
                      +.=..++|+.+..+.|.  +++|..|.+++.|+++| |++||+|+.+...      +...  +..+...|+....++.|.
T Consensus        11 ~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~g~~v~l~   83 (103)
T 1v5l_A           11 LPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGF------GTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             EESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTE------ECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             EcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCeEEEE
Confidence            33445789999877543  79999999999999999 9999999998743      2333  566777777667788999


Q ss_pred             EeecC
Q 023871          165 MQKRY  169 (276)
Q Consensus       165 l~R~~  169 (276)
                      +.|.-
T Consensus        84 v~R~g   88 (103)
T 1v5l_A           84 IDRAE   88 (103)
T ss_dssp             ECCCT
T ss_pred             EEECC
Confidence            98854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.83  E-value=5.4e-05  Score=66.28  Aligned_cols=53  Identities=15%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ...|..+++.|+|++|+..|+++++++|++.   .+|+|++.+|.++|++++|++.
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~  293 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFP---DAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Confidence            3445555555555555555555555555543   2344444444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.83  E-value=1.2e-05  Score=79.38  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh------------------------------HH
Q 023871          204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------------------------SS  252 (276)
Q Consensus       204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e------------------------------~a  252 (276)
                      .|.++-++... .+.++..|+.+++.|+|++|+..|++||+++|++.+                              ..
T Consensus       455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~  534 (681)
T 2pzi_A          455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVI  534 (681)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCH
T ss_pred             HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchH
Confidence            34444444433 234678888888889999999999999888887631                              13


Q ss_pred             HHHHHHhHHHHhcCChhHHHhhh
Q 023871          253 VASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       253 ~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+|+|+|.||.++|++++|++.+
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Confidence            45666666666666666666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.83  E-value=3.6e-05  Score=67.36  Aligned_cols=89  Identities=12%  Similarity=0.016  Sum_probs=61.8

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--hhhH-HHHHHHHhHHHH
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEES-SVASYNVACCYS  263 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~~e~-a~A~YN~AcCya  263 (276)
                      -...|++++++..++..--...........-++..|..++..|+|++|+..|++||++...  +... ..++++++.||.
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            3478888888665554322221122222345678888888899999999999999876433  3333 677899999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus       138 ~~g~~~~A~~~~  149 (411)
T 4a1s_A          138 VMGRFDEAAICC  149 (411)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHH
Confidence            999999998765

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=97.82  E-value=2e-05  Score=60.35  Aligned_cols=71  Identities=23%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             EEEEecC----cceeEEeee---------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHH
Q 023871           87 YEVEIEQ----PYGLKFAKG---------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTM  151 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~---------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~  151 (276)
                      .+|+|.|    ++|+.+...         .+.+++|..|.+++.|+++| |++||+|+.+-..      +..  .+.++.
T Consensus        17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~------~v~~~~~~~~~   89 (104)
T 2z17_A           17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGV------STEGFTYKQVV   89 (104)
T ss_dssp             CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTE------ECTTCCHHHHH
T ss_pred             eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------EcCCCCHHHHH
Confidence            4555665    588988762         23599999999999999999 9999999998642      233  455677


Q ss_pred             HHhhcccCceEEE
Q 023871          152 YTIRQRVGPLLMK  164 (276)
Q Consensus       152 ~air~r~gpv~L~  164 (276)
                      ..|+...+++.|.
T Consensus        90 ~~l~~~~~~v~l~  102 (104)
T 2z17_A           90 DLIRSSGNLLTIE  102 (104)
T ss_dssp             HHHHHTTTEEEEE
T ss_pred             HHHHhCCCcEEEE
Confidence            7777666666665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.82  E-value=5.6e-05  Score=63.01  Aligned_cols=84  Identities=12%  Similarity=-0.016  Sum_probs=67.2

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ...-...|++++++..++.     ..+... ....++..|..++..|+|++|+..|+++++++|++.   .++++++.||
T Consensus        28 a~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~   99 (327)
T 3cv0_A           28 GLSMLKLANLAEAALAFEA-----VCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSH   99 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH---HHHHHHHHHH
Confidence            4455578899998766654     222222 234466889999999999999999999999999885   5899999999


Q ss_pred             HhcCChhHHHhhh
Q 023871          263 SKLNQVPLLLALI  275 (276)
Q Consensus       263 aKLgq~~eAI~aL  275 (276)
                      ..+|++++|+..+
T Consensus       100 ~~~~~~~~A~~~~  112 (327)
T 3cv0_A          100 TNEHNANAALASL  112 (327)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            9999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.82  E-value=6.7e-05  Score=71.74  Aligned_cols=88  Identities=8%  Similarity=-0.053  Sum_probs=70.6

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChh
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPE  249 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~  249 (276)
                      ++..++.|+++++     +..|+++.++.++         +....+-|..+..+|+|++|+..|++||++     -|+.+
T Consensus       305 ~~~~~~~g~~~eA-----~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          305 FRRAKHYKSPSEL-----LEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHTTTSCHHHH-----HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHhhhccCHHHH-----HHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            4556678888887     4556666666543         233457788889999999999999999955     58888


Q ss_pred             hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          250 ESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       250 e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.+..++|+|..|..+|++++|+..++
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALK  406 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            889999999999999999999998653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.81  E-value=2.8e-05  Score=66.90  Aligned_cols=58  Identities=16%  Similarity=0.039  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc----CCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLG----SKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~----i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ...-|+.++..|+|++|+..|++||+    ...+......+++|++.||.++|++++|+..+
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~  219 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV  219 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45788889999999999999999994    22344455779999999999999999999865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.81  E-value=4.3e-05  Score=60.87  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+++.++... .+-++..|..+...|+|++|+..|+++|.++|+..+ ..+++|.+.||..+|+.++|+..+
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHH
Confidence            345555555443 345678999999999999999999999999998632 258999999999999999998765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.81  E-value=8.1e-05  Score=68.45  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..-+...|..+++.|+|++|+..|+++++++|++.   .+|++++.||.++|++++|++.++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~  574 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA---NVHTAIALVYLHKKIPGLAITHLH  574 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence            34467888889999999999999999999999885   689999999999999999998763

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=4.8e-05  Score=60.54  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             cccccceEEEEecC------cceeEEeee-CC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           80 QEEKYEEYEVEIEQ------PYGLKFAKG-RD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        80 ~~~~~~~y~V~l~K------PLGl~f~e~-~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      +-.+.+.++|+|.|      ++|+.+... .+  .+++|..|.+++.|+++| |++||+|+.+-..   .+-.. .+..+
T Consensus        10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~---~v~~~-~~~~~   84 (114)
T 2d8i_A           10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR---AADAL-NSSML   84 (114)
T ss_dssp             CSSCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSC---BGGGC-CHHHH
T ss_pred             EeccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE---ECCCc-CHHHH
Confidence            34455678888875      488888753 23  389999999999999999 9999999998743   33221 13345


Q ss_pred             HHHhhcccCceEEEEeecCCC
Q 023871          151 MYTIRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~~~~  171 (276)
                      ...|+.  .++.|.+.|...+
T Consensus        85 ~~~l~~--~~v~l~v~R~p~~  103 (114)
T 2d8i_A           85 KDFLSQ--PSLGLLVRTYPEL  103 (114)
T ss_dssp             HHHHTS--SEEEEEEEECCCS
T ss_pred             HHHHhC--CcEEEEEEECCCC
Confidence            556664  3899999997654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.79  E-value=1.2e-05  Score=79.20  Aligned_cols=58  Identities=14%  Similarity=-0.046  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.++..|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.++|++++|++.++
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~  491 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW---RLVWYRAVAELLTGDYDSATKHFT  491 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567999999999999999999999999999995   689999999999999999998763

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.79  E-value=5.8e-05  Score=62.15  Aligned_cols=81  Identities=26%  Similarity=0.445  Sum_probs=59.6

Q ss_pred             eEEEEec---CcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        86 ~y~V~l~---KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      .++|++.   .++|+.+....       +.++||..|.|+|.|+++|.+++||+|+.+-..   .|= -..+..+...|+
T Consensus       101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~  176 (196)
T 3gsl_A          101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV---GLE-DVMHEDAVAALK  176 (196)
T ss_dssp             EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECS-SCBHHHHHHHHH
T ss_pred             cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCC---cCC-CCCHHHHHHHHH
Confidence            3455553   46888886532       348999999999999999999999999998753   221 112556777788


Q ss_pred             cccCceEEEEeecCC
Q 023871          156 QRVGPLLMKMQKRYG  170 (276)
Q Consensus       156 ~r~gpv~L~l~R~~~  170 (276)
                      ....++.|.+.|.-.
T Consensus       177 ~~~~~v~l~v~R~~~  191 (196)
T 3gsl_A          177 NTYDVVYLKVAKPSN  191 (196)
T ss_dssp             SCCEEEEEEEEEESC
T ss_pred             cCCCeEEEEEeCCCC
Confidence            777889999998643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.79  E-value=3.7e-05  Score=68.25  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=57.4

Q ss_pred             hcCCCcchhHHHHHH--HHHhhHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhHH
Q 023871          188 RNSGVISNRVREIQM--QNYMKKKE-QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVACC  261 (276)
Q Consensus       188 r~~G~i~~al~Eiq~--~nYkk~Ke-lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~AcC  261 (276)
                      ...|+++.++..++.  ..+++... ......-...-|..++..|+|++|+..|++||++.+   +......+++|++.|
T Consensus       152 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  231 (378)
T 3q15_A          152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS  231 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            355666666555544  22222111 112233445788888888999999999999987643   333346788888888


Q ss_pred             HHhcCChhHHHhhh
Q 023871          262 YSKLNQVPLLLALI  275 (276)
Q Consensus       262 yaKLgq~~eAI~aL  275 (276)
                      |..+|++++|+..+
T Consensus       232 y~~~~~~~~A~~~~  245 (378)
T 3q15_A          232 YDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHH
Confidence            88888888888765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.79  E-value=3.6e-05  Score=67.97  Aligned_cols=57  Identities=18%  Similarity=-0.034  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      -+...|..+.+.|+|++|+..|++++.++|++.   .+|++++.||.++|++++|+..++
T Consensus       297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~  353 (450)
T 2y4t_A          297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQDYE  353 (450)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhcCHHHHHHHHH
Confidence            456788899999999999999999999999885   689999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.79  E-value=8.2e-05  Score=60.61  Aligned_cols=55  Identities=18%  Similarity=0.026  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..|..+++.|+|++|+..|++++.+.|++.   .++++++.+|.++|++++|+..+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP---SVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            45667777788888888888888888877764   46788888888888888887765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.78  E-value=3.9e-05  Score=72.01  Aligned_cols=81  Identities=15%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             HhhcCCCc-chhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          186 AERNSGVI-SNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       186 ~~r~~G~i-~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      .-...|++ ++++.     .|+++.++... .+.++..|..+++.|+|++|+..|++||+++|+.    .+|+|++.||.
T Consensus       111 ~~~~~g~~~~~A~~-----~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~lg~~~~  181 (474)
T 4abn_A          111 ALNVTPDYSPEAEV-----LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK----VSLQNLSMVLR  181 (474)
T ss_dssp             HHTSSSSCCHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH----HHHHHHHHHHT
T ss_pred             HHHhccccHHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH----HHHHHHHHHHH
Confidence            33467777 77744     44455555444 4557789999999999999999999999999993    68999999999


Q ss_pred             hc---------CChhHHHhhh
Q 023871          264 KL---------NQVPLLLALI  275 (276)
Q Consensus       264 KL---------gq~~eAI~aL  275 (276)
                      .+         |++++|+..+
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~  202 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQA  202 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHH
T ss_pred             HhccCChhhhhhhHHHHHHHH
Confidence            99         9999998875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.78  E-value=3.5e-05  Score=60.55  Aligned_cols=90  Identities=11%  Similarity=-0.011  Sum_probs=63.7

Q ss_pred             HhhcCCCcchhHHHHHH--HHHhhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHh
Q 023871          186 AERNSGVISNRVREIQM--QNYMKKK-EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVA  259 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~--~nYkk~K-elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~A  259 (276)
                      .-...|++++++..+++  ..+++.. .......-....|..++..|+|++|+..|++++.+.+   +......+++|++
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            34467888888666555  1122111 0112233456889999999999999999999996643   2233367789999


Q ss_pred             HHHHhcCChhHHHhhh
Q 023871          260 CCYSKLNQVPLLLALI  275 (276)
Q Consensus       260 cCyaKLgq~~eAI~aL  275 (276)
                      .||..+|++++|+..+
T Consensus       155 ~~~~~~g~~~~A~~~~  170 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHW  170 (203)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHH
Confidence            9999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.78  E-value=2.4e-05  Score=73.45  Aligned_cols=71  Identities=7%  Similarity=-0.168  Sum_probs=46.9

Q ss_pred             HhhHHHHHHH-HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          205 YMKKKEQKER-REQDLREGLQLYRT--------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       205 Ykk~Kelkkq-ae~~~~eGnaLfk~--------grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+++.++... ...|+..|..++..        |+|++|+..|++||.++|.......+|+|+|.||.++|++++|++.+
T Consensus       202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444444333 23456777777777        77888888888888887721122357888888888888888887765

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.78  E-value=8.5e-05  Score=58.59  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             EEEEecCcceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc----cC
Q 023871           87 YEVEIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR----VG  159 (276)
Q Consensus        87 y~V~l~KPLGl~f~e~~---dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r----~g  159 (276)
                      +.+.-...+|+.+.-+.   .|.++|..|.++|.|+++|.|++||+|+++...   .+-. ..+.++...|+..    ..
T Consensus        22 ~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~---~v~~-~~~~~~~~~l~~~~~~~g~   97 (118)
T 1v6b_A           22 LRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK---IVTD-YTLAEAEAALQKAWNQGGD   97 (118)
T ss_dssp             EEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSC---BCTT-CBHHHHHHHHHHHHHHTCS
T ss_pred             EEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHHhhhcCCC
Confidence            44444557888887553   357999999999999999559999999998753   2211 1233444555532    56


Q ss_pred             ceEEEEeecCCC
Q 023871          160 PLLMKMQKRYGK  171 (276)
Q Consensus       160 pv~L~l~R~~~~  171 (276)
                      ++.|++.|....
T Consensus        98 ~v~l~v~r~~~~  109 (118)
T 1v6b_A           98 WIDLVVAVCPPK  109 (118)
T ss_dssp             EEEEEEECCCSC
T ss_pred             eEEEEEEeCCcc
Confidence            899999996543

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.77  E-value=5.6e-05  Score=58.48  Aligned_cols=57  Identities=19%  Similarity=0.353  Sum_probs=45.6

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .+|++|..|.+++.|+++| |++||+|+.+...      +..++......++. ..++.|.+.|.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~l~~-~~~v~l~v~R~   90 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQ------MVQNAEDVYEAVRT-QSQLAVQIRRG   90 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHHHH-CSSEEEEEEET
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHhC-CCeEEEEEEEC
Confidence            4699999999999999999 9999999998642      33445556666665 57899999884

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=97.73  E-value=7.8e-05  Score=58.26  Aligned_cols=79  Identities=22%  Similarity=0.342  Sum_probs=53.7

Q ss_pred             cccceEEEEecCc------ceeEEeee-CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           82 EKYEEYEVEIEQP------YGLKFAKG-RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        82 ~~~~~y~V~l~KP------LGl~f~e~-~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      |.++.-.|.|.|+      +|+.+... .+|  +++|.+|.|++.|+++| +++||+|+.+...   .+ ..-.+..+..
T Consensus         3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~---~v-~~~~~~~l~~   77 (94)
T 3kzd_A            3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR---AA-DALNSSMLKD   77 (94)
T ss_dssp             -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EG-GGCCHHHHHH
T ss_pred             cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHH
Confidence            4555666666665      78888774 344  89999999999999999 9999999998753   11 1112345556


Q ss_pred             HhhcccCceEEEEee
Q 023871          153 TIRQRVGPLLMKMQK  167 (276)
Q Consensus       153 air~r~gpv~L~l~R  167 (276)
                      ++++  .++.|.+..
T Consensus        78 ~l~~--~~l~ltV~~   90 (94)
T 3kzd_A           78 FLSQ--PSLGLLVRT   90 (94)
T ss_dssp             HHHS--SEEEEEEEE
T ss_pred             HHhC--CeEEEEEEe
Confidence            6664  446666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.73  E-value=6.1e-05  Score=66.79  Aligned_cols=82  Identities=12%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCChhhHHH
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKE-------RREQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSV  253 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkk-------qae~~~~eGnaLfk~grYeEAI~~Ye~AL~-----i~P~~~e~a~  253 (276)
                      .-...|++++|+..++.     +.++.+       ......+-|..++..|+|++|+..|++||+     .+|..   ..
T Consensus       191 ~y~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~  262 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEA-----ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PK  262 (378)
T ss_dssp             HHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH---HH
T ss_pred             HHHHhCCHHHHHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH---HH
Confidence            34467777777655544     333322       233456889999999999999999999998     45544   57


Q ss_pred             HHHHHhHHHHhcCChhHHHhhh
Q 023871          254 ASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       254 A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +++|+|.||.++|++++|+..+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~  284 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFI  284 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.73  E-value=0.00014  Score=63.97  Aligned_cols=52  Identities=13%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL  272 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI  272 (276)
                      +...|..+.+.|+|++|+..|++||+++|++.   .+++|++.|+..+|++++++
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHP---ETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCHHHH
Confidence            34677777888888888888888888888886   47888888888888887654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.73  E-value=6.1e-05  Score=73.73  Aligned_cols=75  Identities=21%  Similarity=0.365  Sum_probs=57.4

Q ss_pred             EEEec--CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEE
Q 023871           88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLM  163 (276)
Q Consensus        88 ~V~l~--KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L  163 (276)
                      .|.+.  ++|||.+.-++++|+||..|.+||.|+++| |++||+|+.|...   .|- .....+++..|+.  -.++|.|
T Consensus         4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~---~v~-~~t~~e~~~~L~~~~~g~~v~L   78 (468)
T 3shw_A            4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DFT-NIIREEAVLFLLDLPKGEEVTI   78 (468)
T ss_dssp             EEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEETTE---ECT-TCCHHHHHHHHHHSCTTSEEEE
T ss_pred             EEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhcCCCCEEEE
Confidence            35555  489999988888999999999999999999 9999999998753   221 1124456677775  3567888


Q ss_pred             EEee
Q 023871          164 KMQK  167 (276)
Q Consensus       164 ~l~R  167 (276)
                      ++.|
T Consensus        79 ~V~r   82 (468)
T 3shw_A           79 LAQK   82 (468)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8888

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.72  E-value=6.7e-05  Score=68.28  Aligned_cols=85  Identities=18%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             cccceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           82 EKYEEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        82 ~~~~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      ...+...|+|.|    ++|+.+..+.+  .++||..|.+||-|++++.|++||+|+.|-..   .|-. ...-++...|+
T Consensus        74 ~~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~---~v~~-~t~~e~v~~l~  149 (263)
T 1z87_A           74 LLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE---DLSS-ATHDEAVQALK  149 (263)
T ss_dssp             TSCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSC---BCTT-SCHHHHHHHHH
T ss_pred             CCCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-cCHHHHHHHHh
Confidence            344678899987    58899987754  48999999999999995449999999998753   2222 12446777788


Q ss_pred             cccCceEEEEeecCC
Q 023871          156 QRVGPLLMKMQKRYG  170 (276)
Q Consensus       156 ~r~gpv~L~l~R~~~  170 (276)
                      .-.+.|.|++.|...
T Consensus       150 ~~g~~V~L~V~R~~~  164 (263)
T 1z87_A          150 KTGKEVVLEVKYMKE  164 (263)
T ss_dssp             HCCSCCCEEEECCSS
T ss_pred             cCCCeEEEEEEeCcc
Confidence            767789999999644

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.72  E-value=5.7e-05  Score=64.97  Aligned_cols=89  Identities=16%  Similarity=0.014  Sum_probs=61.4

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--hhH-HHHHHHHhHHHH
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EES-SVASYNVACCYS  263 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~e~-a~A~YN~AcCya  263 (276)
                      -...|++++++..++..--...........-+...|..++..|+|++|+..|++|+.+.+..  ... ..++++++.||.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            34788888886665553222211122223456788888888899999999999988765443  333 667888999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus        99 ~~g~~~~A~~~~  110 (406)
T 3sf4_A           99 VLGNFDEAIVCC  110 (406)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            999999888765

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.71  E-value=0.0001  Score=62.06  Aligned_cols=81  Identities=17%  Similarity=0.357  Sum_probs=58.9

Q ss_pred             ceEEEEecC----cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai  154 (276)
                      +.++|+|.|    .+|+.+..+.      +.+++|..|.|++-|+++|.|++||+|+++...   .+-. ..+..+...|
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~l   81 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI---PTED-STFEEANQLL   81 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTB---CSTT-SCHHHHHHHH
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence            567788866    4889998863      348999999999999999999999999998643   2211 1234455666


Q ss_pred             hcc--cCceEEEEeecC
Q 023871          155 RQR--VGPLLMKMQKRY  169 (276)
Q Consensus       155 r~r--~gpv~L~l~R~~  169 (276)
                      +..  ..++.|++.|..
T Consensus        82 ~~~~~g~~v~l~v~R~~   98 (196)
T 1p1d_A           82 RDSSITSKVTLEIEFDV   98 (196)
T ss_dssp             HTCCSSSEEEEEEEECS
T ss_pred             HhCCCCCeEEEEEEecC
Confidence            644  346788887754

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=97.70  E-value=0.00011  Score=58.18  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             EEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEE
Q 023871           88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLM  163 (276)
Q Consensus        88 ~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L  163 (276)
                      .|+|.|   ++|+.+  ..+.+++|..|.|++.|+++| |++||+|+.+-..   .+- ......+...|+...+ ++.|
T Consensus        26 ~v~l~k~~~~~G~~l--~~~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~---~v~-~~~~~dv~~~i~~~~~~~v~l   98 (109)
T 2vsv_A           26 SIRFTAEEGDLGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLV---DCK-WLTLSEVMKLLKSFGEDEIEM   98 (109)
T ss_dssp             EEEECCGGGCCCEEE--ESSSSCEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECT-TCCHHHHHHHHHTTTTSCEEE
T ss_pred             EEEEEeCCCceeEEE--eCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCCeEEE
Confidence            455554   456555  334579999999999999999 9999999998743   111 0133456667775555 4999


Q ss_pred             EEeecCC
Q 023871          164 KMQKRYG  170 (276)
Q Consensus       164 ~l~R~~~  170 (276)
                      ++.|+..
T Consensus        99 ~V~~~~~  105 (109)
T 2vsv_A           99 KVVSLLD  105 (109)
T ss_dssp             EEESCC-
T ss_pred             EEEECCC
Confidence            9988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.69  E-value=6.4e-05  Score=61.91  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=54.9

Q ss_pred             cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHHhHHHH
Q 023871          189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYS  263 (276)
Q Consensus       189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~AcCya  263 (276)
                      ..|++++++..++.  ..+.+..........+...|..++..|+|++|+..|++++.+.|+.   .....+++++|.||.
T Consensus       195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            45666666555544  1111111111122245677888888888888888888888665443   233667888888888


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|+..+
T Consensus       275 ~~g~~~~A~~~~  286 (338)
T 3ro2_A          275 LLQDYEKAIDYH  286 (338)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHH
Confidence            888888887755

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.68  E-value=7e-05  Score=65.53  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=57.6

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNV  258 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~  258 (276)
                      ..|++++++..+++     +.++...       ...+...|..++..|+|++|+..|++|+.+.|+.   .....+++++
T Consensus       235 ~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  309 (411)
T 4a1s_A          235 LLGDFQAAIEHHQE-----RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL  309 (411)
T ss_dssp             HTTCHHHHHHHHHH-----HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56677776555544     3332222       2245678888888999999999999999776643   2236778888


Q ss_pred             hHHHHhcCChhHHHhhh
Q 023871          259 ACCYSKLNQVPLLLALI  275 (276)
Q Consensus       259 AcCyaKLgq~~eAI~aL  275 (276)
                      |.||..+|++++|+..+
T Consensus       310 a~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          310 GNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            88888888888888765

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.67  E-value=7.7e-05  Score=57.75  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=57.6

Q ss_pred             eEEEEecC---cceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc---
Q 023871           86 EYEVEIEQ---PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ---  156 (276)
Q Consensus        86 ~y~V~l~K---PLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~---  156 (276)
                      +..|+|.|   ++|+.+.-+.+.   .+||..|.+++.|+++|.|++||+|+.+-..   .+ ....+.++...|+.   
T Consensus         7 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            7 GTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGL---TL-RGKEHREAARIIAEAFK   82 (103)
T ss_dssp             SEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTE---EC-TTCBHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHHhcc
Confidence            35677776   788999776553   4699999999999999999999999998642   22 01124455666664   


Q ss_pred             --ccCceEEEEeecC
Q 023871          157 --RVGPLLMKMQKRY  169 (276)
Q Consensus       157 --r~gpv~L~l~R~~  169 (276)
                        ...++.|.+.|..
T Consensus        83 ~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           83 TKDRDYIDFLVTEFN   97 (103)
T ss_dssp             CSSCSEEEEEECCCC
T ss_pred             cCCCCeEEEEEEEcc
Confidence              3567888888743

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.67  E-value=0.00015  Score=57.86  Aligned_cols=70  Identities=11%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             cceeEEeeeC-----CCCeEEEEeCC--CCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCceEEE
Q 023871           94 PYGLKFAKGR-----DGGTYIDAIAP--GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        94 PLGl~f~e~~-----dGgv~V~~v~~--ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gpv~L~  164 (276)
                      ++|+.|.-..     ..+++|..|.+  ++.|+++| |++||+|+.+...      +...+  ..+..+|+....++.|.
T Consensus        28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~------~v~~~~~~dl~~~l~~~g~~v~l~  100 (118)
T 2yub_A           28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGT------PVRTLRVEEVEDAIKQTSQTLQLL  100 (118)
T ss_dssp             SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSS------BTTTSCHHHHHHHHHCCSSCEEEE
T ss_pred             CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCE------ECCCcCHHHHHHHHHhCCCEEEEE
Confidence            4677766432     35899999999  99999999 9999999998742      23333  55666677555578999


Q ss_pred             EeecCC
Q 023871          165 MQKRYG  170 (276)
Q Consensus       165 l~R~~~  170 (276)
                      +.|...
T Consensus       101 v~R~g~  106 (118)
T 2yub_A          101 IEHDPV  106 (118)
T ss_dssp             EEECSS
T ss_pred             EEECCE
Confidence            988543

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=97.66  E-value=0.00014  Score=60.57  Aligned_cols=71  Identities=20%  Similarity=0.398  Sum_probs=53.0

Q ss_pred             CcceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           93 QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        93 KPLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      +.||+.+.-+.          +.+++|..|.|++.|++ | |++||+|+.+...   .+-.. ..-.++.+++...+.+.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v~   75 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFINI-EHGQAVSLLKTFQNTVE   75 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTE---ECTTC-CHHHHHHHHHHCCSEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCeEE
Confidence            45788887653          34999999999999999 7 9999999998642   22222 23456667776667899


Q ss_pred             EEEeecC
Q 023871          163 MKMQKRY  169 (276)
Q Consensus       163 L~l~R~~  169 (276)
                      |.+.|..
T Consensus        76 l~v~r~~   82 (195)
T 2qbw_A           76 LIIVREV   82 (195)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999964

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.65  E-value=0.00016  Score=60.86  Aligned_cols=78  Identities=19%  Similarity=0.378  Sum_probs=57.1

