Citrus Sinensis ID: 023876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Secondary Structure (PSIPRED)
cccccEEcccEEEEccccccccccccccccEEccccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHccEEEEEEcccccccccccccccEEEEEccccEEEEEEEccccccccccccEEccccccccEEEEEEcccccccccccccEEEccHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccccHHHHHHcccccccccccccccccccccHHHHHcccccEEEEEEEEEEEcccEEEEcccccccEEEEEEccccEEEEEEccccccccccEEEEccccccccEEEEEEccccccccccccccEEcHHHHHHHHHHHcccccccccEcccc
Coil and Loop (DISEMBL)
MGDIRSLSTGVFICIKcsgihrslgVHISKVLSVKLDEWTNEQVDALAEMggniavnkkyeaytpgnlkkpspnsfideRSDFIRRKYekleffnfdeqallcpypaphrrssssstsssshdkkhyekQATRHRIGIafrnswgrkesesknskkANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKsnlnpvwneslmlsipenipplkvlvydkdtfttddfmgdaeidIQPLVTAAracetpismspcnlgng
Flexible Loop (DISEMBL)
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEaytpgnlkkpspnsfidERSDFIRRKYEKLEFFNFDEQALLCPYPAPHrrssssstsssshdkkhyekqatrhrigiafrnswgrkesesknskkanSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACEtpismspcnlgng
Low Complexity Region (SEG)
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRssssstssssHDKKHYEKQATRHRIGIAFRNSWGRkesesknskkansLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Disordered region (IsUnstruct)
******LSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYT************I*ERSDFIRRKYEKLEFFNFDEQALLCPY******************************IGIAF*******************LVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET************
Disordered Region (DISOPRED)
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN******************************************************ESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM*PC*L***
Disordered Region (DISEMBL)
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYP************************ATRHRIGIAFRNSW************ANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Disordered Region (DISPRO)
*GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF***********************************************************KANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP*SM********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q8L7A4	385	Probable ADP-ribosylation	yes	no	0.949	0.680	0.678	1e-100
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.891	0.729	0.468	9e-65
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.887	0.729	0.472	1e-64
Q5F413	428	Stromal membrane-associat	yes	no	0.311	0.200	0.5	2e-20
Q7TN29	428	Stromal membrane-associat	yes	no	0.311	0.200	0.5	5e-20
Q8WU79	429	Stromal membrane-associat	yes	no	0.311	0.200	0.5	6e-20
Q5EA00	429	Stromal membrane-associat	yes	no	0.311	0.200	0.5	7e-20
Q8IYB5	467	Stromal membrane-associat	no	no	0.275	0.162	0.481	4e-15
Q91VZ6	440	Stromal membrane-associat	no	no	0.275	0.172	0.481	5e-15
Q9FL69	483	Probable ADP-ribosylation	no	no	0.362	0.207	0.435	7e-15

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/271 (67%), Positives = 218/271 (80%), Gaps = 9/271 (3%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SLS GVFICIKCSG+HRSLGVHISKVLSVKLDEWT++QVD L   GGN AVN+++EA   
Sbjct: 74  SLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNI 133

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSS-STSSSSHDK 124
              KKP P+S  +ER+DFIR+KYE+ +F +  + AL C Y  P R ++S  S  S+SH  
Sbjct: 134 DQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGAL-CTYQQPSRTNTSPPSLCSASH-- 190

Query: 125 KHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRD 184
                ++T++RIG AFRNSWGR+ES+ K  KK+NS+  MVEFVGLIKVNVVKGTNLAVRD
Sbjct: 191 -----RSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLAVRD 245

Query: 185 VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 244
           VMTSDPYVILALG Q+VKTRVIK+NLNPVWNE+LMLSIPE +PPLKVLVYDKDTF+TDDF
Sbjct: 246 VMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDF 305

Query: 245 MGDAEIDIQPLVTAARACETPISMSPCNLGN 275
           MG+AEIDIQPLV+AA+A ET     P  LG+
Sbjct: 306 MGEAEIDIQPLVSAAKAYETSSIKEPMQLGS 336

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 168/269 (62%), Gaps = 23/269 (8%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFIC+KC G+HRSLG HISKVLSV LDEW++E+VD++ E+GGN + N  YEA+ P
Sbjct: 42  SANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIP 101

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
               KP P++  D+R  FIR KYE  EF              P  R +S     SS    
Sbjct: 102 EGSSKPGPDASHDQRMRFIRSKYEHQEFLK------------PSLRITS--VRGSSTKTP 147

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV 185
            +   +   +I  +FR         + +S +   L  MVEF+GL+KV + KGTN+A+RD+
Sbjct: 148 AFLSSSLSKKIVDSFR---------TNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDM 198

Query: 186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
           M+SDPYV+L LG Q  ++ V+KSNLNPVWNE LMLS+P N   +K+ V+D DTF+ DD M
Sbjct: 199 MSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIM 258

Query: 246 GDAEIDIQPLVTAARACETPISMSPCNLG 274
           G+AEIDIQPL+T+A A   P       +G
Sbjct: 259 GEAEIDIQPLITSAMAFGDPEMFGDMQIG 287

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/269 (47%), Positives = 170/269 (63%), Gaps = 24/269 (8%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFIC+KC G+HRSLG HISKVLSV LDEW++E+VD++ E+GGN + N  YEA+ P
Sbjct: 42  SANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLP 101

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
               KP P+   D+R  FIR KYE  EF            P+    S   ST SS+    
Sbjct: 102 DTCSKPGPDVNHDQRMRFIRAKYELQEFLK----------PSLRITSGKGSTKSSA---- 147

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV 185
            +   +   +I  +FR         + +S +      MVEF+GL+KV + KGTNLA+RD+
Sbjct: 148 -FLTSSLSRKIMDSFR---------TNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDM 197

Query: 186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
           M+SDPYV+L LG Q ++T V+ SNLNPVWN+ LMLS+PE+  P+K+ VYD DTF+ DD M
Sbjct: 198 MSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIM 257

Query: 246 GDAEIDIQPLVTAARACETPISMSPCNLG 274
           G+A+IDIQPL+T+A A   P       +G
Sbjct: 258 GEADIDIQPLITSAMAFGDPEMFGDMQIG 286

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 4/90 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEA+ P
Sbjct: 40  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAFLP 98

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
            N ++P  +  ++    FIR KYEK ++ +
Sbjct: 99  ENFRRPQTDQAVE---GFIRDKYEKKKYMD 125

GTPase activating protein. May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Gallus gallus (taxid: 9031)

>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P
Sbjct: 40  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 98

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              ++P  +  ++    FIR KYEK ++ +
Sbjct: 99  ETFRRPQIDPAVE---GFIRDKYEKKKYMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P
Sbjct: 40  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 98

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              ++P  +  ++    FIR KYEK ++ +
Sbjct: 99  ETFRRPQIDPAVE---GFIRDKYEKKKYMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P
Sbjct: 40  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 98

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              ++P  +  ++    FIR KYEK ++ +
Sbjct: 99  ETFRRPQIDHAVE---GFIRDKYEKKKYMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P
Sbjct: 45  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLP 103

Query: 66  GNLKKPSPNSFIDERSDFIRR 86
            N ++P      D+  +F  R
Sbjct: 104 ENFRRPQ----TDQAVEFFIR 120

GTPase activating protein that acts on ARF6. Plays a role in clathrin-dependent endocytosis. May play a role in erythropoiesis.

Homo sapiens (taxid: 9606)

>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P
Sbjct: 45  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDM-GNTKARLLYEANLP 103

Query: 66  GNLKKPSPNSFIDERSDFIRR 86
            N ++P      D+  +F  R
Sbjct: 104 ENFRRPQ----TDQAVEFFIR 120

GTPase activating protein that acts on ARF6. Plays a role in clathrin-dependent endocytosis. May play a role in erythropoiesis.

Mus musculus (taxid: 10090)

>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 60/108 (55%), Gaps = 8/108 (7%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ G+FIC++CSGIHRSLGVHISKV S  LD W  EQV  +  M GN   N  +EA  P
Sbjct: 43  SVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM-GNDKANSYWEAELP 101

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSS 113
            N  +           +FIR KYE+  + +  E+A   P     RR S
Sbjct: 102 PNYDRVG-------IENFIRAKYEEKRWVSRGEKARSPPRVEQERRKS 142

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
255544015	382	DNA binding protein, putative [Ricinus c	0.967	0.698	0.736	1e-109
356541563	359	PREDICTED: probable ADP-ribosylation fac	0.923	0.710	0.744	1e-109
224057333	358	predicted protein [Populus trichocarpa]	0.971	0.748	0.706	1e-106
356546368	368	PREDICTED: probable ADP-ribosylation fac	0.931	0.698	0.732	1e-105
356555032	371	PREDICTED: probable ADP-ribosylation fac	0.931	0.692	0.720	1e-104
356506926	365	PREDICTED: probable ADP-ribosylation fac	0.931	0.704	0.730	1e-103
357456691	400	ADP-ribosylation factor GTPase-activatin	0.971	0.67	0.704	1e-103
225465923	376	PREDICTED: probable ADP-ribosylation fac	0.920	0.675	0.669	1e-99
296090359	414	unnamed protein product [Vitis vinifera]	0.920	0.613	0.669	2e-99
297829354	383	hypothetical protein ARALYDRAFT_478135 [	0.949	0.684	0.682	3e-99

>gi|255544015|ref|XP_002513070.1| DNA binding protein, putative [Ricinus communis] gi|223548081|gb|EEF49573.1| DNA binding protein, putative [Ricinus communis]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/269 (73%), Positives = 231/269 (85%), Gaps = 2/269 (0%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SLS GVFICIKCSG+HRSLGVHISKVLS+KLD+WT+EQV+   ++GGN A NKKYEA  P
Sbjct: 66  SLSHGVFICIKCSGVHRSLGVHISKVLSIKLDDWTDEQVNNFIDLGGNAAANKKYEACIP 125

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
            + KKP P++ I+ERSDFIRRKYE L+F N+ +Q ++CPY  P R SS++  SSSS +KK
Sbjct: 126 NDFKKPKPDATIEERSDFIRRKYELLQFLNYSDQ-MICPY-KPQRSSSAAQMSSSSQEKK 183

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV 185
            Y+KQATRHRIG AFRNSWGRK+SE+K SKK+NS+  MVEFVGLIKVNVVKGTNLAVRDV
Sbjct: 184 QYDKQATRHRIGNAFRNSWGRKDSENKQSKKSNSMAGMVEFVGLIKVNVVKGTNLAVRDV 243

Query: 186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
           +TSDPYVIL+LGHQ+V+TRVIK+NLNPVWNESLMLSIP++IP LKVLVYDKDTFTTDDFM
Sbjct: 244 VTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPDHIPALKVLVYDKDTFTTDDFM 303

Query: 246 GDAEIDIQPLVTAARACETPISMSPCNLG 274
           G+AEIDIQPLV AA+A ET     P  LG
Sbjct: 304 GEAEIDIQPLVAAAKAYETSTINEPMQLG 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541563|ref|XP_003539244.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/258 (74%), Positives = 223/258 (86%), Gaps = 3/258 (1%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICIKCSG+HRSLGVHISKVLS+KLDEWT+EQVDAL  +GGN  +N KYEA  P
Sbjct: 44  SSNNGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDALVNLGGNTVINMKYEACLP 103

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
            N+KKP PNS I+ER DFIRRKYE L+F N +E  L CP+   H RSSSS+      DKK
Sbjct: 104 SNIKKPKPNSSIEERYDFIRRKYEFLQFLNIEEN-LSCPFVPSHARSSSSNKFP--QDKK 160

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV 185
           HY+KQAT+ RIG AFRNSWGRK+SE K+SKK+NSL  MVEF+GLIKVNVVKGTNLA+RDV
Sbjct: 161 HYDKQATKSRIGSAFRNSWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDV 220

Query: 186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
           M+SDPYVI++LGHQ+VKTRVIKS+LNP+WNESLMLSIP++IPPLKVLVYDKDTF+TDDFM
Sbjct: 221 MSSDPYVIISLGHQSVKTRVIKSSLNPIWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFM 280

Query: 246 GDAEIDIQPLVTAARACE 263
           G+AEIDIQPLV+AA+A E
Sbjct: 281 GEAEIDIQPLVSAAKAYE 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057333|ref|XP_002299211.1| predicted protein [Populus trichocarpa] gi|222846469|gb|EEE84016.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 219/269 (81%), Gaps = 1/269 (0%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SLS GVFICIKCSG+HRSLGVH+SKVLS+KLDEWT+EQV+AL ++GGN A NKKYEA  P
Sbjct: 41  SLSYGVFICIKCSGVHRSLGVHLSKVLSIKLDEWTDEQVNALIDLGGNTAANKKYEASMP 100

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
            + +KP P++  +ER DFIRRKYE  EF N DEQ +  P+P       + S +  S DKK
Sbjct: 101 DDYRKPRPDASTEERYDFIRRKYELKEFSNCDEQ-MSSPFPGSISSLPTPSNNCPSQDKK 159

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV 185
            YEKQATRHRIG AFRNSWGRK+SE K++KK+ SL  MVEF+GLIKVNVVKGTNLAVRDV
Sbjct: 160 QYEKQATRHRIGNAFRNSWGRKDSEHKHTKKSYSLAGMVEFIGLIKVNVVKGTNLAVRDV 219

Query: 186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
           MTSDPYVI++LG Q+V+TRVIK+NLNP+WNESLMLSIPE IPPLKVLVYDKDTFTTDDFM
Sbjct: 220 MTSDPYVIISLGQQSVRTRVIKNNLNPIWNESLMLSIPEQIPPLKVLVYDKDTFTTDDFM 279

Query: 246 GDAEIDIQPLVTAARACETPISMSPCNLG 274
           G+AEIDIQPLV AA+A E         LG
Sbjct: 280 GEAEIDIQPLVAAAKAYENSTITESMQLG 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546368|ref|XP_003541598.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 221/265 (83%), Gaps = 8/265 (3%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S S GVFICIKCSGIHRSLGVHISKVLS+KLDEWT+EQVDALA++GGN  +NKKYEA  P
Sbjct: 44  SSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLP 103

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRS-------SSSSTS 118
            N++KP P+S I+ERS+FIRRKYE  +F + D+  L CP      RS       SS+S  
Sbjct: 104 SNIRKPKPHSSIEERSEFIRRKYEMQQFVDCDDN-LSCPIIPSQGRSISLALAQSSTSYY 162

Query: 119 SSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGT 178
           +S  DKK  EKQ ++HRIG AFRNSWGRK+SE K +KK+ SL  MVEFVGLIKVNVVKGT
Sbjct: 163 NSFMDKKPSEKQQSKHRIGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGT 222

Query: 179 NLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 238
           +LA+RDVMTSDPYVIL+LGHQ+VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT
Sbjct: 223 HLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 282

Query: 239 FTTDDFMGDAEIDIQPLVTAARACE 263
           F+TDDFMG+AEIDIQPLV AA+A E
Sbjct: 283 FSTDDFMGEAEIDIQPLVIAAKAYE 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555032|ref|XP_003545843.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 219/265 (82%), Gaps = 8/265 (3%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S S GVFICIKCSGIHRSLGVHISKVLS+KLDEWT+EQVDALA++GGN  +NKKYEA  P
Sbjct: 47  SSSFGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLP 106

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRS-------SSSSTS 118
            N++KP P+S I+ERS+FIRRKYE  +F  +D+  L CP      RS       SS+S  
Sbjct: 107 SNIRKPKPHSSIEERSEFIRRKYEMQQFIGYDD-GLSCPIVPSQGRSISLALAQSSTSYY 165

Query: 119 SSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGT 178
           +S  D K  EK  ++HRIG  FRNSWGRK+SE K++KK+ SL  MVEFVGLIKVNVVKGT
Sbjct: 166 NSFMDNKPSEKHQSKHRIGNTFRNSWGRKDSEHKSAKKSTSLAGMVEFVGLIKVNVVKGT 225

Query: 179 NLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 238
           +LA+RDVMTSDPYVIL+LGHQ+VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT
Sbjct: 226 HLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 285

Query: 239 FTTDDFMGDAEIDIQPLVTAARACE 263
           F+TDDFMG+AEIDIQPLV AA+A E
Sbjct: 286 FSTDDFMGEAEIDIQPLVIAAKAYE 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506926|ref|XP_003522224.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/263 (73%), Positives = 218/263 (82%), Gaps = 6/263 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S S GVFICIKCSGIHRSLGVHISKVLS+KLDEWT+EQVDAL + GGN  +N KYEA  P
Sbjct: 42  SSSHGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKFGGNTVINMKYEACLP 101

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSS---- 121
            N+KKP PNS I+ERSDFIRRKYE L+F + +E  L CP+   H R SS S  SSS    
Sbjct: 102 SNIKKPKPNSSIEERSDFIRRKYEFLQFLDIEEN-LSCPFVPSHARCSSYSERSSSSNNF 160

Query: 122 -HDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNL 180
             DKKHY+KQ T+  IG  FRNSWGRK+SE K+SKK+NSL  M+EF+GLIKVNVVKGTNL
Sbjct: 161 PQDKKHYDKQETKSLIGSTFRNSWGRKDSEHKSSKKSNSLAGMIEFIGLIKVNVVKGTNL 220

Query: 181 AVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 240
            +RDVMTSDPYVI++LGHQ+VKTRVIKS+LNPVWNESLMLSIP+NIP LKVLVYDKD F+
Sbjct: 221 VIRDVMTSDPYVIISLGHQSVKTRVIKSSLNPVWNESLMLSIPDNIPLLKVLVYDKDIFS 280

Query: 241 TDDFMGDAEIDIQPLVTAARACE 263
           TDDFMG AEIDIQPLV+AA+A E
Sbjct: 281 TDDFMGKAEIDIQPLVSAAKAYE 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456691|ref|XP_003598626.1| ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|355487674|gb|AES68877.1| ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|388514945|gb|AFK45534.1| unknown [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/274 (70%), Positives = 231/274 (84%), Gaps = 6/274 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S S GVFICIKCSGIHRSLGVHISKVLS+ LD+WT+EQVD+L  +GGN  +NKKYEA  P
Sbjct: 78  SSSLGVFICIKCSGIHRSLGVHISKVLSLNLDDWTDEQVDSLVNLGGNTLINKKYEACVP 137

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPY-PAPHRRSSSSSTSSSSH-- 122
             +KKP PNS I+ERSDFIRRKYE  +F +  E+ L+CP+ P+  R +SSS +SSSS+  
Sbjct: 138 SYVKKPKPNSSIEERSDFIRRKYELQQFLD-SEENLICPFIPSHSRTTSSSHSSSSSYNP 196

Query: 123 --DKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNL 180
             +KK Y+KQ TR+RIG++FRNSWGRK+SESK++KK+NSL  MVEFVGLIKVNVVKGTNL
Sbjct: 197 PQEKKRYDKQTTRNRIGLSFRNSWGRKDSESKSTKKSNSLAGMVEFVGLIKVNVVKGTNL 256

Query: 181 AVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 240
           A+RD++TSDPYVIL+LGHQ+VKTRVIK+NLNPVWNESLMLSIPENIPPLK++VYDKD+F 
Sbjct: 257 AIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKIIVYDKDSFK 316

Query: 241 TDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
            DDFMG+AEIDIQPLV+AA+A E    M    LG
Sbjct: 317 NDDFMGEAEIDIQPLVSAAKAYEKSSIMESMQLG 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465923|ref|XP_002270290.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/272 (66%), Positives = 207/272 (76%), Gaps = 18/272 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S+S GVFICIKCSG+HRSLG H+SKVLS+KLDEWT+EQVD L  MGGN   N KYEA  P
Sbjct: 70  SVSLGVFICIKCSGVHRSLGAHVSKVLSIKLDEWTDEQVDTLTGMGGNSEANMKYEASIP 129

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
             ++KP P+S  +ERSDFIRRKYE  +FFN DEQ + CP+P                +KK
Sbjct: 130 DYIRKPRPDSSTEERSDFIRRKYEMQQFFNSDEQ-MFCPFPP--------------QEKK 174

Query: 126 HYEKQATRHRI---GIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAV 182
           HYEKQ T HR+   G+AFRNSW RKE E K  KK++S   M+EFVGLIKVNVVKGTNLAV
Sbjct: 175 HYEKQTTTHRLHGLGLAFRNSWRRKEPEHKPVKKSSSSAGMIEFVGLIKVNVVKGTNLAV 234

