Citrus Sinensis ID: 023874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccEEEEEEcccEEcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccHHHHEEHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcc
Coil and Loop (DISEMBL)
MNFPLFYLFIYskvcpratfllfcpsvlyskesHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGyiyqcppfrlsyqglgeplcfaafgpfATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFhqvegdrnvgkmsplvrlgtergsVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTkhipklvfq
Flexible Loop (DISEMBL)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHqvegdrnvgkmSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Low Complexity Region (SEG)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCfaafgpfattafYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered region (IsUnstruct)
**FPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV**
Disordered Region (DISOPRED)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLV*****LGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISEMBL)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISPRO)
*NFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q0WUA3	382	1,4-dihydroxy-2-naphthoat	no	no	0.742	0.536	0.682	2e-79
P73962	307	Probable 1,4-dihydroxy-2-	N/A	no	0.753	0.677	0.371	3e-29

>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 166/205 (80%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct: 221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 280

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G 
Sbjct: 281 DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGN 340

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
           LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 341 LVSSYVEKHHKDNGKIFMAKYYCVR 365

Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 1,4-dihydroxy-2-naphthoate (DHNA).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 4

>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA PE=3 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 10/218 (4%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L G+R    + +   L+ G +GL   S  A +   + L+  A+  GY YQ PPFRL Y G
Sbjct: 92  LTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIGVAIFLGYTYQGPPFRLGYLG 151

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGE +C   FGP A  A Y        +   S +  +L+ S+ VG++T++ILFCSHFHQV
Sbjct: 152 LGELICLITFGPLAIAAAYY-------SQSQSFSWNLLTPSVFVGISTAIILFCSHFHQV 204

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPIG 220
           E D   GK SP+VRLGT+ GS V+  +V+ LY L+ AIG L    P   + + A + P  
Sbjct: 205 EDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITAIGVLCHQAPWQTLLIIA-SLPWA 262

Query: 221 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 258
             ++ +V + H    ++   K+  V  H   G  + AG
Sbjct: 263 VQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAAG 300

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
449438213	404	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.844	0.576	0.716	1e-93
357476309	359	hypothetical protein MTR_4g094100 [Medic	0.822	0.632	0.710	6e-91
224141217	401	predicted protein [Populus trichocarpa]	0.807	0.556	0.726	2e-89
297837449	287	hypothetical protein ARALYDRAFT_475272 [	0.804	0.773	0.707	3e-86
356528024	398	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.804	0.557	0.698	6e-85
356551124	397	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.804	0.559	0.680	4e-83
296087485	386	unnamed protein product [Vitis vinifera]	0.742	0.531	0.746	3e-82
225462860	364	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.742	0.563	0.746	5e-82
45773758	287	At1g60600 [Arabidopsis thaliana]	0.742	0.714	0.682	8e-78
30696438	287	1,4-dihydroxy-2-naphthoate octaprenyltra	0.742	0.714	0.682	1e-77

>gi|449438213|ref|XP_004136884.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus] gi|449478849|ref|XP_004155434.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/233 (71%), Positives = 196/233 (84%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GS TGTLV AY  L LGF+GLTWAS+EAGNLR+I+ L  +++CGYIYQCPPFRLSYQG
Sbjct: 170 LVGSPTGTLVAAYTFLALGFMGLTWASLEAGNLRSILFLAFSIVCGYIYQCPPFRLSYQG 229

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLL  + RE   L I+ T+LSAS+LVG TT+LILFCSHFHQV
Sbjct: 230 LGEPLCFAAFGPFATTAFYLLQSNAREMRYLPISNTILSASILVGTTTTLILFCSHFHQV 289

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           EGDR VGKMSPLVRLGTERGS VVK AV++LY LLFA+GLS+ LP +CI  C +T P+GK
Sbjct: 290 EGDRAVGKMSPLVRLGTERGSKVVKVAVIMLYVLLFALGLSKNLPFTCILFCGLTIPVGK 349

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV 274
           LVVS+VEENHKDK KIFMAKY+CVR HA+FG AL AGL+ AR++ T +  + +
Sbjct: 350 LVVSFVEENHKDKQKIFMAKYFCVRLHAIFGLALAAGLVVARLISTINTSRTI 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476309|ref|XP_003608440.1| hypothetical protein MTR_4g094100 [Medicago truncatula] gi|355509495|gb|AES90637.1| hypothetical protein MTR_4g094100 [Medicago truncatula]

 Score =  339 bits (870), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 192/228 (84%), Gaps = 1/228 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTG  + AYL L LGF+GLTWA+VEAGN+R+++ LTCA+ CGYIYQCPPFRLSYQG
Sbjct: 128 LVGSRTGIFIVAYLCLALGFVGLTWAAVEAGNIRSVLFLTCAIFCGYIYQCPPFRLSYQG 187

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRE-NLCLSITATVLSASLLVGLTTSLILFCSHFHQ 160
           LGEPLCFAAFGPFAT AFYL+ GS         ++ TVLSAS+LVG TTSLILFCSHFHQ
Sbjct: 188 LGEPLCFAAFGPFATAAFYLVQGSASSVTNHFPLSGTVLSASVLVGFTTSLILFCSHFHQ 247

Query: 161 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 220
           V+GD  VGK+SPLVRLGTERG+ VVK AV+ LY+LL A GLS+ALPL+CIFLCA+T PIG
Sbjct: 248 VDGDEEVGKLSPLVRLGTERGAEVVKAAVLSLYALLVAFGLSKALPLTCIFLCALTLPIG 307

Query: 221 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTK 268
            LV+ +V++NHKDK KIFMAKY+CVR HALFGAAL  GL+ AR++ +K
Sbjct: 308 NLVIKFVQDNHKDKDKIFMAKYFCVRLHALFGAALAFGLVLARMVNSK 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141217|ref|XP_002323971.1| predicted protein [Populus trichocarpa] gi|118485902|gb|ABK94797.1| unknown [Populus trichocarpa] gi|222866973|gb|EEF04104.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 188/223 (84%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSR+   + AY  L+LGF GL W S+  GN+ AI+ L CA++CGY+YQCPPFRLSYQG
Sbjct: 173 LVGSRSVAFIAAYSSLLLGFAGLAWTSMGEGNIHAILFLACAILCGYVYQCPPFRLSYQG 232

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT+AFYLLLGST E   L +T T+LSASLLVG TT+LILFCSHFHQV
Sbjct: 233 LGEPLCFAAFGPFATSAFYLLLGSTSEMSILPLTGTILSASLLVGFTTTLILFCSHFHQV 292

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           E D+ VGK SPLVRLGTERGS VVK AV +LYSLLFA GLSR LPL+CI LC++T P+GK
Sbjct: 293 EEDKAVGKFSPLVRLGTERGSGVVKVAVAMLYSLLFASGLSRTLPLACILLCSLTLPMGK 352

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 264
           LVV +VEEN+KDKGKIFMAKY+CVR HALFGAAL +GL+ AR+
Sbjct: 353 LVVGFVEENYKDKGKIFMAKYFCVRLHALFGAALASGLVAARV 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837449|ref|XP_002886606.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata] gi|297332447|gb|EFH62865.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/222 (70%), Positives = 181/222 (81%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   LVLG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLVLGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+SLLVG TTSLILFCSHFHQV
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSLLVGFTTSLILFCSHFHQV 185

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           +GD  VGK SPLVRLGTE+G+ VV+WA+ +LYS+L  +GLSR LPL C  +C +T PIG 
Sbjct: 186 DGDLAVGKYSPLVRLGTEKGAFVVRWAIRLLYSMLLVLGLSRILPLPCTLMCFLTLPIGN 245

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263
           LV SYVE++HKD GKIFMAKYYCVR HALFGAAL  GL+ AR
Sbjct: 246 LVSSYVEKHHKDNGKIFMAKYYCVRLHALFGAALSLGLVIAR 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528024|ref|XP_003532605.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 183/222 (82%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L GSR GT + AYL L +GF+GLTW +V   N+R+I+ L CA+ICGYIYQCPPFRLSYQG
Sbjct: 166 LAGSRKGTFIAAYLCLAIGFLGLTWTAVVERNIRSILFLVCAIICGYIYQCPPFRLSYQG 225

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT AFYLL GS+       ++ TVLSAS+LVG TTSLILFCSHFHQV
Sbjct: 226 LGEPLCFAAFGPFATCAFYLLHGSSSVMNHFPLSGTVLSASILVGFTTSLILFCSHFHQV 285

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           EGD+ VGKMSPLVRLGT++G+ VVK AV +LY+LL A GL +ALPL+CIFLCA+T P+G 
Sbjct: 286 EGDKEVGKMSPLVRLGTKKGAEVVKGAVFMLYALLVAFGLIKALPLTCIFLCALTLPMGN 345

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263
           LVV +VE+N+K+K KIFMAKY+CVR HALFG AL  GL+ AR
Sbjct: 346 LVVRFVEDNYKNKNKIFMAKYFCVRLHALFGVALALGLVLAR 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551124|ref|XP_003543928.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 178/222 (80%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSR G  + AY  L LGF+GLTW +V   NLR+I+ L CA+ICGYIYQCPPFRLSYQG
Sbjct: 165 MVGSRKGIFIAAYSCLALGFLGLTWTAVVERNLRSILFLVCAIICGYIYQCPPFRLSYQG 224

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT AFYLL  S R      ++ TVLSAS+LVG TTSLILFCSHFHQV
Sbjct: 225 LGEPLCFAAFGPFATCAFYLLHASARVKNHFPLSGTVLSASILVGFTTSLILFCSHFHQV 284

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           EGD+ VGKMSPLVRLG ++G+ VVK AV +LY+LL A GL +ALPL+CI LC +T P+G 
Sbjct: 285 EGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLYALLVAFGLIKALPLTCISLCTLTLPLGN 344

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263
           LVV +VE+N+KDK KIFMAKY+CVR HA+FG AL  GL+ AR
Sbjct: 345 LVVRFVEDNYKDKNKIFMAKYFCVRLHAMFGVALALGLVLAR 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087485|emb|CBI34074.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 174/205 (84%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSRTGT   AY LL LGF+GL+WAS+ AGN RAI+LL CAV CGYIYQCPPFRLSYQG
Sbjct: 160 MVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRAILLLACAVTCGYIYQCPPFRLSYQG 219

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYL+  +T E +   +TATVLSASLLVG TT+LILFCSHFHQV
Sbjct: 220 LGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTATVLSASLLVGFTTTLILFCSHFHQV 279

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           EGDR VGKMSPLVRL TE+GS +VK A+ +LYSLL A GL++ LP +CIF CA+T P+ K
Sbjct: 280 EGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMAK 339

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
           LVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 340 LVVSYVEDNHKDNSKIFMAKYYCVR 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462860|ref|XP_002270171.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Vitis vinifera]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 174/205 (84%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSRTGT   AY LL LGF+GL+WAS+ AGN RAI+LL CAV CGYIYQCPPFRLSYQG
Sbjct: 138 MVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRAILLLACAVTCGYIYQCPPFRLSYQG 197

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYL+  +T E +   +TATVLSASLLVG TT+LILFCSHFHQV
Sbjct: 198 LGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTATVLSASLLVGFTTTLILFCSHFHQV 257

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           EGDR VGKMSPLVRL TE+GS +VK A+ +LYSLL A GL++ LP +CIF CA+T P+ K
Sbjct: 258 EGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMAK 317

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
           LVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 318 LVVSYVEDNHKDNSKIFMAKYYCVR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45773758|gb|AAS76683.1| At1g60600 [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 166/205 (80%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 185

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G 
Sbjct: 186 DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGN 245

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
           LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 246 LVSSYVEKHHKDNGKIFMAKYYCVR 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696438|ref|NP_176259.2| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Arabidopsis thaliana] gi|110742781|dbj|BAE99295.1| hypothetical protein [Arabidopsis thaliana] gi|332195580|gb|AEE33701.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 166/205 (80%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 185

Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
           +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G 
Sbjct: 186 DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGN 245

Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
           LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 246 LVSSYVEKHHKDNGKIFMAKYYCVR 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2036484	382	ABC4 "ABERRANT CHLOROPLAST DEV	0.804	0.581	0.626	1.7e-73
TIGR_CMR|BA_3186	303	BA_3186 "1,4-dihydroxy-2-napht	0.746	0.679	0.231	0.0003
TIGR_CMR|DET_0401	306	DET_0401 "1,4-dihydroxy-2-naph	0.731	0.660	0.204	0.00039

TAIR|locus:2036484 ABC4 "ABERRANT CHLOROPLAST DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 139/222 (62%), Positives = 166/222 (74%)

Query:    42 LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
             L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct:   161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query:   102 LGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
             LGEPLC            YLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct:   221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 280

Query:   162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
             +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G 
Sbjct:   281 DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGN 340

Query:   222 LVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263
             LV SYVE++HKD GKIFMAKYYCVR HAL GAAL  GL+ AR
Sbjct:   341 LVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAALSLGLVIAR 382

GO:0004659 "prenyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0042372 "phylloquinone biosynthetic process" evidence=IMP

GO:0046428 "1,4-dihydroxy-2-naphthoate octaprenyltransferase activity" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|BA_3186 BA_3186 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
 Identities = 51/220 (23%), Positives = 91/220 (41%)

Query:    44 GSRTGTLVTAYLLL--VLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
             G +   ++T  LLL  V   IG+      +  L  I L+  AV  GY+Y   P  ++Y  
Sbjct:    90 GLKPKNVLTVALLLYVVAAIIGVYICMNSSWWLVVIGLIGMAV--GYLYTGGPLPIAYTP 147

Query:   102 LGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
              GE +             + +  +T       IT   +  S+ +G+    I   ++   +
Sbjct:   148 FGELVSGLLMGTCFVLIAFFIQTNT-------ITTESVLISIPIGILVGAINMSNNIRDI 200

Query:   162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI-GLSRALPLSCIFLCAMTSPIG 220
             E D   G+ + ++ LG E+  V +  A  I Y  +  I  +    P + +    +  PI 
Sbjct:   201 EEDIKGGRKTLVILLGREKAVVTLAIAFFIAYLWIAVIVWMGYISPWALVMFLGLRKPIS 260

Query:   221 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 260
               + S+ ++  KD G + +A       + +FG  L AGL+
Sbjct:   261 A-IQSF-QKGAKDPGYMRIAMKSTAMTNTIFGFLLSAGLL 298

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

TIGR_CMR|DET_0401 DET_0401 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 113 (44.8 bits), Expect = 0.00039, P = 0.00039
 Identities = 44/215 (20%), Positives = 88/215 (40%)

Query:    49 TLVTAYLLLVLGFIGLTWASVEAG-NLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLC 107
             +L+  + L     +   + +++ G  +  I ++  A+    +Y   P RL+Y GLGE + 
Sbjct:   103 SLLVIFSLYFFALLCAIYMALDMGWGVMWIAVIGAAI--SILYSAKPMRLAYHGLGELMM 160

Query:   108 XXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNV 167
                         Y +           +   VL   ++ GL    ++  +     + DR  
Sbjct:   161 LIGYGPVLTAWGYFVHTGM-------VNRDVLLIGVIPGLCMWAMILINEIPDYQEDRAA 213

Query:   168 GKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP-LSCIFLCAMTSPIGKLVVSY 226
             GK +   RLG +    +   ++  LY+ + A+  +  +P LS I L  +  P+  + V  
Sbjct:   214 GKRNLTYRLGPKNAKNLFSISLAGLYTYILALVFTGVMPPLSAISLGGI--PLAVMAVRI 271

Query:   227 VEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT 261
                 + D  K+ MA    V  +++  A +  G++T
Sbjct:   272 AHRYYNDPIKVAMANKLMVIIYSVTTATVAIGMLT 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       264   0.00092  114 3  11 21  0.48    32
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.35u 0.11s 21.46t   Elapsed:  00:00:01
  Total cpu time:  21.35u 0.11s 21.46t   Elapsed:  00:00:01
  Start:  Sat May 11 00:57:42 2013   End:  Sat May 11 00:57:43 2013

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
PLN02922	315	PLN02922, PLN02922, prenyltransferase	1e-119
PRK07419	304	PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate oct	2e-56
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	2e-47
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	1e-15
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	7e-06
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	2e-05
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	7e-04
PRK06080	293	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate oct	7e-04
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	0.001
TIGR00751	284	TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octapr	0.003