Q ss_pred             ceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~  156 (276)
                      ..+.|+|.|    +||+.+..+.  +++++|..|.+++.|+++|.|++||+|+++...      +..++  -.++..++.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~------~v~~~~~~~~~~~~~~   80 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI------NLAKFRHDEIISLLKN   80 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTE------ECTTSCHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHh
Confidence            456777754    7999998763  458999999999999999449999999998753      22233  345555655


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                      -..++.|.+.|.
T Consensus        81 ~g~~v~l~v~R~   92 (200)
T 2qt5_A           81 VGERVVLEVEYE   92 (200)
T ss_dssp             CCSEEEEEEEEE
T ss_pred             CCCeEEEEEecc
Confidence            455788888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.64  E-value=0.0002  Score=62.38  Aligned_cols=83  Identities=11%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------------
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------------  249 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------------  249 (276)
                      ..|++++++..     |+++.++...- +.++..|..+...|++++|+..|++++..+|+..                  
T Consensus       129 ~~g~~~~A~~~-----~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          129 QESNYTDALPL-----LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HTTCHHHHHHH-----HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred             hCCCHHHHHHH-----HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence            56777777444     44444444432 3345667777777777777766666665555421                  


Q ss_pred             -------------hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          250 -------------ESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       250 -------------e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                                   +...+++|.|.+|..+|++++|++.|+
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                         013689999999999999999998763

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.64  E-value=0.00011  Score=69.72  Aligned_cols=73  Identities=22%  Similarity=0.384  Sum_probs=56.0

Q ss_pred             ecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-ccC-ceEEEEeec
Q 023871           91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR  168 (276)
Q Consensus        91 l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~g-pv~L~l~R~  168 (276)
                      -..+||+.+..++++|++|..|.+||.|+++| +++||+|+.+...   .+- ......+...|+. ..| ++.|++.|.
T Consensus        17 k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~---~v~-~~~~~e~~~~l~~~~~g~~v~l~v~r~   91 (391)
T 3tsz_A           17 KGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DFT-NIIREEAVLFLLDLPKGEEVTILAQKK   91 (391)
T ss_dssp             CCSSCCEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEETTE---ECT-TCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred             cCCceeEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhhcCCCeEEEEEeeC
Confidence            33489999988888999999999999999999 9999999998753   221 1135566677774 344 688888774

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.64  E-value=0.00014  Score=61.09  Aligned_cols=78  Identities=21%  Similarity=0.401  Sum_probs=60.2

Q ss_pred             ceEEEEecC---cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHH
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYT  153 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~a  153 (276)
                      ..+.|++.|   ++|+.+..+.      ..+++|..|.+++.|+++|.|++||+|+.+...      +..  .+..+..+
T Consensus       106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~  179 (200)
T 2qt5_A          106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGI------RLLGTTHAEAMSI  179 (200)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECTTCCHHHHHHH
T ss_pred             eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHH
Confidence            446666644   5899887653      348999999999999999999999999998642      334  55667777


Q ss_pred             hhcccCceEEEEeec
Q 023871          154 IRQRVGPLLMKMQKR  168 (276)
Q Consensus       154 ir~r~gpv~L~l~R~  168 (276)
                      |+....++.|.+.|.
T Consensus       180 l~~~~~~v~l~v~R~  194 (200)
T 2qt5_A          180 LKQCGQEATLLIEYD  194 (200)
T ss_dssp             HHTTCSEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEEC
Confidence            777567889999985

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.63  E-value=7.1e-06  Score=77.85  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..|+.+++.|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|++.+
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~   63 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRTECYGYALGDA   63 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            3456778888999999999999999999999985   68999999999999999999875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.62  E-value=0.0002  Score=69.47  Aligned_cols=87  Identities=13%  Similarity=0.060  Sum_probs=70.2

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChh
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPE  249 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~  249 (276)
                      +..-+..|+++++     +..|+++.++.++         +....+-|..+..+|+|++|+..|++||++     -|+.+
T Consensus       316 a~~~~~qg~~~eA-----~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          316 IDKARSEGLYHEV-----VKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHTTTCHHHH-----HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHhCCCHHHH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            4445688999888     4556666665543         333457788888999999999999999965     58888


Q ss_pred             hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          250 ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       250 e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+..++|+|..|..+|++++|+..+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~  416 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMI  416 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            88999999999999999999999865

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=97.62  E-value=0.00019  Score=56.55  Aligned_cols=75  Identities=17%  Similarity=0.403  Sum_probs=55.7

Q ss_pred             EEEEec---CcceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871           87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP  160 (276)
Q Consensus        87 y~V~l~---KPLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp  160 (276)
                      ..|+|.   ..+|+.+.... .++++|..|.+++.|+++| |++||+|+.+...      +..+  +..+..+|+...+.
T Consensus        11 r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~   83 (128)
T 2kjd_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDE   83 (128)
T ss_dssp             EEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTCSE
T ss_pred             EEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCC
Confidence            445555   45888887764 3599999999999999999 9999999998753      3333  55677777765554


Q ss_pred             -eEEEEeec
Q 023871          161 -LLMKMQKR  168 (276)
Q Consensus       161 -v~L~l~R~  168 (276)
                       +.|.+.|.
T Consensus        84 ~~~l~v~R~   92 (128)
T 2kjd_A           84 TKLLVVDRE   92 (128)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEEEeC
Confidence             56888874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.61  E-value=0.00023  Score=61.11  Aligned_cols=83  Identities=11%  Similarity=0.019  Sum_probs=59.2

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHH
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYN  257 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN  257 (276)
                      ...|++++++..++.     +.++..+       ..-+...|..+...|+|++|+..|++|+++.++   ......++++
T Consensus       238 ~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  312 (406)
T 3sf4_A          238 IFLGEFETASEYYKK-----TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS  312 (406)
T ss_dssp             HHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHH-----HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            356666666554444     3333222       334567888888999999999999999977543   3334678999


Q ss_pred             HhHHHHhcCChhHHHhhh
Q 023871          258 VACCYSKLNQVPLLLALI  275 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aL  275 (276)
                      +|.||.++|++++|+..+
T Consensus       313 la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          313 LGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999999998765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.57  E-value=0.00011  Score=64.45  Aligned_cols=47  Identities=11%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|+|++|+..|+++++.+|++.   .+|+|+|.||.++|++++|+..|+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~  224 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTL---LLLNGQAACHMAQGRWEAAEGVLQ  224 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35899999999999999999885   689999999999999999998763

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=97.57  E-value=8.4e-05  Score=56.07  Aligned_cols=71  Identities=13%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             CcceeEEeeeC----CC-----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEE
Q 023871           93 QPYGLKFAKGR----DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (276)
Q Consensus        93 KPLGl~f~e~~----dG-----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L  163 (276)
                      .++|+.+....    ++     +++|..|.+++.|+++| |++||+|+++...   . ........+...|+....++.|
T Consensus        13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~-v~~~~~~~~~~~l~~~g~~v~l   87 (99)
T 3khf_A           13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE---S-VLGLVHMDVVELLLKSGNKISL   87 (99)
T ss_dssp             CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTE---E-CTTCCHHHHHHHHHHSCSEEEE
T ss_pred             CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---E-CCCCCHHHHHHHHhcCCCEEEE
Confidence            45777776542    11     56899999999999999 9999999998642   1 1111444566677755677899


Q ss_pred             EEeec
Q 023871          164 KMQKR  168 (276)
Q Consensus       164 ~l~R~  168 (276)
                      .+.|.
T Consensus        88 ~v~r~   92 (99)
T 3khf_A           88 RTTAL   92 (99)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            98873

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=9.1e-05  Score=56.19  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             ceEEEEecCc-----ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           85 EEYEVEIEQP-----YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        85 ~~y~V~l~KP-----LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      ..++|+|.|.     +|+.+..  +.+++|..|.+++.|+ +| |++||+|+.+...   .+=. ..+-+++..++....
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~---~v~~-~~~~~~~~~~~~~g~   79 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNE---PAED-LSWERAVDILREAED   79 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSC---BSTT-CCHHHHHHHHHHCSS
T ss_pred             ccEEEEEEECCCCCcccEEEec--CCCeEEEEECCCCchh-hC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence            4577888764     5555543  5699999999999995 66 9999999998743   2211 134456667776567


Q ss_pred             ceEEEEeecC
Q 023871          160 PLLMKMQKRY  169 (276)
Q Consensus       160 pv~L~l~R~~  169 (276)
                      ++.|.+.|..
T Consensus        80 ~v~l~v~R~~   89 (96)
T 2edv_A           80 SLSITVVRCT   89 (96)
T ss_dssp             CEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            8999999976

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.53  E-value=0.00022  Score=59.99  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=59.6

Q ss_pred             eEEEEecC----cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhh
Q 023871           86 EYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIR  155 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air  155 (276)
                      .+.|++++    .+|+.+....    ..+++|..|.+++.|+++|.+++||+|+.+...      +..+  +......|+
T Consensus       108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~l~  181 (196)
T 1p1d_A          108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNI------RLDSCSMEDAVQILQ  181 (196)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTE------EGGGCCHHHHHHHHH
T ss_pred             cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHH
Confidence            46777763    5799887642    358999999999999999989999999998642      2333  556666777


Q ss_pred             cccCceEEEEeec
Q 023871          156 QRVGPLLMKMQKR  168 (276)
Q Consensus       156 ~r~gpv~L~l~R~  168 (276)
                      ....++.|.+.|.
T Consensus       182 ~~~~~v~l~v~R~  194 (196)
T 1p1d_A          182 QCEDLVKLKIRKD  194 (196)
T ss_dssp             HCTTCEEEEEECC
T ss_pred             hCCCEEEEEEEeC
Confidence            6678899999884

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.51  E-value=0.00023  Score=72.07  Aligned_cols=83  Identities=23%  Similarity=0.412  Sum_probs=63.1

Q ss_pred             ceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      +...|+|.|   +||+.+..+.+ .+++|..|.+||.|+++|.|++||+|+.|...   .|-. ..+.++...|+...++
T Consensus       307 ~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~---~v~~-~~~~e~~~~l~~~~~~  382 (721)
T 2xkx_A          307 EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRN-ASHEQAAIALKNAGQT  382 (721)
T ss_pred             ceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCE---ECCC-CCHHHHHHHHHhcCCe
Confidence            456677765   48888876544 59999999999999999999999999998753   2211 1245677778877788


Q ss_pred             eEEEEeecCCC
Q 023871          161 LLMKMQKRYGK  171 (276)
Q Consensus       161 v~L~l~R~~~~  171 (276)
                      +.|.+.|....
T Consensus       383 v~L~v~r~~~~  393 (721)
T 2xkx_A          383 VTIIAQYKPEE  393 (721)
T ss_pred             EEEEEEeCchh
Confidence            99999887543

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.50  E-value=0.00011  Score=59.76  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cC
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VG  159 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~g  159 (276)
                      ..++++|.|   -+|+.+.. .+++++|..|.++|.|+++|.|++||+|+++-..   .|- -..+..+...|+. . ..
T Consensus        27 ~~~~~~l~k~~~glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~---~v~-~~s~~d~~~~l~~~~~G~  101 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVGHA---NVL-GYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSS---CCT-TCCHHHHHHHHTSCCSSC
T ss_pred             ceEEEEEecCCceEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EcC-CCCHHHHHHHHhcCCCCC
Confidence            446666654   34555554 3568999999999999999999999999998642   221 1234566777775 3 35


Q ss_pred             ceEEEEeecCCCc
Q 023871          160 PLLMKMQKRYGKM  172 (276)
Q Consensus       160 pv~L~l~R~~~~~  172 (276)
                      +|.|.+.|.|-.+
T Consensus       102 ~v~l~V~R~~~~i  114 (126)
T 1wif_A          102 VLQIKAYRGFLEI  114 (126)
T ss_dssp             EEEEEEESSSSCC
T ss_pred             EEEEEEEECCCcc
Confidence            7899999985443

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.49  E-value=0.00025  Score=58.36  Aligned_cols=72  Identities=22%  Similarity=0.430  Sum_probs=52.5

Q ss_pred             EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh--HHHHhhcccC-
Q 023871           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR--TMYTIRQRVG-  159 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~--~~~air~r~g-  159 (276)
                      .+|+|.|    .||+.+... +++++|..|.|++.|+++| |++||+|+++...      +..++..  ....++...+ 
T Consensus         6 r~v~l~k~~~~~lG~~~~~~-~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~~~~~~~~   77 (166)
T 1w9e_A            6 REVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE------NCAGWSSDKAHKVLKQAFGE   77 (166)
T ss_dssp             EEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHHCCSS
T ss_pred             EEEEEEeCCCCcEeEEEEeC-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCC
Confidence            5677776    689999874 5789999999999999999 9999999998743      2223332  3334444444 


Q ss_pred             ceEEEEe
Q 023871          160 PLLMKMQ  166 (276)
Q Consensus       160 pv~L~l~  166 (276)
                      ++.|++.
T Consensus        78 ~v~l~vr   84 (166)
T 1w9e_A           78 KITMTIR   84 (166)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7788883

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.46  E-value=0.0001  Score=65.94  Aligned_cols=56  Identities=16%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCC------hhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPT------PEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~------~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .-|...+..|+|++||..|++||++.+.      +.....+|+|+|.||..+|++++|+..+
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~  117 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV  117 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4688889999999999999999987432      2233678999999999999999998765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.43  E-value=0.0002  Score=64.03  Aligned_cols=79  Identities=23%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYR--TGKYEVAREKFESVLGSKPTPEESSVASYN  257 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk--~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN  257 (276)
                      ..|+++++     ...|.++.++.++         .+-..+.|..+.+  .++|++|+..|++||+++|++.+   ++++
T Consensus       106 ~~g~~~~A-----~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~---~~~~  177 (472)
T 4g1t_A          106 HMGRLSDV-----QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE---FTSG  177 (472)
T ss_dssp             HTTCHHHH-----HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH---HHHH
T ss_pred             HcCChHHH-----HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence            45555555     2446666666553         2334567877754  46799999999999999999874   5555


Q ss_pred             HhHHHH---hcCChhHHHhhh
Q 023871          258 VACCYS---KLNQVPLLLALI  275 (276)
Q Consensus       258 ~AcCya---KLgq~~eAI~aL  275 (276)
                      .+.++.   ..++.++|++.+
T Consensus       178 ~~~~~~~l~~~~~~~~al~~~  198 (472)
T 4g1t_A          178 LAIASYRLDNWPPSQNAIDPL  198 (472)
T ss_dssp             HHHHHHHHHHSCCCCCTHHHH
T ss_pred             HHHHHHHhcCchHHHHHHHHH
Confidence            555544   445556666543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.43  E-value=0.00027  Score=64.94  Aligned_cols=53  Identities=8%  Similarity=-0.039  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA  273 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~  273 (276)
                      |...|..+.+.|+|++|+..|++++++.|++.   .+|++++.+|.++|++++|++
T Consensus       410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTH---LPYLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS---HHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHcCCHHHHHH
Confidence            34455555555555555555555555555442   344444444444444444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.37  E-value=0.00023  Score=50.69  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER-RE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae-~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      .-...|++++++..++.     ..++... .. -++..|..++..|+|++|+..|++||.++|++.+
T Consensus         9 ~~~~~~~~~~A~~~~~~-----al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            9 ELINQGDIENALQALEE-----FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHTCHHHHHHHHHH-----HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHcCCHHHHHHHHHH-----HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            33456777777655544     3333322 23 5678999999999999999999999999999864

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=97.37  E-value=0.00016  Score=57.71  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh---cccCceEEEEee
Q 023871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR---QRVGPLLMKMQK  167 (276)
Q Consensus        92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air---~r~gpv~L~l~R  167 (276)
                      ....|+.+.. .++++.|.+|.+|+.|+++| +++||+|+++-..   .+ ....+.++...|+   ...+++.|.+.-
T Consensus        27 ~~g~G~~l~~-~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~---~v-~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           27 EEDYGFDIEE-KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINED---LV-FLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             SSSSSEEEEE-ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTE---ES-TTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCcccEEEEc-cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---Ec-CcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            4456777776 46689999999999999999 9999999998642   22 1223444444444   357888887653

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=97.34  E-value=0.0005  Score=52.19  Aligned_cols=73  Identities=11%  Similarity=0.200  Sum_probs=53.6

Q ss_pred             eEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      ...|+|.|    ++|+.+.   +|  +|..|.+|+.|+++| +++||+|+.|-..   .+ .-....++...||...+.|
T Consensus         5 ~r~v~l~k~~~g~~Gf~i~---~g--~I~~v~~gspA~~aG-l~~GD~Il~VNG~---~v-~~~~~~evv~llr~~g~~V   74 (82)
T 1r6j_A            5 PRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEINGQ---NV-IGLKDSQIADILSTSGTVV   74 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEETTE---EC-TTCCHHHHHHHHHHSCSEE
T ss_pred             eEEEEEEECCCCCeEEEEE---CC--EEEEecCCCHHHHcC-CCCCCEEEEECCE---Ec-CCCCHHHHHHHHhcCCCEE
Confidence            36788877    5777764   23  489999999999999 8999999998764   22 1223457788889656678


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      +|++...
T Consensus        75 ~L~v~p~   81 (82)
T 1r6j_A           75 TITIMPA   81 (82)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8887654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.30  E-value=0.0003  Score=53.30  Aligned_cols=64  Identities=22%  Similarity=0.437  Sum_probs=46.1

Q ss_pred             cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R  167 (276)
                      ++|+.+.   .|  +|..|.++|.|+++| |++||+|+.+...   .+- ...+.++...|+....++.|++.+
T Consensus        25 ~lG~~~~---~G--~V~~V~~~spA~~aG-L~~GD~Il~Ing~---~v~-~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           25 QLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEINGQ---SVV-ATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             CCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEETTE---ECT-TSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             ccCeEec---CC--EEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCeEEEEEEE
Confidence            4676663   23  999999999999999 9999999998743   331 123456667777556677777764

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.28  E-value=7e-05  Score=59.50  Aligned_cols=61  Identities=15%  Similarity=0.353  Sum_probs=47.0

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~  170 (276)
                      .+++|..|.+++.|+++| |++||+|+.+-..   .+- -..+..+...|+....++.|.+.|.-.
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGE---SVI-GKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTE---ECS-SCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            469999999999999999 9999999998742   221 114556777787667788999988543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.27  E-value=0.00052  Score=59.52  Aligned_cols=71  Identities=7%  Similarity=-0.041  Sum_probs=54.0

Q ss_pred             HHHhhHHH-HHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKE-QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Ke-lkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|.++-+ +... ..-|+.-|..+.+.|++++|+..|++||+++|++.+  .+|.|.+.++.++|++++|+..+
T Consensus        85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHH
Confidence            55666666 4443 345778888888889999999999999998888753  27888888888888888887654

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=96.36  E-value=4.1e-05  Score=60.39  Aligned_cols=75  Identities=24%  Similarity=0.436  Sum_probs=49.9

Q ss_pred             eEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCccc-ccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           86 EYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k-~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      ..+|+|.|    ++|+.+..+.+  .+++|..|.++|.|++ +| |++||+|+++...   .+= ...+..+...|+...
T Consensus        28 ~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~---~v~-~~~~~~~~~~l~~~~  102 (112)
T 2lob_A           28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGV---NLR-DTKHKEAVTILSQQR  102 (112)
Confidence            34566554    57787776532  3899999999999999 66 9999999998743   231 113344555666544


Q ss_pred             CceEEEE
Q 023871          159 GPLLMKM  165 (276)
Q Consensus       159 gpv~L~l  165 (276)
                      +.+.|++
T Consensus       103 ~~v~l~V  109 (112)
T 2lob_A          103 GEIEFEV  109 (112)
Confidence            5566554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.26  E-value=0.00054  Score=69.34  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=56.7

Q ss_pred             ccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      .++.++|+|.|   +||+.+.-+.       +.++||..|.|||-|+++|.|++||+|+.|...   .+-.. ....++.
T Consensus        57 ~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~---~v~~~-~~~~~~~  132 (721)
T 2xkx_A           57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV---DVREV-THSAAVE  132 (721)
T ss_pred             CceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCE---ECCCC-CHHHHHH
Confidence            34567888875   7888887653       458999999999999999999999999998753   22111 1123445


Q ss_pred             HhhcccCceEEEEeec
Q 023871          153 TIRQRVGPLLMKMQKR  168 (276)
Q Consensus       153 air~r~gpv~L~l~R~  168 (276)
                      .|+.-...|.|.+.|.
T Consensus       133 ~l~~~g~~v~l~v~R~  148 (721)
T 2xkx_A          133 ALKEAGSIVRLYVMRR  148 (721)
T ss_pred             HhhccccccceEEEec
Confidence            5554344556666554

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.23  E-value=0.00026  Score=55.72  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEEEEeecCCC
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYGK  171 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L~l~R~~~~  171 (276)
                      .++|+.+.  .+.+++|..|.+++.|+++| |++||+|+.+-..   .+- ...+.++...|+...+ ++.|++.|+...
T Consensus        26 ~~~G~~l~--~~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~---~v~-~~~~~d~~~~i~~~~~~~v~l~V~~~~~~   98 (111)
T 1vae_A           26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGV---DCK-WLTVSEVMKLLKSFGGEEVEMKVVSLLDS   98 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEETTE---ECS-SCCHHHHHHHHHHTTTSEECEEEECEECC
T ss_pred             CcccEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCceEEEEEEecCCC
Confidence            45676663  34579999999999999999 9999999998743   221 1144556667775444 589999887654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.18  E-value=0.00021  Score=67.46  Aligned_cols=79  Identities=16%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             eEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHHhh
Q 023871           86 EYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTIR  155 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~air  155 (276)
                      .-+|+|.|    +||+.+....+|    +++|..|.|||-|+++|.|++||+|+.+...   .+  |+..   .+...|+
T Consensus       205 ~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~---~v~~~~~~---~~~~~l~  278 (388)
T 3suz_A          205 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGT---SLVGLPLA---TCQGIIK  278 (388)
T ss_dssp             CEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTE---ECSSCCST---THHHHTT
T ss_pred             ceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCE---EccCCCHH---HHHHHHH
Confidence            34666665    699998876655    7999999999999999999999999998753   33  3333   3445555


Q ss_pred             cc--cCceEEEEeecCC
Q 023871          156 QR--VGPLLMKMQKRYG  170 (276)
Q Consensus       156 ~r--~gpv~L~l~R~~~  170 (276)
                      ..  ..++.|.+.|...
T Consensus       279 ~~~~~~~v~l~v~r~~~  295 (388)
T 3suz_A          279 GLKNQTQVKLNIVSCPP  295 (388)
T ss_dssp             TCTTCSCEEEEEEECCS
T ss_pred             hccCCCccccccccccc
Confidence            42  3458999988543

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.14  E-value=0.0013  Score=56.50  Aligned_cols=80  Identities=10%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             cceeEEeee-----CCCCeEEEEeCCCCCcccccCccc-CCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871           94 PYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQV-GDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (276)
Q Consensus        94 PLGl~f~e~-----~dGgv~V~~v~~ggnA~k~G~i~v-GD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R  167 (276)
                      .||+.+..-     ...|++|.+|.+++.|+++| +++ ||+|+.+.    ..+-..+++-..+...  ...++.|.+.|
T Consensus        96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~in----g~v~~~~~l~~~l~~~--~g~~v~l~v~r  168 (209)
T 3rle_A           96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGAD----TVMNESEDLFSLIETH--EAKPLKLYVYN  168 (209)
T ss_dssp             SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEES----SCCCSSSCHHHHHHHT--TTSCEEEEEEE
T ss_pred             ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECC----CEeCCHHHHHHHHHhC--CCCeEEEEEEE
Confidence            478888642     23689999999999999999 999 99999985    2354455554444332  35579999999


Q ss_pred             cCCCcccccccch
Q 023871          168 RYGKMEQTGELSE  180 (276)
Q Consensus       168 ~~~~~~~~~~~~e  180 (276)
                      .-++....-.++.
T Consensus       169 ~~~~~~~~v~l~p  181 (209)
T 3rle_A          169 TDTDNCREVIITP  181 (209)
T ss_dssp             TTTTEEEEEEECC
T ss_pred             CCceEEEEEEEEe
Confidence            7665433333443

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.12  E-value=0.0012  Score=53.14  Aligned_cols=57  Identities=7%  Similarity=0.071  Sum_probs=42.9

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      ..+++|..|.+++.|+ +| |++||+|+++...      +..++.....+|...  ..++.|++.|.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~------~v~~~~~l~~~l~~~~~g~~v~l~v~R~  114 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDK------EIASSTDLQSALYNHSIGDTIKITYYRN  114 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTE------ECCCHHHHHHHHHHSSTTCEEEEEEEET
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCE------EcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            4689999999999999 88 9999999998743      233444555555543  34789999884

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.11  E-value=0.0011  Score=55.43  Aligned_cols=54  Identities=9%  Similarity=0.025  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          217 QDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      .++.-|..++.    .++|++|+..|++|++.+  +   ..+++|++.+|..    .+++++|+..+
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~  137 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGCASLGGIYHDGKVVTRDFKKAVEYF  137 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence            34566666666    677777777777776653  2   2467777777777    77777776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.001  Score=55.54  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=21.7

Q ss_pred             cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       228 ~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      .++|++|+..|++|++..+     ..+++|++.||..    .+++++|+..+
T Consensus       163 ~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~g~~~~~~~~~A~~~~  209 (273)
T 1ouv_A          163 PKDLKKALASYDKACDLKD-----SPGCFNAGNMYHHGEGATKNFKEALARY  209 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            4455555555555544321     1345555555555    55555555543

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.07  E-value=0.0014  Score=50.63  Aligned_cols=58  Identities=19%  Similarity=0.433  Sum_probs=44.5

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      ..|++|..|.+++.|+++| |++||+|+++...   .   ..++.....+++. ..++.|.+.|.-
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~~~~~~l~~-g~~v~l~v~R~g   91 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGR---P---LVDSSELQEAVLT-ESPLLLEVRRGN   91 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---E---CCSHHHHHHHHHH-CSSEEEEEEETT
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCE---E---CCCHHHHHHHHhC-CCeEEEEEEECC
Confidence            4689999999999999999 9999999998742   3   3344555555643 567899998853

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.06  E-value=0.0011  Score=50.26  Aligned_cols=46  Identities=7%  Similarity=-0.045  Sum_probs=25.7

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~  248 (276)
                      ..++++.++...- +..+-.|+.+|+.|+|++||..|+++|+.+|++
T Consensus        30 ~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           30 LLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3444555555442 334555666666666666666666666666553

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=97.05  E-value=0.0004  Score=61.13  Aligned_cols=76  Identities=17%  Similarity=0.412  Sum_probs=53.8

Q ss_pred             EEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce-
Q 023871           87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL-  161 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv-  161 (276)
                      ..|+|.|   .+|+.+..+.+ ++++|..|.+|+.|+++| |++||+|+.|-..   .|- ...+..+...|+.....+ 
T Consensus        11 r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~---~V~-~~s~~dl~~~l~~~g~~v~   85 (216)
T 2krg_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV---CME-GKQHGDVVSAIRAGGDETK   85 (216)
T ss_dssp             EEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTE---ECT-TCCTHHHHHHHHHHCSEEE
T ss_pred             EEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhcCCeEE
Confidence            4455554   47788866543 399999999999999999 9999999998642   221 114556666676555567 