Query: 183 RDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 242
           RDVMTSDPYV+LALG Q+VKTRVIK+NLNPVWNE LMLSIPE IPPL+V VYDKDTF+TD
Sbjct: 235 RDVMTSDPYVLLALGQQSVKTRVIKNNLNPVWNERLMLSIPEQIPPLRVFVYDKDTFSTD 294

Query: 243 DFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
           DFMG+AEIDIQPLV+AA A E      P   G
Sbjct: 295 DFMGEAEIDIQPLVSAAIAHENSTLNEPMEFG 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090359|emb|CBI40178.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/272 (66%), Positives = 207/272 (76%), Gaps = 18/272 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S+S GVFICIKCSG+HRSLG H+SKVLS+KLDEWT+EQVD L  MGGN   N KYEA  P
Sbjct: 108 SVSLGVFICIKCSGVHRSLGAHVSKVLSIKLDEWTDEQVDTLTGMGGNSEANMKYEASIP 167

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
             ++KP P+S  +ERSDFIRRKYE  +FFN DEQ + CP+P                +KK
Sbjct: 168 DYIRKPRPDSSTEERSDFIRRKYEMQQFFNSDEQ-MFCPFPP--------------QEKK 212

Query: 126 HYEKQATRHRI---GIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAV 182
           HYEKQ T HR+   G+AFRNSW RKE E K  KK++S   M+EFVGLIKVNVVKGTNLAV
Sbjct: 213 HYEKQTTTHRLHGLGLAFRNSWRRKEPEHKPVKKSSSSAGMIEFVGLIKVNVVKGTNLAV 272

Query: 183 RDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 242
           RDVMTSDPYV+LALG Q+VKTRVIK+NLNPVWNE LMLSIPE IPPL+V VYDKDTF+TD
Sbjct: 273 RDVMTSDPYVLLALGQQSVKTRVIKNNLNPVWNERLMLSIPEQIPPLRVFVYDKDTFSTD 332

Query: 243 DFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
           DFMG+AEIDIQPLV+AA A E      P   G
Sbjct: 333 DFMGEAEIDIQPLVSAAIAHENSTLNEPMEFG 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829354|ref|XP_002882559.1| hypothetical protein ARALYDRAFT_478135 [Arabidopsis lyrata subsp. lyrata] gi|297328399|gb|EFH58818.1| hypothetical protein ARALYDRAFT_478135 [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 219/271 (80%), Gaps = 9/271 (3%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SLS GVFICIKCSG+HRSLGVHISKVLSVKLDEWT++QVD L   GGN AVN+++EA   
Sbjct: 72  SLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNQRFEACNI 131

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSS-STSSSSHDK 124
              KKP P+S  +ER+DFIR+KYE+ +F +  + AL CPY  P R ++S  S  S+SH  
Sbjct: 132 DQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGAL-CPYQQPSRTNTSPPSLCSASH-- 188

Query: 125 KHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRD 184
                ++T++RIG AFRNSWGR+ES+ K  KK+NS+  MVEFVGLIKVNVVKGTNLAVRD
Sbjct: 189 -----RSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLAVRD 243

Query: 185 VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 244
           VMTSDPYVILALG Q+VKTRVIK+NLNPVWNE+LMLSIPE +PPLKVLVYDKDTF+TDDF
Sbjct: 244 VMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDF 303

Query: 245 MGDAEIDIQPLVTAARACETPISMSPCNLGN 275
           MG+AEIDIQPLV+AA+A ET     P  LG+
Sbjct: 304 MGEAEIDIQPLVSAAKAYETSSIKEPMQLGS 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.952	0.683	0.640	5.6e-84
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.405	0.333	0.589	2.9e-60
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	0.416	0.341	0.573	2.9e-60
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.333	0.497	0.543	5.3e-24
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.340	0.569	0.510	1.1e-23
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.355	0.583	0.510	1.1e-23
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	0.347	0.551	0.5	2.9e-23
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.355	0.563	0.489	6.1e-23
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.340	0.522	0.5	2.1e-22
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	0.355	0.553	0.469	4.3e-22

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 173/270 (64%), Positives = 201/270 (74%)

Query:     6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
             SLS GVFICIKCSG+HRSLGVHISKVLSVKLDEWT++QVD L   GGN AVN+++EA   
Sbjct:    74 SLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNI 133

Query:    66 GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRXXXXXXXXXXHDKK 125
                KKP P+S  +ER+DFIR+KYE+ +F +  + AL C Y  P R               
Sbjct:   134 DQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGAL-CTYQQPSRTNTSPPSLCSA---S 189

Query:   126 HYEKQATRHRIGIAFRNSWGRXXXXXXXXXXXXXLVAMVEFVGLIKVNVVKGTNLAVRDV 185
             H   ++T++RIG AFRNSWGR             +  MVEFVGLIKVNVVKGTNLAVRDV
Sbjct:   190 H---RSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLAVRDV 246

Query:   186 MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245
             MTSDPYVILALG Q+VKTRVIK+NLNPVWNE+LMLSIPE +PPLKVLVYDKDTF+TDDFM
Sbjct:   247 MTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFM 306

Query:   246 GDAEIDIQPLVTAARACETPISMSPCNLGN 275
             G+AEIDIQPLV+AA+A ET     P  LG+
Sbjct:   307 GEAEIDIQPLVSAAKAYETSSIKEPMQLGS 336

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 66/112 (58%), Positives = 87/112 (77%)

Query:   163 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
             MVEF+GL+KV + KGTNLA+RD+M+SDPYV+L LG Q ++T V+ SNLNPVWN+ LMLS+
Sbjct:   175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSV 234

Query:   223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
             PE+  P+K+ VYD DTF+ DD MG+A+IDIQPL+T+A A   P       +G
Sbjct:   235 PESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIG 286

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 66/115 (57%), Positives = 86/115 (74%)

Query:   160 LVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLM 219
             L  MVEF+GL+KV + KGTN+A+RD+M+SDPYV+L LG Q  ++ V+KSNLNPVWNE LM
Sbjct:   173 LEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELM 232

Query:   220 LSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
             LS+P N   +K+ V+D DTF+ DD MG+AEIDIQPL+T+A A   P       +G
Sbjct:   233 LSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIG 287

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 50/92 (54%), Positives = 70/92 (76%)

Query:   167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
             +G+++V+V +G NLA+RD  TSDPYV++ L +Q +KTRVI +N NPVWNE L LSI +  
Sbjct:     6 LGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVN 65

Query:   227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258
              P+++ V+DKD F+ DD MGDAEID +P + A
Sbjct:    66 DPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEA 97

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 48/94 (51%), Positives = 71/94 (75%)

Query:   163 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
             M E VGL+++ V +G NLA RD ++SDP+V++ +G Q +KTRV+++N NP WNE L L++
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLAL 60

Query:   223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 256
                  P+ ++VYDKDTFT+ D MGDA+IDI+P +
Sbjct:    61 RHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFL 94

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 50/98 (51%), Positives = 70/98 (71%)

Query:   163 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
             M   +G+++V V +G NLAVRDV +SDPYV+L LG Q +KT+V+K N+NP W E L  ++
Sbjct:     4 MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query:   223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
              +   PL ++VYD D F+ DD MGDAEID++P + A R
Sbjct:    64 TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALR 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 48/96 (50%), Positives = 72/96 (75%)

Query:   161 VAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLML 220
             V M E VGL+++ V +G +LA RD ++SDP+V++ +G Q +K+  +K+N NP WNE L L
Sbjct:     8 VEMKELVGLVRILVKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEELTL 67

Query:   221 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 256
             +I +   P+K++VYDKDTFT DD MGDA+ID++P +
Sbjct:    68 AIEDPNEPVKLMVYDKDTFTADDKMGDAQIDMKPFL 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 48/98 (48%), Positives = 70/98 (71%)

Query:   163 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
             M   +GL++++V++G NLA+RD  +SDPYVI+ +G Q ++TRV+K NLN  WNE L LS+
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:   223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
              +   P+K++VYD+D F+ DD MGDA   I P + A R
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIR 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/94 (50%), Positives = 69/94 (73%)

Query:   167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
             +GL+ ++V +G NLA+RD  +SDPY++L +  QT+KTRV+K N NPVWNE + ++I +  
Sbjct:     6 LGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPN 65

Query:   227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
              P+++ V+D D FT DD MGDA IDIQP + A +
Sbjct:    66 VPIRLTVFDWDKFTGDDKMGDANIDIQPYLEALK 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 46/98 (46%), Positives = 70/98 (71%)

Query:   163 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
             M + +GL+++ + +G NLAVRD+ +SDPYV++ +G Q +KTRVI  ++NP WNE L LS+
Sbjct:    13 MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query:   223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
              ++   + + VYD D F+ DD MGDAE +I+P + A R
Sbjct:    73 TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALR 110

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7A4	AGD11_ARATH	No assigned EC number	0.6789	0.9492	0.6805	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-57
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	2e-33
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	2e-25
cd00030	102	cd00030, C2, C2 domain	1e-23
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	1e-22
pfam00168	85	pfam00168, C2, C2 domain	2e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-20
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	5e-20
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	7e-20
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-18
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-17
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-15
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-14
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-14
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	5e-14
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	3e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-13
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-12
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	3e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	3e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-12
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	6e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-11
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	4e-11
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	9e-11
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-10
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-10
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-10
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-09
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	2e-09
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	2e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-09
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-08
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-08
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	4e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	4e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-07
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-07
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	4e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	5e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-07
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	5e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	6e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	8e-07
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	8e-07
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	8e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	9e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	9e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-06
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	4e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	5e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	6e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	8e-06
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	1e-05
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	8e-05
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	8e-05
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-04
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	1e-04
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	2e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	3e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	4e-04
PLN03131	705	PLN03131, PLN03131, hypothetical protein; Provisio	7e-04
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	0.002
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.002
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.002
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.003

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  179 bits (457), Expect = 3e-57
 Identities = 64/108 (59%), Positives = 81/108 (75%)

Query: 167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
           +GL+KV VV+GTNLAVRD  +SDPYV+L LG+Q VKTRVIK NLNPVWNE L LS+P  +
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 274
            PLK+ V+DKDTF+ DD MG+AEID++PLV AA+      +     + 
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIK 108

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  117 bits (296), Expect = 2e-33
 Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SL+ G+FICI+CSG+HRSLGVHISKV S+ LD+WT EQ++ +   GGN   N+ +EA  P
Sbjct: 28  SLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKA-GGNKRANEFWEANLP 86

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEF 93
              K P  +S  ++R  FIR KY +  F
Sbjct: 87  PP-KPPPSSSDREKRESFIRAKYVEKLF 113

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ GVF+CI+CSGIHRSLGVHISKV S+ LD WT E++  L + GGN   N  +E+   
Sbjct: 25  SVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLL-QKGGNENANSIWESNLD 83

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEF 93
               KP  +    +   FI  KYE+  F
Sbjct: 84  DFSLKPPDDDDQQKYESFIAAKYEEKLF 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           ++V V++  NL  +D+   SDPYV ++LG  Q  KT+V+K+ LNPVWNE+    + +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 228 P-LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
             L V V+DKD F+ DDF+G+ EI +  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score = 94.5 bits (235), Expect = 1e-22
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAY-T 64
           S++ GVF+CI C+G+HRSLGVHISKV S+ LD WT E++  + E+GGN   N+ YE    
Sbjct: 35  SVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRM-EVGGNSNANRFYEKNLL 93

Query: 65  PGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHD 123
              L              +IR+KYE  +F +        P       +SS+ T  S  D
Sbjct: 94  DQLLLPIKAKYDSSVAKKYIRKKYELKKFIDDSSS----PSDFSSFSASSTRTVDSVDD 148

Length = 319

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 88.1 bits (219), Expect = 2e-22
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV---KTRVIKSNLNPVWNESLMLSI-PE 224
           ++V V+   NL  +D+   SDPYV ++LG Q     KT+V+K+ LNPVWNE+    +   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAE 249
            +  L++ VYD D F  DDF+G+  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV---KTRVIKSNLNPVWNESLMLSI-P 223
            + V ++   NL  +D    SDPYV ++L        KT+V+K+ LNPVWNE+    + P
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
             +  L++ VYDKD F  DDF+G   I +  L+   R
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 82.7 bits (205), Expect = 5e-20
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENI 226
            + +++ +G NLA RD   TSDPYV    G +TV K++ I  NLNPVW+E   L I +  
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257
            PL + V+D D   TDDFMG A +D+  L  
Sbjct: 61  QPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL 91

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 82.3 bits (204), Expect = 7e-20
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 13/95 (13%)

Query: 168 GLIKVNVVKGTNLAVRDVM-------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLML 220
           G+++++V++  +L  +D          SDPYVI+ +G QT K++VIK NLNP WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 221 SIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
            + E   P   L++ ++D+D    DDF+G   ID+
Sbjct: 61  VVDEV--PGQELEIELFDEDP-DKDDFLGRLSIDL 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 168 GLIKVNVVKGTNLAVRDVM---TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           G+++V+VV+  +LA +D      SDPY IL++G Q  KT+ I + LNP WN      I  
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 225 NIPP-LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 270
                LK++++DKD F   D++G+ +I ++ +       +     S 
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFA-----DGKTGQSD 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVMT--SDPYVILAL---GHQTVKTRVIKSNLNPVWNES-LMLS 221
           G++ V + + T+L   D  T  SDPYV  +    G     TR+I+ +LNPVW E+  +L 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            P+ +     L   ++D D FT DD +G  EID++ L
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 69.1 bits (170), Expect = 8e-15
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 169 LIKVNVVKGTNLAVRDVMT-SDPYVILALGHQTVKTR--VIKSNLNPVWNESLML--SIP 223
           L++V VV+  NL  +D    SDPY+ + LG + +  R   I + LNPV+ +   L  ++P
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDI 252
            N   LK+ V D D   +DD +G+  ID+
Sbjct: 61  GN-SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 170 IKVNVVKGTNLAVRDVMT-SDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIP 227
           + V+V+   NL   D    SDP+V   L  + V KT+ IK  LNPVWNES  + +P  + 
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 228 P-LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
             LKV VYD D    DD +G A ID+  L
Sbjct: 61  AVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLML 220
           +++V V+ G +LA +D+   SDPYV ++L          +V+T+ IK  LNP WNE    
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 221 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS 267
            +      L   V+D++  T DDF+G  E+ +  L T     E   +
Sbjct: 61  RVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYT 107

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 189 DPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP--PLKVLVYDKDTFTTDDFMG 246
           DP+VI++ G +  +T   +  LNPV+NE L   +  +     ++  V DKD F+ +D++ 
Sbjct: 27  DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

Query: 247 DAEIDIQPLVTAAR 260
              + +Q L+ AA 
Sbjct: 87  TGSLSVQELLNAAP 100

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 64.9 bits (159), Expect = 3e-13
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 12/79 (15%)

Query: 188 SDPYVILALGHQTVKTRVIKSNLNPVWNESLM---LSIPENI------PPLKVL-VYDKD 237
           SDP+  ++  +Q+ +T VIK  L+P W+++L+   + +  +       PPL V+ ++D+D
Sbjct: 22  SDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81

Query: 238 TFTTDDFMGDAEIDIQPLV 256
           +   D+F+G +    +PLV
Sbjct: 82  SVGKDEFLGRSV--AKPLV 98

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 189 DPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPP----LKVLVYDKDTFTTDD 243
           DPYVI+    Q  K++V K    NP WNE    ++          L + + DKD F+ DD
Sbjct: 23  DPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDD 82

Query: 244 FMGDAEIDIQPLVTAAR 260
           F+G+A I ++ L     
Sbjct: 83  FIGEATIHLKGLFEEGV 99

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
              +G + V +V+G +L   +    SDPY  +++G Q  KT+V+   LNP WN S+   +
Sbjct: 11  ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 223 PE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI 266
            +     L + V+D+D F+ DDF+G  EI +  ++   +  + PI
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPI 115

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 169 LIKVNVVKGTNLAVRDVMT-SDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI-PENI 226
           ++ + +V+G NL   D    SDPYV   LG++  K++V    LNP W E   L +  +  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEIDI 252
             L++ V+DKDT   D+F+G  EID+
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 174 VVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP-PLKV 231
           V++  +LA +D   TSDP+V +    QT++T V+K +  P WNE     + E    PL V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 232 LVYDKDTFTTDDFMGDAEIDIQPLVTA 258
            V+D D  + +DF+G     IQ L  A
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQA 92

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 168 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVI-KSNLNPVWNESLMLSIPEN 225
           G + V V+K  NL  +  +   DPY +L +G  T KT+   +   +P W+E L   I E+
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 226 IPP-LKVLVYDKDTFTTDDFMGDAEIDIQP 254
             P LKV V+D D     D +GD E+D+ P
Sbjct: 61  KKPILKVAVFD-DDKRKPDLIGDTEVDLSP 89

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
           G ++V V++ + LA  D+   SDP+ +L L +  ++T  I   LNP WN+     I +  
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257
             L+V VYD+D     +F+G   I   PL++
Sbjct: 61  DVLEVTVYDEDKDKKPEFLGKVAI---PLLS 88

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 170 IKVNVVKGTNLAV--RDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPENI 226
           +KV VV   +L V  R    +D +V +  G  T KT V+K +LNPVWN E     + +  
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 227 ---PPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 256
               PL++ V D DT++ +D +G   ID+ PL+
Sbjct: 61  LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLL 93

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           L+ V V++ TN+   D++ T D YV L L     +  +T+ IK+++NPVWNE+    I  
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 225 NIPP-LKVLVYDKDTFTTDDFMGDAEIDI 252
            +   L++ V D+D    DD +G    D+
Sbjct: 61  QVKNVLELTVMDEDYV-MDDHLGTVLFDV 88

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 221
             I VN++K  NL   D+  TSDPYV + L +     +  KT + K  LNPV+NES + +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 222 IP-ENI--PPLKVLVYDKDTFTTDDFMG 246
           IP E +    L + V DKD  + +D +G
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 156 KANSLVAM-VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVW 214
           +A  L  M    +  +K   +      V      DPYV ++   Q VKT V K++ NP W
Sbjct: 8   RAEDLPQMDSGIMANVKKAFLGEKKELV------DPYVEVSFAGQKVKTSVKKNSYNPEW 61

Query: 215 NESLMLSIPENIPPL----KVLVYDKDTFTTDDFMGDAEIDIQ 253
           NE   +  PE  PPL    K+ + D D    DD +G   ID+ 
Sbjct: 62  NEQ--IVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLS 102

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 172 VNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLK 230
           V+V     L+ +D    +DPYVI+    ++V++ V K  L+P ++   +    +   P+K
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 231 VLVYDKDTFTTDDFMGDAEIDIQP 254
           + V++ +    D+F+G A +   P
Sbjct: 67  IQVWNSNLL-CDEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 168 GLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
             + V V+K  NL        SDPYV ++L          KT V K  LNPV+NE+    
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMG 246
           +P        L + V DKD+   ++ +G
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 175 VKGTNLAVRDVMT-SDPYVILALGHQTVK-------TRVIKSNLNPVWNESL-MLSIPEN 225
           +   NL  +DV++ SDP+V++ +             T VIK+NLNP +  +  +    E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 226 IPPLKVLVYDKDTFTTD----DFMGDAEIDIQPLVTA 258
           +  L+  VYD D+ + D    DF+G+AE  +  +V++
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 167 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTV--KTRVIKSNLNPVWNESLMLSI 222
           +G++ V +     L   D++  T DPYV  ++ ++    +T+V K   NPVWNE+  + +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV 60

Query: 223 PENIPPLKVLVYDKDTFTTDDFMGDAEID 251
                PL + VYD +    D  +G AE D
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 170 IKVNVVKGTNLAVRD-VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP 228
           I + VV    L  +D   TSDPYV + +G    +T+ I  NLNPVWNE        +   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 229 LKVLVYDKD---------TFT--TDDFMGDAEIDIQPL 255
           +KV V+D+D          FT  +DDF+G   I+++ L
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 223
           G++ V +++  NL  RD   T+DPY  + L      T ++++ K  LNP ++ES +  +P
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 224 ENIPP---LKVLVYDKDTFTTDDFMGDAEI 250
               P   L+VL+YD D F+ D+ +G  E+
Sbjct: 76  PQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 172 VNVVKGTNLAVR-DVMTSDPYV-ILALGHQTVK----TRVIKSNLNPVWNESLMLSIPEN 225
           V V++  +L  R D    +PYV +  L  ++ K    T+ +K  LNP WN++   S   N
Sbjct: 20  VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS---N 76