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score =  342 bits (880), Expect = e-119
 Identities = 157/225 (69%), Positives = 181/225 (80%), Gaps = 3/225 (1%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSR G L  A   L LG  GL WAS+ AGN+R I+LL  A++CGY+YQCPPFRLSY+G
Sbjct: 91  LVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKG 150

Query: 102 LGEPLCFAAFGPFATTAFYLLLGS---TRENLCLSITATVLSASLLVGLTTSLILFCSHF 158
           LGEPLCFAAFGP ATTAFYL L S     E   L +T TVLSAS+LVGLTT+LILFCSHF
Sbjct: 151 LGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHF 210

Query: 159 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSP 218
           HQ++GDR VGKMSPLVRLGTE+GS VV+WAV++LYSLL A+GL +ALPL C  LC +T P
Sbjct: 211 HQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLP 270

Query: 219 IGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263
           +GKLVV +VE+NHKD  KIFMAKYYCVR HALFGAAL  GL+ AR
Sbjct: 271 LGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLAR 315

Length = 315

>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score =  183 bits (466), Expect = 2e-56
 Identities = 92/225 (40%), Positives = 131/225 (58%), Gaps = 11/225 (4%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEA-GNLRAIMLLTCAVICGYIYQCPPFRLSYQ 100
           L G+++     A L L+LG +G+   ++++   +  ++LL C +  GY+YQ PPFRL YQ
Sbjct: 88  LTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFL--GYLYQGPPFRLGYQ 145

Query: 101 GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 160
           GLGEPLCF AFGP A  A       +        +   L+AS+++GL TSLILFCSHFHQ
Sbjct: 146 GLGEPLCFLAFGPLAVAAALYSQTPSW-------SLIPLAASIILGLATSLILFCSHFHQ 198

Query: 161 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 220
           VE D   GK SP+VRLGT+RG+ ++ W V ++Y+L     L    P + + L  ++ P  
Sbjct: 199 VEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTL-LSLLSLPFA 257

Query: 221 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 265
             ++  V ENH    K+  +K+  VRFH   G  L  GLI A +L
Sbjct: 258 IKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL 302

Length = 304

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score =  159 bits (403), Expect = 2e-47
 Identities = 86/221 (38%), Positives = 117/221 (52%), Gaps = 11/221 (4%)

Query: 41  VLLGSRTGTLVTAYLLLVLGFIGLTWASVEA-GNLRAIMLLTCAVICGYIYQCPPFRLSY 99
            L GSR+     A   L++G +G+   S      + A++ L C +  GY+YQ PPFRL Y
Sbjct: 74  NLTGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFL--GYLYQGPPFRLGY 131

Query: 100 QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 159
           QGLGEP+C+  FGP A  A       +              AS+LVGL T+LILFCSHFH
Sbjct: 132 QGLGEPICWLCFGPLAIAAALYAQSQSFS-------LIPWKASILVGLATTLILFCSHFH 184

Query: 160 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPI 219
           QVE D   GK SP+VRLGT+  + +V W + + Y +L    +   LP + +   A     
Sbjct: 185 QVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLLALASIPWA 244

Query: 220 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 260
            KL +  V +NH +  +I   K+  VRFH L G  L  GL+
Sbjct: 245 VKL-IRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLL 284

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 12/164 (7%)

Query: 50  LVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFA 109
           L  A  LL    +     +  +  L  ++ L C    G +Y   PF L Y GLGE     
Sbjct: 98  LSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGV 156

Query: 110 AFGPFATT-AFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVG 168
            FGP     A+Y+  G         ++  +L  SL VG+  + IL  ++   +E D   G
Sbjct: 157 FFGPLIVLGAYYIQTGR--------LSWAILLPSLPVGILIANILLANNLRDIEEDIRNG 208

Query: 169 KMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 212
           K +  VRLG +    +  +A +++ + L  +            L
Sbjct: 209 KYTLAVRLGRKNARKL--YAALLVVAYLAIVIFVILGLFPVWGL 250

Length = 303

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 8/186 (4%)

Query: 55  LLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPF 114
           LLL L  + L            ++L    ++ G +Y  PP RL  + L   L        
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYS-PPLRLKRRPLLGELVVGLAFGL 131

Query: 115 ATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLV 174
                   +G         I + +L  +L V L +  IL  +    VEGDR  G  +  V
Sbjct: 132 LILLGAYAVGGD-------IPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPV 184

Query: 175 RLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDK 234
           RLG +R   +    +     LL  + L  A  L  + +  +   +          N ++ 
Sbjct: 185 RLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEP 244

Query: 235 GKIFMA 240
            + F+ 
Sbjct: 245 ARTFLF 250

Length = 259

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 55  LLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPF 114
           + L    + L W+ V    + A+ L    V     Y  PPF L Y+ LGE L F A+   
Sbjct: 97  IALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHM 156

Query: 115 ATT-AFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPL 173
                 Y+ LG        ++++  L A + +GL  +L+L  ++   +E D   G  +  
Sbjct: 157 LVMGLIYVWLG--------NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLA 208

Query: 174 VRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 207
           V  G  RG+ +  +A++  Y +L  + ++   PL
Sbjct: 209 VIFGR-RGAALYIFALLSPYVILQILLIAILTPL 241

Length = 296

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 54  YLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFG 112
           +  LVL   GL  A V  GN   ++     ++   IY  PP +L   G LG P    ++ 
Sbjct: 87  WNWLVLTVAGLLVALV-LGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYE 145

Query: 113 PFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSP 172
                A + +           +T   +  +L+  L    I+  + F  VEGDR +G  S 
Sbjct: 146 GLPWMAGHAIFAP--------LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSL 197

Query: 173 LVRLGTERGSVVV 185
            V +G +R ++V 
Sbjct: 198 PVMIGVKRAAIVA 210

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 83  AVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATT-AFYLLLGSTRENLCLSITATVLSA 141
            +    +Y   P    Y GLGE      FG       +YL  G+        + + V   
Sbjct: 122 CIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT--------VDSAVFLP 173

Query: 142 SLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 201
           +L  GL    +L  ++   +E DR  GK +  VRLG +    +   A ++  + L  + L
Sbjct: 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRL--HAALLALAYLCIVLL 231

Length = 293

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 50  LVTAYLLLVLGFIGLT-----WASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGE 104
           ++T  +LL +  I +      WA  E  N+  + L        +IY  PP +L   G   
Sbjct: 101 VITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALF--GSFIAFIYSAPPLKLKQNGW-- 156

Query: 105 PLCFAAFGPFATTAFYLLLGS-TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEG 163
                  G FA  A Y+ L       L   +   +   +L+  +    I   + F  VEG
Sbjct: 157 ------LGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEG 210

Query: 164 DRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSP 218
           DR +G  S  V  G E  + +   A+ I   L+ A  L+    L    L A+  P
Sbjct: 211 DRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIP 265

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|129834 TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 53  AYLLLVLGFI-GLTWASVEAGNLRA----IMLLTCAVICGYIYQCPPFRLSYQGLGEPLC 107
               + LG + GL  A + A NL      I L    +     Y        Y GLG+   
Sbjct: 83  LITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISV 142

Query: 108 FAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNV 167
              FGP A      L           +    +  ++  GL    +L  ++   +  D   
Sbjct: 143 LVFFGPLAVLGTQYLQA-------HRVDWVGILPAVATGLLACAVLNINNLRDIPTDARA 195

Query: 168 GKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC-IFLCAM 215
           GK +  VRLG  R  +  +  + +     F   L+  +   C +FL A 
Sbjct: 196 GKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVLFLLAA 244

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PLN02922	315	prenyltransferase	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.97
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.97
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.93
PLN00012	375	chlorophyll synthetase; Provisional	99.92
PRK12872	285	ubiA prenyltransferase; Reviewed	99.92
KOG4581	359	consensus Predicted membrane protein [Function unk	99.88
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.88
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.87
PRK13591	307	ubiA prenyltransferase; Provisional	99.86
PRK12875	282	ubiA prenyltransferase; Reviewed	99.84
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.82
PRK12884	279	ubiA prenyltransferase; Reviewed	99.81
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.8
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.77
PRK12871	297	ubiA prenyltransferase; Reviewed	99.76
PRK12888	284	ubiA prenyltransferase; Reviewed	99.74
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.74
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.74
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.73
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.72
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.68
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.68
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.66
PLN02878	280	homogentisate phytyltransferase	99.66
PRK12886	291	ubiA prenyltransferase; Reviewed	99.66
PRK13595	292	ubiA prenyltransferase; Provisional	99.66
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.66
PRK12882	276	ubiA prenyltransferase; Reviewed	99.65
PRK12874	291	ubiA prenyltransferase; Reviewed	99.63
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.61
PRK13106	300	ubiA prenyltransferase; Reviewed	99.43
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.32
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.3
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.29
PRK12876	300	ubiA prenyltransferase; Reviewed	99.22
PRK12895	286	ubiA prenyltransferase; Reviewed	99.2
PRK12873	294	ubiA prenyltransferase; Reviewed	98.97
PLN02776	341	prenyltransferase	98.71
PRK13592	299	ubiA prenyltransferase; Provisional	98.44
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	97.27
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	96.54
PRK08238	479	hypothetical protein; Validated	95.63
PRK12884	279	ubiA prenyltransferase; Reviewed	93.96
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	93.86
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	92.59
PRK12873	294	ubiA prenyltransferase; Reviewed	92.37
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	92.28
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	91.77
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	91.69
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	91.59
PRK12882	276	ubiA prenyltransferase; Reviewed	91.59
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	91.17
PRK12895	286	ubiA prenyltransferase; Reviewed	90.23
PRK04375	296	protoheme IX farnesyltransferase; Provisional	90.12
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	90.06
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.94
PRK13362	306	protoheme IX farnesyltransferase; Provisional	89.86
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.4
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	89.26
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	88.04
PRK12875	282	ubiA prenyltransferase; Reviewed	87.98
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	87.97
PRK12876	300	ubiA prenyltransferase; Reviewed	87.7
PRK12886	291	ubiA prenyltransferase; Reviewed	87.02
PRK12872	285	ubiA prenyltransferase; Reviewed	86.73
PRK13592	299	ubiA prenyltransferase; Provisional	85.97
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.68
PLN02776	341	prenyltransferase	85.65
PRK08238	479	hypothetical protein; Validated	85.48
PRK12888	284	ubiA prenyltransferase; Reviewed	85.41
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	85.36
PRK13106	300	ubiA prenyltransferase; Reviewed	85.17
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	84.98
PRK13105	282	ubiA prenyltransferase; Reviewed	84.95
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.73
PRK13591	307	ubiA prenyltransferase; Provisional	84.12
PLN00012	375	chlorophyll synthetase; Provisional	84.11
PRK13595	292	ubiA prenyltransferase; Provisional	84.02
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	83.96
PRK12871	297	ubiA prenyltransferase; Reviewed	82.47

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=2.8e-50  Score=374.49  Aligned_cols=248  Identities=36%  Similarity=0.569  Sum_probs=228.1

Q ss_pred             hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhch
Q 023874           10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGN   73 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~-lGl~l~~~~~~g   73 (276)
                      .++++||.++++++.+.+..+               .|+++++...|.++++|++++.+..|+++++ +|+++  .+.+|
T Consensus        41 ~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L--~~~~g  118 (304)
T PRK07419         41 ETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAI--ALQSD  118 (304)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccccCcHHHHHHHHHHHHHHHHHHHHHH--HHhhc
Confidence            347899999999999999871               4444455567888899999999999999999 59998  67899


Q ss_pred             HHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHH
Q 023874           74 LRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLIL  153 (276)
Q Consensus        74 ~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~il  153 (276)
                      |+++++|++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++       +++..++.|+|.++.++++|
T Consensus       119 ~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL  191 (304)
T PRK07419        119 WTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLIL  191 (304)
T ss_pred             HHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998       88899999999999999999


Q ss_pred             HhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023874          154 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD  233 (276)
Q Consensus       154 l~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~  233 (276)
                      ++||+||+|+||++||||+||++|+|+|+++|..+...+|++++..+..|..|+++++ +++++|++.+..|.+++++++
T Consensus       192 ~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll-~ll~lPl~~~~~~~~~~~~~~  270 (304)
T PRK07419        192 FCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL-SLLSLPFAIKLIRLVRENHDQ  270 (304)
T ss_pred             HHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999998876 699999999999999887555


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023874          234 KGKIFMAKYYCVRFHALFGAALVAGLITARILVT  267 (276)
Q Consensus       234 ~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~~  267 (276)
                      ++++.+.+++|++.++++++++++|++++..+||
T Consensus       271 ~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~~~  304 (304)
T PRK07419        271 PEKVSNSKFIAVRFHFWSGLLLSLGLILAYLLPK  304 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            6778889999999999999999999999888654

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=3.3e-49  Score=364.45  Aligned_cols=241  Identities=34%  Similarity=0.555  Sum_probs=222.5

Q ss_pred             hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhch
Q 023874           10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGN   73 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~-lGl~l~~~~~~g   73 (276)
                      +++++||.++++++++++.++               +|+++++..+|.++++++++..+..++++++ +|+++  +..+|
T Consensus        28 ~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L--~~~~~  105 (285)
T TIGR02235        28 QGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFWLANFFLLIGLVGIAAL--SWRWQ  105 (285)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHHHHHHHHHHHHHHHHHHHH--HHHhh
Confidence            457999999999999998882               4555566677888999999999999999998 59987  67889


Q ss_pred             HHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHH
Q 023874           74 LRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLIL  153 (276)
Q Consensus        74 ~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~il  153 (276)
                      |+++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|+++       +++..++.|+|.++.++++|
T Consensus       106 ~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL  178 (285)
T TIGR02235       106 ITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLIL  178 (285)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998       88999999999999999999


Q ss_pred             HhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023874          154 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD  233 (276)
Q Consensus       154 l~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~  233 (276)
                      ++||+||+|+|+++||||++||+|+|+|+++|..+...+|++++..+..|..||++++ +++++|++.+..|++++++++
T Consensus       179 ~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll-~ll~lPl~~~~~~~~~~~~~~  257 (285)
T TIGR02235       179 FCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL-ALASIPWAVKLIRLVRQNHNN  257 (285)
T ss_pred             HhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999998876 699999999999999876556


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 023874          234 KGKIFMAKYYCVRFHALFGAALVAGLI  260 (276)
Q Consensus       234 ~~~~~~~~~~t~k~~~l~~~ll~igl~  260 (276)
                      +++..+.+++|++.++++++++++|++
T Consensus       258 ~~~l~~~l~~t~~~~~~~g~l~~~g~~  284 (285)
T TIGR02235       258 PEQISNCKFIAVRFHFLSGILLTLGLL  284 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677888999999999999999999976

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=100.00  E-value=5.6e-48  Score=360.65  Aligned_cols=253  Identities=64%  Similarity=1.042  Sum_probs=219.4

Q ss_pred             hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 023874           10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNL   74 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~lGl~l~~~~~~g~   74 (276)
                      .++++||.++++++++++.++               .|++..+..+|.++++|+++++++.|++++++|+++....++||
T Consensus        44 ~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~  123 (315)
T PLN02922         44 QTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNI  123 (315)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccCh
Confidence            348999999999999999982               33332233457888999999999999999998776622224789


Q ss_pred             HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCc---cccccccchHHHHHHHHHHHHHHHH
Q 023874           75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGST---RENLCLSITATVLSASLLVGLTTSL  151 (276)
Q Consensus        75 ~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~---~~~~~~~~~~~~ll~slp~~l~~~~  151 (276)
                      +++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|++.   .+....+++++.++.|+|.++++++
T Consensus       124 ~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~  203 (315)
T PLN02922        124 RVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTL  203 (315)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999882   1111223678889999999999999


Q ss_pred             HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023874          152 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH  231 (276)
Q Consensus       152 ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~  231 (276)
                      +|++||+||+|+||++||||++|++|+|+|+++|.++...+|++++..+..+..|+++++..++++|++.+..+.+.+++
T Consensus       204 iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~  283 (315)
T PLN02922        204 ILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNH  283 (315)
T ss_pred             HHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999998865446888999999998887765


Q ss_pred             cCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          232 KDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       232 ~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      +++.++.+.+++|+|.++++++++++|++++
T Consensus       284 ~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~  314 (315)
T PLN02922        284 KDNAKIFMAKYYCVRLHALFGAALALGLVLA  314 (315)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5577788888999999999999999999764