Q ss_pred             EEEEee
Q 023871          162 LMKMQK  167 (276)
Q Consensus       162 ~L~l~R  167 (276)
                      .|++.|
T Consensus        86 ~l~V~R   91 (216)
T 2krg_A           86 LLVVDR   91 (216)
T ss_dssp             EEECCH
T ss_pred             EEEEEE
Confidence            777766

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.05  E-value=0.00085  Score=58.49  Aligned_cols=84  Identities=11%  Similarity=-0.024  Sum_probs=59.6

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-----hhhHHHH
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT-----PEESSVA  254 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~-----~~e~a~A  254 (276)
                      ....|+++.+...+++     +.++..+       ..-....|..++..|+|++|+..|+++|++.+.     .+....+
T Consensus        63 ~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  137 (373)
T 1hz4_A           63 LHCKGELTRSLALMQQ-----TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL  137 (373)
T ss_dssp             HHHHTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred             HHhcCcHHHHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence            3456777777554443     3333322       222357788889999999999999999976532     1334678


Q ss_pred             HHHHhHHHHhcCChhHHHhhh
Q 023871          255 SYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++|++.+|..+|++++|+..+
T Consensus       138 ~~~la~~~~~~g~~~~A~~~~  158 (373)
T 1hz4_A          138 VRIRAQLLWAWARLDEAEASA  158 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHH
Confidence            899999999999999998765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.04  E-value=0.0018  Score=62.85  Aligned_cols=66  Identities=12%  Similarity=-0.085  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       210 elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++.....+.++++..+..+|+|++|+..|+++|++     -|+++..+..+.|+|..|..+|+|++|+..+
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  374 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA  374 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            33444445567777888999999999999999954     4777888999999999999999999998754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.04  E-value=0.00032  Score=51.66  Aligned_cols=41  Identities=15%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       232 eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++|+..|+++++.+|++.   .+|+|++.||..+|++++|+..+
T Consensus         2 ~~a~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~   42 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNM---LLRFTLGKTYAEHEQFDAALPHL   42 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHccCHHHHHHHH
Confidence            468999999999999986   68999999999999999999876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.04  E-value=0.0036  Score=54.52  Aligned_cols=83  Identities=7%  Similarity=-0.055  Sum_probs=61.2

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--hhHHHHHH
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASY  256 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~e~a~A~Y  256 (276)
                      ...|++++++..     |.+..++..+         ..-....|..++..|+|++|+..|+++|.+.|..  .....+++
T Consensus       104 ~~~G~~~~A~~~-----~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A          104 FAQGFLQTAWET-----QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHTTCHHHHHHH-----HHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHCCCHHHHHHH-----HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            356666666444     4444444322         2223467888899999999999999999888763  22357899


Q ss_pred             HHhHHHHhcCChhHHHhhh
Q 023871          257 NVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       257 N~AcCyaKLgq~~eAI~aL  275 (276)
                      |.+.+|..+|++++|+..|
T Consensus       179 ~la~~~~~~g~~~~A~~~l  197 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQL  197 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999876

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.00  E-value=0.00072  Score=61.95  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCC--CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSK--PTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~--P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.-|..+..+|++++|+..|++|+...  |..  ...++||++.|+.++|+.++|+..|
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l  231 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALL  231 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4677888888888888888888888433  442  2457888888888888888888766

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0013  Score=57.95  Aligned_cols=58  Identities=19%  Similarity=0.290  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--------------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--------------ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--------------e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      -+++|..+++.|+|++|+..|.++|...|+..              ....+++|++..|.++|+|++|++.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~   78 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI   78 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35889999999999999999999999888752              22467999999999999999999764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.99  E-value=0.0019  Score=58.61  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeecCCC
Q 023871           95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRYGK  171 (276)
Q Consensus        95 LGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~~~~  171 (276)
                      |||.+... ...+++|..|.+++.|+++| |++||+|+.+...      +..++......+.. + ..++.|++.|..|+
T Consensus       231 lGi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          231 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDR------PINSADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             CCEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTE------ECCSHHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             cceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            78888764 35689999999999999999 9999999998642      23344455556653 2 34689999885454

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=96.96  E-value=0.0011  Score=50.19  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      ..|++|..|.+++.|++ | |++||+|+++...   .+   .++.....+|+..  ..++.|.+.|.
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~   62 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQ---PI---NTSEQIVSYVREKQAGDRVRVTFIRD   62 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTB---CC---CCHHHHHHHHHHSCTTCCEEEEEEET
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCE---EC---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            45799999999999998 8 9999999998743   22   3344556666643  45789999985

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=96.92  E-value=0.0014  Score=50.01  Aligned_cols=58  Identities=10%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       103 ~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      ...|++|..|.+++.|++ | |++||+|+++-..   .+   ..+.....++.. + ..++.|.+.|.
T Consensus         5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~---~v---~~~~dl~~~l~~~~~g~~v~l~v~R~   64 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGN---AF---KSSQEFIDYIHSKKVGDTVKINYKHG   64 (100)
T ss_dssp             CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETTB---CC---SSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECCE---EC---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            356999999999999995 7 9999999998643   33   334444555553 2 35789998884

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.92  E-value=0.0015  Score=62.04  Aligned_cols=58  Identities=10%  Similarity=-0.133  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..+-|..+..+|+|++|+..|+++|++     -|+.+..+..++|+|..|..+|++++|+..+
T Consensus       332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~  394 (429)
T 3qwp_A          332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL  394 (429)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            346677778899999999999999954     5888888999999999999999999999865

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.90  E-value=0.00081  Score=67.20  Aligned_cols=68  Identities=18%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      -+|+.+... .||++|..|.+||.|+++| |++||+|+++...   .| ..+++-..+...+ ...+|.|.+.|.
T Consensus       486 ~lG~~~~~~-~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~---~v-~~~~l~~~l~~~~-~g~~v~l~v~R~  553 (597)
T 4fgm_A          486 NFGAKYKAS-PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHL---QA-TEQSVKRILERYI-PGDTVTIHAFRR  553 (597)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC-CTTTHHHHHTTCC-TTCEEEEEEEET
T ss_pred             ccceEEecc-CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCE---EC-CHHHHHHHHHhcC-CCCEEEEEEEEC
Confidence            378888765 4689999999999999999 9999999998743   44 3444444433222 245788888884

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=96.88  E-value=0.00066  Score=50.49  Aligned_cols=68  Identities=15%  Similarity=0.155  Sum_probs=45.9

Q ss_pred             CcceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEee
Q 023871           93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQK  167 (276)
Q Consensus        93 KPLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R  167 (276)
                      +-+|+.-... +|   |+.|..+.|++.|+++| |++||+|+.+...   .+-   ++.....++..  ...++.|.+.|
T Consensus         5 ~~~~~~p~~~-~g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~---~v~---~~~d~~~~~~~~~~g~~v~l~v~R   76 (87)
T 2i6v_A            5 QYVRLSQVKR-DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGL---DLT---DPNVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             GTEEEEEEEE-TTEEEEEEEEECSCHHHHHHTT-CCTTCEEEEETTE---ETT---CHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred             hccceEEEee-CCeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEECCE---ECC---CHHHHHHHHHhcCCCCEEEEEEEE
Confidence            4456555543 45   77788888888889999 9999999998743   333   33333344442  24578999988


Q ss_pred             c
Q 023871          168 R  168 (276)
Q Consensus       168 ~  168 (276)
                      .
T Consensus        77 ~   77 (87)
T 2i6v_A           77 D   77 (87)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.86  E-value=0.0012  Score=56.96  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CChh-------------------hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTPE-------------------ESSVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~---P~~~-------------------e~a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      -.+--|..+|..++|..|+..|.+||...   |+..                   ....+.|.+|.||.+++++++||.-
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence            34678999999999999999999998432   1110                   0135899999999999999999998


Q ss_pred             hC
Q 023871          275 IE  276 (276)
Q Consensus       275 LE  276 (276)
                      ||
T Consensus       145 Le  146 (167)
T 3ffl_A          145 LD  146 (167)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=96.86  E-value=0.00055  Score=52.05  Aligned_cols=55  Identities=16%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~  168 (276)
                      |++|..|.|++.|++ | |++||+|+++...   .+   .++.....+|+..  ..++.|++.|.
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~   58 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGK---NY---QSAEKLIDYISSKKAGDKVTLKIERE   58 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTB---CC---SSHHHHHHHHSSCCSSCEECEEEESS
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCE---EC---CCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            688999999999999 8 9999999998743   33   3344566667654  45789999985

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=96.86  E-value=0.0022  Score=58.19  Aligned_cols=67  Identities=21%  Similarity=0.323  Sum_probs=50.1

Q ss_pred             ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCce
Q 023871           95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPL  161 (276)
Q Consensus        95 LGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv  161 (276)
                      |||.+..-           ...|++|..|.|++.|+++| |++||+|+++...      +...+......|+. + ..++
T Consensus       223 lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~l~~~l~~~~~g~~v  295 (318)
T 1te0_A          223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNK------PAISALETMDQVAEIRPGSVI  295 (318)
T ss_dssp             CCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEETTE------ECCCHHHHHHHHHTSCTTCEE
T ss_pred             ceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEE
Confidence            68877652           23589999999999999999 9999999998742      23344455666664 3 3578


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|++.|.
T Consensus       296 ~l~v~R~  302 (318)
T 1te0_A          296 PVVVMRD  302 (318)
T ss_dssp             EEEEESS
T ss_pred             EEEEEEC
Confidence            9999885

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.78  E-value=0.00094  Score=56.61  Aligned_cols=49  Identities=10%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             HHHhhHHHHHHHH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCChhhH
Q 023871          203 QNYMKKKEQKERR-EQDLREGLQLYRTG-----------KYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~g-----------rYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      ..|+++-++.... +.+++.|++++.+|           +|++|+..|++||+++|++..+
T Consensus        67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            6688888888764 55789999999875           8999999999999999998654

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=96.76  E-value=0.0017  Score=49.43  Aligned_cols=57  Identities=11%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             eEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc--CceEEEEeecCC
Q 023871          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKRYG  170 (276)
Q Consensus       107 v~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~--gpv~L~l~R~~~  170 (276)
                      .+|.+|.+++-|+++| |++||+|+++...   .   ...+..+..++....  .++.|.+.|.-+
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGI---E---TPDWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTE---E---CSSHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCE---E---CCCHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            4689999999999999 9999999998642   2   334445555565433  478999999764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.74  E-value=0.0038  Score=59.60  Aligned_cols=57  Identities=9%  Similarity=-0.167  Sum_probs=48.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++....+.|+|++|+..|+++|++     -|+++..+..+.|+|..|..+|+|++|+..+
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  363 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG  363 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            45555556789999999999999964     5888888999999999999999999998754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.70  E-value=0.0039  Score=54.00  Aligned_cols=70  Identities=9%  Similarity=-0.023  Sum_probs=58.4

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHc-CCCChhhHHHHHHHHhHHHHhcC
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLY-------RTGKY-------EVAREKFESVLG-SKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLf-------k~grY-------eEAI~~Ye~AL~-i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ..|.++-++... .+-|++-|..+.       +.|++       ++|+..|++||. ++|++.   .+|++.+..+.++|
T Consensus        37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---~~~~~~~~~~~~~~  113 (308)
T 2ond_A           37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRM  113 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcC
Confidence            568887777655 456788887775       46886       999999999999 799885   58999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|++.+
T Consensus       114 ~~~~A~~~~  122 (308)
T 2ond_A          114 KYEKVHSIY  122 (308)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.70  E-value=0.0033  Score=61.51  Aligned_cols=83  Identities=13%  Similarity=-0.001  Sum_probs=37.3

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCC----------HHHHHHHHHHHHcCCCChhhHH
Q 023871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGK----------YEVAREKFESVLGSKPTPEESS  252 (276)
Q Consensus       184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~gr----------YeEAI~~Ye~AL~i~P~~~e~a  252 (276)
                      +++-+..|.+++..    ...|.++-++..+- ..|..+|..+.+.|+          |++|+..|++||..+|+++   
T Consensus        35 ~~~~~~~~~~~eea----l~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---  107 (567)
T 1dce_A           35 VFQKRQAGELDESV----LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---  107 (567)
T ss_dssp             HHHHHHTTCCSHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---
T ss_pred             HHHHHHcCCCCHHH----HHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---
Confidence            34445566665431    12233333333331 234444444444444          5555555555555555443   


Q ss_pred             HHHHHHhHHHHhcC--ChhHHHh
Q 023871          253 VASYNVACCYSKLN--QVPLLLA  273 (276)
Q Consensus       253 ~A~YN~AcCyaKLg--q~~eAI~  273 (276)
                      .+|++++-+..+++  +|+++++
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~  130 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELE  130 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHH
Confidence            34555555555554  3344443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.57  E-value=0.0043  Score=56.79  Aligned_cols=126  Identities=8%  Similarity=0.056  Sum_probs=86.8

Q ss_pred             cccchhHHHHhhcccCceEEEEe-ec-CCCcccccccchHH----HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH
Q 023871          144 AAEYGRTMYTIRQRVGPLLMKMQ-KR-YGKMEQTGELSEKE----IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ  217 (276)
Q Consensus       144 a~~~g~~~~air~r~gpv~L~l~-R~-~~~~~~~~~~~e~~----~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~  217 (276)
                      .+.+|.-..++.-..+.+.-.+. -+ ||++++-- -+-.+    -+..--..|+++++...++......-..+     .
T Consensus        64 ~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v-~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-----~  137 (282)
T 4f3v_A           64 RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV-TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-----V  137 (282)
T ss_dssp             GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC-SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-----H
T ss_pred             HHHHHHHHHHhcCChhhhhhhhccCCccccccccc-CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-----H
Confidence            34556555566666666666665 33 56665422 11122    13444588999999888877433333333     3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      .+..|+.+++.+||++|+..|+.++...++. ....++||.++++..+|++++|+..|+
T Consensus       138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~  195 (282)
T 4f3v_A          138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLT  195 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4689999999999999999999998764332 224689999999999999999998864

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=96.55  E-value=0.0029  Score=48.66  Aligned_cols=58  Identities=10%  Similarity=0.178  Sum_probs=39.2

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      |++|..+.|++.|+++| |++||+|+.+-..   .+-...++-..+..++ ...++.|.+.|.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~---~v~~~~d~~~~~~~~~-~g~~v~l~v~R~   95 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGL---DLTDPNVMNTLFQSMN-EMTEMSLTVERD   95 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTE---ETTSTTHHHHHHHHHT-TCSEEEEEEEET
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCE---ECCCHHHHHHHHHhcC-CCCeEEEEEEEC
Confidence            56677777777779999 9999999998743   4433344333333322 245789999884

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.52  E-value=0.0067  Score=57.50  Aligned_cols=59  Identities=12%  Similarity=-0.043  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++.-.++.+.|+|++|+..|+++|++     -|+++.....+.|++..|..+|+|++|+...
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~  352 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG  352 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4445666778899999999999999965     4777778899999999999999999998754

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=96.43  E-value=0.0058  Score=57.13  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhccc-CceEEEEeecC
Q 023871           95 YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRV-GPLLMKMQKRY  169 (276)
Q Consensus        95 LGl~f~e~--~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~-gpv~L~l~R~~  169 (276)
                      +|+.|...  .+++++|..|.+++.|+++| |++||+|+++-..      +..+  ...+...|+... .++.|.+.|.-
T Consensus        87 iG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g  159 (388)
T 1fc6_A           87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGT------AVKGMSLYDVSDLLQGEADSQVEVVLHAPG  159 (388)
T ss_dssp             CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            67777654  25799999999999999999 9999999998753      2222  133455666443 35788888764


Q ss_pred             C
Q 023871          170 G  170 (276)
Q Consensus       170 ~  170 (276)
                      .
T Consensus       160 ~  160 (388)
T 1fc6_A          160 A  160 (388)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.37  E-value=0.0066  Score=55.41  Aligned_cols=56  Identities=20%  Similarity=0.375  Sum_probs=44.6

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .|++|.+|.+++.|+++| |++||+|+.+...   .+   .++.+...+|+. ..++.|.+.|.
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~---~v---~~~~~l~~~l~~-~~~v~l~v~R~  311 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQ---MV---QNAEDVYEAVRT-QSQLAVQIRRG  311 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC---CSHHHHHHHHTT-CSSEEEEEEET
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCE---Ec---CCHHHHHHHHhC-CCeEEEEEEEC
Confidence            599999999999999999 9999999998742   33   344455666665 47899999884

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.36  E-value=0.0096  Score=54.32  Aligned_cols=97  Identities=5%  Similarity=-0.177  Sum_probs=75.4

Q ss_pred             cccccccchHH-HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCC
Q 023871          172 MEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTG--KYEVAREKFESVLGSKPT  247 (276)
Q Consensus       172 ~~~~~~~~e~~-~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~  247 (276)
                      +-...+..+.- .+|+-+..|.++..    ....+.++-++...- ..|..+|..|..++  +|++||..++.+|.++|+
T Consensus        26 i~y~~~y~~~~~~~~a~~~~~e~s~~----aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk  101 (306)
T 3dra_A           26 ILYDEDYKQIMGLLLALMKAEEYSER----ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK  101 (306)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCCSHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred             eeeCHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence            33444444444 58998988888743    134566666666553 56899999999999  999999999999999999


Q ss_pred             hhhHHHHHHHHhHHH----Hhc---CChhHHHhhh
Q 023871          248 PEESSVASYNVACCY----SKL---NQVPLLLALI  275 (276)
Q Consensus       248 ~~e~a~A~YN~AcCy----aKL---gq~~eAI~aL  275 (276)
                      +.   .+|+++..|.    .++   ++++++++.+
T Consensus       102 ~y---~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~  133 (306)
T 3dra_A          102 NY---QIWNYRQLIIGQIMELNNNDFDPYREFDIL  133 (306)
T ss_dssp             CC---HHHHHHHHHHHHHHHHTTTCCCTHHHHHHH
T ss_pred             cH---HHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            96   6899999999    888   7888888765

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=96.30  E-value=0.0029  Score=46.64  Aligned_cols=55  Identities=16%  Similarity=0.463  Sum_probs=41.3

Q ss_pred             eEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (276)
Q Consensus       107 v~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~  168 (276)
                      ++|..|.+++.|+++| +++||+|+.+...      +..++......+... ..++.|.+.|.
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~l~~~~g~~v~l~v~R~   61 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQ------PLTQWVTFVMLVRDNPGXSLALEIERQ   61 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTE------ECCCHHHHHHHHHHCTTCCEEEEEEET
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCe------EcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence            5788999999999999 9999999998742      333445555566644 34789999884

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.29  E-value=0.011  Score=44.25  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=45.5

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQK--------ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelk--------kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A  259 (276)
                      +.|++..|+.-+++.     .++.        ....-...-|..++++|+|++|+..|++||.++|++.   .+..|+.
T Consensus        17 ~~~~y~~A~~W~~~A-----l~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~n~~   87 (104)
T 2v5f_A           17 TEADYYHTELWMEQA-----LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ---RANGNLK   87 (104)
T ss_dssp             HTTCHHHHHHHHHHH-----HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred             HccchHHHHHHHHHH-----HHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHhhHH
Confidence            667777776655552     2221        1122235778999999999999999999999999996   4567766

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.22  E-value=0.013  Score=44.15  Aligned_cols=57  Identities=18%  Similarity=-0.006  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~gr---YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.+...|..|+-.++   .++|...+++||+++|++.   .+++..+..+.+.|++++||..+
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---AALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            446688999965544   8999999999999999996   68999999999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.16  E-value=0.017  Score=47.65  Aligned_cols=57  Identities=7%  Similarity=-0.032  Sum_probs=39.4

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      +++-|..++.    .+++++|+.+|++|++..|.+ ....+++|++.||..    .+++++|+..+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            3455666655    678888888888888877742 113578888888877    77777777654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.13  E-value=0.0056  Score=56.80  Aligned_cols=68  Identities=16%  Similarity=0.329  Sum_probs=50.4

Q ss_pred             ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCce
Q 023871           95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPL  161 (276)
Q Consensus        95 LGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv  161 (276)
                      ||+.+..-           ...|++|.+|.+++.|+++| |++||+|+++-..      +..++......|+..  ..++
T Consensus       242 lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~------~v~~~~~l~~~l~~~~~g~~v  314 (345)
T 3stj_A          242 LGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGK------PLNSFAELRSRIATTEPGTKV  314 (345)
T ss_dssp             CCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHT-CCTTCEECEETTE------ECSCHHHHHHHHHTSCTTCEE
T ss_pred             cceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEE
Confidence            67776542           23589999999999999999 9999999997642      334555556666642  4468


Q ss_pred             EEEEeecC
Q 023871          162 LMKMQKRY  169 (276)
Q Consensus       162 ~L~l~R~~  169 (276)
                      .|++.|.-
T Consensus       315 ~l~v~R~g  322 (345)
T 3stj_A          315 KLGLLRNG  322 (345)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99999853

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.11  E-value=0.0077  Score=57.38  Aligned_cols=58  Identities=14%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .|++|.+|.+++.|+++| |++||+|+.+...      +..++.....+|+...+++.|.+.|.-
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~------~v~~~~~~~~~l~~~~~~v~l~v~R~g  420 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRD------RVNSIAEMRKVLAAKPAIIALQIVRGN  420 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            489999999999999999 9999999998743      345566677777877789999999853

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=96.05  E-value=0.03  Score=44.91  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g  159 (276)
                      +.++|+|.|   .+|+.+..+.. +.+|..|.+.  +..+| +++||+|+.+...   .|- -....++...|+..  ..
T Consensus        12 ~~~~V~L~Kg~~G~GFsI~~~~~-g~~V~~I~~~--~~~aG-L~~GD~Il~VNG~---~v~-~~~h~evv~~lk~~~~G~   83 (113)
T 3soe_A           12 LLVTIPLIKGPKGFGFAIADSPT-GQKVKMILDS--QWCQG-LQKGDIIKEIYHQ---NVQ-NLTHLQVVEVLKQFPVGA   83 (113)
T ss_dssp             EEEEEEEECBTTBSSEEEEEETT-EEEEEEESCG--GGSTT-CCTTCEEEEETTE---ECT-TSCHHHHHHHHHHSCTTC
T ss_pred             CEEEEEEEECCCcccEEEeCCCC-CcEEEEecCh--HHhCC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCCC
Confidence            567888876   57888854433 6779999883  55565 9999999998742   221 11334677778853  34


Q ss_pred             ceEEEEeecCC
Q 023871          160 PLLMKMQKRYG  170 (276)
Q Consensus       160 pv~L~l~R~~~  170 (276)
                      +|.|.+.|.-.
T Consensus        84 ~v~L~V~R~g~   94 (113)
T 3soe_A           84 DVPLLILRGGP   94 (113)
T ss_dssp             EEEEEEEESSC
T ss_pred             EEEEEEEECCc
Confidence            79999999543

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=95.98  E-value=0.015  Score=46.64  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             eeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEee
Q 023871          100 AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQK  167 (276)
Q Consensus       100 ~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R  167 (276)
                      -....++++|..|.+++.|+++  |++||+|+.+-..   .   ...+......++. + ..++.|++ |
T Consensus        20 ~~~~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~---~---v~~~~dl~~~l~~~~~g~~v~l~V-R   80 (125)
T 2hga_A           20 QGHQPDGVQIDSVVPGSPASKV--LTPGLVIESINGM---P---TSNLTTYSAALKTISVGEVINITT-D   80 (125)
T ss_dssp             ---CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTE---E---CSSHHHHHHHHTTCCTTCEEEEEE-T
T ss_pred             ccCCCCceEEEEECCCChHHHh--cCCCCEEEEECCE---E---cCCHHHHHHHHHhcCCCCEEEEEE-E
Confidence            3335679999999999999988  9999999998642   3   3344444555552 3 34678888 5

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.93  E-value=0.033  Score=51.74  Aligned_cols=47  Identities=21%  Similarity=-0.000  Sum_probs=41.3

Q ss_pred             HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ..|++++|+..|++||+.+|++.   .+|.+.+.++.++|++++|...+|
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~---~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HcCChhHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhCCCHhhHHHHHH
Confidence            58999999999999999999885   578999999999999999887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.92  E-value=0.0094  Score=49.24  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          217 QDLREGLQLYRTG----KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~g----rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      .++.-|..+.. +    ++++|+.+|++|++  +.+   ..+++|++.||..    .+++++|+..+
T Consensus        52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  112 (212)
T 3rjv_A           52 ALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS---KSGEIVLARVLVNRQAGATDVAHAITLL  112 (212)
T ss_dssp             HHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC---HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC---HHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence            34566666655 6    88888888888865  344   3578899988888    88888888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.88  E-value=0.012  Score=57.67  Aligned_cols=69  Identities=9%  Similarity=-0.141  Sum_probs=59.0

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-ChhHHHhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVPLLLAL  274 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg-q~~eAI~a  274 (276)
                      .+|.++-+...+ ...|..++..+.+.+  +|++||+.|+++|+++|++.   .||+++.-+..+++ .++++++.
T Consensus        94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~---~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc---cHHHHHHHHHHHcCCChHHHHHH
Confidence            556666666555 366899999999999  77999999999999999996   69999999999999 88888875

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=95.87  E-value=0.0087  Score=51.30  Aligned_cols=57  Identities=9%  Similarity=0.127  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCCcccccCcccC-CEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVG-DKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vG-D~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~  168 (276)
                      |++|..|.|++-|+++| |++| |+|+++...   .+-...++-  ...++.. ..++.|.+.|.
T Consensus        17 G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~---~v~~~~~~~--~~~~~~~~g~~v~l~v~R~   75 (209)
T 3rle_A           17 GYHVLRVQENSPGHRAG-LEPFFDFIVSINGS---RLNKDNDTL--KDLLKANVEKPVKMLIYSS   75 (209)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTTEEEEEETTE---ECCSSSSHH--HHHHHHTTTSCEEEEEEET
T ss_pred             EEEEEEECCCCHHHHCC-CCcCCeEEEEECCE---ECcCHHHHH--HHHHhcCCCCEEEEEEEec
Confidence            89999999999999999 9999 999998753   222222221  1122222 45678888775

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=95.86  E-value=0.0082  Score=55.29  Aligned_cols=68  Identities=22%  Similarity=0.397  Sum_probs=49.7

Q ss_pred             ceeEEeeeCC------CCeEEEEeCCCCCcccccCccc-----------CCEEEEeecccCCcceecccchhHHHHhhc-
Q 023871           95 YGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQV-----------GDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-  156 (276)
Q Consensus        95 LGl~f~e~~d------Ggv~V~~v~~ggnA~k~G~i~v-----------GD~l~~~Sa~fGdevw~a~~~g~~~~air~-  156 (276)
                      |||.+.....      .|++|.+|.+++.|+++| |++           ||+|+++-..      +..++...+.++.. 
T Consensus       235 lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~------~v~~~~dl~~~l~~~  307 (348)
T 3qo6_A          235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGT------KVSNGSDLYRILDQC  307 (348)
T ss_dssp             CCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTB------CCSSSHHHHHHHTTC
T ss_pred             cCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCE------EeCCHHHHHHHHHhC
Confidence            6787754321      499999999999999999 888           9999997643      33344556666653 


Q ss_pred             cc-CceEEEEeecC
Q 023871          157 RV-GPLLMKMQKRY  169 (276)
Q Consensus       157 r~-gpv~L~l~R~~  169 (276)
                      +. .++.|++.|.-
T Consensus       308 ~~g~~v~l~v~R~g  321 (348)
T 3qo6_A          308 KVGDEVTVEVLRGD  321 (348)
T ss_dssp             CTTCEEEEEEECSS
T ss_pred             CCcCEEEEEEEECC
Confidence            33 46899998853