Query: 226 IPP-------LKVLVYDKDTFTTDDFMGDAEIDIQ 253
           +         L+V V+D D    +DF+G+  ID+ 
Sbjct: 77  VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLMLS 221
             + V V +  NL   D    SDPYV L L     ++T  KT+ IK  LNPVWNE+    
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 222 IPENIPP--LKVLVYDKDTFTTDDFMG 246
           +        L + V+D D  T +DFMG
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 6  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA 55
          S++ G+F+CI CS +HRSLGVHIS V S  LD W++EQ+  +   G N A
Sbjct: 37 SVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRA 86

Length = 395

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 172 VNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLS---IPENIPP 228
           V VVK   L      ++DP V + LG+    T+ I+   NP WN+    S   +  +   
Sbjct: 4   VRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGST-- 58

Query: 229 LKVLVYDKDTFTTDDFMGDAEIDIQ 253
           L+V V+DKD    DDF+G    D+ 
Sbjct: 59  LEVSVWDKDK-AKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 13/92 (14%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQ-----TVKTRVIKSNLNPVWNESLMLS 221
           ++V ++   NL   D   +SDP+V + L   H      T KT+V K  L P+++ES   +
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 222 IP-----ENIPPLKVLVYDKDTFTTDDFMGDA 248
           +P          L   V D D   ++DF G+A
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPL 229
           + +V+G NL  +D+  +SDPY I+ + ++ + +T  +   LNP W E   + +P     +
Sbjct: 4   IRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTV 63

Query: 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 270
              V D+DT + DD +G   +  + +    R  +  ++++ 
Sbjct: 64  SFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE 104

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYV-ILALGHQTVK--TRVIKSNLNPVWNESLMLSIPEN 225
           + + ++K   L  +D   TSDP+V I  L  +  K  T+V + NLNP WNE+ +    E 
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF---EG 74

Query: 226 IPPLKVL-------VYDKDTFTTDDFMGDAEIDI 252
            P  K+        V D D F+ +D +G+  + +
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVK---TRVIKSNLNPVWNESLMLSIP 223
             + V +++  +L   D+  TSDPYV + L     K   T+V +  LNPV+NE+    +P
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 224 EN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 252
            +      L   VYD D F+  D +G+  + +
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 168 GLIKVNVVKGTNL----AVRDVMTSDPYV-ILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
           G++++++ K  +L     V  +   DPYV +L  G    +T  I + LNPVW+E L + +
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKI---DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 223 PENIPPLKVL---VYDKDTFTTDDFMGDAEIDIQPLV 256
                P + +   V D +    D  +G  EI++  L+
Sbjct: 58  ---TSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLI 91

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPE 224
            VG  +  + + ++      +TSDPY  + L    V +TRVI+++ NPVWNES  +    
Sbjct: 36  LVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAH 95

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA 261
               ++  V D D       +G A I ++ L++    
Sbjct: 96  YASHVEFTVKDNDVVGA-QLIGRAYIPVEDLLSGEPV 131

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 170 IKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVIKSNLNPVWNESL-----MLSIP 223
           + V V++ T L   D  TS D YV +  G Q  +T VI +N NP WN +       LS  
Sbjct: 30  LTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSP- 87

Query: 224 ENIPPLKVLVYDKDTFTTDDFMG 246
                L+  V+D+D    DD +G
Sbjct: 88  --GGKLRFEVWDRDNGWDDDLLG 108

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 167 VGLIKVNVVKGTNLAVRDVM---TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSI 222
           +G+++V +     L   D     T DPY+ +    + + KTRV K+ LNPVWNE+  + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
                PL + +YD ++F +D  +G  ++D+  L
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALL 527

Length = 1227

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 170 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP- 228
           ++V V++   L        DP V + +G Q   T V K    P +NE        +  P 
Sbjct: 6   VRVRVIEARQLVG---GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNE--YFFFNFHESPD 60

Query: 229 ------LKVLVYDKDTFTTDDFMGDAEIDI 252
                 +K+ VYD  +  +D  +G  ++D+
Sbjct: 61  ELFDKIIKISVYDSRSLRSDTLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 168 GLIKVNVVKGTNLAVRDV--MTSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLML 220
           G ++V++ +  NLA  D     S+PYV + L      Q+  KT V K+  NPV+NE+L  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 221 SIPENIPPLKVL---VYDKDTFTTDDFMGDAEIDIQ 253
            I ++    + L   V+  D F  + F+G+ EI + 
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 172 VNVVKGTNL-AVRDVMTSDPYVIL---ALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           + +V+  NL A      SDPYV L       +  KTR I   LNP W+E   L +P   P
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 228 P-LKVLVYDKDTFTTDDFMGDA 248
             +   V+D+      D  G A
Sbjct: 65  LWISATVWDRSFVGKHDLCGRA 86

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV---KTRVIKSNLNPVWNESLMLSIP 223
           + V V+K  +L   DV   +DPYV + L  G + +   KT V K  LNPV+NES +  IP
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 224 ----ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
               E+I  ++ LV D D  T ++ +G   +  +   +   
Sbjct: 77  SEELEDI-SVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGH 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
           G + + ++K  NL   D+   SDPYV ++L  +       KT V K+ LNP +NE+L+  
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 222 IP-ENIP--PLKVLVYDKDTFTTDDFMG 246
           +P EN+    L + V D D    ++ +G
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 172 VNVVKGTNLAVRDV--MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           V+V++  +LA  D     SDPYV   L          KT V K  LNPV+NE+L   +  
Sbjct: 19  VHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER 78

Query: 225 NIPPLKVL---VYDKDTFTTDDFMGDAEIDI 252
              P +VL   V+ +D+   + F+G+ E+D+
Sbjct: 79  EELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT-----VKTRVIKSNLNPVWNESLMLS 221
           G + V +++  NL   DV   SDPYV + L          KT + K  LNP +NES    
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 222 IP-ENIPP--LKVLVYDKDTFTTDDFMG 246
           +P E I    L V V D D    +D +G
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 161  VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESL 218
            V MVE  G + + +  G NL   D    SDP+V L L  ++V KT+V+K  LNPVWNE  
Sbjct: 1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEF 1092

Query: 219  MLSIPENIPP-LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
             + +   +   L + V D D+   +D +G AEID+  L
Sbjct: 1093 TIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKL 1130

Length = 1227

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 172 VNVVKGTNLAVRDVMT-SDPYVILALGHQTVK-----TRVIKSNLNPVWNESLMLSIPEN 225
           V +++  NLA  D    SDP+V L L     K     T+V K  LNP +NE     I  +
Sbjct: 17  VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76

Query: 226 IPPLKVL---VYDKDTFTTDDFMGDAEIDIQ 253
               K L   V+DKD   ++D++G  ++ I 
Sbjct: 77  DLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 49.7 bits (118), Expect = 8e-07
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 183 RDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT 241
           R V+TSDPYV + +   T+ +TRV+K++  P+W+E   +SI      L+  V D D F  
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA 131

Query: 242 DDFMGDAEIDIQPLVTAAR 260
              +G A+I ++ + +  R
Sbjct: 132 -QIIGTAKIPVRDIASGER 149

Length = 868

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 172 VNVVKGTNLAVRD--VMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESL-MLSIPE 224
           VN+++  +L   D    TSDPYV L L     H+ VKTRV++   NPV++E+     IP 
Sbjct: 20  VNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHK-VKTRVLRKTRNPVYDETFTFYGIPY 78

Query: 225 NIPP---LKVLVYDKDTFTTDDFMGDA 248
           N      L   V   D ++ DD +G+ 
Sbjct: 79  NQLQDLSLHFAVLSFDRYSRDDVIGEV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI--PENIP- 227
           V VV   +L  +D   +S  YV L    Q  +TR    +LNPVWNE L+ ++  P  +  
Sbjct: 4   VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSN 63

Query: 228 -PLKVLVYDKDTFT-TDDFMG 246
             L+V VY+         F+G
Sbjct: 64  LVLEVYVYNDRRSGRRRSFLG 84

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 175 VKGTNLAVRDVM-TSDPYVILALGHQTV------KTRVIKSNLNPVWNESLMLSIPENIP 227
             G  L  +D    SDP++ ++   +        +T VIK+ LNPVW        P  IP
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-------PFTIP 59

Query: 228 -----------PLKVLVYDKDTFTTDDFMGDAE 249
                      P+K+ VYD D+    D +G+ E
Sbjct: 60  LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFE 92

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 170 IKVNVVKGTNLAVRDVMTS-DPYVILAL-GHQTVKTRVIKSNLNPVWNESLMLSI-PENI 226
           +++ V+    LA RD+    DP+ ++ + G QT  T V K  L+P WNE   L++ P +I
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 227 PPLKVLVYDKDTF--TTDDFMGDAEI---DIQPLVTAAR 260
             + + V+D+  F      F+G   I    + PL     
Sbjct: 62  --ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGY 98

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 20/109 (18%)

Query: 170 IKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLM--LSIP 223
           + V V++  +LA++   T DP+  + L +     T +T+V K   NP ++E+    L+I 
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 224 ENIP--------------PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258
            +                 L+V ++     + DDF+G+  I +Q L  A
Sbjct: 61  FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQA 109

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 16/92 (17%)

Query: 168 GLIKVNVVKGTNL-AVRDVMTSDPYV---ILALGHQTV--KTRVIKSNLNPVWNESLMLS 221
           G + V V +  NL A++   TSD +V   +L    +    KT V+K ++NPVWN + +  
Sbjct: 27  GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY- 85

Query: 222 IPENIPP-------LKVLVYDKDTFTTDDFMG 246
             + + P       L++ V+D D  +++DF+G
Sbjct: 86  --DGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 172 VNVVKGTNLAVR--DVMTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
           V+++K  NL  R  DV   DP+V + L     ++++++V +   NP ++E+ +  +    
Sbjct: 18  VSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77

Query: 227 PP---LKVLVYDKDTFTTDDFMG 246
                L++ VYD D F+    +G
Sbjct: 78  LQRRTLRLSVYDVDRFSRHCIIG 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 188 SDPYVILALGHQTVKTRVIKSNLNPVWNESL---MLSIPENIPPLKVLVYDKDTFTTDDF 244
            D    +       KTRV+++ LNPVWNE+    +   P+    L+++V D +    +  
Sbjct: 15  GDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74

Query: 245 MGDAEIDIQPLVTAARA 261
           +G A + +Q LV+    
Sbjct: 75  IGSATVSLQDLVSEGLL 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 168 GLIKVNVVKGTNLAVRDVMT-SDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 221
           G + V++++   L   D+   SDP+V + L H     +T KT  ++  ++P +NES    
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 222 IP----ENIPPLKVLVYDKDTFTTDDFMG 246
           +P    EN+  L   VY  +  +++DF+G
Sbjct: 74  VPQEELENV-SLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 167 VGLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRV-IKSNLNPVWNESLMLSIPE 224
           VG + + VV+   L     +T  DPY  + +GH   +T        NP WN+++  ++PE
Sbjct: 1   VGRLSITVVQA-KLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE 59

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 269
            +  + + ++D+  FT D+ +    I I   V      +   S+S
Sbjct: 60  GVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLS 104

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 35/116 (30%)

Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILA-------------------------LGHQTVK 202
           ++KV V++   L  +DV   SDPY +L                                K
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 203 ----TRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 253
               T V    LNPVWNE+    + + +   L + ++D D    DDF+G   I ++
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 187 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFT 240
           T+D YVI+ LG +   T V +   +PVW E     +P       N   L++ V  ++   
Sbjct: 19  TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78

Query: 241 TDDFMGDAEIDI 252
            D F+G   I +
Sbjct: 79  LDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 189 DPYV-ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVL---VYDKDTFTTDDF 244
           DPYV +   G    KT V K   NP WNE   +     + P   L   V+   T   D  
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV----LVTPQSTLEFKVWSHHTLKADVL 78

Query: 245 MGDAEIDIQPL 255
           +G+A +D+  +
Sbjct: 79  LGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 189 DPYVILALGHQTVKTRVIKSNLNPVWNE--SLMLSIPENIPPLKVLVYDKDT 238
            PYV L +G  T K++V +   NPVW E  + ++  PEN   L++ V D  T
Sbjct: 22  SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN-QELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 172 VNVVKGTNL---AVRDVMTSDPYVILALGHQTVK-----TRVIKSNLNPVWNESLMLSIP 223
           V V+K  NL    ++ ++  D  V + L HQ  K     T+  K  +NPVWNE +M  +P
Sbjct: 19  VVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELP 78

Query: 224 ENI 226
             +
Sbjct: 79  SEL 81

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 171 KVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVK--TRVIKSNLNPVWNESLM-LSI- 222
              +++   L   D    SDPYV L L     +  K  T+ +    NP +NE+L    I 
Sbjct: 18  HCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGIT 77

Query: 223 PENI--PPLKVLVYDKDTFTTDDFMGDAEI 250
            E+I    L++LV D+D F  +DF+G+  I
Sbjct: 78  EEDIQRKTLRLLVLDEDRF-GNDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 171 KVNVVKGTNLAVRDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPP- 228
           ++ +++  NL  +   T DPY  ++L    V +T+ ++  LNP W E  +   P   PP 
Sbjct: 3   RLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP---PPD 56

Query: 229 -----LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
                L     DK +   D  +G   +    L
Sbjct: 57  VTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL 88

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 198 HQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVLVYDKDTF-TTDDFMGD 247
            Q+ KT  IK   +P +NES  L+I               LK  VY K  F  +D  +G 
Sbjct: 40  PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGT 99

Query: 248 AEIDIQPLVTAARACE 263
           A++ ++PL T    CE
Sbjct: 100 AQVKLEPLET---KCE 112

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 15/73 (20%)

Query: 187 TSDPYVILALGH-------QTVKTRVIKSN-LNPVWNESLMLSIPENIPPL---KVLVYD 235
             DPYV + + H          KT+V+K+N  NPVWNE+    +   +P L   + +VYD
Sbjct: 24  IVDPYVEVEI-HGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV--TVPELAFLRFVVYD 80

Query: 236 KDTFTTDDFMGDA 248
           +D+   DDF+G A
Sbjct: 81  EDSG-DDDFLGQA 92

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 19/200 (9%)

Query: 61  EAYTPGNLKKPS-PNSFIDERSDFIRRKYEKLEFFNFDEQ---ALLCPYPAPHRRSSSSS 116
           E Y+ G LK  + P+  +        RK   ++   FD Q    +          S+   
Sbjct: 611 EVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEG------STLPD 664

Query: 117 TSSSSHDKKH-YEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVV 175
               + D    +  +  + RI I   N W        N+  ++S       +G I+V+V 
Sbjct: 665 LIDRTLDTFLVFPLRNPKGRIFIT--NYW----KPIYNAGGSSSKTVYDTPIGAIRVSVR 718

Query: 176 KGTNLAVRD-VMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLV 233
           K  +L        SDPY  + + +    +T    S LNP+WNE L + +      L +  
Sbjct: 719 KANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLEC 778

Query: 234 YDKDTFTTDDFMGDAEIDIQ 253
            D +    D  +G+  I++ 
Sbjct: 779 MDYEESGDDRNLGEVNINVS 798

Length = 1227

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 171 KVNVVKGTNLAVRDVMTSDP------YVILALGHQTVKTRVIKS-NLNPVWNESLM 219
           +V V     +  +D++ SD       +V   LG+Q ++TR  ++ N NP WNE LM
Sbjct: 3   RVTV-----IEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELM 53

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 169 LIKVNVVKGTNLAVRDVMTSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENI 226
           L+K     G + A     +S+PY +L +    Q  ++   K+  NP W+E  +  +  N 
Sbjct: 2   LVKNIKANGLSEAAG---SSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEI 250
             L   VYD    +   F+G A +
Sbjct: 59  KELLFEVYDNGKKSDSKFLGLAIV 82

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 167 VGLIKVNVVKGTNLAVRDV--MTSDPYVILAL----GHQTVKTRVIKSN-LNPVWNESLM 219
              + V+V +  NLA  D     S+PYV   L      Q+ +   IK N  NPV+NE+L 
Sbjct: 14  TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLK 73

Query: 220 LSIPEN---IPPLKVLVYDKDTFTTDDFMGDAEI 250
            SI  +      L++ V+  D F  + F+G+ EI
Sbjct: 74  YSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 187 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYD 235
           ++D Y +   G + V+TR ++ + NP WNE     + +    L V V+D
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFD 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 12  FICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKP 71
           FIC+ CSGIHR       +V SV + ++T++ V+AL + GGN    + Y        ++ 
Sbjct: 44  FICMTCSGIHREF---THRVKSVSMSKFTSQDVEAL-QNGGNQRAREIYLKDWDQQRQRL 99

Query: 72  SPNSFIDERSDFIRRKY 88
             NS +D+  +FI+  Y
Sbjct: 100 PDNSKVDKIREFIKDIY 116

Length = 705

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 115 SSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNV 174
           +S  +    +    ++  + RI         R  S    S++A   V+  +F G+  + +
Sbjct: 5   NSREAKESRRSKLRQKLQKFRIRRR-HLRCSRGSSSGSVSQRA---VSAEDFSGIALLTL 60

Query: 175 VKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPL-KVLV 233
           V G  +  +D         ++ G QT +T    S   PVWN    L + +N P L ++ V
Sbjct: 61  V-GAEMKFKDKW----LACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISV 115

Query: 234 YDKDTFTTDDFMGDAEIDIQPLVT 257
           ++ +  + +  +G  E+D+   VT
Sbjct: 116 FETNRLSKNTLVGYCELDLFDFVT 139

Length = 644

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 166 FVGLIKVNVV-----KGTNLAVRDVMTS------DPYVIL-----ALGHQTVKTRVIKSN 209
           F G +K+ +      K T+ + R  +        DPYV +      +G  + K +     
Sbjct: 2   FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK----T 57

Query: 210 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257
            +PVWNE     +  N   L++ V+       DDF+ +  I  + L+ 
Sbjct: 58  NSPVWNEEFTTEV-HNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQ 104

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 188 SDPYV---ILALGHQTV--KTRVIKSNLNPVWNESLMLSIPENIPPLKVL---VYDKDTF 239
            DPYV   +L    ++   KT V K NLNPV++E+    +       + L   V +  +F
Sbjct: 37  PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96

Query: 240 --TTDDFMGDAEIDIQPLVTAAR 260
                  +G   ID+  L  +  
Sbjct: 97  LSREKKLLGQVLIDLSDLDLSKG 119

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 170 IKVNVVKGTNLAVRD--VMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENI 226
           +K+ + +  NL  R       D Y  + L  + V +T+ ++ +L P + E     IP   
Sbjct: 2   LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF 61

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEI 250
             L   +YD+D    D  +G   I
Sbjct: 62  RHLSFYIYDRDVLRRDSVIGKVAI 85

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG0703	287	consensus Predicted GTPase-activating protein [Sig	100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	99.96
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	99.95
PLN03131	705	hypothetical protein; Provisional	99.95
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.94
KOG0704	386	consensus ADP-ribosylation factor GTPase activator	99.9
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.9
KOG0706	454	consensus Predicted GTPase-activating protein [Sig	99.89
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.87
KOG0521	785	consensus Putative GTPase activating proteins (GAP	99.85
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.83
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.83
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.8
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.79
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.78
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.78
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.78
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.77
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.75
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.75
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.75
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.75
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.75
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.74
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.74
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.74
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.74
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.73
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.73
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.72
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.72
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.71
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.7
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.7
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.7
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.7
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.7
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.7
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.69
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.69
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.69
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.69
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.69
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.69
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.68
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.68
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.68
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.67
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.67
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.67
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.67
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.66
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.66
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.66
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.65
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.65
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.65
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.65
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.65
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.65
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.65
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.64
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.64
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.64
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.63
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.63
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.63
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.62
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.61
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.59
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.59
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.59
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.58
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.58
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.57
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.57
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.57
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.53
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.53
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.51
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.5
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.5
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.45
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.45
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.44
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.43
PLN03008	868	Phospholipase D delta	99.42
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.41
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.37
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.33
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.31
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.24
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.17
KOG0702	524	consensus Predicted GTPase-activating protein [Sig	99.16
PLN02223	537	phosphoinositide phospholipase C	99.06
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.04
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.94
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.93
PLN02952	599	phosphoinositide phospholipase C	98.91
PLN02230	598	phosphoinositide phospholipase C 4	98.88
PLN02222	581	phosphoinositide phospholipase C 2	98.85
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.82
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.81
PLN02228	567	Phosphoinositide phospholipase C	98.78
PLN02270	808	phospholipase D alpha	98.77
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.76
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.75
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.7
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.34
PLN02964	644	phosphatidylserine decarboxylase	98.25
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.14
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.13
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.08
PLN02352	758	phospholipase D epsilon	97.89
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	97.82
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.78
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.7
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.62
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.44
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.34
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.24
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.13
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.8
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.1
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.03
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.52
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.46
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.4
PF15627	156	CEP76-C2: CEP76 C2 domain	94.86
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.76
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.98
KOG1452	442	consensus Predicted Rho GTPase-activating protein	93.68
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.72
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	92.26
KOG1327	529	consensus Copine [Signal transduction mechanisms]	92.01
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	91.17
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	90.45
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	89.36
KOG0521	785	consensus Putative GTPase activating proteins (GAP	88.6
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	88.35
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	87.89
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	85.59
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.35