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.4e-46  Score=344.03  Aligned_cols=246  Identities=20%  Similarity=0.298  Sum_probs=216.6

Q ss_pred             hhhhcccCchhhHHhhhhhhhcc---------------cCCcc--eeeeecccCC----HHHHHHHHHHHHHHHH-HHHH
Q 023874            8 LFIYSKVCPRATFLLFCPSVLYS---------------KESHW--LVISFVLLGS----RTGTLVTAYLLLVLGF-IGLT   65 (276)
Q Consensus         8 ~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~--~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~   65 (276)
                      .++++.++|+.+++|++++..++               .|+|+  ++.+.|++++    ++.+...+..++..++ +|++
T Consensus        35 ~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~  114 (303)
T COG1575          35 FWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVI  114 (303)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35566899999999999999881               44422  4566777775    4556666666665555 4777


Q ss_pred             HHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHH
Q 023874           66 WASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLV  145 (276)
Q Consensus        66 l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~  145 (276)
                      .  ...+||.++.+|.+|+++|++||+||+|++|+|+||++|+++||++++.|+||+|+++       ++|..++.|+|+
T Consensus       115 ~--~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~  185 (303)
T COG1575         115 L--AALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPV  185 (303)
T ss_pred             H--HHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHH
Confidence            5  6788999999999999999999999999999999999999999999999999999998       899999999999


Q ss_pred             HHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHH
Q 023874          146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS  225 (276)
Q Consensus       146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~  225 (276)
                      ++.+++||++||+||+|+|+++||+|+|||+|+++++.+|..+...+|++.++..+.+..|++.++ .++++|+++|..|
T Consensus       186 gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll-~ll~~Pl~ir~~r  264 (303)
T COG1575         186 GILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL-FLLALPLAIRAAR  264 (303)
T ss_pred             HHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999898988888866 5999999999999


Q ss_pred             HHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          226 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                      +++++++ +.+..+.++++.|...++++++.+|++++.+
T Consensus       265 ~v~~~~~-~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l  302 (303)
T COG1575         265 PVRQNQV-PATLVPMLKNTVKANLLWNLLLAVGILLSQL  302 (303)
T ss_pred             HHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9998865 4467778899999999999999999887643

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=3.3e-46  Score=349.11  Aligned_cols=244  Identities=17%  Similarity=0.137  Sum_probs=216.5

Q ss_pred             hhcccCchhhHHhhhhhhhc---------------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023874           10 IYSKVCPRATFLLFCPSVLY---------------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV   69 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~---------------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~~   69 (276)
                      +++++||.+.++++.+++..               ++|+++++...|.+++    +|+++..++.|+++++ +|+++  +
T Consensus        32 ~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L--~  109 (317)
T PRK13387         32 VAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYL--C  109 (317)
T ss_pred             hCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            56789999999999998866               2444444445565553    7899999999999999 59998  6


Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHH----------
Q 023874           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVL----------  139 (276)
Q Consensus        70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~l----------  139 (276)
                      +.+||+++.+|++|++++++||+||+|+||+|+||++++++||++++.++||+|++.       ++++.+          
T Consensus       110 ~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~-------~~~~~~~~~~~~~~~~  182 (317)
T PRK13387        110 MNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNT-------ITIESLLFQGEMFTIQ  182 (317)
T ss_pred             HHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCC-------CchHHHHhcccchhhc
Confidence            789999999999999999999999999999999999999999999999999999987       344333          


Q ss_pred             ----------HHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023874          140 ----------SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC  209 (276)
Q Consensus       140 ----------l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~  209 (276)
                                +.|+|.++.++++|++||+||+|+||++||||+|+++|+|+|+++|..+...+|++++..+..|.+|+++
T Consensus       183 ~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~  262 (317)
T PRK13387        183 GNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA  262 (317)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                      4899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          210 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  263 (276)
Q Consensus       210 ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~  263 (276)
                      ++ +++++|++.+..|.++++++++++..+..+++.+.+..+++++++|++++.
T Consensus       263 ll-~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~  315 (317)
T PRK13387        263 LL-SFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQY  315 (317)
T ss_pred             HH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            76 599999999999999887556666777888899999999999999998854

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=1.7e-45  Score=339.68  Aligned_cols=239  Identities=15%  Similarity=0.166  Sum_probs=210.4

Q ss_pred             hhhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHH
Q 023874            9 FIYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWAS   68 (276)
Q Consensus         9 ~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~   68 (276)
                      |+.+++||.+.++++++++..+               .|+++.....|.+++    +|+++..++.++++++ +|+++  
T Consensus        20 ~~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l--   97 (284)
T TIGR00751        20 AWLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVL--   97 (284)
T ss_pred             HHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3445999999999999988772               232211122344433    6899999999999998 59998  


Q ss_pred             HhhchH------HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHH
Q 023874           69 VEAGNL------RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSAS  142 (276)
Q Consensus        69 ~~~~g~------~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~s  142 (276)
                      ++.+||      +++.+|++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++       ++++.++.|
T Consensus        98 ~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~s  170 (284)
T TIGR00751        98 ALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPA  170 (284)
T ss_pred             HHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHH
Confidence            567787      7889999999999999999999999999999999999999999999999998       889999999


Q ss_pred             HHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Q 023874          143 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKL  222 (276)
Q Consensus       143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~  222 (276)
                      +|.++++++++++||+||+|+|+++||||++||+|+|+|+++|..+...+|++.+..+..+..|+++++ +++++|++.+
T Consensus       171 l~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~ll-~ll~lPl~~~  249 (284)
T TIGR00751       171 VATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVL-FLLAAPLLLK  249 (284)
T ss_pred             HHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888888889998876 5999999999


Q ss_pred             HHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 023874          223 VVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG  258 (276)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~ig  258 (276)
                      ..|.++++ ++++++.+..++|++.++++++++++|
T Consensus       250 ~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig  284 (284)
T TIGR00751       250 AAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG  284 (284)
T ss_pred             HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999875 456778889999999999999998875

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2e-38  Score=293.97  Aligned_cols=239  Identities=18%  Similarity=0.247  Sum_probs=204.4

Q ss_pred             hhcccCchhhHHhhhhhhhcc---------------cCCcceee-eecccC----CHHHHHHHHHHHHHHHH-HHHHHHH
Q 023874           10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVI-SFVLLG----SRTGTLVTAYLLLVLGF-IGLTWAS   68 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~-~~n~~g----~~~~v~~~~~~~l~~~~-lGl~l~~   68 (276)
                      .++++||.+.++++++.+..+               .|+++... ..|.+.    ++++++..+..++.+++ +|+++  
T Consensus        33 ~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l--  110 (296)
T PRK05951         33 LFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSL--  110 (296)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHH--
Confidence            347999999999999988771               22220000 122222    26899999999988888 58887  


Q ss_pred             HhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHH
Q 023874           69 VEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLT  148 (276)
Q Consensus        69 ~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~  148 (276)
                      ...++|+.+.+|++|+++++.||+||+|+||+|+||+.++++||++++.|++|+|++.       +++..+..|+|.+++
T Consensus       111 ~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~  183 (296)
T PRK05951        111 VLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLL  183 (296)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999998       788899999999999


Q ss_pred             HHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023874          149 TSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE  228 (276)
Q Consensus       149 ~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~  228 (276)
                      +++++++||+||+|+||++||||+|+++|+|++ ++|......+|+.++..+..|..|+++++ .++++|++.+..+...
T Consensus       184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ll~lp~~~~~~~~~~  261 (296)
T PRK05951        184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLW-ALLSLLVAYALCLWQL  261 (296)
T ss_pred             HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 89999999999999999999999998766 5999999999888776


Q ss_pred             hhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          229 ENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                      ++. ++++ .   +.+.|.+..+++++++|++++..
T Consensus       262 ~~~-~~~~-~---~~~~~~~~~~g~l~~~~~~l~~~  292 (296)
T PRK05951        262 RKF-PPDP-D---EATVQLFMLFGYLYILATLLSAL  292 (296)
T ss_pred             hhC-cccc-c---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            653 3333 2   25999999999999999998754

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=6.4e-37  Score=282.70  Aligned_cols=242  Identities=19%  Similarity=0.266  Sum_probs=208.9

Q ss_pred             hhcccCchhhHHhhhhhhhc-----------c----cCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023874           10 IYSKVCPRATFLLFCPSVLY-----------S----KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV   69 (276)
Q Consensus        10 ~~~~~~~~~~~~~f~~~~~~-----------~----~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~~   69 (276)
                      ..+++||.+.++.+++++..           |    .|++..+...|.+.+    +|+++..+..++++++ +|+++  .
T Consensus        31 ~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l--~  108 (293)
T PRK06080         31 WLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYL--V  108 (293)
T ss_pred             HcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            34678999999988887665           1    132222222333332    6889999999998888 59887  4


Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023874           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT  149 (276)
Q Consensus        70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~  149 (276)
                      ...+++.+.+|+++++++++||.||+|+||+|+||+.+++.+|++++.+++|+|+++       ++++.++.++|.++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~  181 (293)
T PRK06080        109 AVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT-------VDSAVFLPALPCGLLI  181 (293)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999987       7888999999999999


Q ss_pred             HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023874          150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE  229 (276)
Q Consensus       150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~  229 (276)
                      .+++++||+||+|+||++||||+|+++|+|++++++..+..++|+..+..+..+..|++.++ +++++|.+.+.++.+.+
T Consensus       182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ll-~ll~~p~~~~~~~~~~~  260 (293)
T PRK06080        182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGLL-FLLSLPLAVKAARPVLR  260 (293)
T ss_pred             HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998989998776 69999999999999887


Q ss_pred             hccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          230 NHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       230 ~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      ++ ++++..+..+.+++.+..+++++++|++++
T Consensus       261 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK06080        261 KQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS  292 (293)
T ss_pred             cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            64 445555677789999999999999998864

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.97  E-value=4.5e-29  Score=229.68  Aligned_cols=226  Identities=17%  Similarity=0.215  Sum_probs=172.6

Q ss_pred             cCchhhHH-hhhhhhhc-----------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHH
Q 023874           14 VCPRATFL-LFCPSVLY-----------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRA   76 (276)
Q Consensus        14 ~~~~~~~~-~f~~~~~~-----------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~   76 (276)
                      +||..+++ .+.+....           |.|++......|.+.+    +|+++..+..+..++++ |+++     ++|..
T Consensus        34 ~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l-----~~~~~  108 (283)
T TIGR01476        34 EHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVL-----GNWLI  108 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            67877776 33344333           3333322223444443    68899998888888873 6543     45655


Q ss_pred             HHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023874           77 IMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC  155 (276)
Q Consensus        77 l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~  155 (276)
                      ..++.++++.++.||.||+|+||+| +||+.+++++|..+..+++.++. .       +++..++.+++.++++.++++.
T Consensus       109 ~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~~i~~~  180 (283)
T TIGR01476       109 VLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA-P-------LTWQSVVVALIYSLGAHGIMTL  180 (283)
T ss_pred             HHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC-C-------CCHHHHHHHHHHHHHHHHHHHH
Confidence            7788889999999999999999998 79999999998887777776653 3       6778888999999999999999


Q ss_pred             cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcc
Q 023874          156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKG  235 (276)
Q Consensus       156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~  235 (276)
                      ||+||+|+||++||||+|+++|+|++++++..+...+|+..+........|+++.++.++..|...+..+.+++++   +
T Consensus       181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~~---~  257 (283)
T TIGR01476       181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRDP---Q  257 (283)
T ss_pred             HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhCh---H
Confidence            9999999999999999999999999999999999888877766555444676533334777888888888777642   2


Q ss_pred             hhhhhHHHHHHHHHHHHHHH
Q 023874          236 KIFMAKYYCVRFHALFGAAL  255 (276)
Q Consensus       236 ~~~~~~~~t~k~~~l~~~ll  255 (276)
                      +..+..+.|++.+++++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       258 QNYVRYNATANPFYVLGMLA  277 (283)
T ss_pred             HhhHHhhhhcHHHHHHHHHH
Confidence            22334567999999999776

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.97  E-value=6.7e-29  Score=231.38  Aligned_cols=196  Identities=20%  Similarity=0.214  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhh--chHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHH
Q 023874           46 RTGTLVTAYLLLVLGF-IGLTWASVEA--GNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYL  121 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~--~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~  121 (276)
                      ++++...++.++++++ +|+++.. ..  .+++.+.+|++|++++++||+||+|+||+| +||+.++..+|..++.+++ 
T Consensus        98 ~~~a~~~~~~l~~~~~~lg~~l~~-~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-  175 (306)
T TIGR02056        98 EPEVITQIVLLFIAGIAIAFILDL-WAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH-  175 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence            6889999999999888 5887622 22  247889999999999999999999999998 7999999888877776655 


Q ss_pred             HhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023874          122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  201 (276)
Q Consensus       122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~  201 (276)
                      .++++       +++..++.+++.++++.++++.||+||+|+|+++||||+|+++|+|++++++..+...++.+.+....
T Consensus       176 a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~  248 (306)
T TIGR02056       176 ALFGE-------LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLL  248 (306)
T ss_pred             HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666       78888899999999999999999999999999999999999999999999999988888877666554


Q ss_pred             h-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHH
Q 023874          202 S-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAA  254 (276)
Q Consensus       202 ~-g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~l  254 (276)
                      . +..|++.++ .++++|.+.+..|.++++   +.+..+..+.+++.....|.+
T Consensus       249 ~~~~~~~~~ll-~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  298 (306)
T TIGR02056       249 AIGENLYAAAL-VALIIPQITFQDKYFLKD---PLKNDVKYQASAQPFLVLGIF  298 (306)
T ss_pred             HhcCcHHHHHH-HHHHHHHHHHHHHHHHhC---hHhhCcchhhhhhHHHHHHHH
Confidence            4 455555455 489999999999988763   222333455677776665543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.2e-28  Score=227.20  Aligned_cols=196  Identities=15%  Similarity=0.096  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH--HHHhhhhHHHHHHHHH
Q 023874           46 RTGTLVTAYLLLVLGFI--GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYL  121 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l--Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~--~v~l~fG~l~~~g~~~  121 (276)
                      ++++++.+..+.+++..  |+++  ....+|+.+.+|.++++.++.||+||.|+||+|+||.  .++.++|+ .+.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~l--~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~  153 (282)
T PRK13105         77 DRAMHRTTLWASVVTTVPFLVVL--LAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVL  153 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHH
Confidence            67787777766666653  6665  5566899999999999999999999999999999999  77888887 7888888


Q ss_pred             HhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023874          122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  201 (276)
Q Consensus       122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~  201 (276)
                      + ++.       +++..++.+.+.++++.++...||+||+|+||++||||+|+++|+|+|.+++..+...++++.+.   
T Consensus       154 ~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~---  222 (282)
T PRK13105        154 A-GAP-------FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA---  222 (282)
T ss_pred             h-hcc-------ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence            7 554       67778889999999999999999999999999999999999999999999999999999987763   


Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHH-hhccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 023874          202 SRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGL  259 (276)
Q Consensus       202 ~g~lP~~~ll~~ll~lPla~~~~~~~~-~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl  259 (276)
                      .+. |. .++ .++++|++.+..+.+. ++ +++++..+..+++++.++++|+++++..
T Consensus       223 ~~~-~~-~~l-~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~  277 (282)
T PRK13105        223 LPW-PG-WLA-AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLL  277 (282)
T ss_pred             HHh-HH-HHH-HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            232 22 334 5899999999998887 55 4567788899999999999999998843

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.93  E-value=2.4e-24  Score=201.43  Aligned_cols=199  Identities=19%  Similarity=0.197  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHH-
Q 023874           46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLL-  122 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v-  122 (276)
                      +++++..+..++++|+. |..      .++....+++.+++.++.||.||+++||++ +||+.+++++|.++..++++. 
T Consensus       109 ~~~a~~~~~~l~~~~~~l~~~------l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~  182 (314)
T PRK07566        109 LRWVLYLIAVLTVLGLAVAYL------LGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF  182 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence            67888888888777763 332      378888889999999999999999999999 699999999987776555444 


Q ss_pred             hcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh
Q 023874          123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS  202 (276)
Q Consensus       123 ~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~  202 (276)
                      +++.       .++..++.+++.++++.+++..||+||+|+||++|+||+|+++|++++++++..+...+|++++.....
T Consensus       183 ~~~~-------~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~  255 (314)
T PRK07566        183 GAGL-------PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLA  255 (314)
T ss_pred             ccCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4334       678888999999999999999999999999999999999999999999999999998998877554333