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.79  E-value=0.0073  Score=51.02  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      +|.-|...++.|+|++|+..++++|+++|++.
T Consensus        74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           74 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            34445555555555555555555555555443

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.56  E-value=0.012  Score=56.43  Aligned_cols=57  Identities=12%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      +|++|.+|.+++.|+++| |++||+|+.+...      +..++.....+|+....++.|.+.|.
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~------~v~~~~~~~~~l~~~~~~v~l~v~R~  442 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKK------PVTDVKSLQTIAQEKKKELLVQVLRG  442 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHTTSSCSCEEEEEEET
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHhcCCCeEEEEEEEC
Confidence            489999999999999999 9999999998642      44555666777777677899999884

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.52  E-value=0.051  Score=60.28  Aligned_cols=77  Identities=13%  Similarity=0.054  Sum_probs=59.2

Q ss_pred             CCcchhHHHHH--HHHHhhHHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871          191 GVISNRVREIQ--MQNYMKKKEQKERR---EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (276)
Q Consensus       191 G~i~~al~Eiq--~~nYkk~Kelkkqa---e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL  265 (276)
                      ++.++++...-  ..+|.++-+.-.+.   +-|++-|.++.+.|+|+|||++|.+|     ++.   .+|++++-|+.++
T Consensus      1076 ~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~---say~eVa~~~~~l 1147 (1630)
T 1xi4_A         1076 DVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP---SSYMEVVQAANTS 1147 (1630)
T ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh---HHHHHHHHHHHHc
Confidence            45555433332  25677776666553   55899999999999999999999887     443   5799999999999


Q ss_pred             CChhHHHhhh
Q 023871          266 NQVPLLLALI  275 (276)
Q Consensus       266 gq~~eAI~aL  275 (276)
                      |++++||+.|
T Consensus      1148 GkyEEAIeyL 1157 (1630)
T 1xi4_A         1148 GNWEELVKYL 1157 (1630)
T ss_pred             CCHHHHHHHH
Confidence            9999999877

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.50  E-value=0.0085  Score=43.79  Aligned_cols=60  Identities=8%  Similarity=0.006  Sum_probs=45.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      ..-...|++++++..++     ++.++... ..-++..|..+++.|+|++|+..|++||++.|+..
T Consensus        15 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A           15 QEHLKHDNASRALALFE-----ELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             HHHHHTTCHHHHHHHHH-----HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHH-----HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            44457788888865554     44444443 34577999999999999999999999999887654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=95.50  E-value=0.014  Score=47.73  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             ceEEEEec----CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (276)
Q Consensus        85 ~~y~V~l~----KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa  135 (276)
                      .+++++|.    ..+|+.+.   +|  +|..|.+++.|+++| +++||+|+.+..
T Consensus        88 ~~~~v~l~~~~~~~lG~~~~---~g--~v~~v~~~s~a~~aG-l~~GD~I~~ing  136 (166)
T 1w9e_A           88 FERTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEING  136 (166)
T ss_dssp             TCEEEEEECCTTSCCSEEEE---TT--EEEEECTTSHHHHTT-CCSSEEEEEETT
T ss_pred             CcEEEEEecCCCCcEeEEEe---CC--EEEEEccCCHHHHcC-CCCCCEEEEECC
Confidence            34667776    45788776   34  899999999999999 999999999875

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=95.46  E-value=0.017  Score=55.06  Aligned_cols=58  Identities=14%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeecC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKRY  169 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~~  169 (276)
                      .|++|.+|.+++-|+++| |++||+|+++...   .   ..++......+...  ...+.|++.|.-
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~---~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g  322 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGK---P---LNSFAELRSRIATTEPGTKVKLGLLRNG  322 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCE---E---CCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999 9999999998743   2   33444445555432  357888888853

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.031  Score=49.14  Aligned_cols=57  Identities=12%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..-|..++..|+|++|+..+++++....   +......++.+.+.+|..+|+++.|...+
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  198 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL  198 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4668888999999999999999994422   22334678999999999999999998765

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=95.31  E-value=0.025  Score=54.04  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .++|..|.||+.|+++| |++||+|+++-..   .+-.. .   ....|+....+|.|.+.|.-
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~---~v~~~-~---~~~~l~~~g~~v~l~v~R~g  146 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGD---YITKK-V---ESELLQGSTRQLQIGVYKEV  146 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTB---CBCTT-T---GGGGTSCSCEEEEEEEEEEE
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCE---Eccch-h---HHHHhhCCCCEEEEEEEeCC
Confidence            48999999999999999 9999999999753   22211 1   23445554446788888764

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.26  E-value=0.015  Score=55.85  Aligned_cols=58  Identities=16%  Similarity=0.304  Sum_probs=44.2

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeecC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRY  169 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~~  169 (276)
                      .|++|..|.|++.|+++| |++||+|+.+-..      +..++.....+|.. + ...+.|++.|.-
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~------~v~~~~~l~~~l~~~~~g~~v~l~V~R~g  341 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDT------KITQATQVKTTISLLRVGSTVKIIVERDN  341 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            689999999999999999 9999999997643      33344555555553 2 356899998853

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.17  E-value=0.041  Score=51.13  Aligned_cols=70  Identities=9%  Similarity=-0.026  Sum_probs=44.4

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHc-CCCChhhHHHHHHHHhHHHHhcC
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYR-------TGKYE-------VAREKFESVLG-SKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk-------~grYe-------EAI~~Ye~AL~-i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ..|.++-++... .+-|+.-|.-+.+       .|+++       +|+..|++|+. ++|++.   .+|++.+..+.++|
T Consensus       259 ~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          259 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcC
Confidence            345555555443 2446666666654       57766       77777777775 677664   46777777777777


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|++.+
T Consensus       336 ~~~~A~~~~  344 (530)
T 2ooe_A          336 KYEKVHSIY  344 (530)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            777776554

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=95.02  E-value=0.004  Score=56.82  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      ..|++|.+|.+++.|+++| |++||+|+++-..   .+   .++.....+++. ..++.|++.|.
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v---~~~~~~~~~l~~-~~~v~l~v~R~  309 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQ---SV---VSANDVSDVIKR-ESTLNMVVRRG  309 (332)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCE---EC---CCHHHHHHHHhC-CCeEEEEEEEC
Confidence            3589999999999999999 9999999998643   33   233334444544 45688888884

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.95  E-value=0.031  Score=50.92  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=55.9

Q ss_pred             CcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          192 VISNRVREIQMQNYMKKKEQKER-REQDLREGLQL----YRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       192 ~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaL----fk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      +++++|.-+     .++-++..+ ...|.-++..+    ...   ++|+++|..++++|+.+|++.   .+|+++.-|..
T Consensus        84 ~~~eeL~~~-----~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny---~aW~~R~~vl~  155 (306)
T 3dra_A           84 NLYDELDWC-----EEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH---HVWSYRKWLVD  155 (306)
T ss_dssp             CHHHHHHHH-----HHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             cHHHHHHHH-----HHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence            555554433     333333333 24566777777    566   899999999999999999996   58999999999


Q ss_pred             hcCChh--HHHhhh
Q 023871          264 KLNQVP--LLLALI  275 (276)
Q Consensus       264 KLgq~~--eAI~aL  275 (276)
                      +++.++  ++++..
T Consensus       156 ~l~~~~~~~EL~~~  169 (306)
T 3dra_A          156 TFDLHNDAKELSFV  169 (306)
T ss_dssp             HTTCTTCHHHHHHH
T ss_pred             HhcccChHHHHHHH
Confidence            999998  877653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.92  E-value=0.076  Score=44.76  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTG---KYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~g---rYeEAI~~Ye~AL~i~-P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++=|..|.+.+   +++++|..++..+..+ |+.  ...++||+|-.|.++++++.|+..+
T Consensus        34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--hHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3458899999988   8889999999999877 632  2468999999999999999998765

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=94.74  E-value=0.0053  Score=58.96  Aligned_cols=67  Identities=15%  Similarity=0.366  Sum_probs=0.0

Q ss_pred             ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        95 LGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      +|+.+..- ...+++|.+|.+++.|+++| |++||+|+.+...   .+   .++.....+|+...+++.|.+.|.
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~---~v---~~~~~l~~~l~~~~~~v~l~v~R~  439 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQ---AV---KNIAELRKVLDSKPSVLALNIQRG  439 (448)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECCE---EC---CCHHHHHHHHHcCCCeEEEEEEEC
Confidence            36666432 34589999999999999999 9999999998642   33   334444556666667888888884

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.72  E-value=0.086  Score=41.09  Aligned_cols=55  Identities=5%  Similarity=-0.099  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          216 EQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      ..+++-|..++.    .+++++|+.+|++|.+.  .+   ..+++|++.+|..    .+++++|+..+
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---QDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            445678888877    89999999999999976  23   3689999999999    99999998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.66  E-value=0.099  Score=58.03  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             HHHHhhcCCCcchhHHHHHH---------------HHHhhHHHHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023871          183 IIRAERNSGVISNRVREIQM---------------QNYMKKKEQKER--------REQDLREGLQLYRTGKYEVAREKFE  239 (276)
Q Consensus       183 ~~~~~r~~G~i~~al~Eiq~---------------~nYkk~Kelkkq--------ae~~~~eGnaLfk~grYeEAI~~Ye  239 (276)
                      ++.+=...|+++++++-.++               ..|-|-.++..-        ..++..-|..+++.|+|++|+..|+
T Consensus      1140 Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A         1140 VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34445567788888777766               112221111110        1246788999999999999999999


Q ss_pred             HHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          240 SVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       240 ~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +|           .-|...+.||.++|++++||++-
T Consensus      1220 kA-----------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1220 NV-----------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             hh-----------hHHHHHHHHHHHhCCHHHHHHHH
Confidence            97           14899999999999999999863

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.46  E-value=0.062  Score=49.38  Aligned_cols=53  Identities=13%  Similarity=0.003  Sum_probs=43.7

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      ++.-|..++.    .+++++|+.+|++|++..  +   ..+++|++.+|.+    .+++++|+..+
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  426 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---SAAQVQLGEIYYYGLGVERDYVQAWAWF  426 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            4566777777    799999999999999754  2   3589999999999    89999998765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.40  E-value=0.056  Score=52.74  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=34.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESV  241 (276)
Q Consensus       203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A  241 (276)
                      ..|..++..-.+...|..-|..|+++|+|++|++.|.+|
T Consensus       136 g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          136 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            667777777778788899999999999999999999999

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=94.37  E-value=0.059  Score=50.59  Aligned_cols=101  Identities=8%  Similarity=-0.122  Sum_probs=72.6

Q ss_pred             cCCCcccccccchHH-HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 023871          168 RYGKMEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTG-KYEVAREKFESVLGS  244 (276)
Q Consensus       168 ~~~~~~~~~~~~e~~-~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i  244 (276)
                      +.-++....+..+.- .+|+-+..+..+..    ....+.++-++...- ..|..++..|...+ +|+++|..++++|..
T Consensus        43 ~~~~i~y~~~y~~~~~~~r~~~~~~e~se~----AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~  118 (349)
T 3q7a_A           43 PVVPIMYSEEYKDAMDYFRAIAAKEEKSER----ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ  118 (349)
T ss_dssp             CSSCBCCCHHHHHHHHHHHHHHHTTCCSHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             CeeeeeeCHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            334444444444443 57887777777643    124455555555543 55888999998888 599999999999999


Q ss_pred             CCChhhHHHHHHHHhHHHHhc-C-ChhHHHhhh
Q 023871          245 KPTPEESSVASYNVACCYSKL-N-QVPLLLALI  275 (276)
Q Consensus       245 ~P~~~e~a~A~YN~AcCyaKL-g-q~~eAI~aL  275 (276)
                      +|++.   .+|+++..|..++ + +++++++.+
T Consensus       119 nPKny---~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A          119 NLKSY---QVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             TCCCH---HHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             CCCcH---HHHHHHHHHHHHhcCCChHHHHHHH
Confidence            99996   6899999999998 7 788887654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.08  E-value=0.065  Score=55.29  Aligned_cols=50  Identities=24%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       224 aLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      =|-+.|+|+-|+.+-.+|..+.|.+-   ..||+.|-||.++|+|+.|+-.|+
T Consensus       346 FLl~K~~~elAL~~Ak~AV~~aPseF---~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          346 FLLNRGDYELALGVSNTSTELALDSF---ESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHhcCchhh---HHHHHHHHHHHHhccHHHHHHHHh
Confidence            34578999999999999999999995   699999999999999999997763

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.99  E-value=0.082  Score=49.08  Aligned_cols=56  Identities=11%  Similarity=-0.117  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC-hhHHHhhh
Q 023871          217 QDLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq-~~eAI~aL  275 (276)
                      .|.-++..+.+.+  +|+++++.++++|+++|.+.   .||+++.-+..+++. ++++++..
T Consensus       110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy---~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A          110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCcCHHHHHHHH
Confidence            3566777777887  49999999999999999986   589999999999998 57777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.92  E-value=0.099  Score=53.31  Aligned_cols=69  Identities=9%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             cceeEEeeeCCCCeEEEEeCCC--------CCccccc-CcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEE
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPG--------GSADKTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLM  163 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~g--------gnA~k~G-~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L  163 (276)
                      -+|+.|.. .+|+++|..|.+|        +.|+++| .|+ ||+|++|-..   .+   .+...+...|+...| +|.|
T Consensus       738 g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~---~~---~~~~~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          738 RIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGE---TV---GAGSNIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             BCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTE---EC---BTTBCHHHHHHTTTTSEEEE
T ss_pred             eecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCE---Ec---cchhhHHHhhcCCCCCEEEE
Confidence            46788876 4689999999998        9999999 489 9999998753   22   222244556665544 6799


Q ss_pred             EEeecCC
Q 023871          164 KMQKRYG  170 (276)
Q Consensus       164 ~l~R~~~  170 (276)
                      ++.|.-+
T Consensus       810 ~v~r~~~  816 (1045)
T 1k32_A          810 RLSGKGG  816 (1045)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9988653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.88  E-value=0.067  Score=49.66  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH-H--HhcCChhHHHhh
Q 023871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACC-Y--SKLNQVPLLLAL  274 (276)
Q Consensus       230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC-y--aKLgq~~eAI~a  274 (276)
                      ++++|+.+|++|.   |.+.   .+++|++.+ |  ...+++++|+..
T Consensus       232 d~~~A~~~~~~aa---~g~~---~a~~~Lg~~~~~~~~~~d~~~A~~~  273 (452)
T 3e4b_A          232 DEKTAQALLEKIA---PGYP---ASWVSLAQLLYDFPELGDVEQMMKY  273 (452)
T ss_dssp             CHHHHHHHHHHHG---GGST---HHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred             CHHHHHHHHHHHc---CCCH---HHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            4444444444444   3332   345555555 3  345555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.72  E-value=0.024  Score=55.26  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|..-|..+|..|+|++|+..|+++     +      .|.++|-|+.++|++++|+++.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~------n~~~LA~~L~~Lg~yq~AVea~  171 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----S------NFGRLASTLVHLGEYQAAVDGA  171 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----T------CHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----h------hHHHHHHHHHHhccHHHHHHHH
Confidence            7889999999999999999999988     1      4889999999999999999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=93.33  E-value=0.15  Score=46.79  Aligned_cols=53  Identities=6%  Similarity=-0.034  Sum_probs=35.0

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      ++.-|..+..    .++|++|+.+|++|++..  +   ..+++|++.||..    .+++++|++.+
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  174 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--R---DSGQQSMGDAYFEGDGVTRDYVMAREWY  174 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            3455555555    667777777777776542  2   2467778887777    77777777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.01  E-value=0.11  Score=49.62  Aligned_cols=50  Identities=6%  Similarity=-0.064  Sum_probs=43.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       223 naLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.++..|++++|+..+++||.++|+.    .+|.-.+.+|...|++++|++.++
T Consensus       285 l~~l~~gd~d~A~~~l~rAl~Ln~s~----~a~~llG~~~~~~G~~~eA~e~~~  334 (372)
T 3ly7_A          285 VSALVKGKTDESYQAINTGIDLEMSW----LNYVLLGKVYEMKGMNREAADAYL  334 (372)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34456799999999999999999864    467888999999999999998763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.87  E-value=0.21  Score=46.14  Aligned_cols=43  Identities=9%  Similarity=0.040  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       229 grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++|++|+..|+++++..|+.. ....++|   ||.++|++++|-..|
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~-~~~lLln---~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWK-TQLGLLN---LHLQQRNIAEAQGIV  234 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHH-HHHHHHH---HHHHHTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcc-cHHHHHH---HHHHcCCHHHHHHHH
Confidence            499999999999999888721 1357888   999999999998876

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=92.61  E-value=0.079  Score=50.81  Aligned_cols=57  Identities=18%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      .|++|.+|.+++.|+++| |++||+|+.+-..   .+   .++.....+|.. + ...+.|++.|.
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~  344 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGK---PI---SSFAALRAQVGTMPVGSKLTLGLLRD  344 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSS---BC---CSSHHHHHHTTSSBTTCCCEEEEESS
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCE---Ec---CCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            599999999999999999 9999999987642   33   334445555653 2 45678998884

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=92.60  E-value=0.18  Score=46.81  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC----------hhHHHhhh
Q 023871          219 LREGLQLYRTGKYE-VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ----------VPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYe-EAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq----------~~eAI~aL  275 (276)
                      .+.-.+.-+.|.|. +||..++++|.++|++.   .+|+++..|...++.          +++++..+
T Consensus        33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y---taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~   97 (331)
T 3dss_A           33 TQAVFQKRQAGELDESVLELTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFL   97 (331)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            34444555677776 89999999999999996   689999999988876          56666543

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=92.12  E-value=0.027  Score=52.98  Aligned_cols=55  Identities=20%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             EEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871          108 YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (276)
Q Consensus       108 ~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R  167 (276)
                      +|..|.+||.|+++| +++||+|+.+...   .|-. .....+..+|+...+.+.|++..
T Consensus       318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~---~v~~-~s~~~~~~~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          318 IICSLMRGGIAERGG-VRVGHRIIEINGQ---SVVA-TAHEKIVQALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ------------------------------------------------------------
T ss_pred             EEEEeecCCHHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCCeEEEEEEe
Confidence            899999999999999 9999999998753   2211 11234556667667777777643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=91.86  E-value=0.11  Score=48.61  Aligned_cols=64  Identities=14%  Similarity=-0.039  Sum_probs=51.4

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRT-G-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP  269 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~-g-rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~  269 (276)
                      .++.++-+...+ ...|.-++..+.+. + +++++|+.++++|+.+|++.   .||+++.-|..+++.++
T Consensus       110 ~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy---~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          110 RLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY---HTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH---HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcccc
Confidence            334444433333 35688899999887 8 99999999999999999996   69999999999999888

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=91.75  E-value=0.32  Score=48.32  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             ceeEEeee------------CCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871           95 YGLKFAKG------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (276)
Q Consensus        95 LGl~f~e~------------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa  135 (276)
                      ||+.+..-            ...|++|.+|.|++.|++ + |++||+|+.+..
T Consensus       255 LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg  305 (539)
T 4fln_A          255 LGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASK-V-LKEGDVIVSFDD  305 (539)
T ss_dssp             CCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGG-T-CCTTCEEEEETT
T ss_pred             cceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHh-C-ccCCCEEEEECC
Confidence            68877553            235999999999999986 4 999999999764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=91.58  E-value=0.28  Score=45.40  Aligned_cols=54  Identities=7%  Similarity=-0.105  Sum_probs=46.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCC--ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKP--TPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P--~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +--|..++..|+|++|+.++++.|+..|  ++   ..++.-.+-||+++|+.+.|.+.|
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~---lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGT---TELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4667777889999999999999999887  44   357888999999999999998866

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.97  E-value=0.58  Score=36.28  Aligned_cols=50  Identities=4%  Similarity=-0.125  Sum_probs=41.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      -|.-++..+.+++|+.+|++|.+.  .+   ..++||++.||..    .+++++|+..+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NS---GNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            555556678899999999999986  33   3689999999999    89999998765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=90.65  E-value=0.38  Score=44.54  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      ++++|+.+|++|+   |.+.   .++||++.||..    ..++++|+..+
T Consensus       302 d~~~A~~~~~~Aa---~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~  345 (452)
T 3e4b_A          302 DAKAAEAHFEKAV---GREV---AADYYLGQIYRRGYLGKVYPQKALDHL  345 (452)
T ss_dssp             CHHHHHHHHHTTT---TTCH---HHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHh---CCCH---HHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            7777777777776   4443   467777777666    33666665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.51  E-value=0.5  Score=38.68  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      +++-.+--|...|++|+|++|+...+..|+++|++...
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            44446788889999999999999999999999988643

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=89.79  E-value=1.4  Score=33.42  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +..++-+.+.+|.+.-+.|+|++|+..|..||+
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334444556777888999999999999998884

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=89.26  E-value=1.2  Score=35.45  Aligned_cols=52  Identities=27%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK  264 (276)
                      ++++..+.+|-.+|+.++|.+|+..|++++.+--|....-.+.+...-|--|
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk  102 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            3455678999999999999999999999994433332222333445555443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.03  E-value=1.4  Score=33.15  Aligned_cols=30  Identities=13%  Similarity=0.097  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      ++-+.+.+|.+.-+.|+|++|+..|..||+
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            444556778899999999999999998884

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=86.43  E-value=3.3  Score=31.07  Aligned_cols=35  Identities=17%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      -+-+..|..|...|++++|+..|-+||.++|+..+
T Consensus        18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            34468999999999999999999999999999754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.00  E-value=1.6  Score=36.23  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      +++-++--|...|++|+|++|+..-+..|+++|++...
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34446788889999999999999999999999998654

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.53  E-value=1.5  Score=33.36  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +-+.+.+|.++-+.|+|++|+..|..|++
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455777888899999999999999884

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.59  E-value=3.2  Score=34.85  Aligned_cols=36  Identities=14%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES  251 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~  251 (276)
                      +-.+--|...|++|+|++|...-+..|+++|++...
T Consensus        78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            335677888888899999988888888888888644

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.32  E-value=4.3  Score=32.54  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +...+.+|..+-+.|+|++||..|..|++
T Consensus        18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie   46 (117)
T 2cpt_A           18 AIDLASKAAQEDKAGNYEEALQLYQHAVQ   46 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            33445566777788999999999998875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=80.98  E-value=0.89  Score=43.29  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      .-.|..+.-.|++++|++.|++|+.++|..+
T Consensus       314 ~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          314 VLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            4667777789999999999999999999986

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=80.78  E-value=4.8  Score=37.19  Aligned_cols=84  Identities=11%  Similarity=0.023  Sum_probs=60.5

Q ss_pred             cCCCcchhHHHHHH-------HH----------HhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871          189 NSGVISNRVREIQM-------QN----------YMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (276)
Q Consensus       189 ~~G~i~~al~Eiq~-------~n----------Ykk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e  250 (276)
                      ..|+.+.++..+++       ++          -...-.+...+..+. ..+..+...|+|++|+...++++..+|-++ 
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E-  205 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE-  205 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-
Confidence            46777777776666       10          011233334443333 344455789999999999999999999886 


Q ss_pred             HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          251 SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       251 ~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                        .+|.-.-.||...|+..+|++.+
T Consensus       206 --~~~~~lm~al~~~Gr~~~Al~~y  228 (388)
T 2ff4_A          206 --PLWTQLITAYYLSDRQSDALGAY  228 (388)
T ss_dssp             --HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHH
Confidence              48899999999999999999764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=80.64  E-value=2.5  Score=32.36  Aligned_cols=30  Identities=13%  Similarity=0.209  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      ++-+.+.+|.++-+.|+|++|+..|..|++
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie   43 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            334455777888889999999999888874

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=80.33  E-value=3.8  Score=38.17  Aligned_cols=71  Identities=10%  Similarity=-0.084  Sum_probs=50.4

Q ss_pred             HHHhhHHHHHHHHHH--HH-HHHHHHHHc-----CCHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhHHHHhc-CChhHHH
Q 023871          203 QNYMKKKEQKERREQ--DL-REGLQLYRT-----GKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKL-NQVPLLL  272 (276)
Q Consensus       203 ~nYkk~Kelkkqae~--~~-~eGnaLfk~-----grYeEAI~~Ye~AL~i~P~~-~e~a~A~YN~AcCyaKL-gq~~eAI  272 (276)
                      ....|+.++.....+  ++ --|.-.++.     |+.+.|...|++||+++|+. .   ..+|.-|--++.. ++.++|.
T Consensus       184 a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~  260 (301)
T 3u64_A          184 MMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFD  260 (301)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHH
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHH
Confidence            556677777776533  22 233323442     99999999999999999975 4   4677777778774 8888888


Q ss_pred             hhhC
Q 023871          273 ALIE  276 (276)
Q Consensus       273 ~aLE  276 (276)
                      ..|+
T Consensus       261 ~~L~  264 (301)
T 3u64_A          261 EALD  264 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-06
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	7e-06
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-05
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	6e-05
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-04
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-04
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-04
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-04
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	5e-04
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	6e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-04
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	0.001
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	0.002
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.002
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.002
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.002
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	0.003
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	0.003
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	0.004
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	0.004

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E   + +G     GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVL 131
           D+++
Sbjct: 59  DQII 62

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 87  YEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           Y VE++    P G+  +   +      I ++  GG A++TG   +GD++L
Sbjct: 5   YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRIL 54

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +++  +    V  E   GLK   G +       YI  + PGG   K G  + GD++++
Sbjct: 3   LDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 61

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 75  SGSEEQEEKYEEYEVEI---EQPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           SGS      Y+E +V +   E  +G +   G + G    I A+   GSAD+ G    GD+
Sbjct: 3   SGSSG----YKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDE 58

Query: 130 VLA 132
           ++ 
Sbjct: 59  LVY 61

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 89  VEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 5   VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 73  AESGSEEQEEK---YEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQV 126
             SG E ++++    E   V+++   +P G+    G  GG Y+  +  G  A + G+ + 
Sbjct: 4   GSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL-EY 62

Query: 127 GDKVLAT 133
           GD++L  
Sbjct: 63  GDQLLEF 69

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 60  AKASETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKFA-KGRDGGTYIDAIAPGGS 117
           +  S        +            +  + ++     GL            I  +   G+
Sbjct: 2   SSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGA 61

Query: 118 ADKTGMFQVGDKVLA 132
           A   G+ Q GD +++
Sbjct: 62  AASDGILQPGDVLIS 76

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 77  SEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
            +  + K       ++     +G     G +      + ++ P G A + G  + GD ++
Sbjct: 11  RDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 132 A 132
            
Sbjct: 71  Y 71

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD----GGTYIDAIAPGGSADKT 121
           +S +     + +E + EE ++     +   GL      D     G YI  I P   A K 
Sbjct: 5   SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 65  GRIREGDRIIQ 75

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   + +E      G     G          Y+  +   G+A + G  + GD+++A
Sbjct: 2   QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIA 57

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 80  QEEKYEEYEVEIEQPYGLKFAKGRDG-----GTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           +E +     ++ +   GL     +       G Y+ ++  GG+AD  G    GD++L+ 
Sbjct: 1   KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 59

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDK 129
           +   VE+     +  G+    GR             G +I  +     A K G  + GD+
Sbjct: 1   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 130 VL 131
           ++
Sbjct: 61  IV 62

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 88  EVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           EV +    +  G   A G        D   YI  I  GG+A K G  Q+GD++LA 
Sbjct: 4   EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 59