>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-38  Score=267.04  Aligned_cols=92  Identities=52%  Similarity=0.903  Sum_probs=89.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||.|+|||||++||||||+||+||||||||+||.|++|+|+.|+.+ ||.+||.+||+.+|..+.+|.+++   .+|
T Consensus        36 P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-GN~~an~~~ea~~p~~~~~p~~d~---~~e  111 (287)
T KOG0703|consen   36 PRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-GNAKANSYYEAKLPDPFRRPGPDD---LVE  111 (287)
T ss_pred             CCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-cchhhhhhccccCCccccCCChHH---HHH
Confidence            8999999999999999999999999999999999999999999999999 599999999999999999999876   899


Q ss_pred             HHHHHHHhcCccccCC
Q 023876           82 DFIRRKYEKLEFFNFD   97 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~   97 (276)
                      .|||+|||.++|+.++
T Consensus       112 ~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen  112 QFIRDKYERKKFLDPE  127 (287)
T ss_pred             HHHHHHHhhhhhccch
Confidence            9999999999999876

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=1.1e-34  Score=218.97  Aligned_cols=95  Identities=43%  Similarity=0.671  Sum_probs=87.8

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++|||+||+||+|||+||||+||+|++++|++|+. |||.++|++||++++....+|.+.+....++
T Consensus        14 p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~~-~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~   92 (112)
T smart00105       14 PTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQK-GGNENANSIWESNLDDFSLKPPDSDDQQKYE   92 (112)
T ss_pred             CCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHHH-hhhHHHHHHHHhhCCccccCCCCCchHHHHH
Confidence            899999999999999999999999999999999999999999999965 7999999999999998755666666788999


Q ss_pred             HHHHHHHhcCccccCC
Q 023876           82 DFIRRKYEKLEFFNFD   97 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~   97 (276)
                      +||++||++++|+..+
T Consensus        93 ~fI~~KY~~k~f~~~~  108 (112)
T smart00105       93 SFIAAKYEEKLFVPPE  108 (112)
T ss_pred             HHHHHHHHhhhccccc
Confidence            9999999999999743

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=5.2e-34  Score=216.78  Aligned_cols=93  Identities=45%  Similarity=0.809  Sum_probs=78.1

Q ss_pred             CCCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHH
Q 023876            1 MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER   80 (276)
Q Consensus         1 ~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~   80 (276)
                      .|+|||+|||||||++|||+||+||+|+|+||||+||+|+++||+.|+. |||..+|++||++. +...+|.++++.+.+
T Consensus        23 ~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~~e~~~-~~~~~~~~~~~~~~~  100 (116)
T PF01412_consen   23 NPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSIWEANS-PPPKKPPPSSDQEKR  100 (116)
T ss_dssp             S--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHHHTTTS-TTTTTHCTTSHHHHH
T ss_pred             CCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHHHHcCC-CCCCCCCCCCcHHHH
Confidence            3899999999999999999999999999999999999999999999976 59999999999994 344688888999999


Q ss_pred             HHHHHHHHhcCcccc
Q 023876           81 SDFIRRKYEKLEFFN   95 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~   95 (276)
                      ++||++||++++|+.
T Consensus       101 ~~fI~~KY~~k~f~~  115 (116)
T PF01412_consen  101 EQFIRAKYVEKAFIS  115 (116)
T ss_dssp             HHHHHHHHTTHTTS-
T ss_pred             HHHHHHHHHhhhhcc
Confidence            999999999999985

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.9e-30  Score=226.22  Aligned_cols=95  Identities=40%  Similarity=0.664  Sum_probs=86.6

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC-CCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL-KKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~-~~p~~~~~~~~~   80 (276)
                      |+|||+|||||||++||||||+||+|||+||||+||.|+++||++|.. |||..||.||+.+.-... .+.....+...+
T Consensus        31 P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~  109 (319)
T COG5347          31 PTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNANRFYEKNLLDQLLLPIKAKYDSSVA  109 (319)
T ss_pred             CceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhhhhHhccCCCcccccccccccCHHHH
Confidence            999999999999999999999999999999999999999999999976 899999999999986532 355567778899


Q ss_pred             HHHHHHHHhcCccccCC
Q 023876           81 SDFIRRKYEKLEFFNFD   97 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~~   97 (276)
                      ++||+.||+.++|+..+
T Consensus       110 ~~y~~~ky~~~~~~~~~  126 (319)
T COG5347         110 KKYIRKKYELKKFIDDS  126 (319)
T ss_pred             HHHHHHHHHhhhccccc
Confidence            99999999999999853

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=99.95  E-value=3.7e-28  Score=219.81  Aligned_cols=93  Identities=25%  Similarity=0.458  Sum_probs=83.7

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++|+||||.||   +|||||+||+|+++||++|+. |||.+||++||++|+....++...++.+.++
T Consensus        34 P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLDkWT~EEVe~Mk~-gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr  109 (648)
T PLN03119         34 PQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMSKFTSKEVEVLQN-GGNQRAREIYLKNWDHQRQRLPENSNAERVR  109 (648)
T ss_pred             CCceeeccceEEeccchhhhccCC---ceeeccccCCCCHHHHHHHHH-hchHHHHHHHHhhcccccCCCCCCccHHHHH
Confidence            899999999999999999999998   699999999999999999976 6999999999999987654555566677888


Q ss_pred             HHHHHHHhcCccccCCc
Q 023876           82 DFIRRKYEKLEFFNFDE   98 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~~   98 (276)
                      +|||+||++|+|+....
T Consensus       110 ~FIR~KYVeKRF~~~~~  126 (648)
T PLN03119        110 EFIKNVYVQKKYAGAND  126 (648)
T ss_pred             HHHHHHHhhhhccCcCC
Confidence            99999999999998543

>PLN03131 hypothetical protein; Provisional

Probab=99.95  E-value=2.8e-28  Score=222.37  Aligned_cols=92  Identities=28%  Similarity=0.463  Sum_probs=82.8

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++|+||||.||   +|||||+||+|+++||+.|+. |||.+||++||++|+....++.++++.+.++
T Consensus        34 P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD~WtdeEV~~Mk~-gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr  109 (705)
T PLN03131         34 PQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMSKFTSQDVEALQN-GGNQRAREIYLKDWDQQRQRLPDNSKVDKIR  109 (705)
T ss_pred             CCeeEeccceEEchhchhhhcccC---cccccccCCCCCHHHHHHHHH-hccHHHHHHHHhhcccccCCCCCCccHHHHH
Confidence            899999999999999999999998   699999999999999999975 7999999999999987644444566777889


Q ss_pred             HHHHHHHhcCccccCC
Q 023876           82 DFIRRKYEKLEFFNFD   97 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~   97 (276)
                      +|||+||++|+|+...
T Consensus       110 ~FIR~KYVeKRFa~~~  125 (705)
T PLN03131        110 EFIKDIYVDKKYAGGK  125 (705)
T ss_pred             HHHHHHHhhhhhhcCC
Confidence            9999999999999854

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-27  Score=214.89  Aligned_cols=92  Identities=42%  Similarity=0.788  Sum_probs=88.1

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |.|||+|+|+++|++|+||||.||+|+|+|+|+.||.|..|-+..|..+ ||..||.+||...... .||.|++..++||
T Consensus       524 ~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN~vWE~~~~G~-~KPs~~s~REEkE  601 (749)
T KOG0705|consen  524 PKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLANSVWEGSSQGQ-TKPSPDSSREEKE  601 (749)
T ss_pred             cccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHHHHhhhhccCC-cCCCccccHHHHH
Confidence            8999999999999999999999999999999999999999999999988 8999999999966544 8999999999999


Q ss_pred             HHHHHHHhcCcccc
Q 023876           82 DFIRRKYEKLEFFN   95 (276)
Q Consensus        82 ~fI~~KY~~~~f~~   95 (276)
                      +||++||+++.|..
T Consensus       602 rwIr~KYeqklFLa  615 (749)
T KOG0705|consen  602 RWIRAKYEQKLFLA  615 (749)
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999999997

>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.90  E-value=1.6e-24  Score=185.60  Aligned_cols=92  Identities=33%  Similarity=0.454  Sum_probs=72.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC-----CCCCCCCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL-----KKPSPNSF   76 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~-----~~p~~~~~   76 (276)
                      |+|||++||||||.+|||+||+||+|||.||||+||+|.+.||+.|. .|||.+++.|++.+..-.-     .|.+.. .
T Consensus        30 PQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMe-aGGN~~~~eFL~s~~~~~e~~~i~eKYns~-a  107 (386)
T KOG0704|consen   30 PQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKME-AGGNERFREFLSSQGIYKETWPIREKYNSR-A  107 (386)
T ss_pred             CCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHH-hccchhHHHHHhhCccccccccHHHhhccH-H
Confidence            99999999999999999999999999999999999999999999995 5999999999987653110     111111 1


Q ss_pred             HHHHHHHHHHHHhcCcccc
Q 023876           77 IDERSDFIRRKYEKLEFFN   95 (276)
Q Consensus        77 ~~~~~~fI~~KY~~~~f~~   95 (276)
                      ...-++=|.+--+.+.|-+
T Consensus       108 Aa~yRdki~~laegr~w~d  126 (386)
T KOG0704|consen  108 AALYRDKIAALAEGREWND  126 (386)
T ss_pred             HHHHHHHHHHHhcCCcccc
Confidence            1222355777777777833

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.90  E-value=8.1e-24  Score=182.63  Aligned_cols=96  Identities=31%  Similarity=0.436  Sum_probs=81.8

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC--CCCCCCCCHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL--KKPSPNSFIDE   79 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~--~~p~~~~~~~~   79 (276)
                      |+|||+|||||||++|+|+||.||+||++|||++||.|++++|++|. .|||.+||.||+.+.-...  .+-.-++....
T Consensus        33 PtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk-~GGN~rA~~fF~qhG~~~~~~~~~KY~S~aA~  111 (395)
T PLN03114         33 PTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI-YGGNNRAQVFFKQYGWSDGGKTEAKYTSRAAD  111 (395)
T ss_pred             CCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHH-HhcCHHHHHHHHHcCCCCCCCcccccCCHHHH
Confidence            89999999999999999999999999999999999999999999995 5899999999998753321  12233466677


Q ss_pred             HHHHHHHHHhcCccccCCc
Q 023876           80 RSDFIRRKYEKLEFFNFDE   98 (276)
Q Consensus        80 ~~~fI~~KY~~~~f~~~~~   98 (276)
                      +++-+.+|++.+.+.....
T Consensus       112 ~Yre~L~keVa~~~a~~~~  130 (395)
T PLN03114        112 LYKQILAKEVAKSKAEEEL  130 (395)
T ss_pred             HHHHHHHHHHHHhhhcccc
Confidence            8888999999999986443

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.89  E-value=6.5e-24  Score=187.67  Aligned_cols=63  Identities=40%  Similarity=0.722  Sum_probs=60.8

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP   65 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~   65 (276)
                      |+|+|++||||||++||++||+|||||++|||..||.|+.+||+.| .+|||.+|+.|++.|.-
T Consensus        34 PtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M-~~GGN~nA~~FFkqhg~   96 (454)
T KOG0706|consen   34 PTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRM-QVGGNANARVFFKQHGC   96 (454)
T ss_pred             CCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHh-hhcCchhHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999 58999999999999864

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.87  E-value=3.1e-22  Score=157.10  Aligned_cols=99  Identities=54%  Similarity=0.916  Sum_probs=94.3

Q ss_pred             cceeeEEEEEEEeeecCCCCCC-CCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCC
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  242 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d  242 (276)
                      .++.|.|.|+|.+|.+|..+|+ +++||||++.+|+++.+|+++.+++||+|||.|.|.+.+...+|+++|||+|.++.|
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence            5678999999999999999999 599999999999999999999999999999999999999899999999999999999


Q ss_pred             ceeEEEEEeCcccccccccc
Q 023876          243 DFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       243 ~~lG~~~l~l~~l~~~~~~~  262 (276)
                      |+||.++|+|.+++.+....
T Consensus        82 D~mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             cccceeeeccHHHHHHhhhh
Confidence            99999999999999877665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-22  Score=195.86  Aligned_cols=97  Identities=42%  Similarity=0.668  Sum_probs=90.7

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC-CCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~-~~~p~~~~~~~~~   80 (276)
                      |+|+|+|+||.+||+|+|+||+||+|||+|+|++||.|.++.+..|+++ ||..+|.+||+.+++. ..+|.+..+...|
T Consensus       437 ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~e~~l~~~~~~~~~~~~~~~~r  515 (785)
T KOG0521|consen  437 PTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIYEALLPSYDSSKPTASSSRQAR  515 (785)
T ss_pred             CchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-CcchhhhhhhcccccccccCCCCccchhhh
Confidence            8999999999999999999999999999999999999999999999876 9999999999999864 5799998889999


Q ss_pred             HHHHHHHHhcCccccCCcc
Q 023876           81 SDFIRRKYEKLEFFNFDEQ   99 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~~~~   99 (276)
                      +.||++||++++|....++
T Consensus       516 ~~~i~~kyve~~F~~k~~~  534 (785)
T KOG0521|consen  516 EAWIKAKYVERRFSVKEPQ  534 (785)
T ss_pred             hHhhhcccceeeEeecccc
Confidence            9999999999999986554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.83  E-value=1e-21  Score=175.23  Aligned_cols=93  Identities=29%  Similarity=0.588  Sum_probs=85.3

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCC------CCCCCCCCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG------NLKKPSPNS   75 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~------~~~~p~~~~   75 (276)
                      |.|||+|-|+|||.+|+.+||+||.|||.||++.-..|.++.|++...+ .|..||.|||+.+-+      +..||+|.+
T Consensus        19 p~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld~st~~sg~rk~~pqD   97 (669)
T KOG0818|consen   19 PSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLDPATIMSGRRKANPQD   97 (669)
T ss_pred             CcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccCchhhhcccCCCCCcC
Confidence            8999999999999999999999999999999999999999999988776 788899999999843      457899977


Q ss_pred             CHH-HHHHHHHHHHhcCcccc
Q 023876           76 FID-ERSDFIRRKYEKLEFFN   95 (276)
Q Consensus        76 ~~~-~~~~fI~~KY~~~~f~~   95 (276)
                      ... .|++|||+||+...|..
T Consensus        98 ~~Hp~K~eFIkaKy~~LtFv~  118 (669)
T KOG0818|consen   98 KVHPNKAEFIRAKYQMLAFVH  118 (669)
T ss_pred             CCCccHHHHHHHHHHheeeec
Confidence            665 99999999999999996

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.83  E-value=4.6e-20  Score=139.40  Aligned_cols=105  Identities=17%  Similarity=0.285  Sum_probs=88.2

Q ss_pred             hhhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC----eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~----~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ..+..|....+.|+|+|++|++|+ .+ +.+||||++++..    .+.+|++.++|+||+|||+|.|.++.   ....|.
T Consensus         4 ~fsL~Y~~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~   81 (118)
T cd08677           4 HYSLSYDKQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLT   81 (118)
T ss_pred             EEEEEEcCcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEE
Confidence            345678888999999999999998 22 3689999999942    46799999999999999999999865   456799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      |+|||+|+++++++||++.+++.++..+.....|
T Consensus        82 ~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W  115 (118)
T cd08677          82 LTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW  115 (118)
T ss_pred             EEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence            9999999999999999999999987544433333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.80  E-value=6.3e-19  Score=134.90  Aligned_cols=102  Identities=21%  Similarity=0.391  Sum_probs=88.8

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      |.|.|+|++|++++..+.+.+||||++.+++++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG   81 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA   81 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence            68999999999988877559999999999999999999876 79999999999999765578999999999999999999


Q ss_pred             EEEEeCc-cccccccccCCCccCC
Q 023876          247 DAEIDIQ-PLVTAARACETPISMS  269 (276)
Q Consensus       247 ~~~l~l~-~l~~~~~~~~~~~~~~  269 (276)
                      .+.++|. .+..+.....|..+.+
T Consensus        82 ~~~i~l~~~~~~g~~~~~W~~L~~  105 (121)
T cd04016          82 WTHITIPESVFNGETLDDWYSLSG  105 (121)
T ss_pred             EEEEECchhccCCCCccccEeCcC
Confidence            9999996 5666665666665543

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=9.8e-19  Score=134.70  Aligned_cols=100  Identities=22%  Similarity=0.394  Sum_probs=88.0

Q ss_pred             EEEEEEEeeec---CCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC----
Q 023876          169 LIKVNVVKGTN---LAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT----  240 (276)
Q Consensus       169 ~L~V~v~~a~~---L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~----  240 (276)
                      +|.|+|++|++   |+.++.. .+||||++.++.++.+|+++++++||+|||+|.|.+......|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999   7887876 999999999999999999999999999999999999776678999999998874    


Q ss_pred             --CCceeEEEEEeCccccccccccCCCccC
Q 023876          241 --TDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       241 --~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                        .|++||++.++|+.+..+.....+..+.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~  110 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLL  110 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence              8999999999999998776655554443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.78  E-value=1.7e-18  Score=130.22  Aligned_cols=94  Identities=29%  Similarity=0.506  Sum_probs=83.6

Q ss_pred             eEEEEEEEeeecCCCCCCC-----CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM-----TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT  240 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-----~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~~  240 (276)
                      |+|.|+|++|++|+..+..     .+||||++.++.+.++|+++++++||+|||.|.|.+..  ....|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999987532     48999999999999999999999999999999999865  3347999999999999


Q ss_pred             CCceeEEEEEeCccccccccc
Q 023876          241 TDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      .|++||++.++|++|..+...
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCCC
Confidence            999999999999999876654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.78  E-value=1.7e-18  Score=133.22  Aligned_cols=96  Identities=29%  Similarity=0.423  Sum_probs=83.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEe-eC---CCCcEEEEEEEcC
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDKD  237 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~-~~---~~~~L~i~v~d~~  237 (276)
                      .+.|.|+|++|++|+..+...+||||++++.     ..+.+|++++++.||+|||+|.|.+ +.   ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            6889999999999999993389999999995     3468999999999999999999987 32   4568999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                      .++++++||++.++|.++.......
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~  116 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETE  116 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCcc
Confidence            9999999999999999988654433

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.78  E-value=2.1e-18  Score=136.17  Aligned_cols=96  Identities=67%  Similarity=1.069  Sum_probs=88.6

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      .|.|.|+|++|++|+..+...+||||++.+++++.+|++++++.||+|||.|.|.+......|+|+|||++.++.|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            37899999999999988877899999999999999999999999999999999999877788999999999999999999


Q ss_pred             EEEEeCcccccccccc
Q 023876          247 DAEIDIQPLVTAARAC  262 (276)
Q Consensus       247 ~~~l~l~~l~~~~~~~  262 (276)
                      ++.+++.++..+....
T Consensus        81 ~a~i~l~~l~~~~~~~   96 (145)
T cd04038          81 EAEIDLEPLVEAAKLD   96 (145)
T ss_pred             EEEEEHHHhhhhhhhh
Confidence            9999999998766554

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.77  E-value=2.7e-18  Score=132.86  Aligned_cols=98  Identities=27%  Similarity=0.468  Sum_probs=84.9

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC------CCCcEEEEEEEcCCCCCC
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFTTD  242 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~------~~~~L~i~v~d~~~~~~d  242 (276)
                      |.|+|++|++|+..+.. .+||||++.++.++++|+++++++||+|||.|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999988876 89999999999999999999999999999999999865      356799999999999999


Q ss_pred             ceeEEEEEeCcccc--ccccccCCCcc
Q 023876          243 DFMGDAEIDIQPLV--TAARACETPIS  267 (276)
Q Consensus       243 ~~lG~~~l~l~~l~--~~~~~~~~~~~  267 (276)
                      ++||++.++|+++.  .+.....|..+
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L  107 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKL  107 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEEC
Confidence            99999999999987  33333444444