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          203 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       203 g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      ...+++..+..++..|.+....+..+ ++++++   ...+.+.+++.+++++ ..++.++
T Consensus       256 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ll-~~~~~~~  310 (314)
T PRK07566        256 WGQPLYAAIVGLLLIPQITLQDRLLR-DPLERD---VWYNASAQPFYVLGML-VTALAIR  310 (314)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHhh-ChhhcC---hhhhhhhhHHHHHHHH-HHHHHhc
Confidence            23344332334677888877766633 212222   2334567777766554 3455443

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.92  E-value=3.2e-23  Score=197.96  Aligned_cols=198  Identities=20%  Similarity=0.198  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHH-hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHH
Q 023874           46 RTGTLVTAYLLLVLGF-IGLTWASV-EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLL  122 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~-lGl~l~~~-~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v  122 (276)
                      ++++...+..++++++ +|+++... ...++..+.+++++++.++.||+||+++||+|+ |++..+..+|.+++++++ .
T Consensus       167 ~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a  245 (375)
T PLN00012        167 ENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-A  245 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-H
Confidence            5777777777777776 46664211 124678889999999999999999999999997 999988888877776665 5


Q ss_pred             hcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh
Q 023874          123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS  202 (276)
Q Consensus       123 ~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~  202 (276)
                      .++.       +++..++.+++.+++..++++.||++|+|+|+++|++|+||++|++++++++..+..+..+..+.....
T Consensus       246 ~~g~-------~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~  318 (375)
T PLN00012        246 LFGT-------LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLA  318 (375)
T ss_pred             HcCC-------CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666       788888999999999999999999999999999999999999999999999876666665544433332


Q ss_pred             -hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHH
Q 023874          203 -RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL  255 (276)
Q Consensus       203 -g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll  255 (276)
                       +..++..++ .++.+|......+.+.+   ++.+..+..+.+++.+++++++.
T Consensus       319 ~~~~~y~~~~-~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~  368 (375)
T PLN00012        319 IGKPYYALAL-LGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLV  368 (375)
T ss_pred             HhHHHHHHHH-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence             233333333 47788888888876655   34334445566889999888764

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=3.1e-23  Score=190.46  Aligned_cols=196  Identities=19%  Similarity=0.170  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcc-ccccc-chHHHHHhhhhHHHHHHHHHHh
Q 023874           47 TGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFR-LSYQG-LGEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        47 ~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~-l~y~g-lGE~~v~l~fG~l~~~g~~~v~  123 (276)
                      ++.......+..+++ +|+++ .....||..+.+++++.+.++.||.||.| +||.| +||+.++..+|..++.++++.+
T Consensus        77 ~~~~~~~~~l~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~  155 (285)
T PRK12872         77 TKAYGLFLLLNVLGLYLGAYL-LAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence            455556655555555 47765 23456899999999999999999999874 88866 8999999999999999998888


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  203 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g  203 (276)
                      ++.       +++..++.++...+.+......||+||+|+|+++|++|+|+++|+|++++++..+...+++..+.....|
T Consensus       156 ~~~-------~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T PRK12872        156 QLT-------IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG  228 (285)
T ss_pred             ccc-------cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            765       5667778888888888888889999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHH
Q 023874          204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA  253 (276)
Q Consensus       204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~  253 (276)
                      ..|++.+.+ ++..|......+.+.++ +++++.... ....|.+++.|+
T Consensus       229 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~  275 (285)
T PRK12872        229 LLPLLLLVL-LLLLAYVLYYIIKLFAA-DDKKDLLYL-SLLDKEHMLLGL  275 (285)
T ss_pred             HhhHHHHHH-HHHHHHHHHHHHHHHhc-ccccchhHH-HHHhHHHHHHHH
Confidence            889887664 66677777666666554 344443322 123445444444

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.88  E-value=4.2e-23  Score=182.95  Aligned_cols=216  Identities=18%  Similarity=0.253  Sum_probs=172.9

Q ss_pred             ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHH
Q 023874           40 FVLLGSRTGTLVTAYLLLVLGFIGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFA  115 (276)
Q Consensus        40 ~n~~g~~~~v~~~~~~~l~~~~lGl~l~~~~~----~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~  115 (276)
                      +..+-.+..|.+.+.....+|+.|.....+..    ....++.+|.++  .++.||+| +.+||..+||+...+.|||+.
T Consensus       139 vd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls--~sflytgg-igfkyialgdliili~fgpia  215 (359)
T KOG4581|consen  139 VDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLS--GSFLYTGG-IGFKYIALGDLIILILFGPIA  215 (359)
T ss_pred             HHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcc--cceeEecc-cceEEEeccCEEEEEeechHH
Confidence            33344456677777776666664333211222    123567788665  79999998 599999999999999999999


Q ss_pred             HHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHH
Q 023874          116 TTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL  195 (276)
Q Consensus       116 ~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~  195 (276)
                      ++.+|-.|+|+       ..|..+..++|.++-+-+|+++||.||.|.||++|..|+++.+|+..+..+|..+.+++|.+
T Consensus       216 vlfaf~~q~g~-------l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~l  288 (359)
T KOG4581|consen  216 VLFAFAIQTGH-------LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLL  288 (359)
T ss_pred             HHHHHHHhcCc-------eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHH
Confidence            99999999998       66777889999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Q 023874          196 LFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK  272 (276)
Q Consensus       196 ~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~~~~~~~  272 (276)
                      ..++..-  ...|. +++++++|.+++.-|+++.++ .-+++. .  +|+|.++++|++++.+..++.-+++--.||
T Consensus       289 f~i~~~~--~si~~-~lplltip~afqiek~frneq-a~~~lp-~--qtakln~~~gi~yv~~~~~ahqlpa~~l~k  358 (359)
T KOG4581|consen  289 FFIFALH--CSISF-ALPLLTIPMAFQIEKQFRNEQ-AFHKLP-Q--QTAKLNFFFGIFYVFACCCAHQLPAFGLPK  358 (359)
T ss_pred             HHHHHHH--HHHHH-HhHHhhchhHHhHHHHhhhHh-hhhhcc-h--hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence            7766542  34443 448999999999999997753 234333 3  699999999999999999987777766665

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.88  E-value=1.9e-21  Score=181.64  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHh-hhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFA-AFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l-~fG~l~~~g~~~v~~  124 (276)
                      +++.+..+..+.++|+   .+  ....|++.+.++.++.++++.||.||+|+||+|++|..+.. ..|.....|.++...
T Consensus        97 ~~~a~~~~~~~~~lal---~l--a~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~  171 (308)
T PRK12887         97 RRQGQRIVIITGILAL---IL--AALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ  171 (308)
T ss_pred             HHHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666555544444   33  34568899999999999999999999999999999866544 446555566544321


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      .... ....++...++.+++..+++.++.+.||+||+|+||++|+||+|+++|+|++.+++..+..++|+..+.....+.
T Consensus       172 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~  250 (308)
T PRK12887        172 WLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSL  250 (308)
T ss_pred             HHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1100 011266777889999999999999999999999999999999999999999999999999999999888866655


Q ss_pred             hhHH
Q 023874          205 LPLS  208 (276)
Q Consensus       205 lP~~  208 (276)
                      .++.
T Consensus       251 ~~~~  254 (308)
T PRK12887        251 PTVN  254 (308)
T ss_pred             hhHH
Confidence            4443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.87  E-value=9.5e-21  Score=178.45  Aligned_cols=174  Identities=18%  Similarity=0.230  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHH
Q 023874           46 RTGTLVTAYLLLVLGF-IGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAF  119 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~----~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~  119 (276)
                      +++++..+..+..+|+ +|+++  ...    .++.++..+++++++++.||.||+++||+++ ||+.+++++|..++.+.
T Consensus        94 ~~~al~~~~~l~~la~~lg~~L--~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~  171 (331)
T PRK12392         94 EKEALWNSIIVLLLAIGLGVWL--GLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA  171 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH
Confidence            6888889988888888 58876  333    2566777788999999999999999999985 99999999997666544


Q ss_pred             HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHH
Q 023874          120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI  199 (276)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~  199 (276)
                       ++..++       +++..++.+++.++++.+....||++|+|+|++.|+||+|+++|++++.++......++.++.+..
T Consensus       172 -~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~  243 (331)
T PRK12392        172 -NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWL  243 (331)
T ss_pred             -HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHH
Confidence             444455       677778889999999999999999999999999999999999999999887766654555555444


Q ss_pred             HHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023874          200 GLSRALPLSCIFLCAMTSPIGKLVVSYVEE  229 (276)
Q Consensus       200 ~~~g~lP~~~ll~~ll~lPla~~~~~~~~~  229 (276)
                      ...-..++......++..|......+..++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~  273 (331)
T PRK12392        244 AWSWGFTVLMYFILVGLVLNIVIQIQLYRD  273 (331)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333222322222223444555444444433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.86  E-value=9.9e-21  Score=175.84  Aligned_cols=162  Identities=18%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccC----Cccc---ccccchHHHHHhhhhHHHHHHHHH
Q 023874           50 LVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYL  121 (276)
Q Consensus        50 ~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~----P~~l---~y~glGE~~v~l~fG~l~~~g~~~  121 (276)
                      ++.+..+.+++. +|+++  .+..||++  +++++.++++.||.|    |.|+   ++.|+||+++++++|..++.+...
T Consensus        98 ~~~a~~ls~la~llGl~L--a~~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~  173 (307)
T PRK13591         98 KKIGLLVSLLAFLLGTYI--LAMDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGS  173 (307)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHh
Confidence            334555555555 58887  56778754  578899999999998    8888   667799999999999877644211


Q ss_pred             HhcCccccccccchHHHHHHHHHHHHHHHH----HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHH
Q 023874          122 LLGSTRENLCLSITATVLSASLLVGLTTSL----ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF  197 (276)
Q Consensus       122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~----ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~  197 (276)
                      . ++.            +..+++.++....    ....||+||+|+|+++||+|+|+++|++++++++..+..++|++++
T Consensus       174 ~-~~~------------~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li  240 (307)
T PRK13591        174 Y-CGS------------LIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLG  240 (307)
T ss_pred             h-hhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence            1 111            1223334444422    3368999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023874          198 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE  229 (276)
Q Consensus       198 ~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~  229 (276)
                      ..+..|.+|+..... +-+++.-.--.+.+.+
T Consensus       241 ~~~~~g~l~~~~~~~-~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        241 IALIFGVIAFEPIIL-LYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHHHHhccCchhh-HHHHHHHHHHHHHHcC
Confidence            999999998765442 4456555544444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=2.8e-19  Score=165.11  Aligned_cols=188  Identities=14%  Similarity=0.150  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhchH--HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023874           47 TGTLVTAYLLLVLGF-IGLTWASVEAGNL--RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        47 ~~v~~~~~~~l~~~~-lGl~l~~~~~~g~--~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~  123 (276)
                      +++......+.+++. +|+.+  ....++  +.+.+  ..++.++.||+||+|+||+|++|..++..+ .+++.++|++|
T Consensus        87 ~s~~~~~~~~~~l~~~l~l~l--~~~~~~~~~~~ll--~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~  161 (282)
T PRK12875         87 YRGDRRVLVAVALSGALALAF--LLVLPPAAWPALL--AFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALV  161 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHH--HHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHH
Confidence            344444444444343 46665  223233  33333  357899999999999999999998763222 47778999999


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  203 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g  203 (276)
                      +++       .++..+..+  .++++.++...||+||+|+|+++||||+|+++|+|+++++......++-...+..   +
T Consensus       162 tg~-------~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~---~  229 (282)
T PRK12875        162 SGS-------LPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAV---D  229 (282)
T ss_pred             cCC-------CcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHH---H
Confidence            887       555554444  4799999999999999999999999999999999999988877766665544332   2


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023874          204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT  261 (276)
Q Consensus       204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l  261 (276)
                        +...++  +...|...-.   +.....+.++.-   ++--..+...|.+++.+.+.
T Consensus       230 --~~~~~~--~~~~p~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  277 (282)
T PRK12875        230 --LRLGAL--LLVYPALVLA---ILRAGIAVDRAY---WWFPAINTVVGMLLTLGGLW  277 (282)
T ss_pred             --HHHHHH--HHHHHHHHHH---Hhccccchhhhh---HHHHHHHHHHHHHHHHHHHH
Confidence              222211  3445544322   222212223332   22333445666666666553

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.82  E-value=2.3e-18  Score=158.83  Aligned_cols=226  Identities=14%  Similarity=0.089  Sum_probs=155.4

Q ss_pred             cCchhhHHhhhhhhhc-----------c--cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 023874           14 VCPRATFLLFCPSVLY-----------S--KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRA   76 (276)
Q Consensus        14 ~~~~~~~~~f~~~~~~-----------~--~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~   76 (276)
                      .+|...++++++.+..           |  .|.+-.+...|.+.+    ++++...+..++++++   .+  ....++..
T Consensus        42 ~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~---~l--~~~~~~~~  116 (285)
T PRK12847         42 PDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIAL---VI--LLLLNKTT  116 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH---HH--HHHHhHHH
Confidence            6788888888877655           1  121111112333332    4666666555555544   33  23458888


Q ss_pred             HHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 023874           77 IMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS  156 (276)
Q Consensus        77 l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~N  156 (276)
                      +.+++++.+.++.||..   -+++++||+..++++|. .+.+++++++++       ++++.++.+++..+++.+....|
T Consensus       117 ~~~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~  185 (285)
T PRK12847        117 IYLSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQNQ-------LDIEAILLYIGCIFWTIGYDTIY  185 (285)
T ss_pred             HHHHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999852   23567899999999885 567788888887       77888899999999999999999


Q ss_pred             CCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcch
Q 023874          157 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK  236 (276)
Q Consensus       157 n~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~  236 (276)
                      +++|+|+|+++|++|+|+++|+|++.+++.......+++.......|..|++.+.. .+..-......+.. +. +++++
T Consensus       186 a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~~~~~~~-~~-~~~~~  262 (285)
T PRK12847        186 AYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAI-LAAAGIFYYQYKLL-DF-DNPAN  262 (285)
T ss_pred             HhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH
Confidence            99999999999999999999999999999988888888777777777666654332 22222212222221 21 22222


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          237 IFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       237 ~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                         ++ +.-|.+..++.++.++++++
T Consensus       263 ---~~-~~f~~~~~~~~l~~~~~~~~  284 (285)
T PRK12847        263 ---CM-YAFKANHYVGLLLFLGAVLG  284 (285)
T ss_pred             ---HH-HHHHHhHHHHHHHHHHHHhC
Confidence               22 24555667777776666653

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.81  E-value=6.3e-18  Score=155.06  Aligned_cols=188  Identities=18%  Similarity=0.124  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHh
Q 023874           46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~  123 (276)
                      +++.+..+..+.++++. +..      .++....+++++++.++.||.   ++||+++ ||+.+++.+|.....+.++++
T Consensus        81 ~~~a~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~  151 (279)
T PRK12884         81 RREALLLAILLFILGLIAAYL------ISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVG  151 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhC
Confidence            46777777777666663 332      377788888889999999985   6899985 999999998876666665554


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  203 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g  203 (276)
                      ..         +...+..+....+++....+.||++|+|+|+++|+||+|+++|+|++++++......++++.......+
T Consensus       152 ~~---------~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        152 EL---------NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             CC---------chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22         225667777888888888999999999999999999999999999999999888888887666666666


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHH
Q 023874          204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA  257 (276)
Q Consensus       204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~i  257 (276)
                      ..+++.++..+++.+.......++.++ +++++   .+  ..+.+...+.++++
T Consensus       223 ~~~~~y~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~  270 (279)
T PRK12884        223 IFNILYLAPVLVADLIFLYSAYSLLRS-QDRET---IR--KVRKITLTAMLLAL  270 (279)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHH---HH--HHHHHHHHHHHHHH
Confidence            655554333345555555444333343 22222   21  34555555555544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.80  E-value=1.7e-18  Score=154.83  Aligned_cols=105  Identities=24%  Similarity=0.392  Sum_probs=93.0

Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHH
Q 023874           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLT  148 (276)
Q Consensus        70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~  148 (276)
                      +..++..+.+..++.+.++.|| +|+++||+++ +|+.+++.+|.....+.+. +++.       .+...++.+.+.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~  158 (257)
T PF01040_consen   88 LLLGPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGGD-------PPPPPFLLAIFFFLL  158 (257)
T ss_pred             HhcCchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCCc-------ccHHHHHHHHHHHHH
Confidence            5667888888888888999999 9999999998 9999999999777766655 5554       467788889999999


Q ss_pred             HHHHHHhcCCCChHhhHhcCCcccceeechhhHHH
Q 023874          149 TSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV  183 (276)
Q Consensus       149 ~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~  183 (276)
                      ..++...||+||+|+|+++|++|+|+++|++++++
T Consensus       159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.77  E-value=5.9e-17  Score=149.24  Aligned_cols=231  Identities=16%  Similarity=0.088  Sum_probs=148.4

Q ss_pred             cccCchhhHHhhhhhhhcc-------------cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 023874           12 SKVCPRATFLLFCPSVLYS-------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNL   74 (276)
Q Consensus        12 ~~~~~~~~~~~f~~~~~~~-------------~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~   74 (276)
                      +..+|...++++++.+...             .|++..+...|.+.+    ++++...+..+.+.+.   .+  ....++
T Consensus        31 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~---~~--~~~l~~  105 (282)
T TIGR01475        31 GLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFL---SA--SYFLNP  105 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH---HH--HHHHhH
Confidence            4567888888888887761             222212223344333    4666666655443333   22  223356


Q ss_pred             HHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhcCccccccccch--HHHHHHHHHHHHHHHH
Q 023874           75 RAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT--ATVLSASLLVGLTTSL  151 (276)
Q Consensus        75 ~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~--~~~ll~slp~~l~~~~  151 (276)
                      ....++..+.+..+.|+.    +||+ ++|++..++.+|. ++.+++.+++++       .+  ...++.+++..+++.+
T Consensus       106 ~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~g~-------~~~~~~~~ll~~~~~~w~~~  173 (282)
T TIGR01475       106 LAFILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGL-APLAGWVAVIGT-------ISFFLVAWLLGIGVGFWIAG  173 (282)
T ss_pred             HHHHHHHHHHHHHHHHhh----HhccccccHHHHHHHHHH-HHHHHHHHHhCC-------ccchHHHHHHHHHHHHHHHH
Confidence            566677777778889973    6755 5899999999885 556667777776       45  6777889999999999


Q ss_pred             HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023874          152 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH  231 (276)
Q Consensus       152 ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~  231 (276)
                      ..+.||++|+|+|+++|++|+|+++|+|++++.+.....+++.+.......+...+..+....+..+......+.. +. 
T Consensus       174 ~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~~-~~-  251 (282)
T TIGR01475       174 FDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIV-DP-  251 (282)
T ss_pred             HHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHc-CC-
Confidence            9999999999999999999999999999999999887777776665554443322222221123333333444433 22 


Q ss_pred             cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          232 KDKGKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       232 ~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                      +++++   +++.--..+...++++.+|++++.+
T Consensus       252 ~~~~~---~~~~ff~~~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       252 GDQSK---IQRAFFYANGFLSITFLIGVIIDVL  281 (282)
T ss_pred             CCHHH---HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            22221   2222344455566777777776543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.76  E-value=2.3e-16  Score=146.76  Aligned_cols=198  Identities=15%  Similarity=0.009  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +|++...+..+.++|. +|+.+  ...+++..+.+|+.+.++++.|+.+|.. .+.|.+++.-++.++. +..++ ++++
T Consensus        96 ~~~a~~~~i~l~~i~~~l~~~l--~~~~~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~-~~~~g-~~~~  170 (297)
T PRK12871         96 SKNAFALFILLAAVTSALILTL--PYPNSLYVFVIMLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTL-FPAAG-YLCY  170 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHHH-HHHHH-HHHh
Confidence            6888888888888887 46665  4456778889999999999999988854 5667777544455555 33333 4566


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      ++       +++..++.+++.++++.+...+||++|+|+|+++|++|+|+++|++++++.......++.+..+.. ..+.
T Consensus       171 g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~-~~~~  242 (297)
T PRK12871        171 GQ-------PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFF-LREL  242 (297)
T ss_pred             CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            65       677888889999999999999999999999999999999999999999987776665555433322 2233


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      -+.......+...|+.....+..+.+  ++++-+    +.-+....+...++..+++.
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~f~~~~~~~~~~~~~~~~~  294 (297)
T PRK12871        243 GPIALYGFLAGFVLLAGANLYLWKEK--SQDAGM----KILPLYHASLVIYAVSIILD  294 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence            22211111134455655555555332  233222    35566666666666666554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.74  E-value=3.4e-16  Score=144.78  Aligned_cols=232  Identities=15%  Similarity=0.065  Sum_probs=145.7

Q ss_pred             hcccCchhhHHhhhhhhhcc---------cCCcceeee-----ecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023874           11 YSKVCPRATFLLFCPSVLYS---------KESHWLVIS-----FVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAG   72 (276)
Q Consensus        11 ~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~~-----~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~   72 (276)
                      .++.+|...++++++++.-.         -|.+ .+.+     .|.+.+    ++++...+..+++.++   .+  ....
T Consensus        33 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~-iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l---~l--~~~l  106 (284)
T PRK12888         33 DGSVHWADLLLVTVAMVGARTFAMAANRIIDRE-IDARNPRTAGRELVTGAVSVRTAWTGALVALAVFL---GA--AALL  106 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HH--HHHH
Confidence            35667888888888776651         1111 1112     222222    4566655554443333   22  2334


Q ss_pred             hHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHH
Q 023874           73 NLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLI  152 (276)
Q Consensus        73 g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~i  152 (276)
                      ++....++.++++..+.|+   +.-++++++++..+++++. .+++++++++++       ++++.++.+++.++++...
T Consensus       107 ~~~~~~l~~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~  175 (284)
T PRK12888        107 NPLCLALAPLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTGT-------WSWPAVLLGLAVGLWIGGF  175 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHH
Confidence            5655666667777777885   2334567899999988764 556778998887       7888889999999999999


Q ss_pred             HHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 023874          153 LFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHK  232 (276)
Q Consensus       153 ll~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~  232 (276)
                      .+.|+++|+|+|+++|+||+|+++|+|++.+++.......+++.........+.+..+....++........+.. + .+
T Consensus       176 ~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~-~-~~  253 (284)
T PRK12888        176 DLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAIV-S-PT  253 (284)
T ss_pred             HHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHc-C-cc
Confidence            999999999999999999999999999999888777666666555544433332222222123333333332222 2 12


Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          233 DKGKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       233 ~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                      ++++..   +.--+.+...|+++.+|++++.+
T Consensus       254 ~~~~~~---~~ff~~n~~ig~~~~~~~~~~~~  282 (284)
T PRK12888        254 DLSRVN---RAFFTANGFVGIALFGFALLDLL  282 (284)
T ss_pred             CHHHHH---HHHHHHhhHHHHHHHHHHHHHHH
Confidence            333322   11233445567888888887654

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.74  E-value=4.8e-16  Score=142.98  Aligned_cols=197  Identities=13%  Similarity=0.086  Sum_probs=130.4

Q ss_pred             ccCchhhHHhhhhhhhc-----------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHH
Q 023874           13 KVCPRATFLLFCPSVLY-----------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRA   76 (276)
Q Consensus        13 ~~~~~~~~~~f~~~~~~-----------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~   76 (276)
                      +.++...++.+++.+..           |.|.+.-...+|.+.+    ++++...+..+.++|+. +..      .++..
T Consensus        33 ~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~------l~~~~  106 (279)
T PRK09573         33 KIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIF------INIYA  106 (279)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHH------HhHHH
Confidence            44677777777776554           2222211112333332    57787788777777763 332      36677


Q ss_pred             HHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023874           77 IMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC  155 (276)
Q Consensus        77 l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~  155 (276)
                      ..++.++.+..+.||.   ++||++ +||+.++..+|..++.|.+++++..          ..++..+...+++.+....
T Consensus       107 ~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~----------~~~~l~~~~f~~~~~~~~~  173 (279)
T PRK09573        107 FLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVL----------RIIILFLCAFFSTWSREIV  173 (279)
T ss_pred             HHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHHHHHH
Confidence            8888889989999985   578877 4999999999999888877766421          2233444555777788889


Q ss_pred             cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHhHHHHHHHHHHHHH
Q 023874          156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI-FLCAMTSPIGKLVVSYVE  228 (276)
Q Consensus       156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~l-l~~ll~lPla~~~~~~~~  228 (276)
                      ||++|+|+|+++|++|+|+++|+|++.++.........+........+...+..+ ....+..+......+..+
T Consensus       174 ~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~  247 (279)
T PRK09573        174 KDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLK  247 (279)
T ss_pred             hhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence            9999999999999999999999999999887666555554444433343233221 111334555555555443

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.74  E-value=1.1e-15  Score=140.81  Aligned_cols=134  Identities=16%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhchHH-HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023874           46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLR-AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~-~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~  123 (276)
                      ++++...++.++++|.. +..+     .++. ....+...++.++.||.   ++||++.++..++...|.+++.++++++
T Consensus        82 ~~~a~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~  153 (279)
T PRK12869         82 RKEALAVGSALSALGTALGFLL-----LGPLTALFIALGWFFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASG  153 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            57777777777777763 4431     2332 22334445567889994   7999999999999999999999999999


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHH
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS  194 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl  194 (276)
                      +++       ++++.++.+++..+++.+..++|+++|+|+|+++|+||+|++.|+|++++.......+...
T Consensus       154 ~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  217 (279)
T PRK12869        154 TGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP  217 (279)
T ss_pred             hCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence            987       7888899999999999999999999999999999999999999999999887665544433

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.73  E-value=1.4e-15  Score=139.69  Aligned_cols=126  Identities=17%  Similarity=0.185  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++++...+..+.++|+   .+  ....|+....++..+.+.++.||.   ++|+++ +||+.++..+|..++.|.+.+  
T Consensus        81 ~~~a~~~~~~l~~~g~---~l--~~~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~a~--  150 (277)
T PRK12883         81 RKAALYYSLLLFAVGL---AL--AYLINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAIAV--  150 (277)
T ss_pred             HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHHHh--
Confidence            4666666666655443   33  234688888888889999999996   456655 699999999998887666443  


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHH
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAV  189 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~  189 (276)
                      ++       +++..+... ...++..+..+.||+||+|+|+++|++|+|+++|+|++++......
T Consensus       151 ~~-------~~~~~~~~~-~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        151 GR-------IGLAGYLAI-CAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             cc-------ccHHHHHHH-HHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            43       455544433 3456667788999999999999999999999999999999876543

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.72  E-value=2.5e-15  Score=138.29  Aligned_cols=166  Identities=14%  Similarity=0.031  Sum_probs=120.5

Q ss_pred             cCchhhHHhhhhhhhc-----------c--cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 023874           14 VCPRATFLLFCPSVLY-----------S--KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRA   76 (276)
Q Consensus        14 ~~~~~~~~~f~~~~~~-----------~--~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~   76 (276)
                      .+|...++++++.+..           |  .|++-.+...|.+.+    +|++...+..++++|+.   + +....++..
T Consensus        32 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~---i-l~~~~~~~~  107 (280)
T TIGR01473        32 VNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVA---I-LAAFVNPLA  107 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH---H-HHHHHhHHH
Confidence            5777777777777665           1  121101112233322    56777777777666553   1 123356777


Q ss_pred             HHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023874           77 IMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC  155 (276)
Q Consensus        77 l~~g~i~~l~-~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~  155 (276)
                      ..++.++++. ++.||.   ++||+++++..++..+|.++++++|++++++       +++..++++++..+++..-...
T Consensus       108 ~~l~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~  177 (280)
T TIGR01473       108 ALLGLFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS-------ISLGAWLLFAIIFLWQPPHFWA  177 (280)
T ss_pred             HHHHHHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHH
Confidence            7788888765 899995   6899999999998899999999999999887       7788888888888888776666


Q ss_pred             cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHH
Q 023874          156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY  193 (276)
Q Consensus       156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ay  193 (276)
                      ...+|+|+||++|+||+|+++|+|++.+..........
T Consensus       178 ~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~  215 (280)
T TIGR01473       178 LALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALL  215 (280)
T ss_pred             HHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999998876554443333

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.68  E-value=5.3e-15  Score=138.63  Aligned_cols=193  Identities=15%  Similarity=0.040  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++++...+..+   .++|+.+  ....|+....+++.+++.++.||.    .|| ++++....++.++..+.. +|++++
T Consensus       118 ~~~a~~~~~~~---~~~g~~l--~~~~~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~-g~~a~~  187 (314)
T PRK12878        118 RKQAKVFMVLQ---ALVGLAV--LLQFNWFAIALGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALM-GWAAHF  187 (314)
T ss_pred             HHHHHHHHHHH---HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHH-HHHHHh
Confidence            35554444333   3345554  234588889999999999999974    554 455666556666544444 489998


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      ++       +++..+++.+...+++..--.+++++|+|+|+++|++|+|+++|++++++.+........++.+.....+ 
T Consensus       188 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~-  259 (314)
T PRK12878        188 GS-------LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG-  259 (314)
T ss_pred             CC-------CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            87       6777777777778888888888999999999999999999999999999999766665554444444444 


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhh-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          205 LPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  263 (276)
Q Consensus       205 lP~~~ll~~ll~lPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~  263 (276)
                      .+++.++ +.+..+.. ...+ ..+. .+++++   + ++.-+.+..++.++.++++++.
T Consensus       260 ~~~~~~~-~~~~~~~~-l~~~-~~~~~~~~~~~---~-~~~F~~n~~~~~ll~~~l~~~~  312 (314)
T PRK12878        260 VPLLALL-GLLAAAAH-LAWQ-IARLDIDDPDQ---C-LRLFKSNRDAGLLIFLGLVVGG  312 (314)
T ss_pred             CcHHHHH-HHHHHHHH-HHHH-HHHcccCChHH---H-HHHHHHhHHHHHHHHHHHHHHh
Confidence            3555443 24445543 2222 2221 122221   2 3456677778888888877754

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.68  E-value=7.9e-15  Score=135.31  Aligned_cols=194  Identities=16%  Similarity=0.104  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~  125 (276)
                      ++++...+..++++++.   +  ....++....++..+.+..+.|+   +.-+++++|++..++.+|.. +..+|.++++
T Consensus        88 ~~~a~~~~~~l~~~~~~---l--~~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~-~~~g~~a~~~  158 (282)
T PRK12848         88 EKEALALFVVLVLVAFL---L--VLTLNTLTIWLSVAALALAWIYP---FMKRYTHLPQVVLGAAFGWG-IPMAFAAVQG  158 (282)
T ss_pred             HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHH-HHHHHHHHhC
Confidence            57777777777777653   2  12336667778888888899994   45567789999989998864 4567888888


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023874          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL  205 (276)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~l  205 (276)
                      +       +++..++++++..+++....+.|+++|+|+|+++|++|+|+++|+|++.+...........+.......+..
T Consensus       159 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (282)
T PRK12848        159 S-------VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLG  231 (282)
T ss_pred             C-------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            7       677888899999999999999999999999999999999999999998877644433333333333333443


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          206 PLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       206 P~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      +++. ..............+.. +. +++++   ++ +.-+.+...|.++.+|++++
T Consensus       232 ~~y~-~~~~~~~~~~~~~~~~~-~~-~~~~~---~~-~~F~~n~~~g~~l~~~~~~~  281 (282)
T PRK12848        232 WAYY-WGLLVAAALFVYQQKLI-RD-REREA---CF-KAFLNNNWVGLVLFAGIAAS  281 (282)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHc-CC-CCHHH---HH-HHHHhCcHHHHHHHHHHHHh
Confidence            3332 21122222222233222 11 22222   21 23344555777777776653

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.66  E-value=1.3e-14  Score=134.57  Aligned_cols=198  Identities=13%  Similarity=-0.027  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~  125 (276)
                      +++....+..++++++.   +  ...-++....++..+.+..+.||.   .-++++++++..++.+|. .+.++|+++++
T Consensus        92 ~~~a~~~~~~~~~~~~~---l--~~~l~~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g  162 (290)
T PRK12870         92 VKVGIVIAIVALLCAAG---L--AFFLNPLSFWLCVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTG  162 (290)
T ss_pred             HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcC
Confidence            45666666655555552   2  122355566677788888899973   445667889988999884 67888888888