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEI----EQPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG--------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E      G+       G        G ++  +  GG+A + G  QV D+++ 
Sbjct: 2   ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 60

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 88  EVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +V IE    +  G+   +   G       I  +  GG A+K+G   +GD++++
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMS 53

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGM 123
           ++ +    S  +   +      ++ E    L    G D   G   + A+  GG+A++ G 
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61

Query: 124 FQVGDKV 130
              GD++
Sbjct: 62  VVKGDEI 68

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 85  EEYEVEI----EQPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +GL+        +       +  I P   A++ G+ QVGD+VL+
Sbjct: 8   ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 65

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 92  EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 16  AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 71  PEAESGSEEQEEKYEEYEVEI-------EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           P  +    E    Y    V+I       + P G    +       I  I  GG+A+K+G+
Sbjct: 1   PITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGL 59

Query: 124 FQVGDKVLA 132
              GD+VL 
Sbjct: 60  LHEGDEVLE 68

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V++        G+  +            I  I  G  A +TG  ++GDK+LA
Sbjct: 10  GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLA 65

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L
Sbjct: 1   EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 92  EQPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
              YG      +   G YI  + PG  A+K G+   GD+++ 
Sbjct: 13  PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGL-LAGDRLVE 53

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 75  SGS--EEQEEKYEEYEVEIE----QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQ 125
           SGS  +          VEI        G+              ID I P    D++G   
Sbjct: 3   SGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALH 62

Query: 126 VGDKVL 131
            GD +L
Sbjct: 63  PGDHIL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.93
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.91
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.9
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.79
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.77
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.74
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.74
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.73
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.73
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.73
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.71
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.7
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.69
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.69
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.66
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.66
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.64
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.62
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.61
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.59
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.58
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.57
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.55
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.55
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.54
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.53
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.52
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.5
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.5
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.46
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.46
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.46
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.45
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.45
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.4
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.39
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.37
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.34
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.33
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.32
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.29
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.29
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.29
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.28
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.27
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.22
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.21
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.2
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.2
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.19
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.18
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.17
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.17
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.13
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.09
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.01
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	97.99
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.94
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.9
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	97.89
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	97.82
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	97.78
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.78
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.62
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	97.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.42
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.23
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	97.22
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	97.06
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.04
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	96.99
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.95
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	96.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.55
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.42
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.06
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	95.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.22
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.93
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	90.1
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	87.74
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.71
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	87.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.52
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	82.34

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=5e-11  Score=94.09  Aligned_cols=79  Identities=10%  Similarity=0.031  Sum_probs=59.8

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|+     ..|.++-++... ..-+.+.|..+++.|+|++||..|++||+++|++.   .+|+|+|.||.++|+
T Consensus        16 ~~g~~~~Ai-----~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~---~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          16 VGRKYPEAA-----ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFFLGQCQLEMES   87 (201)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHH-----HHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH---HHHHHHHHHHHHCCC
Confidence            677777774     445555555544 34467888888888888888888888888888875   578888888888888


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+..+
T Consensus        88 ~~~A~~~~   95 (201)
T d2c2la1          88 YDEAIANL   95 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.8e-10  Score=87.86  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++..+++.|+.+|..|+|++||..|++||+++|++.   .+++|+|.||.++|+|++|+..+
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~   61 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---TYITNQAAVYFEKGDYNKCRELC   61 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHhHHHHHHHcCchHHHHHHH
Confidence            455667999999999999999999999999999985   68999999999999999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.9e-10  Score=85.24  Aligned_cols=79  Identities=16%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|+     ..|.++-++...- .-+...|+.+++.|+|++|+..|++||.++|++.   .+|+|++.||..+|+
T Consensus        15 ~~g~~~eAi-----~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          15 SVGNIDDAL-----QCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYSRKAAALEFLNR   86 (117)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHH-----HHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh---hHHHHHHHHHHHccC
Confidence            667777773     4555665555553 4467888888888888888888888888888885   578899999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+.++
T Consensus        87 ~~~A~~~~   94 (117)
T d1elwa_          87 FEEAKRTY   94 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=7.8e-10  Score=87.08  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +++.++.|+.+|+.|+|++||..|++||+++|++.   .+|+|+|.||.++|++++|+..+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~---~~~~~lg~~y~~~~~~~~Ai~~~   61 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---VYYTNRALCYLKMQQPEQALADC   61 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHhhhhhhhhhhHHH
Confidence            35567999999999999999999999999999995   69999999999999999999876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-09  Score=86.29  Aligned_cols=79  Identities=15%  Similarity=0.038  Sum_probs=59.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|+     ..|+++.++...- .-|...|..+++.|+|++|+..|++||+++|++.   .+|+++|.||..+|+
T Consensus        22 ~~~~y~~A~-----~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~---~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          22 KAKDYENAI-----KFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYRRAASNMALGK   93 (159)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHH-----HHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch---HHHHHHHHHHHHcCC
Confidence            667777763     4455555665553 4467888888888888888888888888888875   578888888888888


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+.++
T Consensus        94 ~~eA~~~~  101 (159)
T d1a17a_          94 FRAALRDY  101 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888765

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.3e-09  Score=81.26  Aligned_cols=83  Identities=29%  Similarity=0.497  Sum_probs=65.4

Q ss_pred             ccceEEEEecC---cceeEEeee----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR  149 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~  149 (276)
                      |-+.|+|+|.|   +||+.+...          .++++||..|.|||.|+++|.|++||+|+.+...   .| .-..+-+
T Consensus         2 pg~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~---~v-~~~s~~~   77 (99)
T d1ozia_           2 PGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV---SL-EGATHKQ   77 (99)
T ss_dssp             TTCEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTE---EC-SSCCHHH
T ss_pred             CCCEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCE---Ec-CCCCHHH
Confidence            34679999986   688888643          2347999999999999999999999999998753   22 1225557


Q ss_pred             HHHHhhcccCceEEEEeecC
Q 023871          150 TMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       150 ~~~air~r~gpv~L~l~R~~  169 (276)
                      ++..|+.-...|.|++.|..
T Consensus        78 a~~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          78 AVETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHHHHSCSEEEEEEECCC
T ss_pred             HHHHHHCCCCeEEEEEEeCC
Confidence            88899977788999999964

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.90  E-value=4.1e-09  Score=83.46  Aligned_cols=83  Identities=13%  Similarity=0.050  Sum_probs=66.4

Q ss_pred             cCCCcchhHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHH
Q 023871          189 NSGVISNRVREIQMQ--------------NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~--------------nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A  254 (276)
                      ..|++.+|+..+++.              .....+.+...  -..+.|..++++|+|++||..|++||+++|++.   .+
T Consensus        29 ~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---ka  103 (153)
T d2fbna1          29 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS--CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---KA  103 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HH
T ss_pred             HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHH--HHhhHHHHHHHhcccchhhhhhhccccccchhh---hh
Confidence            588999998888771              11112222211  235899999999999999999999999999995   69


Q ss_pred             HHHHhHHHHhcCChhHHHhhhC
Q 023871          255 SYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       255 ~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ||++++||..+|++++|+..|+
T Consensus       104 ~~~~g~~~~~lg~~~~A~~~~~  125 (153)
T d2fbna1         104 LYKLGVANMYFGFLEEAKENLY  125 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHHhHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998863

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=2.9e-09  Score=82.09  Aligned_cols=85  Identities=24%  Similarity=0.386  Sum_probs=68.7

Q ss_pred             ccccceEEEEecC---cceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           81 EEKYEEYEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        81 ~~~~~~y~V~l~K---PLGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +++.+...|+|.|   ||||.|..+.++ ++||..|.|||-|+++|.|++||+|+.|...    -..-..+.+++..|+.
T Consensus         5 ~~~~~~r~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~----~v~~~~~~ev~~~l~~   80 (102)
T d1tp5a1           5 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV----DLRNASHEQAAIALKN   80 (102)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTE----ECTTCCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEeCCCcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCe----EcCCCCHHHHHHHHHc
Confidence            3455668888876   689999877544 9999999999999999999999999998753    2233456788999998


Q ss_pred             ccCceEEEEeecC
Q 023871          157 RVGPLLMKMQKRY  169 (276)
Q Consensus       157 r~gpv~L~l~R~~  169 (276)
                      ..+++.|.++|+.
T Consensus        81 ~~~~v~L~v~~~~   93 (102)
T d1tp5a1          81 AGQTVTIIAQYKP   93 (102)
T ss_dssp             SCSEEEEEEEECH
T ss_pred             CCCeEEEEEEECC
Confidence            7888999998853

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.9e-09  Score=79.08  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .++.+++|+.+|+.|+|++||..|++||.++|++.   .+|+|+|.||.++|++++|+..+
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~   60 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---VLYSNRSAAYAKKGDYQKAYEDG   60 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch---hhhhcccccccccccccccchhh
Confidence            45567899999999999999999999999999996   68999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.80  E-value=1.1e-08  Score=81.33  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=66.2

Q ss_pred             cCCCcchhHHHHHHH--H---------HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHH
Q 023871          189 NSGVISNRVREIQMQ--N---------YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASY  256 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~--n---------Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~Y  256 (276)
                      ..|++.+|+..+++.  .         ..+..+++.. ..-+.+.|..++++|+|++||..|++||+++|++.   .+|+
T Consensus        39 ~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~  115 (169)
T d1ihga1          39 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---KALY  115 (169)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHH
T ss_pred             HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh---hHHH
Confidence            788999988777651  1         0111111222 23356789999999999999999999999999996   6899


Q ss_pred             HHhHHHHhcCChhHHHhhhC
Q 023871          257 NVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       257 N~AcCyaKLgq~~eAI~aLE  276 (276)
                      |++.||..+|++++|+..++
T Consensus       116 ~~g~~~~~l~~~~~A~~~~~  135 (169)
T d1ihga1         116 RRAQGWQGLKEYDQALADLK  135 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHccCHHHHHHHHH
Confidence            99999999999999998763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8e-09  Score=81.09  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ++++...++|+.+|+.|+|++|+..|++||.++|++.   .+|+|++.||.++|++++|+..++
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh---hhhhhhHHHHHhccccchHHHHHH
Confidence            4556677899999999999999999999999999985   689999999999999999998763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.7e-09  Score=78.90  Aligned_cols=61  Identities=15%  Similarity=0.080  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh----HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e----~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++++.|+.+|+.|+|++|+.+|++||.+.|++..    ...+++|++.||.++|++++|++.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y   69 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHH
Confidence            478899999999999999999999999988776532    3678999999999999999999875

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.5e-08  Score=78.22  Aligned_cols=81  Identities=25%  Similarity=0.414  Sum_probs=66.3

Q ss_pred             ceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.|+|+|+|   +||+.+..+.+     .++||..|.|+|-|+++|.|++||+|+.|...    -+.-..+-+++..|+.
T Consensus         8 ~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~----~v~~~~~~ev~~llk~   83 (110)
T d1um1a_           8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS----SLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSC----BCSSCCHHHHHHHHHT
T ss_pred             CEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCE----ECCCCCHHHHHHHHHc
Confidence            469999987   78999976533     37999999999999999999999999998653    3333455688999998


Q ss_pred             ccCceEEEEeecC
Q 023871          157 RVGPLLMKMQKRY  169 (276)
Q Consensus       157 r~gpv~L~l~R~~  169 (276)
                      -.+.+.|++.|+.
T Consensus        84 ~~~~v~l~v~r~~   96 (110)
T d1um1a_          84 GGKKMRFLVAKSD   96 (110)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            7888999998854

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.74  E-value=4.7e-09  Score=79.24  Aligned_cols=81  Identities=11%  Similarity=-0.002  Sum_probs=68.0

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ...|++++|+..+     +++-++... .+.++..|..+++.|+|++|+..|++||+++|++.   .+|+|+|.||..+|
T Consensus        27 ~~~g~~~~A~~~~-----~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~la~~y~~~g   98 (112)
T d1hxia_          27 LKLANLAEAALAF-----EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSHTNEH   98 (112)
T ss_dssp             HHTTCHHHHHHHH-----HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHH-----hhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc---cchHHHHHHHHHCC
Confidence            4678888885544     444444444 45578999999999999999999999999999996   68999999999999


Q ss_pred             ChhHHHhhhC
Q 023871          267 QVPLLLALIE  276 (276)
Q Consensus       267 q~~eAI~aLE  276 (276)
                      ++++|+++|+
T Consensus        99 ~~~~A~~~l~  108 (112)
T d1hxia_          99 NANAALASLR  108 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999999874

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-08  Score=76.08  Aligned_cols=79  Identities=27%  Similarity=0.445  Sum_probs=62.8

Q ss_pred             EEEEecC---cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           87 YEVEIEQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      ++|+|.|   +||+.+.-+       .+.++||..|.|||-|+++|.+++||+|+.+...    -+.-..+.+++..|+.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~~~~e~~~~lk~   78 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT----NLQDVRHEEAVASLKN   78 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE----ECTTCBHHHHHHHHHT
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCe----ecCCCCHHHHHHHHHc
Confidence            5677755   578888643       2348999999999999999999999999998653    2333456689999998


Q ss_pred             ccCceEEEEeecC
Q 023871          157 RVGPLLMKMQKRY  169 (276)
Q Consensus       157 r~gpv~L~l~R~~  169 (276)
                      -.+.+.|++.|+-
T Consensus        79 ~~~~v~L~v~Rpg   91 (92)
T d2fe5a1          79 TSDMVYLKVAKPG   91 (92)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCEEEEEEECCC
Confidence            7788999999874

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.4e-08  Score=77.00  Aligned_cols=82  Identities=21%  Similarity=0.403  Sum_probs=66.6

Q ss_pred             ceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      .-|+|+|+|   +||+.|..+.  .+++||..|.|||.|+++|.+++||+|+.+-..    -..-..+-+++..|+.-.+
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~----~v~~~~~~ev~~~l~~~~~   78 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSS----SLKGKPLSEAIHLLQMAGE   78 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTE----ECTTCCHHHHHHHHHTCCS
T ss_pred             EEEEEEEEECCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCC
Confidence            568999999   8999998653  358999999999999999999999999998642    2223344578888888788


Q ss_pred             ceEEEEeecCC
Q 023871          160 PLLMKMQKRYG  170 (276)
Q Consensus       160 pv~L~l~R~~~  170 (276)
                      .+.|++.|+..
T Consensus        79 ~v~l~v~r~~~   89 (95)
T d1n7ea_          79 TVTLKIKKQTD   89 (95)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEEECCC
Confidence            99999999754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.73  E-value=1.6e-08  Score=80.02  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-------------~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++..++++|+.+|+.|+|++|+..|++||.+.|....             ...+|+|+|.||.+++++++||+.+
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            345567789999999999999999999999987765321             1567999999999999999999865

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.3e-08  Score=76.35  Aligned_cols=80  Identities=23%  Similarity=0.372  Sum_probs=62.8

Q ss_pred             eEEEEecC---cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           86 EYEVEIEQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        86 ~y~V~l~K---PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      ..+|+|.|   +||+.+..+       .+.++||..|.|||-|+++|.+++||+|+.|...    -+.-..+-+++.+|+
T Consensus         2 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~s~~e~~~~l~   77 (93)
T d1rgra_           2 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV----DVREVTHSAAVEALK   77 (93)
T ss_dssp             EEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTE----ECSSSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCE----ECCCCCHHHHHHHHH
Confidence            35677764   688999643       2348999999999999999999999999998642    222235567899999


Q ss_pred             cccCceEEEEeecC
Q 023871          156 QRVGPLLMKMQKRY  169 (276)
Q Consensus       156 ~r~gpv~L~l~R~~  169 (276)
                      .-.+.+.|++.|+-
T Consensus        78 ~~~~~v~L~v~R~~   91 (93)
T d1rgra_          78 EAGSIVRLYVMRRK   91 (93)
T ss_dssp             HTTTEEEEEEECSC
T ss_pred             cCCCEEEEEEEeCC
Confidence            87889999999864

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.6e-08  Score=77.50  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=67.7

Q ss_pred             ceEEEEecCc---ceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQP---YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~KP---LGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      ..+.|+|+|.   ||+.+.-+.     +.++||..|.|||-|+++|.|++||+|+.|...    -+.-..+.+++..||.
T Consensus        29 ~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~----~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          29 TVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT----AMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             EEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSC----BGGGSCHHHHHHHHHT
T ss_pred             eEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCe----ecCCCcHHHHHHHHHc
Confidence            4578888874   899997542     348999999999999999999999999998753    3344466678889985


Q ss_pred             -ccCceEEEEeecCCCcc
Q 023871          157 -RVGPLLMKMQKRYGKME  173 (276)
Q Consensus       157 -r~gpv~L~l~R~~~~~~  173 (276)
                       ..++|.|++.|+.....
T Consensus       105 ~~~~~v~l~v~r~~~~~~  122 (130)
T d1i16a_         105 LPDGPVTIVIRRKSLQSK  122 (130)
T ss_dssp             SCSSEEEEEEEEESSCCC
T ss_pred             CCCCeEEEEEEcCCCCCC
Confidence             56789999999876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.71  E-value=9.7e-09  Score=80.93  Aligned_cols=61  Identities=13%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh---------HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e---------~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ....+.+|+..|..|+|++||..|++||++.|+.++         .+.+|+|++.||.++|++++|+..+
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~   78 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA   78 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhh
Confidence            334467899999999999999999999999987643         3678999999999999999999764

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.1e-08  Score=76.55  Aligned_cols=75  Identities=17%  Similarity=0.341  Sum_probs=62.1

Q ss_pred             EEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEE
Q 023871           88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM  163 (276)
Q Consensus        88 ~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L  163 (276)
                      .|+|.|    |||+.+..+.++++||..|.|||-|+++|.|++||.|+.+-..    -..-..+-.++..|+.-.+.|+|
T Consensus         4 ~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~----~v~~~~~~~~~~ll~~~~~~v~L   79 (88)
T d1kwaa_           4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI----SVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             EEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTE----EGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCE----ECCCCCHHHHHHHHHcCCCcEEE
Confidence            577777    9999999887889999999999999999999999999998642    22233455788888887788999


Q ss_pred             EEe
Q 023871          164 KMQ  166 (276)
Q Consensus       164 ~l~  166 (276)
                      ++-
T Consensus        80 ~i~   82 (88)
T d1kwaa_          80 KIV   82 (88)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.4e-08  Score=75.08  Aligned_cols=80  Identities=20%  Similarity=0.400  Sum_probs=62.1

Q ss_pred             ceEEEEecCc--ceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           85 EEYEVEIEQP--YGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~KP--LGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      +-++|+++|+  ||+.+..+.+     .++||..|.|||-|+++|.+++||+|+.|-..   .| .-..+.+++..|+.-
T Consensus         4 ei~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~---~v-~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           4 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR---SL-VGLSQERAAELMTRT   79 (92)
T ss_dssp             EEEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTE---EC-TTCCHHHHHHHHHSC
T ss_pred             eEEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCe---ec-CCCCHHHHHHHHHcC
Confidence            4577888776  5566654422     27999999999999999999999999998753   22 223566789999988


Q ss_pred             cCceEEEEeec
Q 023871          158 VGPLLMKMQKR  168 (276)
Q Consensus       158 ~gpv~L~l~R~  168 (276)
                      .++|.|++.|+
T Consensus        80 ~~~v~L~v~R~   90 (92)
T d1t2ma1          80 SSVVTLEVAKQ   90 (92)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEeC
Confidence            89999999995

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=2.9e-08  Score=74.71  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=65.1

Q ss_pred             ccceEEEEecC-----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        83 ~~~~y~V~l~K-----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.+..+|+|.|     .+|+.+..+. +.++||.+|.+||-|+++| +++||+|+.+-..    -..-...-.++..|+.
T Consensus         4 p~e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~----~v~~~t~~~~~~~l~~   78 (91)
T d1m5za_           4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHV----RTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHT
T ss_pred             CCceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCc-CCCCCEEEEECCE----ECCCCCHHHHHHHHHC
Confidence            45667888876     5889998764 4599999999999999999 9999999997642    2223344578889998


Q ss_pred             ccCceEEEEeecC
Q 023871          157 RVGPLLMKMQKRY  169 (276)
Q Consensus       157 r~gpv~L~l~R~~  169 (276)
                      ..+.+.|.+.|.+
T Consensus        79 ~~~~v~L~v~R~P   91 (91)
T d1m5za_          79 SGNKLDLVISRNP   91 (91)
T ss_dssp             STTEEEEEEEECC
T ss_pred             CCCEEEEEEEECc
Confidence            8889999999853

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-08  Score=77.00  Aligned_cols=80  Identities=19%  Similarity=0.409  Sum_probs=63.2

Q ss_pred             ceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           85 EEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      +.|+|+|.|   +||+.+.-+        .+.++||..|.|||-|+++|.+++||+|+.+...   .| .-..+.+++..
T Consensus         2 e~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~---~v-~~~~~~~~~~~   77 (94)
T d1wf8a1           2 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI---SL-VGVTQNFAATV   77 (94)
T ss_dssp             EEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTE---EC-BSCCHHHHHHH
T ss_pred             eEEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCE---EC-CCCCHHHHHHH
Confidence            568899976   588888532        2237999999999999999999999999998642   22 12345578899


Q ss_pred             hhcccCceEEEEeec
Q 023871          154 IRQRVGPLLMKMQKR  168 (276)
Q Consensus       154 ir~r~gpv~L~l~R~  168 (276)
                      |+.-.+++.|++.|+
T Consensus        78 l~~~~~~v~L~V~R~   92 (94)
T d1wf8a1          78 LRNTKGNVRFVIGRE   92 (94)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEeC
Confidence            998789999999885

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.69  E-value=4.3e-08  Score=78.21  Aligned_cols=85  Identities=15%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             cCCCcchhHHHHHHHH----------HhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871          189 NSGVISNRVREIQMQN----------YMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~n----------Ykk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN  257 (276)
                      ..|++.+|+...+...          ......+...... ..+.|..++++|+|++||..|++||.++|++.   .+|||
T Consensus        27 ~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~---~a~~~  103 (168)
T d1kt1a1          27 KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYR  103 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH---HHHHH
Confidence            6899999988776611          1111222222212 24789999999999999999999999999996   69999


Q ss_pred             HhHHHHhcCChhHHHhhhC
Q 023871          258 VACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aLE  276 (276)
                      ++-||..+|++++|+..++
T Consensus       104 ~~~~~~~l~~~~~A~~~~~  122 (168)
T d1kt1a1         104 RGEAQLLMNEFESAKGDFE  122 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999998763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=7.4e-09  Score=83.93  Aligned_cols=79  Identities=20%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ..|++++|     ...|+++.++... .+.+...|..+.+.|+|++|+..|++||.++|++.   .+|+|++.||..+|+
T Consensus        49 ~~g~~~~A-----~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          49 SLGLRALA-----RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGR  120 (259)
T ss_dssp             HTTCHHHH-----HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTC
T ss_pred             HCCCHHHH-----HHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh---hhHHHHHHHHHHHhh
Confidence            45555555     3455555555543 34455667777777777777777777777777664   467777777777777


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|++.+
T Consensus       121 ~~~A~~~~  128 (259)
T d1xnfa_         121 DKLAQDDL  128 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.2e-09  Score=85.46  Aligned_cols=78  Identities=9%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq  267 (276)
                      ...|++++++..+..     ...  ...+-|++.|..++++|+|++|+..|++||+++|++.   .+|+|++.||.++|+
T Consensus        16 ~~~~d~~~Al~~~~~-----i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~---~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          16 ADKKDWKGALDAFSA-----VQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---VAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHTTCHHHHHHHHHT-----SSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHh-----cCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHhhcc
Confidence            367888888766654     211  1123588999999999999999999999999999995   699999999999999


Q ss_pred             hhHHHhhh
Q 023871          268 VPLLLALI  275 (276)
Q Consensus       268 ~~eAI~aL  275 (276)
                      +++|+..+
T Consensus        86 ~~~A~~~~   93 (192)
T d1hh8a_          86 YDLAIKDL   93 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999764

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.2e-08  Score=76.07  Aligned_cols=80  Identities=20%  Similarity=0.364  Sum_probs=63.5

Q ss_pred             ceEEEEecC----cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      ..|.|+|.|    +|||.+..+.+    .++||..|.|||.|+++|.+++||+|+.+-..    -..-..+-+++..|+.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNI----RLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTE----EGGGCCHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCE----ECCCCCHHHHHHHHHc
Confidence            348888876    48999976422    37999999999999999999999999997752    1112245588999998


Q ss_pred             ccCceEEEEeec
Q 023871          157 RVGPLLMKMQKR  168 (276)
Q Consensus       157 r~gpv~L~l~R~  168 (276)
                      ..+.++|++.|.
T Consensus        86 ~~~~v~L~V~r~   97 (99)
T d1p1da2          86 CEDLVKLKIRKD   97 (99)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            888899999884

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.67  E-value=2.1e-08  Score=80.04  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ++++...+.|+++|+.|+|++|+..|++||.+.|...            ....++.|+|.||.+++++++||..+
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            4555667999999999999999999999996554421            12667999999999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.6e-08  Score=79.99  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.++..+++|+.+|+.|+|++|+..|++||.+.|...            ....+|.|+|.||.++|++++|+..+
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~   85 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC   85 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchh
Confidence            3456667999999999999999999999998877541            12567899999999999999999865

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.8e-08  Score=78.41  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             cCCCcchhHHHHHHHH----------HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871          189 NSGVISNRVREIQMQN----------YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN  257 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~n----------Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN  257 (276)
                      ..|+++.|+..++...          ......+.... .-..+.|..+++.|+|++|+..|++||.++|++.   .+|++
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---~a~~~  101 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---KGLSR  101 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch---hhhHH
Confidence            4688889888777611          01111111111 2235789999999999999999999999999985   68999


Q ss_pred             HhHHHHhcCChhHHHhhhC
Q 023871          258 VACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       258 ~AcCyaKLgq~~eAI~aLE  276 (276)
                      ++.||.++|++++|+..++
T Consensus       102 ~g~~~~~~g~~~~A~~~~~  120 (170)
T d1p5qa1         102 RGEAHLAVNDFELARADFQ  120 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHH
Confidence            9999999999999998763

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8e-09  Score=79.61  Aligned_cols=85  Identities=19%  Similarity=0.387  Sum_probs=69.4

Q ss_pred             ccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .++.|+|+|.|   +||+.+.-+.  +.++||..|.|+|-|+++|.|++||+|+.|...    -..-..+-+++..|+.-
T Consensus         9 ~~e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~----~v~~~s~~ev~~~l~~~   84 (103)
T d1wfva_           9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE----STRDMTHARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTE----ECSSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCE----ECCCCcHHHHHHHHHcC
Confidence            56889999986   6899998653  348999999999999999999999999998753    22233556789999987


Q ss_pred             cCceEEEEeecCCC
Q 023871          158 VGPLLMKMQKRYGK  171 (276)
Q Consensus       158 ~gpv~L~l~R~~~~  171 (276)
                      ...+.|++.|+.+.
T Consensus        85 ~~~v~l~v~R~~~s   98 (103)
T d1wfva_          85 GRRVRLLLKRGTGS   98 (103)
T ss_dssp             CSEECEEEECTTCS
T ss_pred             CCEEEEEEEECCCC
Confidence            88999999998764

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=3.7e-08  Score=73.89  Aligned_cols=78  Identities=19%  Similarity=0.341  Sum_probs=61.9