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.1e-17  Score=127.69  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      ++.|+|+|++|++|+..+  ..||||++.+++++.+|++.+. .||.|||.|.|.+......|.|+|||++.+ .|++||
T Consensus         1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            468999999999997655  4699999999999999999988 499999999999987666799999999865 899999


Q ss_pred             EEEEeCcccccccc
Q 023876          247 DAEIDIQPLVTAAR  260 (276)
Q Consensus       247 ~~~l~l~~l~~~~~  260 (276)
                      ++.++|.++..+..
T Consensus        77 ~v~i~L~~v~~~~~   90 (127)
T cd08394          77 TVWIPLSTIRQSNE   90 (127)
T ss_pred             EEEEEhHHcccCCC
Confidence            99999999886544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.75  E-value=5.8e-18  Score=130.78  Aligned_cols=106  Identities=27%  Similarity=0.368  Sum_probs=89.1

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPP  228 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~  228 (276)
                      ....|....+.|.|+|++|++|+.++..  .+||||++++.     ..+.+|+++++++||+|||.|.|.+..   ....
T Consensus         6 ~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~   85 (125)
T cd08393           6 FALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRV   85 (125)
T ss_pred             EEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCE
Confidence            3456667778999999999999998853  89999999993     245799999999999999999999864   3468


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      |.|+|||++.++++++||++.++|.++........|
T Consensus        86 L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W  121 (125)
T cd08393          86 LNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTW  121 (125)
T ss_pred             EEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcce
Confidence            999999999999999999999999998655443334

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.75  E-value=7.3e-18  Score=130.19  Aligned_cols=107  Identities=28%  Similarity=0.359  Sum_probs=90.5

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPP  228 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~  228 (276)
                      ....|....+.|.|+|++|++|+..+.  +.+||||++++.     ..+.+|++++++.||+|||+|.|.+..   ....
T Consensus         6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~   85 (125)
T cd04029           6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRT   85 (125)
T ss_pred             EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCE
Confidence            345677888999999999999998765  379999999983     235789999999999999999999864   3467


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      |.|+|||++.++++++||++.++|..+........|.
T Consensus        86 L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  122 (125)
T cd04029          86 LQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECL  122 (125)
T ss_pred             EEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEE
Confidence            9999999999999999999999999987665555444

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.75  E-value=5.3e-19  Score=166.27  Aligned_cols=96  Identities=35%  Similarity=0.558  Sum_probs=91.7

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCC--CCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDE   79 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~--w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~   79 (276)
                      |.|||+|++|.||-.|+|-||+||..+|+|+|++||.  |+.+-++++..+ ||.++|.||-++++++ ...+|+++...
T Consensus       309 PdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~an~Fwa~nl~~~-e~lh~dssp~~  386 (1186)
T KOG1117|consen  309 PDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPRANRFWAGNLPPN-EHLHPDSSPST  386 (1186)
T ss_pred             CcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcccccccccCCCCc-cccCCCCCcch
Confidence            8999999999999999999999999999999999996  999999999988 8999999999999988 78899999999


Q ss_pred             HHHHHHHHHhcCccccCCcc
Q 023876           80 RSDFIRRKYEKLEFFNFDEQ   99 (276)
Q Consensus        80 ~~~fI~~KY~~~~f~~~~~~   99 (276)
                      |.+||++||.+.+|....+.
T Consensus       387 r~~fi~~Kykeg~fRk~~~~  406 (1186)
T KOG1117|consen  387 RRQFIKEKYKEGKFRKEHPV  406 (1186)
T ss_pred             hhhHHHHHhhcccccccccc
Confidence            99999999999999987765

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=1.3e-17  Score=131.46  Aligned_cols=113  Identities=21%  Similarity=0.320  Sum_probs=91.2

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeCCCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPENIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~~~~  227 (276)
                      +.+.....|  ..+.|.|+|++|++|+..+ .. .+||||++++  ++   .+.+|+++++++||+|||+|.|.+.....
T Consensus        18 G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~   95 (146)
T cd04028          18 GDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGK   95 (146)
T ss_pred             ceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCC
Confidence            344433444  3689999999999998864 33 7899999999  32   36799999999999999999999986677


Q ss_pred             cEEEEEE-EcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876          228 PLKVLVY-DKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       228 ~L~i~v~-d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      .|.|+|| |++.++++++||++.|+|+.+..+.....|..++.
T Consensus        96 ~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028          96 TLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence            8999999 68888899999999999999866655555555543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=1.9e-17  Score=126.08  Aligned_cols=100  Identities=33%  Similarity=0.508  Sum_probs=88.4

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCceeE
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      +|+|+|++|++|+..+.. .+||||+++++++..+|++++++.||.|||.|.|.+... ...|.|+|||++.++++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            378999999999998876 899999999999999999999999999999999998763 678999999999999999999


Q ss_pred             EEEEeCccccccccccCCCccC
Q 023876          247 DAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       247 ~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      ++.++|+++..+.....|..+.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~  102 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELE  102 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEcc
Confidence            9999999988766655554443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=1.9e-17  Score=126.49  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=83.7

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE-C----C--eeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G----H--QTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~----~--~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~  237 (276)
                      .|+|+|++|++|+..+.+.+||||+|++ |    .  ++.+|+++++++||+|||.|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            3899999999999888668999999997 3    2  356899999999999999999999742    245899999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ..+.+++||++.++|.++..+.....|..+
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L  110 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLPL  110 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence            888899999999999999977765555444

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.74  E-value=1.6e-17  Score=128.05  Aligned_cols=110  Identities=25%  Similarity=0.375  Sum_probs=92.1

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL  229 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L  229 (276)
                      +.....|....+.|.|+|++|++|+..+.. .+||||++.+.   ....+|++++++.||+|||.|.|.+..   ....|
T Consensus         5 l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l   84 (124)
T cd08385           5 LQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL   84 (124)
T ss_pred             EEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence            334456777788999999999999998876 89999999983   346799999999999999999999864   34689


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI  266 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~  266 (276)
                      .|+|||++.++.+++||++.++|+++..+.....|..
T Consensus        85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~  121 (124)
T cd08385          85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRD  121 (124)
T ss_pred             EEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEE
Confidence            9999999999999999999999999876555554543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.74  E-value=1.6e-17  Score=128.07  Aligned_cols=110  Identities=26%  Similarity=0.443  Sum_probs=93.1

Q ss_pred             hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      .....|....+.|.|+|++|++|+..+.. .+||||++.+.   ....+|++++++.||+|||.|.|.+..   ....|.
T Consensus         6 ~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~   85 (124)
T cd08387           6 HFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLE   85 (124)
T ss_pred             EEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEE
Confidence            33456677789999999999999998876 89999999983   356899999999999999999999865   246899


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      |+|||++.++++++||++.++|+++..+.....|..+
T Consensus        86 i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          86 VLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             EEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            9999999999999999999999999866655555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=3.4e-17  Score=128.20  Aligned_cols=94  Identities=33%  Similarity=0.623  Sum_probs=86.1

Q ss_pred             cceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCC
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTT  241 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~  241 (276)
                      ...+|.|.|+|++|++|+..+.. .+||||++.++.+..+|++++++.||.|||.|.|.+.. ....|.|+|||++.++.
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            34568999999999999998876 89999999999999999999999999999999999865 45679999999999999


Q ss_pred             CceeEEEEEeCccccc
Q 023876          242 DDFMGDAEIDIQPLVT  257 (276)
Q Consensus       242 d~~lG~~~l~l~~l~~  257 (276)
                      |++||++.++|.++..
T Consensus        91 d~~lG~~~i~l~~l~~  106 (136)
T cd08375          91 DDFLGRTEIRVADILK  106 (136)
T ss_pred             CCeeEEEEEEHHHhcc
Confidence            9999999999999886

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.73  E-value=2.5e-17  Score=126.72  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=87.4

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---C---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---G---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL  229 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L  229 (276)
                      +..|....+.|.|+|++|++|+.++.. .+||||++++   .   ..+.+|++++++.||+|||+|.|.+..   ....|
T Consensus         6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L   85 (124)
T cd08680           6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL   85 (124)
T ss_pred             EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence            456778889999999999999998766 8999999998   2   247899999999999999999999865   45789


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~  259 (276)
                      .|+||+.+.++++++||++.|+|.++....
T Consensus        86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~  115 (124)
T cd08680          86 QVDVCSVGPDQQEECLGGAQISLADFESSE  115 (124)
T ss_pred             EEEEEeCCCCCceeEEEEEEEEhhhccCCC
Confidence            999999999999999999999999985443

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.73  E-value=3.8e-17  Score=124.81  Aligned_cols=99  Identities=33%  Similarity=0.531  Sum_probs=85.0

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~  244 (276)
                      |.|.|+|++|++|+..+.. .+||||++.++....+|+++.+ ++||+|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            5799999999999998876 8999999999998999998754 7999999999999976 4568999999998876 899


Q ss_pred             eEEEEEeCccccccccccCCCcc
Q 023876          245 MGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       245 lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ||++.+++.++..+.....+..+
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L  102 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYEL  102 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEe
Confidence            99999999998765544444443

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.72  E-value=4.9e-17  Score=124.84  Aligned_cols=99  Identities=38%  Similarity=0.567  Sum_probs=87.6

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  247 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~  247 (276)
                      |.|+|++|++|+..+.. .+||||++.+++ ..++|++++++.||.|||.|.|.+......|.|+|||++..+++++||.
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~   81 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS   81 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence            78999999999998876 899999999976 5789999999999999999999987656789999999999999999999


Q ss_pred             EEEeCccccccccccCCCccC
Q 023876          248 AEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       248 ~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      +.++|.++..+.....+..+.
T Consensus        82 ~~~~l~~l~~~~~~~~~~~L~  102 (121)
T cd04042          82 AFVDLSTLELNKPTEVKLKLE  102 (121)
T ss_pred             EEEEHHHcCCCCCeEEEEECC
Confidence            999999998776665554443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=6.4e-17  Score=124.54  Aligned_cols=100  Identities=32%  Similarity=0.466  Sum_probs=87.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      .|+|+|++|++|+..+.. .+||||++++++...+|++++++.||.|||.|.|.+.. ....|.|+|||++.++.+++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            389999999999998876 89999999999999999999999999999999999876 3567999999999999999999


Q ss_pred             EEEEeCccccccccccCCCccC
Q 023876          247 DAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       247 ~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      ++.++|.++........|..+.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~  102 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLL  102 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECC
Confidence            9999999997665555555443

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.72  E-value=4.3e-17  Score=126.27  Aligned_cols=101  Identities=25%  Similarity=0.316  Sum_probs=87.1

Q ss_pred             hhhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          158 NSLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      .....|....+.|.|+|++|++|+.++.  +.+||||++++.     ..+.+|++++++.||+|||+|.|.+..   ...
T Consensus         5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~   84 (128)
T cd08392           5 EFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSR   84 (128)
T ss_pred             EEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCc
Confidence            3445677778899999999999998875  489999999983     236799999999999999999999865   356


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      .|.|.|||.+.++++++||++.|+|.++...
T Consensus        85 ~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          85 QLQVSVWHSRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             EEEEEEEeCCCCcCcceEEEEEEEcCCcccC
Confidence            8999999999999999999999999988654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.72  E-value=6.1e-17  Score=125.26  Aligned_cols=109  Identities=28%  Similarity=0.309  Sum_probs=90.8

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +.....|....+.|.|+|++|++|+..+.. .+||||++.+.     ..+.+|++++++.||+|||+|.|.+..   ...
T Consensus         5 l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~   84 (127)
T cd04030           5 IQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRR   84 (127)
T ss_pred             EEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCC
Confidence            334456777788999999999999999876 89999999984     457899999999999999999999854   346


Q ss_pred             cEEEEEEEcCCC--CCCceeEEEEEeCccccccccccCCC
Q 023876          228 PLKVLVYDKDTF--TTDDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       228 ~L~i~v~d~~~~--~~d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      .|.|.|||++.+  +.+++||++.++|.++..+.....|.
T Consensus        85 ~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~  124 (127)
T cd04030          85 TLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWY  124 (127)
T ss_pred             EEEEEEEECCcccCCCCceEEEEEEecccccccCCccceE
Confidence            899999999875  68999999999999987655444443

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.71  E-value=1.9e-17  Score=129.54  Aligned_cols=98  Identities=22%  Similarity=0.386  Sum_probs=84.5

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC---C
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---N  225 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---~  225 (276)
                      +.....|....+.|.|+|++|++|+.++.   ..+||||++++..     .+.+|+++++++||+|||.|.|.++.   .
T Consensus         4 l~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~   83 (138)
T cd08407           4 VLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA   83 (138)
T ss_pred             EEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence            33456788888999999999999999873   2589999999833     25689999999999999999999975   3


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      ...|.|+|||++.++++++||++.+++..
T Consensus        84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          84 ASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            56799999999999999999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=6.2e-17  Score=122.19  Aligned_cols=88  Identities=38%  Similarity=0.664  Sum_probs=80.4

Q ss_pred             EEEEEEeeecCCCCCC-C-CCCcEEEEEECCeeeccccccCCCCCeE-eeEEEEEeeC---CCCcEEEEEEEcCCCCCCc
Q 023876          170 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQTVKTRVIKSNLNPVW-NESLMLSIPE---NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w-~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~  243 (276)
                      |.|+|++|++|+.++. . .+||||+++++..+++|+++++++||.| ||.|.|.+..   ....|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999998874 3 7899999999999999999999999999 9999999865   2468999999999999999


Q ss_pred             eeEEEEEeCccccc
Q 023876          244 FMGDAEIDIQPLVT  257 (276)
Q Consensus       244 ~lG~~~l~l~~l~~  257 (276)
                      +||++.++|.++..
T Consensus        81 ~iG~~~~~l~~l~~   94 (110)
T cd08688          81 AIGKVYIDLNPLLL   94 (110)
T ss_pred             ceEEEEEeHHHhcc
Confidence            99999999999986

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.71  E-value=7.4e-17  Score=125.08  Aligned_cols=102  Identities=28%  Similarity=0.361  Sum_probs=85.3

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEE-eeC---CCC
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIP  227 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~  227 (276)
                      +.....|....+.|.|+|++|++|+..+.  +.+||||++.+.   .++.+|++++++.||+|||+|.|. +..   ...
T Consensus         5 l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~   84 (128)
T cd08388           5 LFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDL   84 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCC
Confidence            33445667777899999999999998775  378999999984   446799999999999999999994 432   335


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      .|.|+|||++.++++++||++.++|.++...
T Consensus        85 ~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          85 SLHFAVLSFDRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             EEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence            7999999999999999999999999988654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.71  E-value=1e-16  Score=123.65  Aligned_cols=91  Identities=29%  Similarity=0.366  Sum_probs=79.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCCCCCc
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~~~d~  243 (276)
                      -++.|.|+|++|++|+....+.+||||+++++++.++|++++++.||+|||+|.|....  ....|+|+|||++.++.|+
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd  105 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD  105 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence            45799999999999985333388999999999889999999999999999999997532  4678999999999999999


Q ss_pred             eeEEEEEeCcccc
Q 023876          244 FMGDAEIDIQPLV  256 (276)
Q Consensus       244 ~lG~~~l~l~~l~  256 (276)
                      +||++.++|....
T Consensus       106 ~IG~~~i~l~~~~  118 (127)
T cd04032         106 LLGTCSVVPEAGV  118 (127)
T ss_pred             eeEEEEEEecCCc
Confidence            9999999998655

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=8.8e-17  Score=123.98  Aligned_cols=97  Identities=28%  Similarity=0.412  Sum_probs=84.6

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC----CCCc
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE----NIPP  228 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~  228 (276)
                      ....|....+.|.|+|++|++|+..+.. .+||||++++..     .+.+|++++++.||+|||.|.|.+..    ....
T Consensus         7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~   86 (125)
T cd04031           7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT   86 (125)
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence            3456777788999999999999998876 899999999853     57799999999999999999998643    3468


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      |.|+|||++.++.+++||++.++|.+.
T Consensus        87 l~~~V~d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          87 LEVTVWDYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             EEEEEEeCCCCCCCcEeeEEEEecccc
Confidence            999999999999999999999999983

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.70  E-value=9.4e-17  Score=129.38  Aligned_cols=102  Identities=27%  Similarity=0.395  Sum_probs=86.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEE
Q 023876          166 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYD  235 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d  235 (276)
                      ..+.|.|+|++|++|+..+.. .+||||++++     +..+.+|++++++.||.|||.|.|.+..    ....|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            568999999999999998866 8999999988     3357899999999999999999998532    33579999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          236 KDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       236 ~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ++.++++++||++.+++.++.......+|..+
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~  136 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS  136 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence            99999999999999999998765555555444

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.2e-16  Score=123.71  Aligned_cols=90  Identities=37%  Similarity=0.680  Sum_probs=83.4

Q ss_pred             eEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCc
Q 023876          168 GLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~  243 (276)
                      |.|.|+|++|++|+..+.  . .+||||++.++.++.+|++++++.||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            679999999999998887  5 89999999999999999999999999999999999976 5678999999999998999


Q ss_pred             eeEEEEEeCccccc
Q 023876          244 FMGDAEIDIQPLVT  257 (276)
Q Consensus       244 ~lG~~~l~l~~l~~  257 (276)
                      +||++.++|.++..
T Consensus        81 ~lG~~~i~l~~~~~   94 (128)
T cd04024          81 YLGEFDIALEEVFA   94 (128)
T ss_pred             cceEEEEEHHHhhc
Confidence            99999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.70  E-value=1.2e-16  Score=122.34  Aligned_cols=97  Identities=32%  Similarity=0.484  Sum_probs=83.7

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~  244 (276)
                      |.|+|++|++|+..+.. .+||||++.++   ....+|++++++.||+|||.|.|.+.. ....|.|+|||++.+ .|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            78999999999988866 89999999985   357899999999999999999999865 345699999999998 8999


Q ss_pred             eEEEEEeCccccccccccCCCcc
Q 023876          245 MGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       245 lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ||++.+++.++..+.....+..+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L  103 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSL  103 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEEC
Confidence            99999999999877665555444

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.70  E-value=1.3e-16  Score=120.72  Aligned_cols=89  Identities=35%  Similarity=0.652  Sum_probs=79.2

Q ss_pred             eEEEEEEEeeecCCCCCCC--CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM--TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  238 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~  238 (276)
                      |.|.|+|++|++|+..+..  .+||||++++.   ....+|+++++++||+|||.|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999988764  78999999983   346799999999999999999998754    24689999999999


Q ss_pred             CCCCceeEEEEEeCcccc
Q 023876          239 FTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~  256 (276)
                      ++.|++||++.+++.++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          81 FTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCcceEEEEEHHHHh
Confidence            999999999999999997

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=9.5e-17  Score=125.54  Aligned_cols=98  Identities=26%  Similarity=0.315  Sum_probs=84.2

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~--~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +..+..|....+.|.|+|++|++|+..+.. .+||||++++.   .  .+.+|+++++++||+|||+|.|.+..   ...
T Consensus         4 i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~   83 (136)
T cd08406           4 ILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDL   83 (136)
T ss_pred             EEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCc
Confidence            334566777888999999999999998866 89999999982   2  25689999999999999999999865   456


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      .|.|+|||++.++++++||++.+....
T Consensus        84 ~l~~~V~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          84 SLRVTVAESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             EEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence            799999999999999999999997764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.70  E-value=1.2e-16  Score=123.33  Aligned_cols=109  Identities=24%  Similarity=0.357  Sum_probs=90.2

Q ss_pred             hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC----CCCcE
Q 023876          158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPL  229 (276)
Q Consensus       158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L  229 (276)
                      .....|....+.|.|+|++|++|+..+.. .+||||++.+   +....+|++++++.||.|||.|.|.+..    ....|
T Consensus         6 ~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l   85 (125)
T cd08386           6 QFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVL   85 (125)
T ss_pred             EEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEE
Confidence            33455666678999999999999998876 8999999998   3467899999999999999999997532    23579


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI  266 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~  266 (276)
                      .|+|||++.++++++||++.++|.++..+.....|..
T Consensus        86 ~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  122 (125)
T cd08386          86 YLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKD  122 (125)
T ss_pred             EEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEe
Confidence            9999999999999999999999999886555444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.5e-16  Score=119.08  Aligned_cols=88  Identities=26%  Similarity=0.455  Sum_probs=79.7

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      .|.|+|++|++|+..+.. .+||||+++++++..+|++++++.||+|||.|.|.+.. ....|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            378999999999998766 89999999999999999999999999999999999976 45689999999876   78999