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023874          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL  205 (276)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~l  205 (276)
                      +       +++..++++++..+++...-..++++|+|+|+++|.+|+|+++|++++.++.........++.......|..
T Consensus       163 ~-------~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~  235 (290)
T PRK12870        163 H-------LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELH  235 (290)
T ss_pred             C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            7       677788889999999999999999999999999999999999999999877664333333333333334444


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          206 PLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       206 P~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                      +++. ....+...........++++  ++++..  .+..-+.+...|.++.++++++.+
T Consensus       236 ~~y~-~~~~~~~~~l~~~~~~~~~~--~~~~~~--~~~~F~~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        236 LPFW-IGLAIAAVLWARQYRRLRQA--NLPPLA--YGQLFLQNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHhccc--CCChHH--HHHHHHHhhHHHHHHHHHHHHHhh
Confidence            4433 21122222222333333222  122211  123566777788888888877654

>PLN02878 homogentisate phytyltransferase

Probab=99.66  E-value=2e-14  Score=132.03  Aligned_cols=150  Identities=19%  Similarity=0.237  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeecc--CCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        47 ~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~--~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++.+.....++++|+   .+. ...+.++++.....++++++.||.  ||+|+|+.++-...++++-+...+-.++|...
T Consensus        68 ~~a~~~~~~~~~lg~---~la-~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~  143 (280)
T PLN02878         68 ATGVAIVTSFAIMSF---GMG-WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHM  143 (280)
T ss_pred             HHHHHHHHHHHHHHH---HHH-HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence            555555555544444   331 123334566666778789999997  99999999986666666655454433444331


Q ss_pred             Cc--cccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023874          125 ST--RENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  201 (276)
Q Consensus       125 ~~--~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~  201 (276)
                      ++  ... ...++...+...+-..+...++.+.||+||+|+||+.|++|+|+++|+|++.++...+..++|+..++...
T Consensus       144 ~~~~~g~-~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~  221 (280)
T PLN02878        144 QTHVLGR-PAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA  221 (280)
T ss_pred             HHHHhCC-ccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  110 11134455555556778888999999999999999999999999999999999999999999986554433

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.66  E-value=2.6e-14  Score=132.67  Aligned_cols=126  Identities=18%  Similarity=0.180  Sum_probs=100.3

Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023874           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT  149 (276)
Q Consensus        70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~  149 (276)
                      ...++....++.++.+....||.   .-+++++|++..+++++ .+++++|++++++       +++..++++++..+++
T Consensus       107 ~~~~~~~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~  175 (291)
T PRK12886        107 WFLNPLCLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWV  175 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHH
Confidence            45677777777777777888984   22346789999988866 4567889999887       7788888999999999


Q ss_pred             HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023874          150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP  206 (276)
Q Consensus       150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP  206 (276)
                      ...-+.++++|+|+|+++|++|+|+++|++++++.........+.+.......+..+
T Consensus       176 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (291)
T PRK12886        176 AGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLG  232 (291)
T ss_pred             HHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            988788899999999999999999999999999988777777776655555544433

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.66  E-value=2.2e-14  Score=132.83  Aligned_cols=191  Identities=15%  Similarity=0.033  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++.+.....+.+.++ +|+++  ....++....+..++.+++++||.||+|+|+||+.|-.+-..+|.-  .+...+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~l--a~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p--~~~~~~~~  166 (292)
T PRK13595         91 PGEVRPLLRAVLLLNAPFLLYL--ALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALP--LALPALAL  166 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHH--HHHHHHHc
Confidence            5677777777777776 47776  4566787788888889999999999999999999887776666652  23333344


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      +..      ..+..+   +...++..+.-...++.|+|+||+.|.||+|+++|+|++.++.....+++-+....      
T Consensus       167 g~~------~~~~~l---~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~------  231 (292)
T PRK13595        167 GAP------VPWPPL---LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP------  231 (292)
T ss_pred             CCc------chHHHH---HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH------
Confidence            431      233322   23346667777888999999999999999999999999999987766665443322      


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 023874          205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGL  259 (276)
Q Consensus       205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl  259 (276)
                      .++...+  .+.+|.+....+ +.+. +++++....-+...-.+.+.|.+.+.-+
T Consensus       232 ~~~~~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~  282 (292)
T PRK13595        232 VSRLTAL--ALWLICGGMALA-LWRR-PTPETAHRLYPLSIVTPWIVGTVAGVLL  282 (292)
T ss_pred             hcchHHH--HHHHHHHHHHHH-HhcC-CCHHHHhccchHHHHHhHHHHHHHHHHH
Confidence            2222212  244555555554 3332 2334333232334445556665544433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.66  E-value=1.7e-14  Score=133.08  Aligned_cols=193  Identities=15%  Similarity=0.079  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccc-cccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLS-YQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~-y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++++...+..+.++|+   .+  .+..++....++.++++.++.||.    .| +++++++..++.++..++.| |++++
T Consensus        86 ~~~a~~~~~~~~~~~~---~l--~~~l~~~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~  155 (281)
T TIGR01474        86 VRQAILFLLVQLLVAL---GV--LLQLNPLTILLGVASLALVATYPF----MKRITYWPQLVLGLAFGWGALMG-WAAVT  155 (281)
T ss_pred             HHHHHHHHHHHHHHHH---HH--HHHhhHHHHHHHHHHHHHHHHhch----hcccccccHHHHHHHHHHHHHHH-HHHHc
Confidence            3556555555444444   33  234578888899999999999973    44 45789999998888655554 77787


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      ++       +++..++..+...+++.....+|+++|+|+|+++|+||+|+++|+|+++...........+........+.
T Consensus       156 g~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (281)
T TIGR01474       156 GD-------LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGL  228 (281)
T ss_pred             CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            76       67777777888889999999999999999999999999999999999876655544444444433333333


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023874          205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  262 (276)
Q Consensus       205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~  262 (276)
                      .+++.... .+..-......... ++ +++++   + ++.-|.+..++.++.+++.++
T Consensus       229 ~~~y~~~~-~~~~~~~~~~~~~~-~~-~~~~~---~-~~~F~~~~~~~~~l~~~~~~~  279 (281)
T TIGR01474       229 GPVYYLGL-AAAALLLIRQIATL-DI-RDPEN---C-LKLFKANNYVGLLLFAGIALG  279 (281)
T ss_pred             cHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH---H-HHHHHHhhHHHHHHHHHHHHH
Confidence            33332221 22222222233333 22 22221   2 235566667777777776654

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.65  E-value=1.9e-14  Score=132.10  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++++..+..+.++|++   +  .+..++....++..+.+.++.||.   ++|+++ +||+.++...|.....|..+...
T Consensus        82 ~~~a~~~~~~l~~~g~~---~--~~~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~  153 (276)
T PRK12882         82 PRGALAFSILLFAAGVA---L--AFLLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT  153 (276)
T ss_pred             HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            57777777777777663   2  122367777888888888999985   889876 59999988888766666544332


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHH
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF  197 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~  197 (276)
                      .        .....+..++...+++......||++|+|+|+++|++|+|+++|+|++.++.........+...
T Consensus       154 ~--------~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~  218 (276)
T PRK12882        154 E--------GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP  218 (276)
T ss_pred             c--------chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            1        2334456677777888888999999999999999999999999999999987666655544433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=1.4e-13  Score=127.70  Aligned_cols=229  Identities=11%  Similarity=-0.039  Sum_probs=135.1

Q ss_pred             ccCchhhHHhhhhhhhc-----------cc--CCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 023874           13 KVCPRATFLLFCPSVLY-----------SK--ESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLR   75 (276)
Q Consensus        13 ~~~~~~~~~~f~~~~~~-----------~~--~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~   75 (276)
                      ..+|...++++++.+..           |.  |++-.+...|.+.+    ++++...+..+.+++++..+     ..++.
T Consensus        43 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-----~~n~~  117 (291)
T PRK12874         43 WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-----FINPL  117 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-----HHhHH
Confidence            46777777777777655           11  11111112222222    56777666666554443222     22443


Q ss_pred             HHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023874           76 AIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF  154 (276)
Q Consensus        76 ~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill  154 (276)
                      -..+++.++.....||.    .|| +++|++..++++|..++.| +...+|+       +++..++.+++..+++....+
T Consensus       118 ~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G-~~av~g~-------~~~~~~~l~~~~~~w~~~~~~  185 (291)
T PRK12874        118 AFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAG-VVAVLGE-------IPLWSVFLALGVMFWVAGFDL  185 (291)
T ss_pred             HHHHHHHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHH
Confidence            34444455556778883    454 5789999999988665555 4444666       667777888999999999999


Q ss_pred             hcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCc
Q 023874          155 CSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDK  234 (276)
Q Consensus       155 ~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~  234 (276)
                      .|+++|+|+|+++|++|+|+++|++++.+........+.+............++..+...+.........+..+ + +++
T Consensus       186 ~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~  263 (291)
T PRK12874        186 LYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVR-K-DFK  263 (291)
T ss_pred             HHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-C-CCh
Confidence            99999999999999999999999999998765555544444333222222222222221233333334433332 1 222


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023874          235 GKIFMAKYYCVRFHALFGAALVAGLITARI  264 (276)
Q Consensus       235 ~~~~~~~~~t~k~~~l~~~ll~igl~l~~~  264 (276)
                       +.   ++..-..+...++++.++++++.+
T Consensus       264 -~~---~~~ff~sn~~l~~l~~~~~~~~~~  289 (291)
T PRK12874        264 -KI---DKAFFTLNGYLGIVFFIFIVLDVL  289 (291)
T ss_pred             -HH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence             11   112234445566777777776654

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.61  E-value=2.7e-13  Score=125.99  Aligned_cols=130  Identities=15%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023874           46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~  123 (276)
                      ++++...+..+.++|+. +..+     .++.-..++.++++ ..+.||.   ++||++.|+..++...|..+++++++++
T Consensus        90 ~~~a~~~~~~l~~~g~~l~~~l-----~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~  161 (296)
T PRK04375         90 PREALIFGLVLGVLGFLLLGLF-----VNPLAAWLTLAGIFFYVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAV  161 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHh
Confidence            57777777777766663 3322     12222223333322 3557874   7999999999998788888889999999


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHH
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVM  190 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  190 (276)
                      +++       +++..++++++..+++..-.++++++|+|+|+++|.+|+|+++|++++++.......
T Consensus       162 ~g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~  221 (296)
T PRK04375        162 TGS-------LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTV  221 (296)
T ss_pred             CCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHH
Confidence            887       778888889999999988899999999999999999999999999998875544333

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.43  E-value=2.2e-11  Score=113.58  Aligned_cols=181  Identities=14%  Similarity=0.038  Sum_probs=102.9

Q ss_pred             chHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhcCccccc-cccchHHHHHHHHHHHHHH
Q 023874           72 GNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENL-CLSITATVLSASLLVGLTT  149 (276)
Q Consensus        72 ~g~~~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~-~~~~~~~~ll~slp~~l~~  149 (276)
                      .++....++..+.+..+.|+.    .|| +.+|++..++.+|..+..| +.+.++..... ...++...++..+...+++
T Consensus       116 ln~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~  190 (300)
T PRK13106        116 VNRWALLLSPIVALIAMSYPY----MKRYTAFANYHLASIQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWA  190 (300)
T ss_pred             HhHHHHHHHHHHHHHHHHHhH----HhcCCcchHHHHHHHHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHH
Confidence            355444555555666777862    454 5689999999999765554 45555541100 0001122222333334555


Q ss_pred             HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023874          150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE  229 (276)
Q Consensus       150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~  229 (276)
                      ..--..|+++|+|+|+++|.||+|+++| |++++....+...+..+.........+.+..+.....+.-......+...+
T Consensus       191 ~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~~~~  269 (300)
T PRK13106        191 AGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYLASK  269 (300)
T ss_pred             HHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5555679999999999999999999999 889888777766666555554443322222112111211222222222211


Q ss_pred             hccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023874          230 NHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV  266 (276)
Q Consensus       230 ~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~  266 (276)
                         + ++   +. ..-+.+...|+++.+|++++.+++
T Consensus       270 ---~-~~---~~-~~F~~n~~ig~~~~~~~~~~~~~~  298 (300)
T PRK13106        270 ---K-GD---FG-RAFYYNIYSSIVLGLGIIIDVLLG  298 (300)
T ss_pred             ---c-hH---HH-HHHHHccHHHHHHHHHHHHHHHHc
Confidence               1 22   21 233666678888888888877653

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.32  E-value=7.5e-10  Score=103.61  Aligned_cols=125  Identities=15%  Similarity=0.060  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023874           46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~  123 (276)
                      +++....+..+.++|.. +..     ..++....++.++.+ ..+.||.   ++||++..+..++-..|.++++++++++
T Consensus        93 ~~~A~~~~~~l~~~g~~ll~~-----~~n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~ga~p~l~G~~a~  164 (306)
T PRK13362         93 LGEALGFGLALGVAGFGLLAA-----FTNPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLSGAMPPVVGYCAV  164 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHHHHHHHHHHHHHH
Confidence            56777777777666663 332     224433333334332 4668983   7999999777776666788899999999


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHH
Q 023874          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVV  185 (276)
Q Consensus       124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~  185 (276)
                      +++       +++..+++.....+++..--++-.+.|+|+|+++|.+|+|++.|+|++++..
T Consensus       165 ~g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        165 TGQ-------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             cCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            987       6778888888888888887777788899999999999999999999988743

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.30  E-value=3.7e-10  Score=104.87  Aligned_cols=194  Identities=12%  Similarity=0.012  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++++...+..++++++   .+  ....+.....++..+.+..+.||.    .||+ .++++..++.++.. +..+|.+.+
T Consensus        91 ~~~A~~~~~~~~~~~~---~~--~~~l~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~-~l~g~~av~  160 (289)
T PLN02809         91 PFQGVGFLGAQLLLGL---GI--LLQLNNYSRILGASSLLLVFTYPL----MKRFTFWPQAFLGLTFNWG-ALLGWAAVK  160 (289)
T ss_pred             HHHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHHhH----HHhcCcchHHHHHHHHHHH-HHHHHHHHh
Confidence            3555544444444333   33  122355667778888888999973    6665 57999888887744 455566777


Q ss_pred             CccccccccchHHHHH-HHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh-
Q 023874          125 STRENLCLSITATVLS-ASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-  202 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll-~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~-  202 (276)
                      ++       .++...+ +.....+++..--..-.+.|+|+|+++|.+|+|+++|++.+.++. .+...++......... 
T Consensus       161 g~-------~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~  232 (289)
T PLN02809        161 GS-------LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNA  232 (289)
T ss_pred             CC-------CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            76       4444332 333344445332233344699999999999999999999665554 4555556555443332 


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHhh-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023874          203 RALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  265 (276)
Q Consensus       203 g~lP~~~ll~~ll~lPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~  265 (276)
                      +..++.. +.  ....... ...+.+.. .+++++   +. +.-+.+...|.++.+|++++..+
T Consensus       233 ~~~~~~~-~~--~~~~~~~-l~~~~~~v~~~~~~~---~~-~~F~~n~~~g~~~~~~~~~~~~~  288 (289)
T PLN02809        233 GLGWPYY-AG--LAAAAGH-LAWQIQTVDLSSRAD---CN-RKFVSNKWFGAIVFAGIVLGKLF  288 (289)
T ss_pred             cCcHHHH-HH--HHHHHHH-HHHHHHHcCCCCHHH---HH-HHHHhCCHHHHHHHHHHHHHHhh
Confidence            3222221 11  1111111 12222111 122232   22 23555556788888888876654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.29  E-value=4.7e-10  Score=103.77  Aligned_cols=144  Identities=24%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++.+.....+++++..   +  .+.-++....++..+.+.++.|   | .+||.+ ++....+..+|.....|. .+..
T Consensus        93 ~~~a~~~~~~~~~~~~~---~--a~~l~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~-~a~~  162 (289)
T COG0382          93 VKEALLLAILLLLLGLA---L--ALLLNPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGA-AAVG  162 (289)
T ss_pred             HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHH-HHHh
Confidence            35555555555555543   2  2333555577778888899999   4 677765 689999999986665554 4444


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      ++       .+...+++.+-..+++.+.-..++++|+|+||+.|.+|+|+.+|++++..+.......+-+...+....+.
T Consensus       163 ~~-------~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  235 (289)
T COG0382         163 GS-------LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL  235 (289)
T ss_pred             Cc-------cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43       45667778888889999999999999999999999999999999999999887777444333333333344