Q ss_pred             eEEEEecC----cceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           86 EYEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      -+.|+|.|    +||+.+..+.+        .++||..|.|||-|+++|.+++||+|+.+...    -+.-..+-+++..
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~----~v~~~~~~~~~~l   79 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK----DVRNSTEQAVIDL   79 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTE----ECTTCCHHHHHHH
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCE----ECCCCCHHHHHHH
Confidence            35788876    69999975421        16999999999999999999999999998643    2223355678899


Q ss_pred             hhcccCceEEEEee
Q 023871          154 IRQRVGPLLMKMQK  167 (276)
Q Consensus       154 ir~r~gpv~L~l~R  167 (276)
                      |+...+++.|+++|
T Consensus        80 l~~~~~~v~L~V~R   93 (94)
T d1ihja_          80 IKEADFKIELEIQT   93 (94)
T ss_dssp             HHHSCSEEEEEEEE
T ss_pred             HHcCCCEEEEEEEe
Confidence            99878889999987

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.4e-08  Score=80.88  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +++-+++.|+.+++.|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|++.+
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---EVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHhhhchHHHHHHHHHHhhhhh
Confidence            345578999999999999999999999999999996   58999999999999999999876

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.2e-08  Score=75.12  Aligned_cols=82  Identities=21%  Similarity=0.427  Sum_probs=64.6

Q ss_pred             eEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           86 EYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        86 ~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      .-.|+|.|   ||||.+..+.++++||..|.|+|-|+++| |++||+|+++-..   .| .-..+-++...|+.-.+.|.
T Consensus        20 ~r~v~l~k~~~glG~~i~gg~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~---~v-~~~~~~~~~~~l~~~~~~v~   94 (117)
T d1uita_          20 PRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGI---NL-RSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CEEEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTE---ET-TTCCHHHHHHHTTSCCSEEE
T ss_pred             CEEEEEEeCCCccCEEEEccCCCCEEEEEEecCChHHhCC-CCCCCEeeeECCc---cc-CCCCHHHHHHHHHCCCCeEE
Confidence            35677776   89999998889999999999999999887 9999999998753   11 11234467888887778899


Q ss_pred             EEEeecCCCc
Q 023871          163 MKMQKRYGKM  172 (276)
Q Consensus       163 L~l~R~~~~~  172 (276)
                      |.+.|.....
T Consensus        95 l~v~~~p~~~  104 (117)
T d1uita_          95 ILAQYNPHVH  104 (117)
T ss_dssp             EEECCCSCCC
T ss_pred             EEEEECCcce
Confidence            9998865443

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=4.9e-08  Score=73.39  Aligned_cols=80  Identities=19%  Similarity=0.333  Sum_probs=63.2

Q ss_pred             ceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      +.-+|+|.|    |||+.+..+.  +.++||..|.|+|-|+++|.+++||+|+.+...   .+ .-...-+++..|+.-.
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~---~v-~~~~~~~~~~~l~~~~   79 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE---DL-SSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTE---EC-TTCCHHHHHHHHHTCC
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCE---EC-CCCCHHHHHHHHHhCC
Confidence            345678876    6999998653  348999999999999999999999999998653   11 1224557888999888


Q ss_pred             CceEEEEeec
Q 023871          159 GPLLMKMQKR  168 (276)
Q Consensus       159 gpv~L~l~R~  168 (276)
                      +.+.|+++|.
T Consensus        80 ~~v~l~v~~~   89 (90)
T d1qava_          80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            8899999873

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.59  E-value=3.8e-08  Score=74.21  Aligned_cols=78  Identities=23%  Similarity=0.468  Sum_probs=59.5

Q ss_pred             EEEEecC----cceeEEeee----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh---
Q 023871           87 YEVEIEQ----PYGLKFAKG----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR---  155 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air---  155 (276)
                      ++|+|.|    .|||.+.-+    .++++||..|.|||-|+++|.+++||+|+++...   .+-. ..+.+++..+|   
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~---~l~~-~s~~eav~llk~~~   78 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDI---NFEN-MSNDDAVRVLRDIV   78 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCE---ECCC-CCHHHHHHHHHhcc
Confidence            5678877    499999754    3469999999999999999999999999998753   1111 13345566555   


Q ss_pred             cccCceEEEEeec
Q 023871          156 QRVGPLLMKMQKR  168 (276)
Q Consensus       156 ~r~gpv~L~l~R~  168 (276)
                      .+.+++.|++.|.
T Consensus        79 ~~~~~v~L~V~R~   91 (92)
T d2f0aa1          79 HKPGPIVLTVAKL   91 (92)
T ss_dssp             HSSSCEEEEEECC
T ss_pred             CCCCcEEEEEEeC
Confidence            4688999999883

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=6.9e-08  Score=77.08  Aligned_cols=84  Identities=13%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             ceEEEEecC-c--ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871           85 EEYEVEIEQ-P--YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (276)
Q Consensus        85 ~~y~V~l~K-P--LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g  159 (276)
                      +.++|+|.| +  ||+.+.++ +.++||..|.|||.|+++|.|++||+|+.|-..   . ..-..+.+++..||..  ..
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~~-~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~---~-v~~~~~~e~~~llr~~~~g~  101 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGHA---N-VLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSS---C-CTTCCHHHHHHHHTSCCSSC
T ss_pred             cEEEEEEeeCCCcEEEEEEec-CCcEEEEEECCCChHHHcCCCCCCCEEEEECCE---E-eEeccHHHHHHHHhCCCCCC
Confidence            578999987 3  55555543 447999999999999999999999999998653   2 2233455788888863  36


Q ss_pred             ceEEEEeecCCCcc
Q 023871          160 PLLMKMQKRYGKME  173 (276)
Q Consensus       160 pv~L~l~R~~~~~~  173 (276)
                      .|.|++.|.+.++.
T Consensus       102 ~v~L~v~R~~~~~p  115 (126)
T d1wifa_         102 VLQIKAYRGFLEIP  115 (126)
T ss_dssp             EEEEEEESSSSCCC
T ss_pred             EEEEEEEeCCCCCC
Confidence            89999999887654

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1e-07  Score=72.97  Aligned_cols=81  Identities=19%  Similarity=0.249  Sum_probs=59.9

Q ss_pred             eEEEEecC----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871           86 EYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp  160 (276)
                      .++|+|.|    .||+.+..+. ++++||..|.+||-|+++|.+++||+|+.|...    -..-..+-++...|+.-.+.
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~----~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR----PLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTE----ECTTSCHHHHHHHHHHSCSS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCc----CccCCCHHHHHHHHHcCCCC
Confidence            46778765    5889998764 458999999999999999999999999998642    11122455778888875556


Q ss_pred             eEEEEeecCC
Q 023871          161 LLMKMQKRYG  170 (276)
Q Consensus       161 v~L~l~R~~~  170 (276)
                      +.+.+.++.+
T Consensus        78 ~~~~l~~~~~   87 (112)
T d1qaua_          78 THVVLILRGP   87 (112)
T ss_dssp             SEEEEEEECC
T ss_pred             cEEEEEEeCC
Confidence            6565555443

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.6e-07  Score=72.06  Aligned_cols=83  Identities=24%  Similarity=0.453  Sum_probs=64.8

Q ss_pred             ceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           85 EEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      ....|.|.|   +||+.+.-+        .+.++||..|.|+|.|+++|.+++||+|+.|...   . ..-..+.+++..
T Consensus         7 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~---~-v~~~~~~ev~~~   82 (105)
T d1whaa_           7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV---D-VTEARHDHAVSL   82 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSC---B-CTTCCHHHHHHH
T ss_pred             CCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCE---E-cCCCcHHHHHHH
Confidence            346677765   689999643        2448999999999999999999999999998653   1 222355578999


Q ss_pred             hhcccCceEEEEeecCCC
Q 023871          154 IRQRVGPLLMKMQKRYGK  171 (276)
Q Consensus       154 ir~r~gpv~L~l~R~~~~  171 (276)
                      |+.-.+.|.|++.|+.+.
T Consensus        83 l~~~~~~v~l~v~R~~~~  100 (105)
T d1whaa_          83 LTAASPTIALLLEREAGS  100 (105)
T ss_dssp             HTSCCSCEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEECCCC
Confidence            998788999999997653

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-07  Score=72.67  Aligned_cols=85  Identities=15%  Similarity=0.389  Sum_probs=66.6

Q ss_pred             ceEEEEecC---cceeEEeee----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           85 EEYEVEIEQ---PYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      +.++|+|.|   +||+.+.-+          .+.++||..|.|+|.|+++|.+++||+|+.+-..   .| .-..+-+++
T Consensus         8 ~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~---~v-~~~t~~eav   83 (107)
T d1uhpa_           8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR---DL-SRATHDQAV   83 (107)
T ss_dssp             EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTE---EC-TTCCHHHHH
T ss_pred             CEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCE---EC-CCCCHHHHH
Confidence            568999976   478988643          2448999999999999999999999999998753   22 223456788


Q ss_pred             HHhhcccCceEEEEeecCCCcc
Q 023871          152 YTIRQRVGPLLMKMQKRYGKME  173 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~~~~~~  173 (276)
                      ..|+.-.+++.|.+.|+...++
T Consensus        84 ~~lk~~~~~v~l~v~r~~~~Ps  105 (107)
T d1uhpa_          84 EAFKTAKEPIVVQVLRRTSGPS  105 (107)
T ss_dssp             HHHHHCCSSEEEEEEECCSSCS
T ss_pred             HHHHhCCCcEEEEEEECCCCcC
Confidence            8999878899999988765443

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=9.8e-08  Score=71.92  Aligned_cols=78  Identities=21%  Similarity=0.400  Sum_probs=57.8

Q ss_pred             EEEEecCc----ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           87 YEVEIEQP----YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        87 y~V~l~KP----LGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      .+|+|.|.    |||.+.-+           ...++||..|.|+|-|+++|.+++||+|+++-..   .| .-..+.+++
T Consensus         3 r~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~---~v-~~~t~~ea~   78 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM---DL-RDASHEQAV   78 (96)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHH
T ss_pred             EEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCE---EC-CCCCHHHHH
Confidence            45666554    78887532           1238999999999999999999999999998653   12 122455788


Q ss_pred             HHhhcccCceEEEEeec
Q 023871          152 YTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~  168 (276)
                      .+|+.-.+.+.|+++|-
T Consensus        79 ~~lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          79 EAIRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHHHTCCSSEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEEc
Confidence            89998788999999884

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-07  Score=71.35  Aligned_cols=79  Identities=28%  Similarity=0.495  Sum_probs=62.1

Q ss_pred             cceEEEEecCc---ceeEEeeeC--------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871           84 YEEYEVEIEQP---YGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (276)
Q Consensus        84 ~~~y~V~l~KP---LGl~f~e~~--------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~  152 (276)
                      .++++|+|.|-   +|+.+.-+.        +.++||..|.|||-|+++| +++||+|+.+-..   .+ .--.+..++.
T Consensus         7 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~---~v-~~~~~~~~~~   81 (97)
T d1x5qa1           7 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV---AL-QGAEHHEAVE   81 (97)
T ss_dssp             CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC-TTCCHHHHHH
T ss_pred             CeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCE---EC-CCCCHHHHHH
Confidence            46788999886   888886432        2389999999999999999 9999999998753   22 2233457888


Q ss_pred             HhhcccCceEEEEee
Q 023871          153 TIRQRVGPLLMKMQK  167 (276)
Q Consensus       153 air~r~gpv~L~l~R  167 (276)
                      .|+...+.+.|++.|
T Consensus        82 ~l~~~~~~v~l~v~R   96 (97)
T d1x5qa1          82 ALRGAGTAVQMRVWR   96 (97)
T ss_dssp             HHHSCCSEEEEEEEE
T ss_pred             HHhCCCCEEEEEEEE
Confidence            898877788999988

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-07  Score=70.08  Aligned_cols=76  Identities=20%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-Cce
Q 023871           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPL  161 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~-gpv  161 (276)
                      .+|+|.|    ++|+.|+.. ++++||..|.+||-|+++| +++||+|+.+-..   .+ ......++...|+... ..+
T Consensus         4 r~v~l~k~~~~~lG~~l~~~-~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~---~v-~~~~~~~v~~~lk~~~~~~v   77 (85)
T d1w9ea1           4 REVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE---NC-AGWSSDKAHKVLKQAFGEKI   77 (85)
T ss_dssp             EEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EC-TTCCHHHHHHHHHHCCSSEE
T ss_pred             EEEEEEeCCCCCEeEEEEeC-CCCEEEEEECCCCHHHHcC-CCCccEEEEECCE---Ee-CCCCHHHHHHHHhcCCCCEE
Confidence            3566666    899999876 5689999999999999999 9999999998653   11 1224456788888554 468


Q ss_pred             EEEEeec
Q 023871          162 LMKMQKR  168 (276)
Q Consensus       162 ~L~l~R~  168 (276)
                      .|.++++
T Consensus        78 ~l~v~~r   84 (85)
T d1w9ea1          78 TMTIRDR   84 (85)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            8888764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.52  E-value=6.7e-08  Score=72.70  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      ++++.|..+++.|+|++|+..|++||.++|++.   .+|++++.||.+++++++|+..++
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~   74 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAENEKDGLAIIALN   74 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccc---hhhhhhhhhhhhhhhHHHhhcccc
Confidence            467899999999999999999999999999985   699999999999999999998763

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.8e-08  Score=71.47  Aligned_cols=77  Identities=16%  Similarity=0.359  Sum_probs=62.2

Q ss_pred             ceEEEEecC---cceeEEeee---C--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871           85 EEYEVEIEQ---PYGLKFAKG---R--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~---~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~  156 (276)
                      +.++|+|.|   +||+.+..+   .  +.++||..|.++|.|+++|.+++||+|+.+-.    .-+.-..+.++...|++
T Consensus         2 ~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg----~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1           2 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG----QSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETT----EECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECC----EECCCCCHHHHHHHHHc
Confidence            357889987   799999753   1  23899999999999999999999999999764    34444566688999998


Q ss_pred             ccCceEEEE
Q 023871          157 RVGPLLMKM  165 (276)
Q Consensus       157 r~gpv~L~l  165 (276)
                      ..+++.|++
T Consensus        78 ~~~~v~L~V   86 (88)
T d2fnea1          78 TKGTVTLMV   86 (88)
T ss_dssp             CCSSEEEEE
T ss_pred             CCCcEEEEE
Confidence            888898875

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.1e-08  Score=71.25  Aligned_cols=77  Identities=25%  Similarity=0.378  Sum_probs=60.4

Q ss_pred             EEEEecC--cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           87 YEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        87 y~V~l~K--PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      |+|++.+  |+|+.+.-+.  +.++||..|.||+-|+++| +++||+|+.+...    -..-..+.+++..|+.-.+.+.
T Consensus         3 ~~V~l~~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~----~v~~~s~~ev~~~i~~~~~~v~   77 (85)
T d1rgwa_           3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGV----NTDTMTHLEAQNKIKSASYNLS   77 (85)
T ss_dssp             EEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTE----ECTTCCHHHHHHHHTTCSSCEE
T ss_pred             EEEEecCCCCCCEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCEEE
Confidence            7788865  5788887653  3479999999999999876 9999999998653    2223355688999998778899


Q ss_pred             EEEeec
Q 023871          163 MKMQKR  168 (276)
Q Consensus       163 L~l~R~  168 (276)
                      |.++|.
T Consensus        78 L~V~R~   83 (85)
T d1rgwa_          78 LTLQKS   83 (85)
T ss_dssp             EEEESC
T ss_pred             EEEEEC
Confidence            999884

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.3e-07  Score=70.18  Aligned_cols=82  Identities=22%  Similarity=0.425  Sum_probs=62.5

Q ss_pred             cceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           84 YEEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        84 ~~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      +...+|+|.|    +||+.+..+.  +-++||..|.++|-|+++| +++||+|++|-..   .+- -..+.+++..||. 
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~---~v~-~~~~~ev~~llk~-   87 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDV---DFQ-DIEHSKAVEILKT-   87 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECS-SCCHHHHHHHHHH-
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEECCE---ECC-CCCHHHHHHHHhc-
Confidence            3446778776    4788887653  3389999999999999999 9999999998753   121 2245578888886 


Q ss_pred             cCceEEEEeecCCC
Q 023871          158 VGPLLMKMQKRYGK  171 (276)
Q Consensus       158 ~gpv~L~l~R~~~~  171 (276)
                      ++.+.|++.|..|+
T Consensus        88 ~~~v~l~V~~~~~P  101 (104)
T d1wi2a_          88 AREISMRVRFFSGP  101 (104)
T ss_dssp             SSSEEEEEECCCCS
T ss_pred             CCeEEEEEEECCCC
Confidence            56899999887765

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.3e-07  Score=75.43  Aligned_cols=84  Identities=23%  Similarity=0.393  Sum_probs=62.5

Q ss_pred             cceEEEEecCc----ceeEEeee---C---CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871           84 YEEYEVEIEQP----YGLKFAKG---R---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (276)
Q Consensus        84 ~~~y~V~l~KP----LGl~f~e~---~---dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a  153 (276)
                      ...++|+|.|.    |||.+.-+   .   +.++||..|.|||-|+++|.|++||+|+.|-..    -..-..+-+++..
T Consensus        24 ~~~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~~~~e~~~~   99 (127)
T d1wg6a_          24 QLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE----TLLGKSNHEAMET   99 (127)
T ss_dssp             EEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTE----ESTTSCHHHHHHH
T ss_pred             cEEEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCE----ECCCCCHHHHHHH
Confidence            34567778664    99999743   2   238999999999999999999999999998652    1112234466777


Q ss_pred             hhcc-------cCceEEEEeecCCC
Q 023871          154 IRQR-------VGPLLMKMQKRYGK  171 (276)
Q Consensus       154 ir~r-------~gpv~L~l~R~~~~  171 (276)
                      ||.-       .++|.|++.|..++
T Consensus       100 lr~a~~~~~~~~~~V~L~V~R~~~p  124 (127)
T d1wg6a_         100 LRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             HHhcccccCCCCCEEEEEEeeCCCC
Confidence            7642       57899999998664

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-07  Score=71.85  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             EEEEecC----cceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           87 YEVEIEQ----PYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~~---dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      +.|+|.|    +|||.+..+.   .+++||..|.|+|-|+++|.|++||+|+.|-..    -..-..+-+++..|+.-.+
T Consensus        17 ~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~~~~~v~~~l~~~~~   92 (117)
T d1v62a_          17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT----SMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             EEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTE----ETTSCCHHHHHHHHHSCSS
T ss_pred             EEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCE----ecCCCCHHHHHHHHHcCCC
Confidence            6788876    5899998753   348999999999999999999999999998653    2223355678889998778


Q ss_pred             ceEEEEeecCCC
Q 023871          160 PLLMKMQKRYGK  171 (276)
Q Consensus       160 pv~L~l~R~~~~  171 (276)
                      .+.|++.|....
T Consensus        93 ~v~l~v~~~~~~  104 (117)
T d1v62a_          93 KVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCBTTB
T ss_pred             cEEEEEEECCCC
Confidence            899999886654

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.8e-07  Score=71.58  Aligned_cols=84  Identities=18%  Similarity=0.385  Sum_probs=63.9

Q ss_pred             ccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .+++++|+|.|   +||+.+.-+.  ++++||..|.|+|-|+++|.|++||+|++|-..   .| .-..+.+++.+|+.-
T Consensus         7 ~~~~~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~---~v-~~~t~~e~~~~l~~~   82 (103)
T d1uepa_           7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI---PV-AGKTHRYVIDLMHHA   82 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTE---EC-TTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCE---EC-CCCCHHHHHHHHHhC
Confidence            45778888876   5889997543  447999999999999999999999999998753   11 123455788888843


Q ss_pred             --cCceEEEEeecCC
Q 023871          158 --VGPLLMKMQKRYG  170 (276)
Q Consensus       158 --~gpv~L~l~R~~~  170 (276)
                        ...|.|.+.|...
T Consensus        83 ~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          83 ARNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHHTEEEEEEEEECC
T ss_pred             CCCCEEEEEEEeCCC
Confidence              4568898888643

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=1.4e-07  Score=71.17  Aligned_cols=81  Identities=21%  Similarity=0.400  Sum_probs=63.8

Q ss_pred             eEEEEec--CcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l~--KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      .++|++.  .|+|+.+.-+.|.  .+||..|.|++-|+++| +++||+|+.|...    -..-..+-+++..|+.-.++|
T Consensus         7 ~~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~----~v~~~~~~~~~~~l~~~~~~v   81 (94)
T d1vb7a_           7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQ----SAENMLHAEAQSKIRQSASPL   81 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHTCCSSE
T ss_pred             eEEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCeE
Confidence            3666665  5788999877654  79999999999999877 9999999998753    222234457888999878999


Q ss_pred             EEEEeecCCC
Q 023871          162 LMKMQKRYGK  171 (276)
Q Consensus       162 ~L~l~R~~~~  171 (276)
                      .|++.|+.++
T Consensus        82 ~L~V~R~~~p   91 (94)
T d1vb7a_          82 RLQLDRSSGP   91 (94)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999997664

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.3e-07  Score=68.24  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEE
Q 023871           94 PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM  165 (276)
Q Consensus        94 PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l  165 (276)
                      +|||.+.++.+    +++||..|.|||-|+++|.+++||+|+.+...    -.--..+-+++..|+.-...+.++|
T Consensus        11 ~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~----~v~~~s~~e~~~~l~~~~~~~~v~L   82 (85)
T d1x45a1          11 ILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT----SLVGLPLSTCQSIIKGLKNQSRVKL   82 (85)
T ss_dssp             CCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTE----ECTTCCHHHHHHHHHTTTTCSEEEE
T ss_pred             ccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCE----ECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            79999976533    37999999999999999999999999997753    2233455678888886444444444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=77.82  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++|+.     .|+++-++... .+.++..|..++..|+|++|+..|++|++++|++.   .+|++++.||.
T Consensus        27 ~~~~~~g~~~~A~~-----~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~   98 (323)
T d1fcha_          27 LRRLQEGDLPNAVL-----LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ---TALMALAVSFT   98 (323)
T ss_dssp             HHHHHTTCHHHHHH-----HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc---ccccccccccc
Confidence            34457777777744     44455555544 45678889999999999999999999999999885   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .+|++++|++.+
T Consensus        99 ~~~~~~~A~~~~  110 (323)
T d1fcha_          99 NESLQRQACEIL  110 (323)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             ccccccccccch
Confidence            999999998876

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.9e-07  Score=72.14  Aligned_cols=73  Identities=29%  Similarity=0.463  Sum_probs=58.6

Q ss_pred             cceeEEeee-----CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEe
Q 023871           94 PYGLKFAKG-----RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ  166 (276)
Q Consensus        94 PLGl~f~e~-----~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~  166 (276)
                      .|||.+.-+     .+|  ++||..|.|+|-|+++|.+++||+|+.|..    .-+.-..+.+++..|+...+.+.|++.
T Consensus        31 glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg----~~v~~~s~~e~~~~i~~~~~~v~l~v~  106 (117)
T d1ujda_          31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNG----IPLTSKTYEEVQSIISQQSGEAEICVR  106 (117)
T ss_dssp             SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETT----EECTTCCHHHHHHHHSCCSSCEEEEEE
T ss_pred             ccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECC----EECCCCcHHHHHHHHHcCCCeEEEEEE
Confidence            389998633     223  799999999999999999999999999764    333344666889999987788999999


Q ss_pred             ecCC
Q 023871          167 KRYG  170 (276)
Q Consensus       167 R~~~  170 (276)
                      |...
T Consensus       107 r~~~  110 (117)
T d1ujda_         107 LDLN  110 (117)
T ss_dssp             SSCC
T ss_pred             ECCC
Confidence            9754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.8e-07  Score=76.82  Aligned_cols=83  Identities=14%  Similarity=0.032  Sum_probs=66.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ..-...|++++++..++     ++.++... .+-++..|..+++.|+|++|+..|++||+++|++.   .+|+|++.||.
T Consensus       180 ~~~~~~~~~~~A~~~~~-----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~  251 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFT-----AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---RSRYNLGISCI  251 (323)
T ss_dssp             HHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccc-----cccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH---HHHHHHHHHHH
Confidence            34456777777755544     33333333 45577999999999999999999999999999986   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus       252 ~~g~~~~A~~~~  263 (323)
T d1fcha_         252 NLGAHREAVEHF  263 (323)
T ss_dssp             HHTCHHHHHHHH
T ss_pred             HCCCHHHHHHHH
Confidence            999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.3e-07  Score=75.90  Aligned_cols=85  Identities=14%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------H
Q 023871          186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------S  251 (276)
Q Consensus       186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-------------~  251 (276)
                      .-...|++++|     ...|+++.++... ...+++.|..++++|+|++|+..|++||...|.+..             .
T Consensus        45 ~~~~~g~~~~A-----~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~  119 (192)
T d1hh8a_          45 MYTILKNMTEA-----EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA  119 (192)
T ss_dssp             HHHHTTCHHHH-----HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEH
T ss_pred             HHHHcCCchhH-----HHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccch
Confidence            33477888888     4567777777666 355789999999999999999999999977665421             1


Q ss_pred             HHHHHHHhHHHHhcCChhHHHhhh
Q 023871          252 SVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       252 a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..++||+|.||.++|++++|++.|
T Consensus       120 ~e~~~n~a~~~~~~~~~~~A~~~l  143 (192)
T d1hh8a_         120 CEVLYNIAFMYAKKEEWKKAEEQL  143 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            467999999999999999999876

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.2e-07  Score=71.60  Aligned_cols=84  Identities=20%  Similarity=0.355  Sum_probs=63.6

Q ss_pred             ceEEEEecC-----cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871           85 EEYEVEIEQ-----PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (276)
Q Consensus        85 ~~y~V~l~K-----PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air  155 (276)
                      +..+|+|.|     .|||.+.-+.|    .+|||..|.|||-|+++|.+++||+|+.+-..   .|   .++-.+...++
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~---~v---~~~~~~~~~l~   92 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI---EV---QNREEAVALLT   92 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSC---BC---CSHHHHHHHHT
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCE---EC---CCHHHHHHHHh
Confidence            445677766     48999976433    38999999999999999999999999998753   33   23445555666


Q ss_pred             c-ccCceEEEEeecCCCccc
Q 023871          156 Q-RVGPLLMKMQKRYGKMEQ  174 (276)
Q Consensus       156 ~-r~gpv~L~l~R~~~~~~~  174 (276)
                      . +.+.|.|.+.|+......
T Consensus        93 ~~~~~~v~l~v~r~~~~~~~  112 (124)
T d1wh1a_          93 SEENKNFSLLIARPELQLDE  112 (124)
T ss_dssp             CSSCCSCCEEEEECSSCCCC
T ss_pred             hCCCCcEEEEEEeCCCcccc
Confidence            4 467899999998877653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.9e-07  Score=71.48  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh----HHHHHHHHhHHHH
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYS  263 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e----~a~A~YN~AcCya  263 (276)
                      ..|++++|+     ..|.++.++.+. ..-+.+.|+.+++.|+|++|+..|++||+++|++..    .+.+|++++.|+.
T Consensus        16 ~~~~y~~Ai-----~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          16 KKKDFDTAL-----KHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHH-----HHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            567777774     455666666655 344678999999999999999999999999988643    3678999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      .++++++|++.+
T Consensus        91 ~~~~~~~A~~~~  102 (128)
T d1elra_          91 KEEKYKDAIHFY  102 (128)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            999999999875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.4e-07  Score=73.02  Aligned_cols=56  Identities=16%  Similarity=0.050  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +...|..+++.|+|++|+..|++||+++|++.   .+|+|+|.||.++|++++|+..++
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFA---AAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45677888999999999999999999999985   689999999999999999998763