Q ss_pred             EEEEeCccccccc
Q 023876          247 DAEIDIQPLVTAA  259 (276)
Q Consensus       247 ~~~l~l~~l~~~~  259 (276)
                      ++.++|.++....
T Consensus        78 ~~~i~l~~l~~~~   90 (105)
T cd04050          78 SLTLPLSELLKEP   90 (105)
T ss_pred             EEEEEHHHhhccc
Confidence            9999999988653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=2.5e-16  Score=120.37  Aligned_cols=92  Identities=30%  Similarity=0.581  Sum_probs=84.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      |.|.|+|++|++|+..+.. .+||||++.++....+|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            5799999999999998877 899999999998889999999999999999999998765678999999999988999999


Q ss_pred             EEEEeCccccccc
Q 023876          247 DAEIDIQPLVTAA  259 (276)
Q Consensus       247 ~~~l~l~~l~~~~  259 (276)
                      ++.+++.++..+.
T Consensus        81 ~~~~~l~~~~~~~   93 (119)
T cd08377          81 KVAIPLLSIKNGE   93 (119)
T ss_pred             EEEEEHHHCCCCC
Confidence            9999999987543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=1.3e-16  Score=124.55  Aligned_cols=101  Identities=27%  Similarity=0.346  Sum_probs=86.7

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------CeeeccccccCCCCCeEeeEEEEEeeC-----CC
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPE-----NI  226 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------~~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~  226 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++++.       ....+|+++++++||+|||.|.|.+..     ..
T Consensus         8 ~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~   87 (133)
T cd04009           8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEG   87 (133)
T ss_pred             EEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCC
Confidence            345666678899999999999998776 89999999984       347899999999999999999999864     24


Q ss_pred             CcEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 023876          227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       227 ~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      ..|.|+|||++.++++++||++.++|+++...+.
T Consensus        88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~  121 (133)
T cd04009          88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVED  121 (133)
T ss_pred             CEEEEEEEecCCCCCCcEeEEEEEeHHHCCcccc
Confidence            5799999999999999999999999999875443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.69  E-value=1.2e-16  Score=123.20  Aligned_cols=109  Identities=20%  Similarity=0.294  Sum_probs=90.5

Q ss_pred             hhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEE-eeC---CCC
Q 023876          156 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIP  227 (276)
Q Consensus       156 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~  227 (276)
                      .+..+..|....+.|.|+|++|++|+..+.. ..||||++.+   ..++.+|++.+. .||+|||.|.|. +..   ...
T Consensus         4 ~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~   82 (124)
T cd08389           4 DLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM   82 (124)
T ss_pred             EEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence            3444567788888999999999999998876 7899999877   245789999888 999999999998 543   456


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      .|.|+|||++.++++++||++.++|+++..+.....|.
T Consensus        83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~  120 (124)
T cd08389          83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWL  120 (124)
T ss_pred             EEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEE
Confidence            79999999999999999999999999997665544443

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.69  E-value=2.4e-16  Score=122.06  Aligned_cols=98  Identities=29%  Similarity=0.444  Sum_probs=83.6

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcCCCC-CC
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFT-TD  242 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~~~~-~d  242 (276)
                      .|.|+|++|++|+..+.. .+||||++.+++++.+|++++++.||.|||.|.|.+...    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            378999999999988876 899999999999999999999999999999999998642    357999999999886 89


Q ss_pred             ceeEEEEEeCcccc-ccccccCCCc
Q 023876          243 DFMGDAEIDIQPLV-TAARACETPI  266 (276)
Q Consensus       243 ~~lG~~~l~l~~l~-~~~~~~~~~~  266 (276)
                      ++||++.++++++. .+.....|..
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~  105 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYP  105 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeE
Confidence            99999999999987 3333333433

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.69  E-value=1.5e-16  Score=121.81  Aligned_cols=99  Identities=18%  Similarity=0.292  Sum_probs=82.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCC
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT  238 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~  238 (276)
                      ..+.|.|+|++|++|+.++.+.+||||++++..     .+.+|++++++.||+|||.|.|.+..  ....|.|+|||++.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            467899999999999998844899999999942     35689999999999999999999865  33568899999998


Q ss_pred             CC-CCceeEEEEEeCccccccccccCC
Q 023876          239 FT-TDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       239 ~~-~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      .+ .+++||++.|+|.++..+.....|
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~~~~~~W  116 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQKEISGW  116 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccCccccce
Confidence            76 478999999999999855443333

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.69  E-value=2.1e-16  Score=121.38  Aligned_cols=99  Identities=21%  Similarity=0.365  Sum_probs=84.8

Q ss_pred             EEEEEEeeecCCCCCC-C-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          170 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      |.|+|++|++|+..+. . .+||||.+.++++ ..+|+++++|+||.|||.|.|.+......|.|.|||++.++++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            6799999999998743 3 7899999999765 57999999999999999999999875678999999999999999999


Q ss_pred             EEEEeCccccccccccCCCccC
Q 023876          247 DAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       247 ~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      .+.++|+++..+...+.|..+.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~  103 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQ  103 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEE
Confidence            9999999998665555454443

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.69  E-value=2.2e-16  Score=120.97  Aligned_cols=100  Identities=35%  Similarity=0.564  Sum_probs=86.6

Q ss_pred             eEEEEEEEeeecCCCCCC-------CCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCC
Q 023876          168 GLIKVNVVKGTNLAVRDV-------MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTF  239 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~  239 (276)
                      |.|.|+|++|++|+..+.       +.+||||++.++++.++|++++++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998764       268999999999999999999999999999999999865 567899999999988


Q ss_pred             CCCceeEEEEEeCccccccccccCCCccC
Q 023876          240 TTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                       .+++||.+.++|.++........|..+.
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~  108 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLE  108 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECc
Confidence             8999999999999998765555554443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=3.2e-16  Score=120.17  Aligned_cols=102  Identities=23%  Similarity=0.422  Sum_probs=88.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCcee
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM  245 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~l  245 (276)
                      |.|.|+|++|++|+..+.. .+||||++.+++ ...+|.+++++.||.|||.|.|.+......|.|+|||++..++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            5799999999999998876 899999999976 46899999999999999999998877667899999999999999999


Q ss_pred             EEEEEeCccccccccccCCCccCCC
Q 023876          246 GDAEIDIQPLVTAARACETPISMSP  270 (276)
Q Consensus       246 G~~~l~l~~l~~~~~~~~~~~~~~~  270 (276)
                      |++.++|.++... ....+..+++.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~  104 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDD  104 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCC
Confidence            9999999999876 44445544443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.69  E-value=1.8e-16  Score=122.65  Aligned_cols=97  Identities=23%  Similarity=0.388  Sum_probs=83.5

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECC--eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  247 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~--~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~  247 (276)
                      |.|+|++|++|+. ..+.+||||++.++.  ++.+|++++++.||+|||.|.|.+......|.|+|||++..+.+++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            5799999999988 444899999999973  5689999999999999999999997656789999999999999999999


Q ss_pred             EEEeCccccccccccCCCcc
Q 023876          248 AEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       248 ~~l~l~~l~~~~~~~~~~~~  267 (276)
                      +.+++.++........+..+
T Consensus        80 ~~i~l~~l~~~~~~~~~~~L   99 (126)
T cd08678          80 AIVPFDELRKNPSGRQIFPL   99 (126)
T ss_pred             EEEeHHHhccCCceeEEEEe
Confidence            99999998876655544333

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.69  E-value=2e-16  Score=121.67  Aligned_cols=104  Identities=30%  Similarity=0.438  Sum_probs=87.5

Q ss_pred             hcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ..|....+.|.|+|++|++|+..+ .. .+||||++.+.     ..+.+|++++++.||+|||.|.|.+..   ....|.
T Consensus         7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~   86 (123)
T cd08521           7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQ   86 (123)
T ss_pred             EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEE
Confidence            456677789999999999999988 45 89999999882     146799999999999999999999865   346899


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      |+|||++.++++++||++.++|.++..+.....|
T Consensus        87 i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w  120 (123)
T cd08521          87 LSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW  120 (123)
T ss_pred             EEEEeCCCCcCCceeeEEEEecccccccCCCccE
Confidence            9999999999999999999999999655444333

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.68  E-value=4.2e-16  Score=119.88  Aligned_cols=96  Identities=30%  Similarity=0.582  Sum_probs=84.9

Q ss_pred             eeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC--eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCC
Q 023876          167 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  242 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~--~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d  242 (276)
                      +|.|.|+|++|++|+..+..  .+||||++.++.  ...+|++++++.||.|||.|.|.+......|.|+|||++..+.|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            47899999999999976533  689999999977  78899999999999999999999886678999999999999899


Q ss_pred             ceeEEEEEeCcccccccccc
Q 023876          243 DFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       243 ~~lG~~~l~l~~l~~~~~~~  262 (276)
                      ++||.+.++|.++.......
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~  100 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQE  100 (124)
T ss_pred             ceeEEEEEEHHHhccCcccc
Confidence            99999999999998765543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.68  E-value=3.8e-16  Score=120.36  Aligned_cols=100  Identities=31%  Similarity=0.508  Sum_probs=87.3

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeCC----CCcEEEEEEEcCCCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFTT  241 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~~~~~  241 (276)
                      |.|.|+|++|++|+..+.. .+||||++.++++..+|++.++ +.||.|||.|.|.+...    ...|.|+|||++.++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            5799999999999988876 8999999999998889998875 89999999999999764    4689999999999999


Q ss_pred             CceeEEEEEeCccccccccccCCCcc
Q 023876          242 DDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       242 d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      +++||++.++|.++........+..+
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l  106 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAEL  106 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEe
Confidence            99999999999999876655554443

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=2.9e-16  Score=124.63  Aligned_cols=90  Identities=28%  Similarity=0.428  Sum_probs=80.6

Q ss_pred             EEEEEEeeecCCCCCCC---------------CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEE
Q 023876          170 IKVNVVKGTNLAVRDVM---------------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVL  232 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~---------------~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~  232 (276)
                      |.|+|++|++|+.++..               .+||||++.+++++.+|++++++.||+|||+|.|.+..  ....|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            78999999999998743               47999999999999999999999999999999998743  45689999


Q ss_pred             EEEcCCCCCCceeEEEEEeCccccccc
Q 023876          233 VYDKDTFTTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       233 v~d~~~~~~d~~lG~~~l~l~~l~~~~  259 (276)
                      |||++..++|++||.+.++|.++....
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            999999999999999999999887644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.68  E-value=4.4e-16  Score=123.83  Aligned_cols=90  Identities=29%  Similarity=0.419  Sum_probs=81.2

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCcee
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFM  245 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~l  245 (276)
                      +|.|+|++|++|+..+.. .+||||++.++++..+|+++.+ ++||+|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            488999999999999887 8999999999999999999876 6999999999999865 346899999999998899999


Q ss_pred             EEEEEeCcccccc
Q 023876          246 GDAEIDIQPLVTA  258 (276)
Q Consensus       246 G~~~l~l~~l~~~  258 (276)
                      |++.++|.++..+
T Consensus        81 G~v~i~L~~l~~~   93 (150)
T cd04019          81 GRAVIPLNDIERR   93 (150)
T ss_pred             EEEEEEHHHCccc
Confidence            9999999998653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.68  E-value=3.8e-16  Score=123.71  Aligned_cols=97  Identities=24%  Similarity=0.330  Sum_probs=80.7

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEee------------C----CCCc
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP------------E----NIPP  228 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~------------~----~~~~  228 (276)
                      |.|+|++|++|+. ..+.+||||++++..     .+.+|+++++++||+|||.|.|.+.            .    ....
T Consensus         2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T cd04010           2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE   80 (148)
T ss_pred             EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence            7899999999988 334899999999955     5779999999999999999999984            1    1246


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCcccccc-ccccCCCcc
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA-ARACETPIS  267 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~-~~~~~~~~~  267 (276)
                      |.|.|||++.++.++|||++.|+|.++... .....|..+
T Consensus        81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L  120 (148)
T cd04010          81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFL  120 (148)
T ss_pred             EEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeec
Confidence            899999999988999999999999998876 334444443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.67  E-value=9.6e-16  Score=118.52  Aligned_cols=89  Identities=25%  Similarity=0.478  Sum_probs=80.9

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      .+|.|+|++|++|...+.. .+||||++.++++..+|++++++.||.|||.|.|.+......|.|+|||++.. .|++||
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG   81 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLG   81 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceE
Confidence            5799999999999988876 89999999999999999999999999999999998877677899999999887 489999


Q ss_pred             EEEEeCccccc
Q 023876          247 DAEIDIQPLVT  257 (276)
Q Consensus       247 ~~~l~l~~l~~  257 (276)
                      .+.+++.++..
T Consensus        82 ~~~~~l~~~~~   92 (126)
T cd04046          82 QATLSADPNDS   92 (126)
T ss_pred             EEEEecccCCC
Confidence            99999987643

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1.8e-16  Score=123.73  Aligned_cols=95  Identities=31%  Similarity=0.444  Sum_probs=83.8

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      +..|....+.|.|+|++|++|+..+.. .+||||++.+.     ....+|+++++++||.|||+|.|.+..   ....|.
T Consensus         5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~   84 (133)
T cd08384           5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE   84 (133)
T ss_pred             EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence            356778889999999999999998876 89999999984     246799999999999999999999864   346799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCcc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      |+|||++..+.+++||++.+++..
T Consensus        85 ~~V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          85 ITVWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             EEEEeCCCCCCccEEEEEEEecCC
Confidence            999999999999999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.67  E-value=8.4e-16  Score=118.02  Aligned_cols=89  Identities=27%  Similarity=0.623  Sum_probs=80.7

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  247 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~  247 (276)
                      |+|+|++|++|+..+.. .+||||++.+++. ..+|+++++++||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999998877 8999999999765 469999999999999999999987666789999999999999999999


Q ss_pred             EEEeCcccccc
Q 023876          248 AEIDIQPLVTA  258 (276)
Q Consensus       248 ~~l~l~~l~~~  258 (276)
                      +.+++.++...
T Consensus        82 ~~~~~~~~~~~   92 (121)
T cd04054          82 VSLTREVISAH   92 (121)
T ss_pred             EEEcHHHhccC
Confidence            99999888754

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.67  E-value=4.4e-16  Score=119.76  Aligned_cols=105  Identities=21%  Similarity=0.337  Sum_probs=88.7

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKV  231 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i  231 (276)
                      ...|....+.|.|+|++|++|+..+ .. .+||||++++.   ....+|++++++.||+|||.|.|.+..   ....|.|
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i   85 (123)
T cd08390           6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL   85 (123)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence            3456777889999999999999987 44 89999999983   346789999999999999999999865   2457999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          232 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       232 ~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      +|||++..+.+++||++.++|.++........|
T Consensus        86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w  118 (123)
T cd08390          86 SVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVW  118 (123)
T ss_pred             EEEECCcCCCCcEEEEEEEeccceecCCCceEE
Confidence            999999988999999999999999876655433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.66  E-value=5.6e-16  Score=119.91  Aligned_cols=96  Identities=18%  Similarity=0.334  Sum_probs=81.8

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CC--eeeccccccCCC-CCeEeeEEEEEeeC--CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GH--QTVKTRVIKSNL-NPVWNESLMLSIPE--NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~--~~~~T~~~~~t~-nP~w~e~~~f~~~~--~~~~L~  230 (276)
                      ++.|....+.|+|+|++|++|+.+... ..||||+|.+   +.  .+.+|+++++++ +|+|||.|.|.++.  ....|.
T Consensus         6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~   85 (135)
T cd08692           6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL   85 (135)
T ss_pred             EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence            467889999999999999999987544 6799999988   22  468999999995 69999999999976  234678


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      |+|||++..+++++||++.+..+..
T Consensus        86 v~v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          86 IKLYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             EEEEeCCCCcCCceEEEEEECCccC
Confidence            9999999999999999999999764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.66  E-value=5.8e-16  Score=121.33  Aligned_cols=98  Identities=31%  Similarity=0.384  Sum_probs=84.4

Q ss_pred             hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876          158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPP  228 (276)
Q Consensus       158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~  228 (276)
                      .....|....+.|.|+|++|++|+..+.. .+||||++.+.  .   ...+|+++++++||.|||.|.|.+..   ....
T Consensus         5 ~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~   84 (136)
T cd08402           5 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVH   84 (136)
T ss_pred             EEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCE
Confidence            34467888889999999999999998876 89999999983  2   35689999999999999999999864   2347


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      |.|+|||++.++++++||++.+++...
T Consensus        85 l~~~v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          85 LIVTVLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             EEEEEEeCCCCCCCceeEEEEECCccC
Confidence            999999999999999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.66  E-value=6.4e-16  Score=118.63  Aligned_cols=86  Identities=34%  Similarity=0.531  Sum_probs=78.3

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEE
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGD  247 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~  247 (276)
                      .|.|+|++|++|+..   .+||||++.++....+|++++++.||+|||+|.|.+.. ....|.|+|||++.. .+++||+
T Consensus         1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           1 YLYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             CEEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            489999999999887   68999999999999999999999999999999999866 567899999999987 7899999


Q ss_pred             EEEeCcccccc
Q 023876          248 AEIDIQPLVTA  258 (276)
Q Consensus       248 ~~l~l~~l~~~  258 (276)
                      +.++|+++...
T Consensus        77 ~~i~l~~l~~~   87 (121)
T cd08378          77 VCFDLSEVPTR   87 (121)
T ss_pred             EEEEhHhCcCC
Confidence            99999998753

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.65  E-value=1.1e-15  Score=119.11  Aligned_cols=92  Identities=36%  Similarity=0.681  Sum_probs=82.1

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-------eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  240 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~  240 (276)
                      .|.|+|++|++|+..+.. .+||||++.+.+.       ..+|++++++.||.|||.|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            378999999999998876 8999999999654       46899999999999999999998775678999999999999


Q ss_pred             CCceeEEEEEeCcccccccc
Q 023876          241 TDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~~~  260 (276)
                      .+++||++.+++.++....+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~  100 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETP  100 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCc
Confidence            99999999999999987654

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.65  E-value=1.6e-15  Score=121.81  Aligned_cols=104  Identities=28%  Similarity=0.419  Sum_probs=88.1

Q ss_pred             ceeeEEEEEEEeeecCCCCCC-----------------------------C--CCCcEEEEEECCee-eccccccCCCCC
Q 023876          165 EFVGLIKVNVVKGTNLAVRDV-----------------------------M--TSDPYVILALGHQT-VKTRVIKSNLNP  212 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~-----------------------------~--~~dpyv~v~l~~~~-~~T~~~~~t~nP  212 (276)
                      ..-|.|.|+|.+|++|+.+|.                             .  .+||||++.+++.+ .+|++++++.||
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP   83 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence            456899999999999999872                             1  57999999998755 699999999999


Q ss_pred             eEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876          213 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       213 ~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      +|||.|.|.+......|.|+|||++.++ +++||.+.++++++..+.....|..+..
T Consensus        84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~  139 (158)
T cd04015          84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILD  139 (158)
T ss_pred             ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcC
Confidence            9999999998766678999999999875 6899999999999987766666655543

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.65  E-value=2.2e-15  Score=116.47  Aligned_cols=101  Identities=20%  Similarity=0.360  Sum_probs=83.3

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCc
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~  243 (276)
                      +...|.|+|++|++|+..+  .+||||++.+++. ..+|++. .+.||.|||.|.|.+... ...+.|.|||++..++++
T Consensus         2 ~~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             ceeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            3457999999999998764  6899999999874 4688874 589999999999986543 357899999999999999


Q ss_pred             eeEEEEEeCccccccccccCCCccCC
Q 023876          244 FMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       244 ~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      +||++.++|..+..+.....|..+..
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~  104 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSS  104 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEccc
Confidence            99999999999987766555555543

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.65  E-value=4.2e-16  Score=122.14  Aligned_cols=95  Identities=32%  Similarity=0.454  Sum_probs=82.0

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++++.  .   .+.+|++++++.||.|+|+|.|.+..   ....|.
T Consensus         7 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~   86 (136)
T cd08404           7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVE   86 (136)
T ss_pred             EEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEE
Confidence            345556678899999999999998876 89999999983  2   25689999999999999999999864   345689


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCcc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      |+|||++.++++++||++.+++..
T Consensus        87 ~~v~d~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          87 FLVLDSDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             EEEEECCCCCCCccEEEEEECCcC
Confidence            999999999999999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=1.1e-15  Score=119.79  Aligned_cols=102  Identities=25%  Similarity=0.382  Sum_probs=86.4