Q ss_pred             hh
Q 023874          205 LP  206 (276)
Q Consensus       205 lP  206 (276)
                      .+
T Consensus       236 ~~  237 (289)
T COG0382         236 LG  237 (289)
T ss_pred             ch
Confidence            43

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.22  E-value=2.3e-09  Score=100.05  Aligned_cols=116  Identities=12%  Similarity=0.015  Sum_probs=79.1

Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcCccccccccchH----HHHHHHHH
Q 023874           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA----TVLSASLL  144 (276)
Q Consensus        70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~----~~ll~slp  144 (276)
                      ...++.-..++.++++..+.||    ..||+.. +.+.-++.++. .+.+++.+.+++      +.++    ..++.+++
T Consensus       112 ~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~~~------~~~~~l~~~~~lw~~~  180 (300)
T PRK12876        112 WLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAIIET------PLSFSLFCMASLWGIS  180 (300)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHhcC------cccHHHHHHHHHHHHH
Confidence            4457777777888888889996    3888765 77777777775 455565655443      0333    23344455


Q ss_pred             HHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHH
Q 023874          145 VGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL  196 (276)
Q Consensus       145 ~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~  196 (276)
                      ..++++.-=....+.|+|+||+.|.||+|+++|++++.+.-.....++.+..
T Consensus       181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l  232 (300)
T PRK12876        181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAY  232 (300)
T ss_pred             HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHH
Confidence            5555554445556999999999999999999999998666555554444433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.20  E-value=2.4e-09  Score=99.36  Aligned_cols=200  Identities=10%  Similarity=-0.005  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++.......+++++..   +  ....++.-+.++..+......|.    ..||.. ++.+..++.+| ..+++++.+.+
T Consensus        83 ~~~A~~~~~~~~~~~~~---~--~~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~  152 (286)
T PRK12895         83 MREAIAFTIIFIAIFEI---C--TFLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIG-LGVLAGYLAVI  152 (286)
T ss_pred             HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHH-hHHHHHHHHHc
Confidence            45665555555554432   2  23345555556666655555553    467765 68888899999 57777777777


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      ++.+     .....+++.+...+++..-=....+.|+|+|++.|.||+|+++|++.+.++......++............
T Consensus       153 g~~~-----~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~  227 (286)
T PRK12895        153 PAFP-----YNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR  227 (286)
T ss_pred             CCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7621     22334456777788888877888999999999999999999999999987665555444444333333222


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023874          205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV  266 (276)
Q Consensus       205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~  266 (276)
                      .+++. +.  +.+....-.+++..-+.+++++..   ...-+.+-..|.++.+|.+++.+++
T Consensus       228 ~~~y~-~~--~~~~~~~l~~q~~~~~~~~~~~~~---~~~F~~N~~ig~~~~~~~~~~~~~~  283 (286)
T PRK12895        228 TLWYL-AA--LIIIYTLVIYQHLIIDPRNPINKR---MSFFNANSFIGFVFLIGIILSLRFP  283 (286)
T ss_pred             hHHHH-HH--HHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHcCHHHHHHHHHHHHHhccc
Confidence            22221 21  112222222222211112233221   1234455567788888888877654

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.97  E-value=1.2e-07  Score=88.46  Aligned_cols=140  Identities=15%  Similarity=0.080  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++....+..+..+++..++. +-...++.-..++.++++....||.    .||+ .+..+..++.++ .+++++|.+.+
T Consensus        90 ~~~A~~~~~~~~~~~~~~~~~-l~~~~n~l~~~l~~~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a-~~~l~gw~Av~  163 (294)
T PRK12873         90 LKTAYSLLIVLLLLSLFVVLS-LPQPSRNLCLSLAFLALPPILIYPS----AKRWFAYPQAILALCWG-FAVLIPWAAAE  163 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHH----HHhccccchHHHHHHHH-hHHHHHHHHHh
Confidence            355555555554444422211 0011355666777777777888983    4543 445666666655 55566777777


Q ss_pred             CccccccccchH--HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHH
Q 023874          125 STRENLCLSITA--TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI  199 (276)
Q Consensus       125 ~~~~~~~~~~~~--~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~  199 (276)
                      ++       +++  ..+.+.+...+++..-=..-.+.|+|+|+++|.+++|++.|++ +...-..+..++.++....
T Consensus       164 g~-------~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~  232 (294)
T PRK12873        164 GS-------LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALA  232 (294)
T ss_pred             CC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHH
Confidence            76       444  2333345666776655445566699999999999999999974 4444444444444433333

>PLN02776 prenyltransferase

Probab=98.71  E-value=5.6e-06  Score=78.67  Aligned_cols=132  Identities=9%  Similarity=0.025  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~-~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      ++++...+..+.++|+   .+ +....++.-..++..+++. ...||    .+||+.......+...|.++++++|.+.+
T Consensus        75 ~~~A~~~~~~l~~~g~---~~-l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avt  146 (341)
T PLN02776         75 VPHAVAWAVVVGAAGV---AL-LAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAAS  146 (341)
T ss_pred             HHHHHHHHHHHHHHHH---HH-HHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHc
Confidence            3555555555544444   22 1234566666676666555 56888    38999888888898999889999999998


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceee--chhhHHHHHHHHHHHH
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRL--GTERGSVVVKWAVMIL  192 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~l--G~~~a~~l~~~l~~~a  192 (276)
                      ++       +++..+++.+...+|+..=-+.=-+.|.|+|+++|.+.+|+.-  |++.++........+.
T Consensus       147 g~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~  209 (341)
T PLN02776        147 GQ-------LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLA  209 (341)
T ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHH
Confidence            87       7778788888888887632222234578899999999999865  5677766654444333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.44  E-value=2.5e-05  Score=72.82  Aligned_cols=103  Identities=6%  Similarity=0.000  Sum_probs=62.3

Q ss_pred             HHHHheee-----ccCCcccccccc-hHHHHHhhhhHHHHHH-HHH-----HhcCccccccccchHHHHHHHHHHHHHHH
Q 023874           83 AVICGYIY-----QCPPFRLSYQGL-GEPLCFAAFGPFATTA-FYL-----LLGSTRENLCLSITATVLSASLLVGLTTS  150 (276)
Q Consensus        83 ~~l~~~~Y-----S~~P~~l~y~gl-GE~~v~l~fG~l~~~g-~~~-----v~~~~~~~~~~~~~~~~ll~slp~~l~~~  150 (276)
                      ..++.+.|     +-   .+|+.|+ |.+.+...-|.....+ .+|     .......    ......+..++-..+...
T Consensus       117 ~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~l  189 (299)
T PRK13592        117 WFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPSL  189 (299)
T ss_pred             HHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHH
Confidence            34455566     54   7888876 8887766555322111 111     1111100    011111344444445555


Q ss_pred             HHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHH
Q 023874          151 LILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS  194 (276)
Q Consensus       151 ~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl  194 (276)
                      +--.+.+++| |+|++ |.+|+|+++|+|+|.++...+..++.+
T Consensus       190 ~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        190 IWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             HHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence            5678999999 87775 589999999999999988777666554

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0096  Score=55.77  Aligned_cols=170  Identities=14%  Similarity=0.044  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~  124 (276)
                      |++.+..+...-.+|.   .+ +....++..-.+++.+++ =...||.   -+|||---.+..+-.=|-.+++.+|.+.+
T Consensus        98 p~~al~fgl~L~~~g~---~~-l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvt  170 (304)
T COG0109          98 PREALAFGLVLGVAGF---SL-LWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVT  170 (304)
T ss_pred             HHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcccceeeeeccccccccceeeeee
Confidence            4666666655544444   33 224456654444444433 4678996   78998766666665568899999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  204 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~  204 (276)
                      |+       +++..+++...+.+|+--=-++=-++-.|+=+++|.--+|+.-|++.+++....-.++.....+.....|.
T Consensus       171 g~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~  243 (304)
T COG0109         171 GS-------ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGY  243 (304)
T ss_pred             CC-------CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            98       67777766666665554322333344566778999999999999999988654433333333233333444


Q ss_pred             h-hHHHHHHHHhHHHHHHHHHHHHHh
Q 023874          205 L-PLSCIFLCAMTSPIGKLVVSYVEE  229 (276)
Q Consensus       205 l-P~~~ll~~ll~lPla~~~~~~~~~  229 (276)
                      . +....+...+........++.+++
T Consensus       244 ~g~~Y~v~a~~l~~~~l~~a~~~~~~  269 (304)
T COG0109         244 VGYLYLVVATLLGAWFLALAWKLYRK  269 (304)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3 233333446666666666666654

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=96.54  E-value=0.23  Score=46.56  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchH-HHHHhhhhHHHHHHHHHHhc
Q 023874           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLG  124 (276)
Q Consensus        46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE-~~v~l~fG~l~~~g~~~v~~  124 (276)
                      +++....+..++++|+   .+  ....++....+....++..+.||.   ++|+++.-+ +.+..+++.-...|+.... 
T Consensus        92 ~~~A~~~~~~l~~~~l---~l--a~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~~-  162 (295)
T PRK12324         92 VSLAYILAVVLLVASL---AL--AYLLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAIG-  162 (295)
T ss_pred             HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHhC-
Confidence            3455555555544444   22  122355555555667778899995   899999754 4556666654445543322 


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccc
Q 023874          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPL  173 (276)
Q Consensus       125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~  173 (276)
                      ..       .+...+..+....+..+..-=.+|..+.++|.+.+|+++-
T Consensus       163 ~~-------~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~~~  204 (295)
T PRK12324        163 VP-------LSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKVLE  204 (295)
T ss_pred             CC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence            21       3333334444444555555556667666666666565543

>PRK08238 hypothetical protein; Validated

Probab=95.63  E-value=0.92  Score=45.31  Aligned_cols=104  Identities=14%  Similarity=0.084  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcC
Q 023874           47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGS  125 (276)
Q Consensus        47 ~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~  125 (276)
                      ++....+..++++|+   .+  .+..++....+.+..++....||.   ++|+++. +-+..++.|+.-+..|+. + .+
T Consensus       273 ~~A~~~~~~l~~~~~---~l--~~~l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a-~~  342 (479)
T PRK08238        273 PFGLAAAPLLLLAGL---AL--ALALGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-A-IG  342 (479)
T ss_pred             HHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-H-hc
Confidence            444444444444444   33  122355555665666777889995   8999986 555556777654445542 2 22


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023874          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK  169 (276)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk  169 (276)
                              .+...+++.... ++...+.+..-..|.+.|++.|+
T Consensus       343 --------~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        343 --------VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             --------cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence                    233444443322 44555667777888888888886

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=93.96  E-value=0.87  Score=41.69  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechh
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTE  179 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~  179 (276)
                      .++..+...+..++....||+-|+|.|+++ |++=|..-|+-
T Consensus        39 ~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~i   79 (279)
T PRK12884         39 ALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRI   79 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCC
Confidence            334444555666777889999999999999 77777777753

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=93.86  E-value=2.8  Score=38.67  Aligned_cols=43  Identities=21%  Similarity=0.054  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeech
Q 023874          136 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT  178 (276)
Q Consensus       136 ~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~  178 (276)
                      ....+..+...+..++.+..||+.|+|.||++-| +.=|.-=|+
T Consensus        47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            3555666677788888999999999999999987 333333343

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=92.59  E-value=1.9  Score=38.13  Aligned_cols=36  Identities=19%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhcCCCChHhhHhc-CCcccceeechhh
Q 023874          145 VGLTTSLILFCSHFHQVEGDRNV-GKMSPLVRLGTER  180 (276)
Q Consensus       145 ~~l~~~~ill~Nn~~D~e~D~~~-Gk~TL~v~lG~~~  180 (276)
                      ..+....+...||.-|.|+|+.+ +|..-|..-|+-+
T Consensus        32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            34666777889999999999996 3334444344444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=92.37  E-value=1.9  Score=40.44  Aligned_cols=43  Identities=14%  Similarity=0.002  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER  180 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~  180 (276)
                      .++..+-..+..++-+..||+-|+|-|+++.| ++=|..=|+-.
T Consensus        46 ~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is   89 (294)
T PRK12873         46 LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS   89 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence            34445556677788899999999999998877 46665555443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=92.28  E-value=1.9  Score=40.40  Aligned_cols=53  Identities=17%  Similarity=0.174  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHhhHhc-CCcccce---eechhhHHHHHHHHHHHH
Q 023874          140 SASLLVGLTTSLILFCSHFHQVEGDRNV-GKMSPLV---RLGTERGSVVVKWAVMIL  192 (276)
Q Consensus       140 l~slp~~l~~~~ill~Nn~~D~e~D~~~-Gk~TL~v---~lG~~~a~~l~~~l~~~a  192 (276)
                      +..+...+..++....||+.|+|.||++ .|+.=|.   ++.++.|..+...+..++
T Consensus        50 lafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         50 LAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            3334455666778899999999999997 3333333   345555554444444444

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=91.77  E-value=4.9  Score=36.96  Aligned_cols=49  Identities=2%  Similarity=-0.023  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccce-eechhhHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVK  186 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~v-~lG~~~a~~l~~  186 (276)
                      .++..+...+..++....||+-|+|.|+++.|   |.+|. ++.++.+.....
T Consensus        38 ~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~   90 (282)
T TIGR01475        38 LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII   90 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence            44555666688888899999999999998732   33333 445555554443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=91.69  E-value=1.8  Score=40.53  Aligned_cols=48  Identities=6%  Similarity=-0.092  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCCChHhhHhcCCccccee---echhhHHHHHHHHHHHHHH
Q 023874          146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVMILYS  194 (276)
Q Consensus       146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~ayl  194 (276)
                      .+...+.-..||.-|.|.|++++++ =|+.   +.++.+......+..++.+
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~~~  114 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEPY-RPIPSGAISEPEVITQIVLLFIAGIA  114 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHHHH
Confidence            4555666789999999999988753 3333   4455555444444444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=91.59  E-value=2.4  Score=39.66  Aligned_cols=192  Identities=16%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             HHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCcccccc
Q 023874           53 AYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLC  131 (276)
Q Consensus        53 ~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~  131 (276)
                      +++++..=. +|+.+  ..+-+|.-..+|..++...+.|+.-. |+.|.|-  ..-+++|+....+|- -+..|+..   
T Consensus       152 aI~fL~~ql~~gLgi--LlqLn~ysi~lg~~sl~~v~~ypl~k-r~TY~pq--~vLgltfnwGAllGw-~A~~g~~~---  222 (353)
T KOG1381|consen  152 AIGFLGAQLSLGLGI--LLQLNWYSIALGASSLALVITYPLMK-RFTYWPQ--LVLGLTFNWGALLGW-CALKGSLS---  222 (353)
T ss_pred             HHHHHHHHHHHhHHH--HHhccHHHHHhcccccccEEEeehhh-hcchhHH--HHHhhhcchhhhhcc-hhhcCccC---
Confidence            444444444 35554  34668888999999999999998632 4555542  334567766655553 23333310   


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH-hhh-hhHHH
Q 023874          132 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRA-LPLSC  209 (276)
Q Consensus       132 ~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~-~g~-lP~~~  209 (276)
                       +-....+.+|-..-.++---+.  -..|.+.|.+.|.++.+.|+|++.-.++-.+-. .....+....+ .|. .|...
T Consensus       223 -~s~~~plYls~v~Wtl~YDTIY--AHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a-~~ia~La~aG~~s~q~~pyy~  298 (353)
T KOG1381|consen  223 -PSAVLPLYLSGVCWTLIYDTIY--AHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGA-AQIASLAAAGIASDQTWPYYA  298 (353)
T ss_pred             -hhhhhHHHHhhhhhhhhhhhhh--hcccchhhhHhcchhhhhhcCCCCchHHhhhhH-HHHHHHHHhhhccCCCchHHH
Confidence             0011122223222222222222  357999999999999999999888776654422 22222222222 232 24443


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023874          210 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  265 (276)
Q Consensus       210 ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~  265 (276)
                      .+    . -.+.+...+..+. + -++..++- .-.+-+.-.|+.+..|+.++.++
T Consensus       299 ~l----g-~~~~~L~~~i~~v-d-iDnp~dC~-k~f~sN~ntGli~~~~i~~d~ll  346 (353)
T KOG1381|consen  299 AL----G-AVAARLGSQIYKV-D-IDNPSDCW-KKFKSNSNTGLILFSGIVLDTLL  346 (353)
T ss_pred             HH----H-HHHHHHHhheeee-e-cCChHHHH-HHHHhcCcchHHHHHHHHHHHHH
Confidence            21    1 1223444443332 1 11112121 12333445677777777776664