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=8.4e-07  Score=69.78  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=58.6

Q ss_pred             EecCcceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc----cCceE
Q 023871           90 EIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR----VGPLL  162 (276)
Q Consensus        90 ~l~KPLGl~f~e~~---dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r----~gpv~  162 (276)
                      .-+.+|||.+.-+.   .|++||..|.|||-|+++|.|++||+|+.|-..   .|- -..+.+++..|+.-    ...|.
T Consensus        25 ~~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~---~v~-~~s~~e~~~~l~~~~~~~~~~V~  100 (118)
T d1v6ba_          25 KKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK---IVT-DYTLAEAEAALQKAWNQGGDWID  100 (118)
T ss_dssp             ESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSC---BCT-TCBHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCE---ECC-CCcHHHHHHHHHhcccCCCCEEE
Confidence            33568999998764   358999999999999999999999999998753   221 12344667777632    44589


Q ss_pred             EEEeecCCC
Q 023871          163 MKMQKRYGK  171 (276)
Q Consensus       163 L~l~R~~~~  171 (276)
                      |++.|.+.+
T Consensus       101 L~v~r~pp~  109 (118)
T d1v6ba_         101 LVVAVCPPK  109 (118)
T ss_dssp             EEEECCCSC
T ss_pred             EEEEeCCCC
Confidence            999997543

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.33  E-value=3.4e-07  Score=69.55  Aligned_cols=71  Identities=23%  Similarity=0.535  Sum_probs=55.3

Q ss_pred             CcceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           93 QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        93 KPLGl~f~e~~-----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      +|||+.+..+.           +.++||..|.|||.|+++|.+++||+|+.+...   .| .-..+-+++..|+.-.+.+
T Consensus        15 ~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~---~v-~~~~~~~~~~~l~~~~~~v   90 (98)
T d1rzxa_          15 KPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGI---EV-AGKTLDQVTDMMVANSSNL   90 (98)
T ss_dssp             SCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTCTEE
T ss_pred             CcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCE---EC-CCCCHHHHHHHHHcCCCeE
Confidence            48999887542           227999999999999999999999999998653   22 2234557888888777889


Q ss_pred             EEEEee
Q 023871          162 LMKMQK  167 (276)
Q Consensus       162 ~L~l~R  167 (276)
                      .|++..
T Consensus        91 ~l~v~p   96 (98)
T d1rzxa_          91 IITVKP   96 (98)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            988764

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=8.7e-07  Score=68.24  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             cceEEEEecC----cceeEEeeeC---------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           84 YEEYEVEIEQ----PYGLKFAKGR---------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        84 ~~~y~V~l~K----PLGl~f~e~~---------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      .+.++|+|.|    ++|+.+.-+.         ..++||..|.|||-|+++|.+++||.|+.|-..    -..-..+-++
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~~~~ev   84 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQ----SIINMPHADI   84 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTB----CTTTSCHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCc----ccCCCcHHHH
Confidence            3668888876    5888886542         226999999999999999999999999998642    2222244578


Q ss_pred             HHHhhcccCceEEEEeecC
Q 023871          151 MYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~~  169 (276)
                      +..||.-.+.|.|++.|+.
T Consensus        85 ~~ll~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          85 VKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHHHTTTEEEEEECCCS
T ss_pred             HHHHHcCCCeEEEEEEeCC
Confidence            8899976788999998853

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.32  E-value=1.3e-06  Score=68.28  Aligned_cols=82  Identities=12%  Similarity=-0.019  Sum_probs=63.4

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-------h
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-------------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT-------P  248 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-------------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~-------~  248 (276)
                      ..|++++++.     .|.++-++...             +.-+.+.|..++++|+|++|+..|++||.+.|+       .
T Consensus        21 ~~g~y~~Ai~-----~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          21 VAGEYDEAAA-----NCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHTCHHHHHH-----HHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HcCCHHHHHH-----HHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            5677777754     45555554432             334568999999999999999999999977553       2


Q ss_pred             h-hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          249 E-ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       249 ~-e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      . ....+|+|++.||.++|++++|+.++
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~  123 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEF  123 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            2 23678999999999999999999875

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=66.46  Aligned_cols=80  Identities=19%  Similarity=0.411  Sum_probs=61.5

Q ss_pred             eEEEEe----cCcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           86 EYEVEI----EQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        86 ~y~V~l----~KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      +..|.|    .++||+.+.-+.++  ++||..|.+||-|+++| +++||.|+.|...    -+.-..+.+++..|+. ++
T Consensus         9 ~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~----~v~~~~~~~v~~~lk~-~~   82 (101)
T d1x5na1           9 EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV----DFSNLDHKEAVNVLKS-SR   82 (101)
T ss_dssp             SEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTE----ETTSCCTTHHHHHHHH-CS
T ss_pred             cEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEECCE----ECCCCCHHHHHHHHhC-CC
Confidence            355555    45799999877654  89999999999999998 9999999998753    2233356778888886 56


Q ss_pred             ceEEEEeecCCC
Q 023871          160 PLLMKMQKRYGK  171 (276)
Q Consensus       160 pv~L~l~R~~~~  171 (276)
                      ++.|.+.|+-|.
T Consensus        83 ~~~l~v~~~~g~   94 (101)
T d1x5na1          83 SLTISIVAAAGR   94 (101)
T ss_dssp             SEEEEECSSTTT
T ss_pred             CEEEEEEECCCC
Confidence            788888876553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-06  Score=71.68  Aligned_cols=83  Identities=13%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871          185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya  263 (276)
                      ...-..|++++|++.+     ++..++... .+-++..|..+++.|+|++|+..|++||+++|++.   .+|++++.||.
T Consensus         7 ~~~~~~G~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~   78 (388)
T d1w3ba_           7 HREYQAGDFEAAERHC-----MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA---EAYSNLGNVYK   78 (388)
T ss_dssp             HHHHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHhh
Confidence            3344567777775444     344333322 34467889999999999999999999999999985   58999999999


Q ss_pred             hcCChhHHHhhh
Q 023871          264 KLNQVPLLLALI  275 (276)
Q Consensus       264 KLgq~~eAI~aL  275 (276)
                      ++|++++|+..+
T Consensus        79 ~~g~~~~A~~~~   90 (388)
T d1w3ba_          79 ERGQLQEAIEHY   90 (388)
T ss_dssp             HHTCHHHHHHHH
T ss_pred             hhcccccccccc
Confidence            999999999865

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.6e-07  Score=68.23  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             ceEEEEecC----cceeEEeee---CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           85 EEYEVEIEQ----PYGLKFAKG---RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~---~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      ..+.|+|.|    +||+.+..+   .++++||..|.|||-|+++|.+++||+|++|...    -..-..+-+++..|+.-
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~----~v~~~~~~ea~~~l~~~   83 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK----SLKGTTHHDALAILRQA   83 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTE----ECSSCCHHHHHHHHHHT
T ss_pred             CcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCE----ecCCCCHHHHHHHHHcC
Confidence            446677754    589999754   3569999999999999999999999999998653    12223456788889876


Q ss_pred             cCceEEEEeecCCC
Q 023871          158 VGPLLMKMQKRYGK  171 (276)
Q Consensus       158 ~gpv~L~l~R~~~~  171 (276)
                      .+.+.+.+.|+...
T Consensus        84 ~~~~~l~v~~r~~~   97 (107)
T d1x6da1          84 REPRQAVIVTRKLT   97 (107)
T ss_dssp             TSSSEEEEEEECCC
T ss_pred             CCCEEEEEEECCCC
Confidence            66666665554443

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=4.9e-07  Score=69.06  Aligned_cols=68  Identities=22%  Similarity=0.399  Sum_probs=55.9

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEE
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM  165 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l  165 (276)
                      .|||+.|.. .++++||..|.|||-|+++|.|++||.|+.+...    -..-..+.++...|+...++|.|++
T Consensus        30 ~~lG~~v~~-~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~----~v~~~~~~~~~~ll~~~~~~v~L~v   97 (100)
T d1va8a1          30 IPLGATVRN-EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGI----EIRGKDVNEVFDLLSDMHGTLTFVL   97 (100)
T ss_dssp             CCCCEEEEE-CSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTE----ECTTCCHHHHHHHHHHCCEEEEEEE
T ss_pred             CCccEEEEe-cCCCEEEEEECCCChhhhhcccCccCEEEEECCE----EEcCCCHHHHHHHHHcCCCeEEEEE
Confidence            479999965 4568999999999999999999999999998753    2223356689999998888888876

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.8e-06  Score=68.48  Aligned_cols=78  Identities=22%  Similarity=0.451  Sum_probs=60.0

Q ss_pred             ceEEEEecC----cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~  158 (276)
                      +++.|+|.|    +||+.+.-+.+.  ++||..|.|||.|+++| +++||+|+.|-..    -..--.+-+++..|+. +
T Consensus        20 ~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~----~v~~~s~~evv~~lr~-~   93 (128)
T d1uf1a_          20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGR----SFLNILHDEAVRLLKS-S   93 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTE----ECSSCCHHHHHHHHTT-C
T ss_pred             CeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHhc-C
Confidence            557788754    689999865433  89999999999999999 9999999998653    1112244578888986 6


Q ss_pred             CceEEEEeec
Q 023871          159 GPLLMKMQKR  168 (276)
Q Consensus       159 gpv~L~l~R~  168 (276)
                      +.+.|++.|.
T Consensus        94 ~~v~l~v~~~  103 (128)
T d1uf1a_          94 RHLILTVKDV  103 (128)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEEC
Confidence            7888988765

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.4e-06  Score=66.41  Aligned_cols=80  Identities=23%  Similarity=0.436  Sum_probs=61.4

Q ss_pred             ccceEEEEecC----cceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871           83 KYEEYEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (276)
Q Consensus        83 ~~~~y~V~l~K----PLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~  150 (276)
                      -.+.|+|+|.|    ++|+.+..+.+        .++||..|.|||-|+  +.+++||+|+.+...    -+.--.+-.+
T Consensus         5 ~~e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~----~v~~~~~~ev   78 (104)
T d2csja1           5 IWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGT----PMEDVLHSFA   78 (104)
T ss_dssp             EEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSC----BCBTCCHHHH
T ss_pred             cCccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCE----ECCCCCHHHH
Confidence            35678899887    48899865432        379999999999886  449999999998653    3333355578


Q ss_pred             HHHhhcccCceEEEEeec
Q 023871          151 MYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       151 ~~air~r~gpv~L~l~R~  168 (276)
                      ...|+.....+.|++.|+
T Consensus        79 ~~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          79 VQQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             HHHHHHSCSEEEEEEEEE
T ss_pred             HHHHHcCCCEEEEEEEeC
Confidence            888887678899999985

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.7e-06  Score=64.88  Aligned_cols=72  Identities=19%  Similarity=0.361  Sum_probs=57.2

Q ss_pred             CcceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871           93 QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus        93 KPLGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      .++|+.+..+ .+.++||..|.|||-|+++| |++||+|+.+-..    -..--..-++...|+.-.+.+.|++.|+-
T Consensus        14 ~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~----~v~~~t~~e~~~ll~~~~~~v~L~v~~~~   86 (91)
T d1g9oa_          14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGE----NVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             TBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CeeeEEEEecCCCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCeEEEEEECCC
Confidence            5789998766 34599999999999999999 9999999998753    22222444788899987888999987754

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.3e-06  Score=64.64  Aligned_cols=83  Identities=22%  Similarity=0.434  Sum_probs=61.7

Q ss_pred             ccccceEEEEecC--cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871           81 EEKYEEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG  148 (276)
Q Consensus        81 ~~~~~~y~V~l~K--PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g  148 (276)
                      +...+++.|+++|  .||+.+.-+.          +.+|||..|.|||.|++  .+++||+|+++...    -..-....
T Consensus         7 ~~~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~----~v~~~t~~   80 (103)
T d2h3la1           7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGY----SFINIEHG   80 (103)
T ss_dssp             CCEEEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTE----ECSSCCHH
T ss_pred             ccccEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCE----ECCCCCHH
Confidence            3445667777766  4678886442          35899999999999986  49999999998753    11122445


Q ss_pred             hHHHHhhcccCceEEEEeecC
Q 023871          149 RTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       149 ~~~~air~r~gpv~L~l~R~~  169 (276)
                      +++..|+.-.+.+.|++.|+.
T Consensus        81 eav~~l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          81 QAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHHHHHCCSEEEEEEEEEE
T ss_pred             HHHHHHHhCCCeEEEEEEEEC
Confidence            788899987788999999974

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=9.1e-07  Score=69.81  Aligned_cols=60  Identities=17%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------------~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      +.....|+.+|+.|+|++|+..|++||.+.+..             +....+++|+|.||.++|++++||..+
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            344578999999999999999999999765532             123678999999999999999999864

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.5e-06  Score=67.28  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             ccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871           83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (276)
Q Consensus        83 ~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r  157 (276)
                      .-+.++|+|.|   +||+.+.-+.  ++++||..|.|+|-|+++|.|++||+|+.|-..    -..-..+-++...|+.-
T Consensus        17 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~----~v~~~t~~eav~~l~~~   92 (123)
T d1ueqa_          17 KGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV----CVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTE----ECTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEEEEECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCE----ECCCCCHHHHHHHHHcC
Confidence            34667888765   7889998753  459999999999999999999999999998753    11122345677788853


Q ss_pred             -c-CceEEEEeecCCC
Q 023871          158 -V-GPLLMKMQKRYGK  171 (276)
Q Consensus       158 -~-gpv~L~l~R~~~~  171 (276)
                       . ..|.|.+.|....
T Consensus        93 ~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          93 PIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CTTCEEEEEEEESCCC
T ss_pred             CCCCEEEEEEEcCCCC
Confidence             3 4589999996443

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.2e-06  Score=67.63  Aligned_cols=72  Identities=25%  Similarity=0.364  Sum_probs=56.6

Q ss_pred             CcceeEEeee---CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEE
Q 023871           93 QPYGLKFAKG---RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKM  165 (276)
Q Consensus        93 KPLGl~f~e~---~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l  165 (276)
                      .+||+.+.-+   ..|  ++||..|.|||-|+++|.+++||+|+.+-..    -+.-..+.+++..|+.  ....+.|.+
T Consensus        30 ~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~----~~~~~t~~ea~~~l~~~~~~~~v~l~v  105 (108)
T d2cssa1          30 ALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK----PLPGATNEEVYNIILESKSEPQVEIIV  105 (108)
T ss_dssp             SCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSC----BCTTSCHHHHHHHHHHGGGCSCEEEEE
T ss_pred             CCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCE----ECCCCCHHHHHHHHHhCCCCCEEEEEE
Confidence            3699999654   223  8999999999999999999999999998753    3334467788888884  245789998


Q ss_pred             eec
Q 023871          166 QKR  168 (276)
Q Consensus       166 ~R~  168 (276)
                      .||
T Consensus       106 ~RP  108 (108)
T d2cssa1         106 SRP  108 (108)
T ss_dssp             EEC
T ss_pred             eCc
Confidence            886

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=2.3e-06  Score=64.72  Aligned_cols=77  Identities=19%  Similarity=0.380  Sum_probs=59.0

Q ss_pred             ceEEEEecC----cceeEEeeeC--------------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc
Q 023871           85 EEYEVEIEQ----PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE  146 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~--------------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~  146 (276)
                      ++..|+|.|    ++|+.+.-+.              .+++||..|.|||.|+++| |++||+|+++-..      +..+
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~------~v~~   77 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ------NVVK   77 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTT
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCe------EcCC
Confidence            567788877    6888885332              2368999999999999999 9999999998753      2223


Q ss_pred             c--hhHHHHhhcccCceEEEEeec
Q 023871          147 Y--GRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       147 ~--g~~~~air~r~gpv~L~l~R~  168 (276)
                      .  -++..+|+.-.+.+.|++.+.
T Consensus        78 ~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          78 VGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             CCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHcCCCeEEEEEEec
Confidence            3  468888997778888887763

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.7e-06  Score=63.00  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=54.4

Q ss_pred             cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus        94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      ++|+.+.  .+.++||..|.+||.|+++| +++||+|+.+-..    -..-...-+++..|+...+++.|.+.|.
T Consensus         9 g~Gf~l~--~~~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~----~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1           9 GFGFTIC--CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER----PVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             BTSEEEE--CSSSCEEEEECTTSHHHHHT-CCTTCEEEEETTE----ECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             cccEEEE--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE----ECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            5777775  46689999999999999999 9999999998753    1112233478889998899999999985

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=1.8e-06  Score=68.11  Aligned_cols=83  Identities=18%  Similarity=0.334  Sum_probs=60.3

Q ss_pred             cccceEEEEecC-c---ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           82 EKYEEYEVEIEQ-P---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        82 ~~~~~y~V~l~K-P---LGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      -..+..+|+|.| |   ||+.+.-+.      ..++||..|.|+|-|+++|.|++||+|+.+-..    -..-..+-+++
T Consensus        12 ~~~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~----~v~~~~~~e~~   87 (122)
T d1v5qa_          12 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI----PTEDSTFEEAN   87 (122)
T ss_dssp             CCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTE----ESSSSCHHHHH
T ss_pred             ccceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCC----cCCCCCHHHHH
Confidence            345788999977 3   889987542      237999999999999999999999999998642    11122344778


Q ss_pred             HHhhcccCceEEEEeec
Q 023871          152 YTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~  168 (276)
                      ..|+.-...+.|+|.+.
T Consensus        88 ~~lk~~~~~~~l~l~~~  104 (122)
T d1v5qa_          88 QLLRDSSITSKVTLEIE  104 (122)
T ss_dssp             HHHHHHTTTTCEEEEEE
T ss_pred             HHHHcCCCceEEEEEEe
Confidence            88886555555555443

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2.2e-06  Score=64.68  Aligned_cols=77  Identities=19%  Similarity=0.345  Sum_probs=56.1

Q ss_pred             EEEEec--CcceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc----
Q 023871           87 YEVEIE--QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ----  156 (276)
Q Consensus        87 y~V~l~--KPLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~----  156 (276)
                      ..|++.  -+||+.+..+.    +.++||..|.|||.|+++|.+++||+|+.+...    -..-..+.+++..|+.    
T Consensus        10 ~~v~~~~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~----~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1          10 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE----SMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             EEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTS----CCTTCCHHHHHHHHHHSCCS
T ss_pred             EEEEecCCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCE----ECCCCCHHHHHHHHHhccCC
Confidence            344444  46778886542    338999999999999999999999999998753    1122345567777774    


Q ss_pred             ccCceEEEEee
Q 023871          157 RVGPLLMKMQK  167 (276)
Q Consensus       157 r~gpv~L~l~R  167 (276)
                      ...|+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence            25778888876

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=4e-06  Score=61.75  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=53.5

Q ss_pred             ceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-cc-CceEEEEeecCCC
Q 023871           95 YGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKRYGK  171 (276)
Q Consensus        95 LGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~-gpv~L~l~R~~~~  171 (276)
                      ||+.+....+. |++|.+|.|++.|+++| |++||+|+.+-..   .+   +.......+|+. ++ ..+.|.+.|+.|+
T Consensus         5 LGv~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~---~i---~~~~~~~~~i~~~~~g~~v~l~v~r~~g~   77 (88)
T d2z9ia1           5 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDR---PI---NSADALVAAVRSKAPGATVALTFQDPSGG   77 (88)
T ss_dssp             CCEEEECCC-CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTE---EC---CSHHHHHHHHHTSCTTCEEEEEEEETTTE
T ss_pred             EeEEEEecCCCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCC---cC---CcHHHHHHHHHhCCCCCEEEEEEEECCCC
Confidence            68888876555 99999999999999999 9999999998643   22   344445566654 33 4679999997775


Q ss_pred             c
Q 023871          172 M  172 (276)
Q Consensus       172 ~  172 (276)
                      .
T Consensus        78 ~   78 (88)
T d2z9ia1          78 S   78 (88)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=68.01  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             HHHHhhHHHHHHHH-HHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          202 MQNYMKKKEQKERR-EQDLREGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       202 ~~nYkk~Kelkkqa-e~~~~eGnaLfk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      +..|+++-++...- +-.++-|..|.+.   +++++||..|+++|..+|++.. ..+|||+|.||.++|++++|+..++
T Consensus        19 e~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~   96 (122)
T d1nzna_          19 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKALKYVR   96 (122)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            36788877776653 4467899999764   5667799999999999987642 4589999999999999999998763

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.4e-06  Score=67.13  Aligned_cols=80  Identities=21%  Similarity=0.412  Sum_probs=60.9

Q ss_pred             EEEEecC----cceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           87 YEVEIEQ----PYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        87 y~V~l~K----PLGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      .+|+|.|    +||+.+.-+           .+.++||..|.|+|-|+++|.+++||+|+.|...   .| .-....+++
T Consensus        11 ~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~---~v-~~~t~~ea~   86 (111)
T d1ujua_          11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQ---SL-LGLTHGEAV   86 (111)
T ss_dssp             SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSC---BC-TTSCHHHHH
T ss_pred             EEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCc---cc-CCCCHHHHH
Confidence            3455543    588988643           2348999999999999999999999999998753   22 222445788


Q ss_pred             HHhhcccCceEEEEeecCC
Q 023871          152 YTIRQRVGPLLMKMQKRYG  170 (276)
Q Consensus       152 ~air~r~gpv~L~l~R~~~  170 (276)
                      ..|+.-.+.|.|++.|++.
T Consensus        87 ~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          87 QLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            8999777889999999775

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.8e-06  Score=65.49  Aligned_cols=81  Identities=21%  Similarity=0.322  Sum_probs=59.4

Q ss_pred             cccceEEEEecC----cceeEEeee------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871           82 EKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (276)
Q Consensus        82 ~~~~~y~V~l~K----PLGl~f~e~------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~  151 (276)
                      ...+.++|+|.|    ++|+.+.-+      ...++||..|.++|-|+++|.+++||+|+++-..    -..-..+-+++
T Consensus         5 ~~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~----~v~~~t~~e~~   80 (99)
T d1x5ra1           5 VHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGI----ATEDGTMEEAN   80 (99)
T ss_dssp             CSSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTE----ESTTSBHHHHH
T ss_pred             ceeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE----ECCCCCHHHHH
Confidence            345678888865    799999743      2348999999999999999999999999998652    11223455788


Q ss_pred             HHhhcccCceEEEEe
Q 023871          152 YTIRQRVGPLLMKMQ  166 (276)
Q Consensus       152 ~air~r~gpv~L~l~  166 (276)
                      ..||.-...+.|+|.
T Consensus        81 ~~lr~~~~~~~l~l~   95 (99)
T d1x5ra1          81 QLLRDAALAHKVVLE   95 (99)
T ss_dssp             HHHHHHHTTTCEEEE
T ss_pred             HHHHhCCCCCEEEEE
Confidence            888855555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.2e-06  Score=60.67  Aligned_cols=71  Identities=11%  Similarity=0.004  Sum_probs=52.8

Q ss_pred             hhcCCCcchhHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 023871          187 ERNSGVISNRVREIQMQNYMKKKEQKE--------RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV  258 (276)
Q Consensus       187 ~r~~G~i~~al~Eiq~~nYkk~Kelkk--------qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~  258 (276)
                      --+.|++.+|+.-+++     +.++..        ..+-..+-|+.+++.|+|++|+..|++||+++|++.   .+++|+
T Consensus        15 ~~~~g~y~~A~~~~~~-----Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~---~a~~Nl   86 (95)
T d1tjca_          15 AYTEADYYHTELWMEQ-----ALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ---RANGNL   86 (95)
T ss_dssp             HHHTTCHHHHHHHHHH-----HHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred             HHHCCCHHHHHHHHHH-----HHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH---HHHHHH
Confidence            3467888888665544     333322        122345789999999999999999999999999997   589998


Q ss_pred             hHHHHhc
Q 023871          259 ACCYSKL  265 (276)
Q Consensus       259 AcCyaKL  265 (276)
                      +-+.-.+
T Consensus        87 ~~~~~~l   93 (95)
T d1tjca_          87 KYFEYIM   93 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8766544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=1.8e-05  Score=64.61  Aligned_cols=88  Identities=10%  Similarity=0.007  Sum_probs=69.8

Q ss_pred             HHhhcCCCcchhHHHHHH-----------------HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 023871          185 RAERNSGVISNRVREIQM-----------------QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKP  246 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~-----------------~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P  246 (276)
                      +.-...|+++.++..++.                 --+...-.+.... +.+.+.+..+.+.|+|++|+..++++|.++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            344478888888888877                 0122333344443 3456889999999999999999999999999


Q ss_pred             ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          247 TPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       247 ~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+.   .+|+++..||.++|++.+|+..+
T Consensus        99 ~~e---~~~~~l~~al~~~Gr~~eAl~~y  124 (179)
T d2ff4a2          99 YRE---PLWTQLITAYYLSDRQSDALGAY  124 (179)
T ss_dssp             TCH---HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ccH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            997   68999999999999999999865

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=2.4e-06  Score=67.10  Aligned_cols=69  Identities=19%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             hHHHHHH--HHHhhHHHHHHHH-HHHHHHHHHHHH----------cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871          196 RVREIQM--QNYMKKKEQKERR-EQDLREGLQLYR----------TGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (276)
Q Consensus       196 al~Eiq~--~nYkk~Kelkkqa-e~~~~eGnaLfk----------~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy  262 (276)
                      ++..|.+  ..|.++.++...- +-+++.|..++.          .+++++||..|++||+++|++.   .+|||++.||
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~---~a~~~lG~~y   85 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh---HHHhhHHHHH
Confidence            3444444  6788888887774 456789988874          4566899999999999999996   5899999999


Q ss_pred             HhcCC
Q 023871          263 SKLNQ  267 (276)
Q Consensus       263 aKLgq  267 (276)
                      ..+|+
T Consensus        86 ~~~g~   90 (145)
T d1zu2a1          86 TSFAF   90 (145)
T ss_dssp             HHHHH
T ss_pred             HHccc
Confidence            98865

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=4.3e-06  Score=63.91  Aligned_cols=82  Identities=21%  Similarity=0.351  Sum_probs=63.5

Q ss_pred             EEEEecCcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871           87 YEVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        87 y~V~l~KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~  164 (276)
                      +.+.=++|+|+.+.-+.|.  .+||..|.|++.|++.+ |++||+|+.+-..   .| .-..+-+++..|+.-...|.|+
T Consensus         9 v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~---~v-~~~t~~eav~li~~~~~~v~L~   83 (103)
T d1wf7a_           9 VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGI---SA-QGMTHLEAQNKIKACTGSLNMT   83 (103)
T ss_dssp             EEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTE---EC-SSCCHHHHHHHHHHCSSEEEEE
T ss_pred             EEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHCC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEE
Confidence            5566678889999887664  79999999998888655 9999999998753   22 2234457788888778889999


Q ss_pred             EeecCCCcc
Q 023871          165 MQKRYGKME  173 (276)
Q Consensus       165 l~R~~~~~~  173 (276)
                      ++|......
T Consensus        84 v~R~~~~~~   92 (103)
T d1wf7a_          84 LQRASAAAK   92 (103)
T ss_dssp             ECCCSCCCC
T ss_pred             EEECCCCCC
Confidence            999876544