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEEC----CeeeccccccCCCCCeEeeEEEEEeeCC----------------CCcE
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPL  229 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~----~~~~~T~~~~~t~nP~w~e~~~f~~~~~----------------~~~L  229 (276)
                      |.|+|++|++|+.+..+.+||||+++++    ....+|++++++.||.|+|.|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999988733389999999997    6789999999999999999999998653                4579


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCCCC
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPC  271 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~~  271 (276)
                      .|+|||++.++.+++||++.++|.++........|..+....
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            999999999889999999999999998666666666655444

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.65  E-value=3.7e-16  Score=122.57  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ....|....+.|.|+|++|++|+..+...+||||++.+..     .+.+|++++++.||+|||.|.|.+..   ....|.
T Consensus         6 ~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~   85 (137)
T cd08409           6 ISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLS   85 (137)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEE
Confidence            3456677788999999999999988844899999999832     35689999999999999999999864   346799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      |+||+.+..+++++||++.+.......+.....|.+++
T Consensus        86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            99999999999999999999876555444444444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.65  E-value=5.2e-16  Score=121.60  Aligned_cols=96  Identities=34%  Similarity=0.500  Sum_probs=82.7

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++.+  +.   .+.+|++++++.||+|||.|.|.+..   ....|.
T Consensus         7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~   86 (136)
T cd08405           7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI   86 (136)
T ss_pred             EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence            345666778999999999999988766 8999999988  22   35689999999999999999999853   245799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      |+|||++.++++++||++.+++.+.
T Consensus        87 ~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          87 ITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             EEEEECCCCCCCcEeEEEEECCccC
Confidence            9999999999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.65  E-value=2.1e-15  Score=116.26  Aligned_cols=89  Identities=33%  Similarity=0.527  Sum_probs=78.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCee--eccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~  244 (276)
                      +|.|.|++|++|+..+.. .+||||++.++++.  .+|.++++++||+|||.|.|.+.. ....|.|+|||++.++.|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            378999999999998877 89999999998765  578888899999999999998754 45689999999999999999


Q ss_pred             eEEEEEeCccccc
Q 023876          245 MGDAEIDIQPLVT  257 (276)
Q Consensus       245 lG~~~l~l~~l~~  257 (276)
                      ||++.++|.+..-
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=9.6e-16  Score=120.28  Aligned_cols=98  Identities=20%  Similarity=0.336  Sum_probs=84.7

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPP  228 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~  228 (276)
                      .+..|....+.|.|+|++|++|+..+.. .+||||++.+..      .+.+|++++++.||+|||+|.|.+..   ....
T Consensus         6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~   85 (138)
T cd08408           6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT   85 (138)
T ss_pred             EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence            3456778889999999999999998877 899999999831      25699999999999999999999865   4468


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCcccc
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                      |.|+|||.+.++++++||++.+++....
T Consensus        86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          86 LMFSVYNKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             EEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence            9999999999999999999999887543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.64  E-value=1.8e-15  Score=116.50  Aligned_cols=89  Identities=27%  Similarity=0.551  Sum_probs=79.9

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEEC-CeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCC--Ccee
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--DDFM  245 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~--d~~l  245 (276)
                      |.|+|++|++|+..+.. .+||||++.++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++.  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999988876 89999999995 678899999999999999999999976 6789999999998875  5799


Q ss_pred             EEEEEeCccccccc
Q 023876          246 GDAEIDIQPLVTAA  259 (276)
Q Consensus       246 G~~~l~l~~l~~~~  259 (276)
                      |++.+++.++....
T Consensus        81 G~~~i~l~~l~~~~   94 (123)
T cd08382          81 GCVRIRANAVLPLK   94 (123)
T ss_pred             eEEEEEHHHccccC
Confidence            99999999987554

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.64  E-value=1.5e-15  Score=118.78  Aligned_cols=95  Identities=26%  Similarity=0.506  Sum_probs=80.7

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL  229 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L  229 (276)
                      ....|....+.|.|+|++|++|+..+.. .+||||++.+  +.   .+.+|++++++.||.|||+|.|.+..   ....|
T Consensus         5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l   84 (135)
T cd08410           5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSL   84 (135)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEE
Confidence            3456777789999999999999998876 8999999997  22   35789999999999999999999854   23469


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQ  253 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~  253 (276)
                      .|+|||++..+++++||++.+...
T Consensus        85 ~~~V~d~d~~~~~~~iG~~~l~~~  108 (135)
T cd08410          85 VFTVYGHNVKSSNDFIGRIVIGQY  108 (135)
T ss_pred             EEEEEeCCCCCCCcEEEEEEEcCc
Confidence            999999999999999999886653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.63  E-value=1.6e-15  Score=116.99  Aligned_cols=93  Identities=19%  Similarity=0.414  Sum_probs=82.5

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeecccccc-CCCCCeEeeEEEEEeeCC-----CCcEEEEEEEcCCCC
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIK-SNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFT  240 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~-~t~nP~w~e~~~f~~~~~-----~~~L~i~v~d~~~~~  240 (276)
                      .|.|+|++|++|+..+.. .+||||++.++. ++.+|++.+ .+.||.|||.|.|.+...     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            378999999999988866 899999999987 888999975 589999999999999764     578999999999988


Q ss_pred             CCceeEEEEEeCccccccccc
Q 023876          241 TDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      .+++||++.++|.++......
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~  101 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASP  101 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCC
Confidence            999999999999999876653

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.63  E-value=2.8e-15  Score=113.26  Aligned_cols=90  Identities=24%  Similarity=0.389  Sum_probs=79.3

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC-----CCcEEEEEEEcCCCCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFTTD  242 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~-----~~~L~i~v~d~~~~~~d  242 (276)
                      -.|.|+|++|++|+   ...+||||++++++++.+|++++++.||.|||.|.|.+...     ...|.|+|||++.++++
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            46899999999998   23789999999999999999999999999999999987432     35799999999999899


Q ss_pred             ceeEEEEEeCcccccccc
Q 023876          243 DFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       243 ~~lG~~~l~l~~l~~~~~  260 (276)
                      ++||++.++|+++.....
T Consensus        81 ~~iG~~~i~l~~v~~~~~   98 (111)
T cd04011          81 TLIGSFKLDVGTVYDQPD   98 (111)
T ss_pred             CccEEEEECCccccCCCC
Confidence            999999999999976533

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.63  E-value=3.8e-15  Score=116.08  Aligned_cols=92  Identities=25%  Similarity=0.479  Sum_probs=81.6

Q ss_pred             eeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEEEEE
Q 023876          166 FVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV  233 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v  233 (276)
                      ..|.|.|+|++|++|...+.           ..+||||++.++++. .+|++++++.||.|||.|.|.+.. ...|.|.|
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v   80 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV   80 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence            35889999999999988775           268999999998765 589999999999999999999974 57899999


Q ss_pred             EEcCCCCCCceeEEEEEeCcccccc
Q 023876          234 YDKDTFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       234 ~d~~~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      ||++.++.+++||++.++|.++..+
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~  105 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQR  105 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhccc
Confidence            9999988999999999999999873

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.62  E-value=2.4e-15  Score=117.47  Aligned_cols=94  Identities=29%  Similarity=0.489  Sum_probs=81.2

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++++.  +   .+.+|++++++.||.|||.|.|.+..   ....|.
T Consensus         6 ~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~   85 (134)
T cd08403           6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLI   85 (134)
T ss_pred             EEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEE
Confidence            345667789999999999999998876 89999999983  1   35689999999999999999999854   234699


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQ  253 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~  253 (276)
                      |+|||++.++.+++||++.+++.
T Consensus        86 ~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          86 IAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             EEEEECCCCCCCceeEEEEECCC
Confidence            99999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.62  E-value=4.7e-15  Score=114.79  Aligned_cols=88  Identities=38%  Similarity=0.650  Sum_probs=79.0

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCC--------
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF--------  239 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~--------  239 (276)
                      .|.|+|++|++|+..+.. .+||||++.++....+|+++++++||.|||.|.|.+......|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999998876 89999999999889999999999999999999998866567899999999852        


Q ss_pred             ---CCCceeEEEEEeCcccc
Q 023876          240 ---TTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       240 ---~~d~~lG~~~l~l~~l~  256 (276)
                         +.+++||++.+++.++.
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             ccccCCCcceEEEEEhHHcc
Confidence               46899999999998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.61  E-value=6.6e-15  Score=111.83  Aligned_cols=98  Identities=39%  Similarity=0.533  Sum_probs=83.8

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      |.|+|++|++|+..+.. .+||||++.+.+ ..++|+++.++.+|.|||.|.|.+.. ....|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57899999999988866 899999999964 45799999999999999999999876 4578999999999999999999


Q ss_pred             EEEEeCccccccccccCCCcc
Q 023876          247 DAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       247 ~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ++.+++.++..+.....+..+
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L  101 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPL  101 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEEC
Confidence            999999998876555444433

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=6.4e-15  Score=113.35  Aligned_cols=101  Identities=27%  Similarity=0.442  Sum_probs=84.7

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEe-eC---CCCcE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPL  229 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~-~~---~~~~L  229 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++.+.     ....+|++++++.||.|||.|.|.. ..   ....|
T Consensus         7 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l   86 (123)
T cd04035           7 TLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTL   86 (123)
T ss_pred             EEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEE
Confidence            345667778999999999999988876 89999999872     2468999999999999999999963 32   24689


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccccc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      .|+|||++.. .+++||++.++|+++..+...
T Consensus        87 ~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~  117 (123)
T cd04035          87 RLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK  117 (123)
T ss_pred             EEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence            9999999988 899999999999999865443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.59  E-value=8.2e-15  Score=112.31  Aligned_cols=95  Identities=29%  Similarity=0.447  Sum_probs=78.9

Q ss_pred             EEEeeecCCCCCCC-CCCcEEEEEECCe-------eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC----C
Q 023876          173 NVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT----F  239 (276)
Q Consensus       173 ~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~----~  239 (276)
                      -.++|++|+..+.. .+||||++++...       ..+|+++++++||+|+|.|.|.+.. ....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            35789999988876 8999999999554       4899999999999999999998643 45689999999997    8


Q ss_pred             CCCceeEEEEEeCccccccccccCCCcc
Q 023876          240 TTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      +.+++||++.+++.+|..+.....+..+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence            8999999999999999866544444433

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.59  E-value=1.7e-14  Score=111.44  Aligned_cols=89  Identities=30%  Similarity=0.517  Sum_probs=78.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCc
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~  243 (276)
                      .|.|+|++|++|+..+.. .+||||++.+..   ...+|+++++++||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            588999999999998877 899999998753   36799999999999999999999876 4568999999999988999


Q ss_pred             eeEEEEEeCccccc
Q 023876          244 FMGDAEIDIQPLVT  257 (276)
Q Consensus       244 ~lG~~~l~l~~l~~  257 (276)
                      +||++.++|+++..
T Consensus        82 ~iG~~~i~l~~~~~   95 (126)
T cd04043          82 LCGRASLKLDPKRF   95 (126)
T ss_pred             eEEEEEEecCHHHc
Confidence            99999999987653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=1.1e-15  Score=135.53  Aligned_cols=92  Identities=36%  Similarity=0.567  Sum_probs=83.3

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF  239 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~  239 (276)
                      ..|.|.|.+|++|.++|.+ .+||||++.+     +..+++|++++.++||+|||+|.|.+..  ....|.|+|||||+.
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            4688999999999999988 9999999998     3457899999999999999999999965  457899999999999


Q ss_pred             CCCceeEEEEEeCccccccc
Q 023876          240 TTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~  259 (276)
                      +++||+|..++.+++|+++.
T Consensus       260 sRNDFMGslSFgisEl~K~p  279 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKAP  279 (683)
T ss_pred             ccccccceecccHHHHhhcc
Confidence            99999999999999998654

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.59  E-value=1.9e-14  Score=114.40  Aligned_cols=99  Identities=31%  Similarity=0.423  Sum_probs=79.3

Q ss_pred             EEEEEEeeec--CCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeCC---------CCcEEEE
Q 023876          170 IKVNVVKGTN--LAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVL  232 (276)
Q Consensus       170 L~V~v~~a~~--L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~~---------~~~L~i~  232 (276)
                      ..++|..|++  |+..+.. ..||||++++     +.++.+|+++++|+||+|||.|.|.+...         ...|+|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455666666  6666655 7899999987     34688999999999999999999998643         3579999


Q ss_pred             EEEcCCC-CCCceeEEEEEeCccccccccccCCCccC
Q 023876          233 VYDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       233 v~d~~~~-~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      |||++.+ .+|++||++.++|+.+......+.+.+++
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~  120 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM  120 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence            9999986 57999999999999998776666555544

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.58  E-value=3.8e-15  Score=116.14  Aligned_cols=106  Identities=27%  Similarity=0.380  Sum_probs=86.5

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCC---CCcEEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKV  231 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~---~~~L~i  231 (276)
                      ..|....+.|.|+|++|++|+..+.. .+||||++++..     ...+|++++++.||.|||+|.|.+...   ...|.|
T Consensus         7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~   86 (134)
T cd00276           7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI   86 (134)
T ss_pred             EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence            34555567899999999999988766 899999999843     256999999999999999999998653   468999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          232 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       232 ~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      +|||++..+.+++||++.+++++  .+.....|..++
T Consensus        87 ~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  121 (134)
T cd00276          87 TVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML  121 (134)
T ss_pred             EEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence            99999998899999999999998  333444444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.58  E-value=1.5e-14  Score=114.97  Aligned_cols=90  Identities=32%  Similarity=0.557  Sum_probs=78.8

Q ss_pred             cceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----------------------------eeeccccccCCCCCe
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----------------------------QTVKTRVIKSNLNPV  213 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----------------------------~~~~T~~~~~t~nP~  213 (276)
                      ....+.|.|+|++|++|+..+.. .+||||++.++.                             ...+|.++++++||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            45678999999999999999876 899999999853                             236899999999999


Q ss_pred             EeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          214 WNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       214 w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      |||.|.|.+.. ....|.|+|||++    +++||++.++++++..
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~  144 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS  144 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence            99999999865 4568999999987    8999999999999883

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.57  E-value=2.7e-14  Score=111.73  Aligned_cols=87  Identities=28%  Similarity=0.537  Sum_probs=75.4

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC----------CCCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------~~~~L~i~v~d~~  237 (276)
                      .|.|.|++|++|+..+.. .+||||++.++.++.+|++++++.||.|||.|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            488999999999998877 89999999999999999999999999999999997532          1246899999999


Q ss_pred             CCCCCceeEEEEE-eCccc
Q 023876          238 TFTTDDFMGDAEI-DIQPL  255 (276)
Q Consensus       238 ~~~~d~~lG~~~l-~l~~l  255 (276)
                      ..++|++||++.+ ++..+
T Consensus        82 ~~~~d~~iG~~~i~~~~~~  100 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKL  100 (135)
T ss_pred             CCCCCccceEEEeeeeeec
Confidence            9999999999986 44333

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.57  E-value=2.2e-14  Score=110.99  Aligned_cols=90  Identities=28%  Similarity=0.375  Sum_probs=78.5

Q ss_pred             EEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCCceeEEEEE
Q 023876          174 VVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFMGDAEI  250 (276)
Q Consensus       174 v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~~lG~~~l  250 (276)
                      |++|++|+. ..+.+||||++.++..+.+|++++++.||+|||.|.|.+..   ....|.|+|||++..+++++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            688999988 33489999999999999999999999999999999999864   35789999999999999999999999


Q ss_pred             eCccccccccccCC
Q 023876          251 DIQPLVTAARACET  264 (276)
Q Consensus       251 ~l~~l~~~~~~~~~  264 (276)
                      +|+++..+.....+
T Consensus        81 ~l~~l~~~~~~~~~   94 (127)
T cd08373          81 SLQDLVSEGLLEVT   94 (127)
T ss_pred             EhhHcccCCceEEE
Confidence            99998865554433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.57  E-value=1.5e-14  Score=112.46  Aligned_cols=101  Identities=33%  Similarity=0.452  Sum_probs=85.4

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF  239 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~  239 (276)
                      +.|.|+|++|++|+..+.. ..||||.+.+.     ....+|++++++.+|.|||+|.|.+..  ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999987766 89999999985     357899999999999999999999865  346799999999998


Q ss_pred             CCCceeEEEEEeCccccccccccCCCccCC
Q 023876          240 TTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      +.+++||++.++|+++... ....|..+.+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            8999999999999999854 3444544443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.53  E-value=6.2e-14  Score=105.74  Aligned_cols=79  Identities=28%  Similarity=0.532  Sum_probs=68.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEc-------C
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK-------D  237 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~-------~  237 (276)
                      |.|+|.+|++|..    .+||||++.+..     ...+|+++++|+||+|||.|.|.+.. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            5799999999963    589999998842     46899999999999999999999974 67999999998       4


Q ss_pred             CCCCCceeEEEEEeCc
Q 023876          238 TFTTDDFMGDAEIDIQ  253 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~  253 (276)
                      ..+.|+++|.+.+.|+
T Consensus        76 ~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          76 GEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccCcccEEEEEEEEEC
Confidence            6688999988887775

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.53  E-value=8.4e-14  Score=107.47  Aligned_cols=90  Identities=24%  Similarity=0.448  Sum_probs=77.6

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  247 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~  247 (276)
                      .|.|+|++|+.+.......+||||+++++++ ..+|++++++.||.|||.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~   81 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE   81 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence            5899999998444333338999999999877 8899999999999999999999864 4689999999999999999999


Q ss_pred             EEEeCccccccc
Q 023876          248 AEIDIQPLVTAA  259 (276)
Q Consensus       248 ~~l~l~~l~~~~  259 (276)
                      +.++|.++....
T Consensus        82 ~~i~l~~l~~~~   93 (125)
T cd04021          82 ASLDLSDILKNH   93 (125)
T ss_pred             EEEEHHHhHhhc
Confidence            999999988643

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=5.2e-14  Score=129.38  Aligned_cols=116  Identities=28%  Similarity=0.376  Sum_probs=98.8

Q ss_pred             ccchhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---
Q 023876          152 KNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---  224 (276)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---  224 (276)
                      ...+.+++...|+.....|.|+|++|++|+..+.. .+||||++++.   ..+.+|++.++++||+|||+|.|.+..   
T Consensus       151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l  230 (421)
T KOG1028|consen  151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL  230 (421)
T ss_pred             eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence            34556777789999999999999999999999954 79999999993   357899999999999999999999754   


Q ss_pred             CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ....|.++|||.|++++|++||++.++|..+........|.++
T Consensus       231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l  273 (421)
T KOG1028|consen  231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDL  273 (421)
T ss_pred             ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeecc
Confidence            5678999999999999999999999999888766654444443

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.50  E-value=2.3e-13  Score=106.40  Aligned_cols=91  Identities=24%  Similarity=0.454  Sum_probs=75.9

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------------CeeeccccccCCCCCeE-eeEEEEEeeCCCCcEEEEE
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALG-------------HQTVKTRVIKSNLNPVW-NESLMLSIPENIPPLKVLV  233 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------------~~~~~T~~~~~t~nP~w-~e~~~f~~~~~~~~L~i~v  233 (276)
                      ...|++++|++|+ ++.. .+||||++.+.             .+.++|+++++++||+| ||.|.|.+.. .+.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4578999999998 5555 99999999983             24689999999999999 9999999864 46899999


Q ss_pred             EEcCCCCC---CceeEEEEEeCccccccccc
Q 023876          234 YDKDTFTT---DDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       234 ~d~~~~~~---d~~lG~~~l~l~~l~~~~~~  261 (276)
                      ||++..++   +++||++.++|.++......
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~  110 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI  110 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccC
Confidence            99765443   79999999999999866443

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.50  E-value=1.4e-13  Score=103.79  Aligned_cols=86  Identities=29%  Similarity=0.544  Sum_probs=72.6

Q ss_pred             EEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeC-----CCCcEEEEEEEcCC
Q 023876          171 KVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDT  238 (276)
Q Consensus       171 ~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~~~L~i~v~d~~~  238 (276)
                      .+-.++|++|+..+.. .+||||++++..      ..++|+++++++||.|| .|.|.+..     ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            3456789999998877 899999998843      25899999999999999 57776532     25689999999999


Q ss_pred             CCCCceeEEEEEeCccccc
Q 023876          239 FTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~  257 (276)
                      +++|++||++.+++++|..
T Consensus        82 ~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          82 SGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhc
Confidence            9999999999999999973