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=91.59  E-value=3.9  Score=37.41  Aligned_cols=53  Identities=15%  Similarity=-0.117  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeec---hhhHHHHHHHHHHHH
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL  192 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~a  192 (276)
                      ++..+...+..++....||+-|+|.|+.+. ++=|..=|   ++.+..+...+..++
T Consensus        41 ~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g   96 (276)
T PRK12882         41 GLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG   96 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            344445556677778899999999999754 44454444   455554444444444

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=91.17  E-value=7.2  Score=35.92  Aligned_cols=56  Identities=7%  Similarity=-0.102  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-eeechhhHHHHHHHHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILY  193 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~-v~lG~~~a~~l~~~l~~~ay  193 (276)
                      .++..+...+..++-...||+-|+|-|+++.|   |.+| =++.++.+......+..++.
T Consensus        38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~   97 (279)
T PRK12869         38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT   97 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence            34445555566777899999999999998664   3333 24455555444443433333

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=90.23  E-value=8.8  Score=35.80  Aligned_cols=54  Identities=7%  Similarity=-0.040  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-c---cceeechhhHHHHHHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-S---PLVRLGTERGSVVVKWAVMI  191 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-T---L~v~lG~~~a~~l~~~l~~~  191 (276)
                      .++..+...+..++-+..||+-|+|-|+++-|+ .   ..=++-++.|......+..+
T Consensus        39 l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~   96 (286)
T PRK12895         39 ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAI   96 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            334444555777778899999999999988433 2   22344455555444443333

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=90.12  E-value=9.2  Score=35.54  Aligned_cols=54  Identities=7%  Similarity=0.020  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-eeechhhHHHHHHHHHHHHH
Q 023874          140 SASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILY  193 (276)
Q Consensus       140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~-v~lG~~~a~~l~~~l~~~ay  193 (276)
                      +..+...+..++-...||+-|+|-|+++.|   |.+| =++.++.+..+...+..++.
T Consensus        48 l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~  105 (296)
T PRK04375         48 LTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGF  105 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            344444566777788999999999998643   3332 34455555555544444443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=90.06  E-value=5.8  Score=36.95  Aligned_cols=47  Identities=11%  Similarity=-0.131  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhhHHHHH
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGSVVV  185 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~a~~l~  185 (276)
                      ++..+...+..++-+..||+-|+|-|+++.| ++-|..=|+-..+...
T Consensus        48 ~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~   95 (289)
T PLN02809         48 ALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGV   95 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHH
Confidence            3444555577777889999999999998876 4667666764444443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.94  E-value=7.6  Score=35.79  Aligned_cols=42  Identities=12%  Similarity=0.006  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER  180 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~  180 (276)
                      ++..+...+..++-...||+-|+|-|+++.| ++=|..=|+-.
T Consensus        48 ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is   90 (285)
T PRK12847         48 VLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALS   90 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcC
Confidence            3444445567777789999999999997655 23444445433

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=89.86  E-value=13  Score=34.86  Aligned_cols=50  Identities=4%  Similarity=-0.142  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhcCCCChHhhHhcCC-cccce---eechhhHHHHHHHHHHHH
Q 023874          143 LLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVMIL  192 (276)
Q Consensus       143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v---~lG~~~a~~l~~~l~~~a  192 (276)
                      +...+..++-...||+-|+|-|++..| +.=|.   ++.++.+..+...+..++
T Consensus        54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g  107 (306)
T PRK13362         54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG  107 (306)
T ss_pred             HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            455566777889999999999997654 23333   344444544444344444

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.40  E-value=9.6  Score=35.14  Aligned_cols=41  Identities=12%  Similarity=-0.038  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023874          140 SASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER  180 (276)
Q Consensus       140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~  180 (276)
                      +..+...+..++-...||+-|+|-|+++.| ++=|.-=|+-.
T Consensus        44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is   85 (281)
T TIGR01474        44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVS   85 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcC
Confidence            334444566677789999999999997655 23343335433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=89.26  E-value=9.3  Score=35.05  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccce-eechhhHHHHHHHHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILY  193 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v-~lG~~~a~~l~~~l~~~ay  193 (276)
                      .++..+...+..++-...||+-|+|.|+++.+ |.+|. ++-++.+......+..++.
T Consensus        39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            34445555677777888999999999997642 33332 4555666655555554444

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=88.04  E-value=6.7  Score=35.91  Aligned_cols=45  Identities=9%  Similarity=-0.105  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCCChHhhHhcCCccccee---echhhHHHHHHHHHHH
Q 023874          146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVMI  191 (276)
Q Consensus       146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~  191 (276)
                      .+..++....||+-|+|.|+.++ ++=|..   +-++.+......+..+
T Consensus        47 ~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~   94 (277)
T PRK12883         47 YLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAV   94 (277)
T ss_pred             HHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHH
Confidence            34446678899999999999765 444444   4455555544444333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=87.98  E-value=6.8  Score=36.42  Aligned_cols=20  Identities=10%  Similarity=-0.024  Sum_probs=16.8

Q ss_pred             HHhcCCCChHhhHhcCCccc
Q 023874          153 LFCSHFHQVEGDRNVGKMSP  172 (276)
Q Consensus       153 ll~Nn~~D~e~D~~~Gk~TL  172 (276)
                      ...||+.|+|.||++.||..
T Consensus        62 y~iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875         62 YGVNDVFDADTDELNPKKDR   81 (282)
T ss_pred             hcchhhhhhhccccCCCccC
Confidence            35799999999999888763

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=87.97  E-value=22  Score=32.76  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHhhHhcCCc-ccceeec---hhhHHHHHHHHHHHH
Q 023874          143 LLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLG---TERGSVVVKWAVMIL  192 (276)
Q Consensus       143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~v~lG---~~~a~~l~~~l~~~a  192 (276)
                      +...+..++-...||+-|+|-|+++.|. +=|.-=|   ++.+...-..+..++
T Consensus        49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~  102 (282)
T PRK12848         49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA  102 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3334566777899999999999865542 2333334   444444433333333

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=87.70  E-value=15  Score=34.58  Aligned_cols=42  Identities=5%  Similarity=-0.049  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechh
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE  179 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~  179 (276)
                      .++..+...+.-++=+..||+-|+|-|+++-| ++=|.-=|+-
T Consensus        49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~i   91 (300)
T PRK12876         49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLL   91 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCC
Confidence            45667777778888889999999999999886 3444444653

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=87.02  E-value=22  Score=33.11  Aligned_cols=42  Identities=7%  Similarity=-0.079  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechh
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE  179 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~  179 (276)
                      ..+..+...+..++-...||+-|+|-|+++-| +.=|..=|+-
T Consensus        44 l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~i   86 (291)
T PRK12886         44 LDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI   86 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCc
Confidence            34445555566666778899999999998753 2234444533

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=86.73  E-value=4.3  Score=37.08  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK  169 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk  169 (276)
                      +...+...+..++....||.-|+|.|+.+.+
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            3444455677778888999999999998655

>PRK13592 ubiA prenyltransferase; Provisional

Probab=85.97  E-value=10  Score=35.78  Aligned_cols=59  Identities=12%  Similarity=0.064  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccc-eeechhhHHHHHHHHHHHHH
Q 023874          135 TATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPL-VRLGTERGSVVVKWAVMILY  193 (276)
Q Consensus       135 ~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~-v~lG~~~a~~l~~~l~~~ay  193 (276)
                      ..+.++..+-..+.++.-...||+.|+|.||.+.-. -+| =++-++.++.+-..+.+.+.
T Consensus        45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l  105 (299)
T PRK13592         45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSV  105 (299)
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            334455455555666778899999999999876432 222 24555666655544444433

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.68  E-value=9.7  Score=35.79  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=22.1

Q ss_pred             HHhcCCCChHhhHhcCCccccee---echhhHHHHHHH
Q 023874          153 LFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKW  187 (276)
Q Consensus       153 ll~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~  187 (276)
                      .-.||+-|+|.|+.+ |.+.|+.   +-++.++.+...
T Consensus        70 ~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~  106 (308)
T PRK12887         70 VGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII  106 (308)
T ss_pred             HHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence            339999999999965 5666653   444555444433

>PLN02776 prenyltransferase

Probab=85.65  E-value=17  Score=34.92  Aligned_cols=53  Identities=9%  Similarity=-0.009  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccce---eechhhHHHHHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVM  190 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v---~lG~~~a~~l~~~l~~  190 (276)
                      ..+..+...+..++-+..||+-|+|-|++..| +.=|.   ++.++.|..+-..+..
T Consensus        31 l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~   87 (341)
T PLN02776         31 LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGA   87 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            34455566677778889999999999988654 23333   4444444444333333

>PRK08238 hypothetical protein; Validated

Probab=85.48  E-value=14  Score=37.06  Aligned_cols=55  Identities=20%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccee---echhhHHHHHHHHHHHH
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLVR---LGTERGSVVVKWAVMIL  192 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~G-k~TL~v~---lG~~~a~~l~~~l~~~a  192 (276)
                      .++..+..++..++....||+-|+|.||++- |+.=|..   +.++.|..+...+..++
T Consensus       228 ~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~  286 (479)
T PRK08238        228 ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG  286 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3455556678888899999999999999984 3444543   44455554444444444

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.41  E-value=31  Score=31.97  Aligned_cols=32  Identities=9%  Similarity=0.060  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK  169 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk  169 (276)
                      .++..+...+..++-...||+-|+|-|+++.|
T Consensus        41 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R   72 (284)
T PRK12888         41 LLLVTVAMVGARTFAMAANRIIDREIDARNPR   72 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCC
Confidence            34455566677777889999999999998863

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=85.36  E-value=8.4  Score=35.80  Aligned_cols=40  Identities=10%  Similarity=-0.117  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccceeechh
Q 023874          140 SASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLGTE  179 (276)
Q Consensus       140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~v~lG~~  179 (276)
                      +..+...+..++-...||+-|+|-|+++.|. .=|.-=|+-
T Consensus        50 l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i   90 (290)
T PRK12870         50 IIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL   90 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence            3444455677777889999999999875542 344434443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=85.17  E-value=31  Score=32.35  Aligned_cols=31  Identities=10%  Similarity=-0.006  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 023874          138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG  168 (276)
Q Consensus       138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~G  168 (276)
                      .++..+...+..++-...||+-|+|-|+++-
T Consensus        51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~   81 (300)
T PRK13106         51 LILIFLALFFLRTAGMTNDNLADLEIDAKNP   81 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            3445556667777778899999999999874

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=84.98  E-value=31  Score=31.60  Aligned_cols=54  Identities=9%  Similarity=0.016  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccce-eechhhHHHHHHHHHHHH
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMIL  192 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~v-~lG~~~a~~l~~~l~~~a  192 (276)
                      ++..+...+..++-...||+-|+|.|+++.|   |.+|- ++-++.+..+...+..++
T Consensus        38 ~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g   95 (280)
T TIGR01473        38 LLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG   95 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3444555577777889999999999998553   33333 444555555554444444

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=84.95  E-value=12  Score=34.73  Aligned_cols=40  Identities=8%  Similarity=0.029  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HhcCCCChHhhHhcCCcccce
Q 023874          135 TATVLSASLLVGLTTSLIL-FCSHFHQVEGDRNVGKMSPLV  174 (276)
Q Consensus       135 ~~~~ll~slp~~l~~~~il-l~Nn~~D~e~D~~~Gk~TL~v  174 (276)
                      +|..++.++......+.-| -.||.-|.|.|+.+.|+.=+.
T Consensus        32 ~~~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~   72 (282)
T PRK13105         32 DWLFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE   72 (282)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC
Confidence            3444444443333332222 569999999999998876553

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.73  E-value=13  Score=35.40  Aligned_cols=46  Identities=13%  Similarity=0.106  Sum_probs=29.8

Q ss_pred             HHHHHhcCCCChHhhHhcCCcccce---eechhhHHHHHHHHHHHHHHHH
Q 023874          150 SLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSLL  196 (276)
Q Consensus       150 ~~ill~Nn~~D~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~ayl~~  196 (276)
                      ++-...||+-|+|.|+.++| |=|.   ++-++.+......+..++.++.
T Consensus        64 ~a~~~iND~~D~~~D~~n~r-tRpl~~G~is~~~al~~~~~l~~la~~lg  112 (331)
T PRK12392         64 GFSQSVNDYFDLELDRVNEP-TRPIPSGRLSEKEALWNSIIVLLLAIGLG  112 (331)
T ss_pred             HHHhHHhcceeecccccCCC-CCCCCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence            33467899999999997754 3333   4446666666666655554433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=84.12  E-value=12  Score=35.34  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023874          113 PFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK  169 (276)
Q Consensus       113 ~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk  169 (276)
                      .+....++..+..+       .+++   .++..++.+.+....||.-|+|.|+-+..
T Consensus        45 ~~~~~~a~lL~g~~-------~~~~---~~~~~~L~~~s~~~iNd~~D~eiD~IN~P   91 (307)
T PRK13591         45 ALRIHIAFLLLGLQ-------SSIL---TCIAGGLIIYSVYTLDRALDSEEDAVNRS   91 (307)
T ss_pred             HHHHHHHHHHhCCC-------cchH---HHHHHHHHHHHHHHHhhhccchhhhccCc
Confidence            34445555555444       3433   35566778888899999999999987533

>PLN00012 chlorophyll synthetase; Provisional

Probab=84.11  E-value=13  Score=35.99  Aligned_cols=45  Identities=7%  Similarity=-0.121  Sum_probs=26.8

Q ss_pred             HHHHHHHHhcCCCChHhhHhcCCcccce---eechhhHHHHHHHHHHHH
Q 023874          147 LTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMIL  192 (276)
Q Consensus       147 l~~~~ill~Nn~~D~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~a  192 (276)
                      +...+.-..||+-|.|.|+++++ +=|+   ++.++.+......+..++
T Consensus       134 L~~~~an~iNDy~D~~iD~~~~~-~Rpi~sG~Is~~~al~~~~~l~~~~  181 (375)
T PLN00012        134 FLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLGG  181 (375)
T ss_pred             HHHHHHHHHHCeecHhhhccCCC-CCCcCCCccCHHHHHHHHHHHHHHH
Confidence            44445567899999999988752 2333   344555554444444433

>PRK13595 ubiA prenyltransferase; Provisional

Probab=84.02  E-value=24  Score=33.10  Aligned_cols=21  Identities=19%  Similarity=0.131  Sum_probs=17.5

Q ss_pred             HHHHhcCCCChHhhHhcCCcc
Q 023874          151 LILFCSHFHQVEGDRNVGKMS  171 (276)
Q Consensus       151 ~ill~Nn~~D~e~D~~~Gk~T  171 (276)
                      .+--.||.-|+|.|++|-|+-
T Consensus        62 ~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595         62 LIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             HHHHHHhhhhhhhhccCCCCC
Confidence            456789999999999887764

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=83.96  E-value=28  Score=32.75  Aligned_cols=31  Identities=6%  Similarity=-0.156  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023874          139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK  169 (276)
Q Consensus       139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk  169 (276)
                      ++..+...+..++-...||+-|+|-|++..|
T Consensus        75 ~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R  105 (314)
T PRK12878         75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVAR  105 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence            3344444466666788999999999987543

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=82.47  E-value=22  Score=33.28  Aligned_cols=49  Identities=10%  Similarity=0.074  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCCChHhhHhc-----C--------CcccceeechhhHHHHHHHHHHHHHHH
Q 023874          147 LTTSLILFCSHFHQVEGDRNV-----G--------KMSPLVRLGTERGSVVVKWAVMILYSL  195 (276)
Q Consensus       147 l~~~~ill~Nn~~D~e~D~~~-----G--------k~TL~v~lG~~~a~~l~~~l~~~ayl~  195 (276)
                      +...+-...||+-|+|.|+.+     +        |-...-++-+|.+..+...+.+++..+
T Consensus        52 l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l  113 (297)
T PRK12871         52 FGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL  113 (297)
T ss_pred             HHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            333444589999999999753     1        111223555666666666655555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00