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.96  E-value=8.3e-06  Score=60.75  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             ceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEEEEeecCC
Q 023871           95 YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYG  170 (276)
Q Consensus        95 LGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L~l~R~~~  170 (276)
                      +||.+....  ..+++|..|.+++.|+++| |++||+|+++-..   .+ .-...-.+...|+...| +|.|.+.|+-.
T Consensus         7 iGi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~---~v-~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           7 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGT---AV-KGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EC-TTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCce---Ec-CCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            466666543  2389999999999999999 9999999998753   11 11133456677775555 69999998643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.2e-06  Score=74.45  Aligned_cols=70  Identities=7%  Similarity=-0.079  Sum_probs=45.4

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+|.++-++..+ ...|..+|..+..+|+|++||..|++||+++|++.   .+|+|++.||.+++++++|++.+
T Consensus        99 ~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~---~a~~~~~~~~~~~~~~~~Al~~~  169 (315)
T d2h6fa1          99 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLWDNELQYV  169 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcch---HHHHHHHHHHHHHHhhHHHHHHH
Confidence            445555555444 34456667777777777777777777777777764   46777777777777777776653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.7e-06  Score=71.81  Aligned_cols=79  Identities=8%  Similarity=-0.069  Sum_probs=68.1

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      ..+.+++|+     ..|.++-+++..- ..|..+|..+.++| +|++|+..|++||.++|++.   .+|+|++.|+.++|
T Consensus        55 ~~e~~~~Al-----~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~---~a~~~~~~~~~~l~  126 (315)
T d2h6fa1          55 RDERSERAF-----KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLR  126 (315)
T ss_dssp             HTCCCHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHT
T ss_pred             hCCchHHHH-----HHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh---hHHHHHhHHHHhhc
Confidence            566777774     5677777777774 56889999999987 59999999999999999996   69999999999999


Q ss_pred             ChhHHHhhh
Q 023871          267 QVPLLLALI  275 (276)
Q Consensus       267 q~~eAI~aL  275 (276)
                      ++++|++.+
T Consensus       127 ~~~eAl~~~  135 (315)
T d2h6fa1         127 DPSQELEFI  135 (315)
T ss_dssp             CCTTHHHHH
T ss_pred             cHHHHHHHH
Confidence            999999876

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.3e-06  Score=62.34  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             EEEEecC---cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc---
Q 023871           87 YEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR---  157 (276)
Q Consensus        87 y~V~l~K---PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r---  157 (276)
                      ..|+|+|   +|||.+.-+.+   +++||..|.|+|-|+++|.|++||+|++|-..   .| .-..+-+++..|++-   
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~---~v-~~~s~~e~~~~l~~a~~~   83 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGL---TL-RGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTE---EC-TTCBHHHHHHHHHHHHHC
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCE---EC-CCCcHHHHHHHHHHccCC
Confidence            4577766   68999986533   26999999999999999999999999998753   11 112344667777741   


Q ss_pred             --cCceEEEEeecCC
Q 023871          158 --VGPLLMKMQKRYG  170 (276)
Q Consensus       158 --~gpv~L~l~R~~~  170 (276)
                        ..++.|...+...
T Consensus        84 ~~~~~~~l~v~~~~s   98 (103)
T d1ufxa_          84 KDRDYIDFLVTEFNS   98 (103)
T ss_dssp             SSCSEEEEEECCCCC
T ss_pred             CccceEEEEEeCCCC
Confidence              2567676665443

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=4.9e-06  Score=63.74  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=62.1

Q ss_pred             EEEEecCcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871           87 YEVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK  164 (276)
Q Consensus        87 y~V~l~KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~  164 (276)
                      +.+.=.+|+|+.+.-+.|.  ++||..|.|++-|++++ +++||+|+.|...   .| .-..+-++...|+.-..+|.|+
T Consensus         9 v~~~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~---~v-~~~~~~e~v~ll~~~~~~v~l~   83 (103)
T d1v5la_           9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGF---GT-ESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             CEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTE---EC-SSCCHHHHHHHHTTCCSEEECE
T ss_pred             EEEECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCEEEEE
Confidence            5566679999999988665  79999999999998766 9999999998643   11 2223346777888777899999


Q ss_pred             EeecCCC
Q 023871          165 MQKRYGK  171 (276)
Q Consensus       165 l~R~~~~  171 (276)
                      +.|....
T Consensus        84 V~R~~~~   90 (103)
T d1v5la_          84 IDRAETR   90 (103)
T ss_dssp             ECCCTTT
T ss_pred             EEECCcc
Confidence            9996543

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.3e-05  Score=58.41  Aligned_cols=68  Identities=25%  Similarity=0.446  Sum_probs=50.6

Q ss_pred             EEEecCc-----ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871           88 EVEIEQP-----YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (276)
Q Consensus        88 ~V~l~KP-----LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~  162 (276)
                      .|.|.||     ||+.+.    |+ +|..|.|||-|+++| +++||+|+.+...    -..-..+.+++..|+.-.+.+.
T Consensus         3 tv~l~r~~~~~~lGf~i~----~g-~V~~V~~gs~A~~~g-L~~GD~Il~INg~----~v~~~~~~~~~~ll~~~~~~v~   72 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQ----NG-IICSLMRGGIAERGG-VRVGHRIIEINGQ----SVVATPHEKIVHILSNAVGEIH   72 (79)
T ss_dssp             EEEEEESSTTSCCCEEEE----TT-EEEEECTTSHHHHHT-CCSSCEEEEETTE----ECTTSCHHHHHHHHHHCCEEEE
T ss_pred             EEEEEcCCCCCCcCEEEE----CC-EEEEEcCCCHHHHCC-CCCCCEEEEECCE----EeCCCCHHHHHHHHHcCCCEEE
Confidence            4555554     677774    22 899999999999977 9999999998753    2222355678889998777888


Q ss_pred             EEE
Q 023871          163 MKM  165 (276)
Q Consensus       163 L~l  165 (276)
                      |++
T Consensus        73 l~v   75 (79)
T d1y7na1          73 MKT   75 (79)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.4e-05  Score=58.15  Aligned_cols=79  Identities=18%  Similarity=0.331  Sum_probs=55.6

Q ss_pred             ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccc-cCcccCCEEEEeecccCCcceecccchhHHHHhhc-
Q 023871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-  156 (276)
Q Consensus        85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~-G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-  156 (276)
                      +...|+|.|    +||+.+.-+.|  .++||..|.|||-|+++ |.|++||+|++|-..   . ..-..+-+++..|+. 
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~---~-v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---D-IAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTB---C-TTSSCHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCE---E-CCCCCHHHHHHHHHhC
Confidence            457788877    59999986644  37999999999999995 779999999998753   1 122244567777763 


Q ss_pred             ---ccCceEEEEee
Q 023871          157 ---RVGPLLMKMQK  167 (276)
Q Consensus       157 ---r~gpv~L~l~R  167 (276)
                         ....|.|...|
T Consensus        84 ~~~~~~~v~L~vrp   97 (106)
T d2cs5a1          84 CERHSGELMLLVRP   97 (106)
T ss_dssp             HHCCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECC
Confidence               23345555533

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.3e-05  Score=60.88  Aligned_cols=77  Identities=19%  Similarity=0.415  Sum_probs=56.7

Q ss_pred             EEEEec--C---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871           87 YEVEIE--Q---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (276)
Q Consensus        87 y~V~l~--K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g  159 (276)
                      ..|+|.  |   ++||.+..+.+  .++||..|.++|-|+++| |++||.|+.+-..   .| .-...-+++..|+. .+
T Consensus        10 ~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~---~v-~~~~~~~v~~ll~~-~~   83 (101)
T d1ueza_          10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK---SL-ARVTHAEAVKALKG-SK   83 (101)
T ss_dssp             EEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTE---EC-SSCCHHHHHHHSSS-SS
T ss_pred             EEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEECCE---EC-CCCCHHHHHHHHhc-CC
Confidence            455553  3   59999986533  389999999999999999 9999999998653   11 11234578888887 56


Q ss_pred             ceEEEEeecC
Q 023871          160 PLLMKMQKRY  169 (276)
Q Consensus       160 pv~L~l~R~~  169 (276)
                      .+.|.+.|+.
T Consensus        84 ~~~l~V~~~~   93 (101)
T d1ueza_          84 KLVLSVYSAG   93 (101)
T ss_dssp             SCCEEECCCC
T ss_pred             CEEEEEEECC
Confidence            7778777754

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.9e-05  Score=56.98  Aligned_cols=72  Identities=10%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             eEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871           86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (276)
Q Consensus        86 ~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv  161 (276)
                      ..+|+|.|    ++|+.+.    | .+|..|.+||-|+++| +++||+|+.+...    -..--..-+++..|+.-.+.+
T Consensus         5 pr~V~l~k~~~g~~Gf~i~----~-g~V~~v~~g~~A~~~G-l~~GD~Il~INg~----~v~~~t~~~~~~ll~~~~~~v   74 (82)
T d1r6ja_           5 PRTITMHKDSTGHVGFIFK----N-GKITSIVKDSSAARNG-LLTEHNICEINGQ----NVIGLKDSQIADILSTSGTVV   74 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE----T-TEEEEECTTSHHHHHT-CCSSEEEEEETTE----ECTTCCHHHHHHHHHHSCSEE
T ss_pred             CEEEEEEeCCCCCcCEEEE----E-EEEEEECCCChHHhcC-cCCCCEEEEeCCe----EEeeCCHHHHHHHHHcCCCEE
Confidence            36788887    5777774    2 2799999999999999 9999999998753    111223457788889777888


Q ss_pred             EEEEee
Q 023871          162 LMKMQK  167 (276)
Q Consensus       162 ~L~l~R  167 (276)
                      +|++--
T Consensus        75 ~l~v~p   80 (82)
T d1r6ja_          75 TITIMP   80 (82)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            888753

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8.2e-06  Score=60.24  Aligned_cols=59  Identities=15%  Similarity=0.358  Sum_probs=48.3

Q ss_pred             CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (276)
Q Consensus       103 ~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~  168 (276)
                      .+.|++|..|.|++.|+++| |++||+|+.+..      ++..++.+...+++...+++.|++.|.
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~   81 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQ------QAVKNIAELRKVLDSKPSVLALNIQRG   81 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETT------EECSSHHHHHHHTTTCCSCCCEEEESS
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECC------EEcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            34489999999999999999 999999999864      244566667777777677889999884

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=4.3e-05  Score=61.01  Aligned_cols=56  Identities=5%  Similarity=-0.170  Sum_probs=30.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH---HHHHHHHhHHHHhcCChhHHHhh
Q 023871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVPLLLAL  274 (276)
Q Consensus       219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~---a~A~YN~AcCyaKLgq~~eAI~a  274 (276)
                      ...|..++..|+|++|+..|++|+.+.|.....   ..+++|++.+|...+++..|+..
T Consensus        55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  113 (366)
T d1hz4a_          55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET  113 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555554433   33455555555555555555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=7e-05  Score=63.06  Aligned_cols=91  Identities=13%  Similarity=0.015  Sum_probs=61.4

Q ss_pred             HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCC---hhhHHHHHHHH
Q 023871          185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYR-TGKYEVAREKFESVLGSKPT---PEESSVASYNV  258 (276)
Q Consensus       185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk-~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN~  258 (276)
                      ..=+..|++++++..++.  ..|.+............+-|..++. .|+|++|+..|++|+++.+.   ......++.|+
T Consensus        85 ~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l  164 (290)
T d1qqea_          85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC  164 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence            333456667776555544  2233322222223334466666655 69999999999999977543   33447789999


Q ss_pred             hHHHHhcCChhHHHhhh
Q 023871          259 ACCYSKLNQVPLLLALI  275 (276)
Q Consensus       259 AcCyaKLgq~~eAI~aL  275 (276)
                      |.||.++|++++|++.+
T Consensus       165 a~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         165 ADLKALDGQYIEASDIY  181 (290)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHH
Confidence            99999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=8.8e-06  Score=62.77  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh---hHHHhhhC
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV---PLLLALIE  276 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~---~eAI~aLE  276 (276)
                      +-.+++...++|++|...|++||.++|++.   .+++|.|+|+.+.++.   ++||..|+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~---~~~~n~a~~L~~s~~~~d~~~Ai~~l~   60 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSK---STQFEYAWCLVRTRYNDDIRKGIVLLE   60 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            557888999999999999999999999996   5899999999985554   56887763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=7.6e-05  Score=60.74  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------------------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------EESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------------------~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .+..++.|+.++..|++++|+..|.+||++.|.+                   ..+..++.|+|-|+.++|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3567899999999999999999999999998754                   123578999999999999999999876

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.6e-05  Score=59.32  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeecC
Q 023871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRY  169 (276)
Q Consensus        93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~~  169 (276)
                      ..+|+.+.  .+.++||..|.|+|-|+++| |++||+|+.|-..    -..-..+.+++..|+.- ...|.|++.++.
T Consensus        26 ~g~Gf~i~--g~~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~----~v~~~~~~ev~~llk~~~~~~v~l~v~~~~   96 (111)
T d1vaea_          26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGV----DCKWLTVSEVMKLLKSFGGEEVEMKVVSLL   96 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEETTE----ECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred             CccCEEEE--CCccEEEEEEcCCChHHhcc-cCcccEEEEECCE----EcCCCCHHHHHHHHHcCCCCeEEEEEECCC
Confidence            35677664  35579999999999999999 9999999998753    11222445788899854 446788877754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00022  Score=59.93  Aligned_cols=84  Identities=10%  Similarity=0.013  Sum_probs=63.9

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH----HHHHH
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASY  256 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~----a~A~Y  256 (276)
                      ...|++++++     .+|+++.++...       ..-+.+.|..+.++|+|++|+..|++++.+.|+....    ...+.
T Consensus       129 ~~~~~~~~A~-----~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         129 NDLHDYAKAI-----DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HTTCCHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             hHHHHHHHHH-----HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            4567777774     445555555332       2234678999999999999999999999998886432    45578


Q ss_pred             HHhHHHHhcCChhHHHhhhC
Q 023871          257 NVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       257 N~AcCyaKLgq~~eAI~aLE  276 (276)
                      +.+.||...++++.|...++
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~  223 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQ  223 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHH
Confidence            99999999999999988763

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00012  Score=54.24  Aligned_cols=58  Identities=19%  Similarity=0.339  Sum_probs=46.1

Q ss_pred             CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY  169 (276)
Q Consensus       104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~  169 (276)
                      +.|++|.+|.|++.|+++| |++||+|+.+-..   .   ..++.+.+.+|+. ..++.+.+.|.-
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~---~---V~s~~dl~~~l~~-g~~v~l~v~R~g   87 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQ---M---VQNAEDVYEAVRT-QSQLAVQIRRGR   87 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---E---CCSHHHHHHHHTT-CSSEEEEEEETT
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCE---E---cCCHHHHHHHhcC-CCEEEEEEEECC
Confidence            4589999999999999999 9999999998643   3   3445556677764 677899999853

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00023  Score=65.26  Aligned_cols=67  Identities=7%  Similarity=-0.122  Sum_probs=56.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+++-.+... +-++..|..+...|+|++|+..|++|++++|++.   .+|+|+|.+|...|++.+|+..+
T Consensus       143 ~~~al~~~~~-~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~---~~~~~Lg~~~~~~~~~~~A~~~y  209 (497)
T d1ya0a1         143 QSSSCSYICQ-HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---QPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             CCHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCCCHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch---HHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444333332 3567899999999999999999999999999996   68999999999999999998754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0002  Score=56.97  Aligned_cols=57  Identities=16%  Similarity=0.038  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhh--HHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVPLLLALIE  276 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e--~a~A~YN~AcCyaKLgq~~eAI~aLE  276 (276)
                      -+|..++..|+|++|+..|++||+..|++..  ...++++++.||..+|++++|+..++
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~   75 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ   75 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4688889999999999999999999998643  38899999999999999999998763

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00072  Score=50.28  Aligned_cols=79  Identities=10%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871           85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG  159 (276)
Q Consensus        85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g  159 (276)
                      +.++|+|.|   .||+.+..+.++..++..+.    ++..+.+++||+|++|-..    -..-...-+++..||.-  ..
T Consensus        10 e~~~v~l~k~~~glGf~i~g~~~~~~~~~~~~----~~~~~~L~~GD~Il~VNg~----~v~~~t~~evv~~lk~~~~g~   81 (96)
T d1ujva_          10 ELMTLTIVKGAQGFGFTIADSPTGQRVKQILD----IQGCPGLCEGDLIVEINQQ----NVQNLSHTEVVDILKDCPIGS   81 (96)
T ss_dssp             CCEEEEEECCSSSSSEEEEEETTEEEEEEESC----GGGSTTCCSSCEEEEETTE----ECSSCCHHHHHHHHHHSCTTS
T ss_pred             eEEEEEEEeCCCcccEEEEeeCCCceEeeccC----cccccCCCCCCEEEEECCE----ECCCCCHHHHHHHHHcCCCCC
Confidence            568888887   47899987766655555544    4444569999999998753    22223455788889853  35


Q ss_pred             ceEEEEeecCCC
Q 023871          160 PLLMKMQKRYGK  171 (276)
Q Consensus       160 pv~L~l~R~~~~  171 (276)
                      .|.|.+.|..++
T Consensus        82 ~v~l~v~R~~~P   93 (96)
T d1ujva_          82 ETSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEEECCSSC
T ss_pred             EEEEEEEECCCC
Confidence            799999998775

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.06  E-value=0.00099  Score=49.53  Aligned_cols=70  Identities=7%  Similarity=0.060  Sum_probs=52.2

Q ss_pred             ceeEEeeeCCCCeEEEEeCCC--------CCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEE
Q 023871           95 YGLKFAKGRDGGTYIDAIAPG--------GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKM  165 (276)
Q Consensus        95 LGl~f~e~~dGgv~V~~v~~g--------gnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l  165 (276)
                      ||+.|.-. ++++.|..|.+|        +-|+++|..++||+|+++-..      +....-.+...|+.+ ..+|.|++
T Consensus         3 lG~d~~~~-~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~------~v~~~~~~~~~l~g~~G~~V~L~i   75 (91)
T d1k32a1           3 IACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGE------TVGAGSNIYRVLSEKAGTSARIRL   75 (91)
T ss_dssp             CSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTE------ECBTTBCHHHHHHTTTTSEEEEEE
T ss_pred             ccEEEEEE-CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCE------eecCcceeEEEEecCCCCEEEEEE
Confidence            68888875 678889999988        889999944899999998642      333334456666744 55679999


Q ss_pred             eecCCC
Q 023871          166 QKRYGK  171 (276)
Q Consensus       166 ~R~~~~  171 (276)
                      .|.-+.
T Consensus        76 ~R~g~~   81 (91)
T d1k32a1          76 SGKGGD   81 (91)
T ss_dssp             ECSSSC
T ss_pred             EeCCCC
Confidence            996554

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=8.9e-05  Score=54.97  Aligned_cols=57  Identities=18%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR  168 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~  168 (276)
                      .|++|.+|.|++.|+++| +++||+|+.+...      +..++...+..+.. + ..++.|++.|.
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~------~v~~~~~l~~~l~~~~~g~~v~l~v~R~   85 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGK------PISSFAALRAQVGTMPVGSKLTLGLLRD   85 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSS------BCCSSHHHHHHTTSSBTTCCCEEEEESS
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCE------EeCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            489999999999999999 9999999997643      34445555555553 3 35689999984

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=8.4e-05  Score=55.69  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh-ccc-CceEEEEeecCCC
Q 023871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRV-GPLLMKMQKRYGK  171 (276)
Q Consensus       105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air-~r~-gpv~L~l~R~~~~  171 (276)
                      -|++|.+|.+++.|+++| |++||+|+.+...   .+   .++...+..|. .+. .++.|++.|.--.
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNK---PA---ISALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSS---BC---CCSHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCE---ec---ccHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            489999999999999999 9999999987642   33   34444455553 333 4578888885433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.95  E-value=7.9e-05  Score=58.11  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=36.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP  269 (276)
Q Consensus       224 aLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~  269 (276)
                      .+-++++|++|+..|++||+++|++.   .+++|++.||..++++.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~---~~~~~~g~~l~~~~~~~   48 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDA---DNLTRWGGVLLELSQFH   48 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcch---HHHHHHHHHHHHhhhhh
Confidence            34567889999999999999999996   58999999999765553

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.71  E-value=0.0012  Score=49.63  Aligned_cols=55  Identities=18%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-cc-CceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~-gpv~L~l~R~  168 (276)
                      ||+|.+|.+|+.|++ + |++||+|+.+...      +..++...+.+|+. +. ..|.|.+.|.
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~------~v~~~~~l~~~i~~~~~G~~v~l~v~R~   60 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESINGM------PTSNLTTYSAALKTISVGEVINITTDQG   60 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETTE------ECSSHHHHHHHHTTCCTTCEEEEEETTE
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECCE------EcCCHHHHHHHHhhCCCCCEEEEEEEEC
Confidence            799999999999986 6 9999999998753      23456677778875 33 4589999885

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.00065  Score=57.19  Aligned_cols=53  Identities=9%  Similarity=-0.096  Sum_probs=43.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+.+...++|++|+..|++++.++|++.   .+|+|++.+|.++|++++|+..+
T Consensus       149 ~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~---~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         149 RRFVAAQAAVAPAEELAFTDSLITRNFSNY---SSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTTTTTCCCH---HHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence            556677778888888888888888888875   58899999999999888876654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.42  E-value=0.002  Score=55.35  Aligned_cols=82  Identities=12%  Similarity=-0.001  Sum_probs=60.5

Q ss_pred             cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------------
Q 023871          189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------------  249 (276)
Q Consensus       189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------------  249 (276)
                      ..|++++++..+++     .-+++.. .+-...-|..|...|+|++|+..|+++++++|++.                  
T Consensus         8 ~~G~l~eAl~~l~~-----al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIE-----AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHH-----HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            56888888666555     3333333 23345778889999999999999999999999862                  


Q ss_pred             --------------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          250 --------------ESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       250 --------------e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                                    ....++++.+.++...|++++|++.+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~  122 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA  122 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                          12456777888888888888887765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.012  Score=49.02  Aligned_cols=71  Identities=10%  Similarity=-0.097  Sum_probs=53.0

Q ss_pred             HHHhhHHHHHHH-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          203 QNYMKKKEQKER-REQDLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      ..|+++-+...+ ..-|+..|..+...+  ++++|+..|+++|+++|++..  ..+++.+.+|...+++++|+..+
T Consensus        94 ~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~Al~~~  167 (334)
T d1dcea1          94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--CWDYRRFVAAQAAVAPAEELAFT  167 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh--hhhhHHHHHHHhccccHHHHHHH
Confidence            445555444433 244678888886655  599999999999999998753  34678889999999999999764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=95.83  E-value=0.0033  Score=45.88  Aligned_cols=56  Identities=11%  Similarity=0.131  Sum_probs=42.4

Q ss_pred             CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR  168 (276)
Q Consensus       106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~  168 (276)
                      |.+|..+.+++-|+++| +++||+|+++...      +..+....+..++.  -..++.+.+.|.
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~------~v~~~~~~~~~~~~~~~~~~~~l~v~R~   77 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGL------DLTDPNVMNTLFQSMNEMTEMSLTVERD   77 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTE------ETTCHHHHHHHHHTGGGCSEEEEEEEET
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEECCE------EeecHHHHHHHHHhhccccccEEEEEEC
Confidence            88899999999999999 9999999997753      33344444555542  255689999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.016  Score=45.70  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~  249 (276)
                      +-++.-|+..|++|+|++|+..++++|+++|++.
T Consensus        74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            3346666666666666666666666666666664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.019  Score=45.17  Aligned_cols=56  Identities=7%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      .|+=|-.|.+.   .+.++||..+++++..+|...  ..++||.|-+|.++|+++.|...+
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~--rd~lY~Lav~yyklgdy~~A~~~~   96 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--RECLYYLTIGCYKLGEYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34667777655   456799999999998877653  479999999999999999998765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.04  Score=49.90  Aligned_cols=73  Identities=14%  Similarity=-0.007  Sum_probs=59.1

Q ss_pred             hcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871          188 RNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (276)
Q Consensus       188 r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg  266 (276)
                      |..|++++|     ...|+++-++...- .-.++-|..+...|++.+|+..|.+||.++|..+   .|+.|+...+.+..
T Consensus       163 ~~~~~~~~A-----~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~---~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         163 RYRNQTSQA-----ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP---AASTNLQKALSKAL  234 (497)
T ss_dssp             HHTTCHHHH-----HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH---HHHHHHHHHHHHHT
T ss_pred             HHcccHHHH-----HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhh
Confidence            455666665     46788888888775 4456899999999999999999999999999885   68999988887765


Q ss_pred             Ch
Q 023871          267 QV  268 (276)
Q Consensus       267 q~  268 (276)
                      +.
T Consensus       235 ~~  236 (497)
T d1ya0a1         235 ES  236 (497)
T ss_dssp             TS
T ss_pred             hh
Confidence            44

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.25  Score=34.86  Aligned_cols=49  Identities=12%  Similarity=0.151  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCChhhHHHHHHHHhHHH
Q 023871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGS-------KPTPEESSVASYNVACCY  262 (276)
Q Consensus       214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-------~P~~~e~a~A~YN~AcCy  262 (276)
                      ++-+...+|.++-+.|+|++|+.+|..|++.       +|+++.....+.+++..|
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Y   65 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY   65 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            3445567888899999999999999998853       455554334455555444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.74  E-value=0.58  Score=38.42  Aligned_cols=56  Identities=7%  Similarity=-0.043  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI  275 (276)
Q Consensus       218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL  275 (276)
                      |+.-+.-+...|++++|...|+++|+.+|.+..  .+|-..+-+..+.++++.|.+.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHcCChHHHHHHH
Confidence            334444445667777777777777777766531  24444455555566666655443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.71  E-value=0.78  Score=33.41  Aligned_cols=29  Identities=14%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871          215 REQDLREGLQLYRTGKYEVAREKFESVLG  243 (276)
Q Consensus       215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~  243 (276)
                      +-+.+.+|.++-+.|+|++|+..|.+||+
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456888999999999999999999973

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=87.61  E-value=0.4  Score=37.91  Aligned_cols=54  Identities=7%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871          217 QDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI  275 (276)
Q Consensus       217 ~~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL  275 (276)
                      ..++-|..++.    .+++++|+.+|++|.+...     ..++||++.||.+    ..+.++|++.+
T Consensus       180 A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~LG~~y~~G~g~~~n~~~A~~~~  241 (265)
T d1ouva_         180 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENF  241 (265)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred             cccchhhhcccCcccccchhhhhhhHhhhhcccC-----HHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence            34677777765    6799999999999998642     3589999999986    44777777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.52  E-value=0.25  Score=40.69  Aligned_cols=42  Identities=21%  Similarity=-0.009  Sum_probs=20.7

Q ss_pred             cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL  272 (276)
Q Consensus       228 ~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI  272 (276)
                      .|+++.|...|+++|...|++.+   +|-.-+--+.++|+++.|.
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~---~w~~y~~~~~~~g~~~~aR  223 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTR  223 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHTTCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHcCChHHHH
Confidence            35555555555555555555532   2333333344455555443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.21  E-value=0.46  Score=34.99  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 023871          220 REGLQLYRTGKYEVAREKFESVL  242 (276)
Q Consensus       220 ~eGnaLfk~grYeEAI~~Ye~AL  242 (276)
                      +++..+.+.|+|+|||+++.+|.
T Consensus        13 RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            57888899999999999988775

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=82.34  E-value=0.68  Score=36.46  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSK  245 (276)
Q Consensus       216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~  245 (276)
                      +.+++-|..+++.++|++|+.+|++|.+..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g   32 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK   32 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            456777777788888888888888876543