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.45  E-value=8.1e-13  Score=102.09  Aligned_cols=91  Identities=32%  Similarity=0.595  Sum_probs=77.2

Q ss_pred             EEEEEEEeeecCCCCC--CC-CCCcEEEEEE------CCeeeccccccCCC-CCeEeeEEEEEeeCC-CCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRD--VM-TSDPYVILAL------GHQTVKTRVIKSNL-NPVWNESLMLSIPEN-IPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~--~~-~~dpyv~v~l------~~~~~~T~~~~~t~-nP~w~e~~~f~~~~~-~~~L~i~v~d~~  237 (276)
                      .|.|+|++|++|+..+  .. ..||||++++      +....+|+++.++. ||.|||+|.|.+... ...|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  33 8899999999      34568999988775 999999999998753 357999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      .. ++++||++.++|+++..+..
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~~  104 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGYR  104 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCceE
Confidence            88 89999999999999965543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.45  E-value=7.4e-13  Score=104.24  Aligned_cols=102  Identities=14%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC-C---C
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-F---T  240 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~-~---~  240 (276)
                      ....|.|.|++|++|+.++    +|||.+.+++.. .+|+++.++.||.|+|.|.|........|.|.||..+. .   .
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            3457999999999999866    899999999887 49999999999999999999865555779999986543 2   2


Q ss_pred             CCceeEEEEEeCccccccccccCCCccCCCC
Q 023876          241 TDDFMGDAEIDIQPLVTAARACETPISMSPC  271 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~~  271 (276)
                      ++++||.+.|++.++..+...+.|..+++..
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~  115 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK  115 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence            5789999999999999776666666655433

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.44  E-value=2.4e-13  Score=141.62  Aligned_cols=106  Identities=20%  Similarity=0.351  Sum_probs=91.6

Q ss_pred             cccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCC
Q 023876          162 AMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT  238 (276)
Q Consensus       162 ~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~  238 (276)
                      -+....|.|.|+|++|.+|. .++..+||||++.+|++ +.+|++++++.||+|||.|.|.+..  ...+|+|+|||+|.
T Consensus      1974 ~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1974 LLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             HHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            34567899999999999998 55569999999999976 7899999999999999999987765  44789999999999


Q ss_pred             CCCCceeEEEEEeCccccccccccCCCccCC
Q 023876          239 FTTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      +++ +.||.+.++|.++..++...++..+..
T Consensus      2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200       2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred             cCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence            955 499999999999998877777776664

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.43  E-value=8.7e-13  Score=93.85  Aligned_cols=80  Identities=33%  Similarity=0.651  Sum_probs=70.8

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~  244 (276)
                      |.|+|++|++|+..+.. ..+||+++.++.   ...+|++++++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999987766 899999999966   67999999999999999999999644 44569999999999998999


Q ss_pred             eEEEE
Q 023876          245 MGDAE  249 (276)
Q Consensus       245 lG~~~  249 (276)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN03008 Phospholipase D delta

Probab=99.42  E-value=5.2e-13  Score=128.53  Aligned_cols=83  Identities=29%  Similarity=0.520  Sum_probs=72.9

Q ss_pred             CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876          187 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       187 ~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      .+||||+|.++++ ..+|+++++++||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|.++..+.....|.
T Consensus        76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence            5699999999876 45999999999999999999999876679999999999997 589999999999999888777776


Q ss_pred             ccCCC
Q 023876          266 ISMSP  270 (276)
Q Consensus       266 ~~~~~  270 (276)
                      +++..
T Consensus       155 ~Ll~~  159 (868)
T PLN03008        155 PVLGA  159 (868)
T ss_pred             Ecccc
Confidence            66543

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.41  E-value=2.2e-12  Score=98.09  Aligned_cols=94  Identities=22%  Similarity=0.379  Sum_probs=72.3

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCCcee
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFM  245 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~~l  245 (276)
                      |.|+|++|++|+..  +.+||||+++++++ ..+|+++++ .||.|||+|.|.+..   ....|.|.+||.+..+.+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999987  68999999999875 479999988 999999999999876   234678888988877667777


Q ss_pred             EEEEEeCccccccccccCCCccC
Q 023876          246 GDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       246 G~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      |.+.+..  +..+.....|..+.
T Consensus        79 g~v~l~~--~~~~~~~~~w~~L~   99 (117)
T cd08383          79 GKVALSK--LDLGQGKDEWFPLT   99 (117)
T ss_pred             EEEEecC--cCCCCcceeEEECc
Confidence            7766554  43344444444443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.37  E-value=2.5e-12  Score=97.16  Aligned_cols=80  Identities=26%  Similarity=0.353  Sum_probs=66.7

Q ss_pred             CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccc-ccC
Q 023876          187 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR-ACE  263 (276)
Q Consensus       187 ~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~-~~~  263 (276)
                      .+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|.|||++.+ .+++||.+.++|+++..... ..+
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~   90 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQ   90 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccce
Confidence            6899999999875 5799999999999999999999876 356799999999998 89999999999999875433 334


Q ss_pred             CCcc
Q 023876          264 TPIS  267 (276)
Q Consensus       264 ~~~~  267 (276)
                      |..+
T Consensus        91 w~~L   94 (111)
T cd04052          91 WFPL   94 (111)
T ss_pred             eEEC
Confidence            4343

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.33  E-value=1.9e-11  Score=89.11  Aligned_cols=92  Identities=39%  Similarity=0.742  Sum_probs=80.5

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCe---eeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCce
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ---TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~---~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~~  244 (276)
                      |.|.|+.|++|...... ..+|||++.+...   ..+|+++.++.+|.||+.|.|.+... ...|.|+|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67899999999887764 7899999999764   78999999999999999999999775 7889999999998878899


Q ss_pred             eEEEEEeCccccccccc
Q 023876          245 MGDAEIDIQPLVTAARA  261 (276)
Q Consensus       245 lG~~~l~l~~l~~~~~~  261 (276)
                      +|.+.+++.++..+...
T Consensus        82 ~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       82 IGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             eEEEEEEHHHcccCccc
Confidence            99999999988765543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.31  E-value=2.6e-11  Score=93.85  Aligned_cols=92  Identities=29%  Similarity=0.402  Sum_probs=76.8

Q ss_pred             EEEEEEeeecCCCCCC--C---CCCcEEEEEEC---CeeeccccccCCCC--CeEeeEEEEEeeC---------------
Q 023876          170 IKVNVVKGTNLAVRDV--M---TSDPYVILALG---HQTVKTRVIKSNLN--PVWNESLMLSIPE---------------  224 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~--~---~~dpyv~v~l~---~~~~~T~~~~~t~n--P~w~e~~~f~~~~---------------  224 (276)
                      |+|.|.+|++++..+.  .   .+||||++.+.   ..+++|.+..+++|  |.||++|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7899999999765443  2   48999999984   35789999999999  9999999988644               


Q ss_pred             ---------CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccc
Q 023876          225 ---------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       225 ---------~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                               ....|.|+|||.|.+++|++||++.++|..+......
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~  127 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT  127 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence                     1346899999999999999999999999988866544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.3e-11  Score=113.56  Aligned_cols=100  Identities=33%  Similarity=0.509  Sum_probs=86.8

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--C---CeeeccccccCCCCCeEeeEEEEEeeC---C
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--G---HQTVKTRVIKSNLNPVWNESLMLSIPE---N  225 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~  225 (276)
                      +++...+.|+...|.|+|.|++|++|..++.. ..||||++++  +   ..+.+|.+.++++||+|||+|.|.++.   .
T Consensus       285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~  364 (421)
T KOG1028|consen  285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA  364 (421)
T ss_pred             ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence            35556678999999999999999999999988 8999999998  2   246799999999999999999999875   3


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      ...|.|+|||++.++.+++||.+.+....
T Consensus       365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  365 EVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             eeEEEEEEEEcccccccceeeEEEecCCC
Confidence            45789999999999999999998887764

>cd00030 C2 C2 domain

Probab=99.24  E-value=8.5e-11  Score=85.25  Aligned_cols=87  Identities=44%  Similarity=0.820  Sum_probs=77.7

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      |.|.|++|++|...... ..+|||.+.+.. ...+|.+...+.||.|++.|.|.+.. ....|.|+||+......+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            46899999999875545 899999999987 88899999999999999999999977 6678999999999888889999


Q ss_pred             EEEEeCcccc
Q 023876          247 DAEIDIQPLV  256 (276)
Q Consensus       247 ~~~l~l~~l~  256 (276)
                      .+.+++.++.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999887

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=4.2e-11  Score=111.00  Aligned_cols=95  Identities=33%  Similarity=0.595  Sum_probs=86.7

Q ss_pred             cccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC--
Q 023876          162 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT--  238 (276)
Q Consensus       162 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~--  238 (276)
                      |...+...++++|+.|.+|..+|.. .+||||.+.+++.+.+|+++...+||+|||.|+|++++..+.|++.|||.|.  
T Consensus       289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dl  368 (1283)
T KOG1011|consen  289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDL  368 (1283)
T ss_pred             cccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccH
Confidence            5567888999999999999999877 9999999999999999999999999999999999999999999999999874  


Q ss_pred             ---------CCCCceeEEEEEeCcccc
Q 023876          239 ---------FTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       239 ---------~~~d~~lG~~~l~l~~l~  256 (276)
                               ...|||+|++.+.+..|.
T Consensus       369 ksklrqkl~resddflgqtvievrtls  395 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLS  395 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEecc
Confidence                     256899999999988775

>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.16  E-value=5.6e-11  Score=107.13  Aligned_cols=100  Identities=20%  Similarity=0.339  Sum_probs=83.8

Q ss_pred             CeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHHH
Q 023876            3 DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSD   82 (276)
Q Consensus         3 ~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   82 (276)
                      +|+.+..|-|+|..|+|..|.|. .-+|||||+|.+++..|+..++. +||+.+.++|....+....-..+..+.+.-++
T Consensus        38 t~~~~~~g~fv~~~~sg~ls~l~-~ahRvksiSmttft~qevs~lQs-hgNq~~k~i~fkl~D~q~S~vPD~rn~~~~ke  115 (524)
T KOG0702|consen   38 TYVVYTVGSFVCTMCSGLLSGLN-PAHRVKSISMTTFTDQEVSFLQS-HGNQVCKEIWFKLFDFQRSNVPDSRNPQKVKE  115 (524)
T ss_pred             eEEEeeccceeeeccchhhccCC-CccccceeeeeeccccchHHHhh-cchhhhhhhhhcchhhhhccCCCcccchhhHH
Confidence            79999999999999999999995 45999999999999999999977 59999999999887765434444455566679


Q ss_pred             HHHHHHhcCccccCCcccccCCC
Q 023876           83 FIRRKYEKLEFFNFDEQALLCPY  105 (276)
Q Consensus        83 fI~~KY~~~~f~~~~~~~~~~~~  105 (276)
                      ||+.||+.++|+.+..+ ..-+.
T Consensus       116 f~q~~y~~kr~~v~~n~-~k~~s  137 (524)
T KOG0702|consen  116 FQQEKYVKKRYYVPKNQ-MKIPS  137 (524)
T ss_pred             HHhhhhccceeecCccc-ccccc
Confidence            99999999999987766 44433

>PLN02223 phosphoinositide phospholipase C

Probab=99.06  E-value=1.3e-09  Score=101.43  Aligned_cols=96  Identities=24%  Similarity=0.470  Sum_probs=78.3

Q ss_pred             eEEEEEEEeeecCCC-----CCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEE
Q 023876          168 GLIKVNVVKGTNLAV-----RDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYD  235 (276)
Q Consensus       168 g~L~V~v~~a~~L~~-----~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d  235 (276)
                      ..|.|+|+.|.+++.     .+.. ..||||+|.+.     ....+|.+..++.||+|||+|.|.+.. .-..|.|+|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            579999999998752     1222 68999999983     235677777788999999999999865 34568999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccccccC
Q 023876          236 KDTFTTDDFMGDAEIDIQPLVTAARACE  263 (276)
Q Consensus       236 ~~~~~~d~~lG~~~l~l~~l~~~~~~~~  263 (276)
                      +|..+.++|+|++.+|+..|..|.....
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~Vp  516 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGIRAVP  516 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCceeEe
Confidence            9998899999999999999998877653

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.04  E-value=4.4e-10  Score=110.53  Aligned_cols=102  Identities=36%  Similarity=0.538  Sum_probs=91.3

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEc
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK  236 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~  236 (276)
                      ...+.+-+|.|.|.+..|.+|+..+.. .+||||++.+.+. .++|+++++|+||+|||.+...+.. ..+.+.|.|+||
T Consensus      1032 ~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dw 1111 (1227)
T COG5038        1032 PVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDW 1111 (1227)
T ss_pred             cceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeec
Confidence            356788899999999999999999988 7999999999665 7899999999999999999999975 667899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccccc
Q 023876          237 DTFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       237 ~~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      |.-.+++.||.+.++|..+..+.+.
T Consensus      1112 d~~~knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038        1112 DSGEKNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred             ccCCCccccccccccHhhcCcCCcc
Confidence            9999999999999999988765443

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.94  E-value=3.5e-09  Score=104.32  Aligned_cols=98  Identities=30%  Similarity=0.546  Sum_probs=86.4

Q ss_pred             ccceeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEEC-CeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC
Q 023876          163 MVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT  238 (276)
Q Consensus       163 ~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~-~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~  238 (276)
                      .....|+|.|+|.+|++|...+.  . ..|||+++.+. ....+|+++++++||+|||+|...+..-.++|.|+|||++.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            56788999999999999998873  2 89999999984 34569999999999999999998888888999999999999


Q ss_pred             CCCCceeEEEEEeCcccccccc
Q 023876          239 FTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      +.+|+.+|.+.++|..|.....
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~  532 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPV  532 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccc
Confidence            9999999999999998875443

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.93  E-value=1.5e-09  Score=99.93  Aligned_cols=91  Identities=31%  Similarity=0.586  Sum_probs=83.8

Q ss_pred             eEEEEEEEeeecCCCCCCC--CCCcEEEEEECCeeeccccccCCCCCeEe-eEEEEEeeC---CCCcEEEEEEEcCCCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPE---NIPPLKVLVYDKDTFTT  241 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~~~~~T~~~~~t~nP~w~-e~~~f~~~~---~~~~L~i~v~d~~~~~~  241 (276)
                      |.|-|.|..||+||.+|..  ..|.||.+++++.+.+|.+..+++||.|| +.|.|++.+   ++++|.|.+.|+|..+.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            6788999999999999987  78999999999999999999999999999 568899976   67899999999999999


Q ss_pred             CceeEEEEEeCcccccc
Q 023876          242 DDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       242 d~~lG~~~l~l~~l~~~  258 (276)
                      +|-||.+.++++.|...
T Consensus        83 ndaigkv~i~idpl~~e   99 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLE   99 (1169)
T ss_pred             ccccceeeeccChHHHH
Confidence            99999999999988754

>PLN02952 phosphoinositide phospholipase C

Probab=98.91  E-value=9.3e-09  Score=97.50  Aligned_cols=96  Identities=26%  Similarity=0.448  Sum_probs=78.5

Q ss_pred             eeEEEEEEEeeecCCCC------CCC-CCCcEEEEEE-C----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEE
Q 023876          167 VGLIKVNVVKGTNLAVR------DVM-TSDPYVILAL-G----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLV  233 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~------~~~-~~dpyv~v~l-~----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v  233 (276)
                      ...|.|+|+.|.+++..      +.. ..||||+|.+ |    ..+.+|+++.++.||+|||+|.|.+.. ....|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            35799999999887531      111 3599999988 2    356789999999999999999998865 335689999


Q ss_pred             EEcCCCCCCceeEEEEEeCcccccccccc
Q 023876          234 YDKDTFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       234 ~d~~~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                      +|+|..+.++|+|++.++|..|..|....
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR~V  577 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIRSV  577 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCceeE
Confidence            99999889999999999999999888754

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.88  E-value=1.1e-08  Score=96.81  Aligned_cols=96  Identities=23%  Similarity=0.434  Sum_probs=78.5

Q ss_pred             eEEEEEEEeeecCCC---C---CCC-CCCcEEEEEE-C----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEE
Q 023876          168 GLIKVNVVKGTNLAV---R---DVM-TSDPYVILAL-G----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  234 (276)
Q Consensus       168 g~L~V~v~~a~~L~~---~---~~~-~~dpyv~v~l-~----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~  234 (276)
                      ..|.|+|+.|.+++.   .   +.. ..||||+|.+ |    ..+.+|++..++.||+|||+|.|.+.- .-..|+|.|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            579999999998642   1   122 5799999998 2    235688888889999999999998765 3467899999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccccC
Q 023876          235 DKDTFTTDDFMGDAEIDIQPLVTAARACE  263 (276)
Q Consensus       235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~  263 (276)
                      |+|..+.++|+|++.+|+..|..|..+..
T Consensus       549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~  577 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVSEIRQGIHAVP  577 (598)
T ss_pred             ECCCCCCCCEEEEEEcchHHhhCccceEe
Confidence            99998899999999999999998877653

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.85  E-value=2.1e-08  Score=94.74  Aligned_cols=96  Identities=22%  Similarity=0.359  Sum_probs=78.1

Q ss_pred             eEEEEEEEeeecCC----CC--CCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEE
Q 023876          168 GLIKVNVVKGTNLA----VR--DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  234 (276)
Q Consensus       168 g~L~V~v~~a~~L~----~~--~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~  234 (276)
                      ..|.|+|+.|.+++    ..  +.. ..||||+|.+-     ..+.+|+++.++.||+|||.|.|.+.. .-..|+|.|+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~  531 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH  531 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence            56899999998743    11  112 57999999982     346789999999999999999998765 3467899999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccccC
Q 023876          235 DKDTFTTDDFMGDAEIDIQPLVTAARACE  263 (276)
Q Consensus       235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~  263 (276)
                      |+|..+.++|+|++.+++..|..|..+..
T Consensus       532 d~D~~~~ddfigq~~lPv~~Lr~GyR~V~  560 (581)
T PLN02222        532 EYDMSEKDDFGGQTCLPVWELSQGIRAFP  560 (581)
T ss_pred             ECCCCCCCcEEEEEEcchhhhhCccceEE
Confidence            99988889999999999999998877653

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.82  E-value=1.7e-08  Score=74.00  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             EEEEEEeeecCCCCC---CC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCce
Q 023876          170 IKVNVVKGTNLAVRD---VM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       170 L~V~v~~a~~L~~~~---~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~  244 (276)
                      |.|+|..++++.-.+   +. .++|||.++++.. +.+|++.   .||.|||.|.|.+. ....+.|.|||+.. ...--
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            578999999997766   44 7899999999876 7888874   89999999999995 46789999999854 23446


Q ss_pred             eEEEEEeCcccccc
Q 023876          245 MGDAEIDIQPLVTA  258 (276)
Q Consensus       245 lG~~~l~l~~l~~~  258 (276)
                      +|..-+.|++|...
T Consensus        76 i~llW~~~sdi~Ee   89 (109)
T cd08689          76 VGLLWLRLSDIAEE   89 (109)
T ss_pred             eeeehhhHHHHHHH
Confidence            89999999988754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.81  E-value=9.2e-09  Score=96.60  Aligned_cols=99  Identities=22%  Similarity=0.341  Sum_probs=86.5

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCcee
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM  245 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~l  245 (276)
                      ..|.|+|.+|++|+..+.. ..||||.|.++. ...+|.++.+++.|-|.|.|.|.++..-.-|.|-|||+| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            3589999999999999887 899999999965 467999999999999999999999987788999999999 9999999


Q ss_pred             EEEEEeCccccccccccCCCcc
Q 023876          246 GDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       246 G~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      |.+.+.=++|......+.|..+
T Consensus        84 GKvai~re~l~~~~~~d~W~~L  105 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSL  105 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceec
Confidence            9999988888766544445443

>PLN02228 Phosphoinositide phospholipase C

Probab=98.78  E-value=5.1e-08  Score=91.97  Aligned_cols=97  Identities=21%  Similarity=0.366  Sum_probs=78.5

Q ss_pred             eEEEEEEEeeecCCC---CC---CC-CCCcEEEEEE-----CCeeeccccccCCCCCeE-eeEEEEEeeC-CCCcEEEEE
Q 023876          168 GLIKVNVVKGTNLAV---RD---VM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVW-NESLMLSIPE-NIPPLKVLV  233 (276)
Q Consensus       168 g~L~V~v~~a~~L~~---~~---~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w-~e~~~f~~~~-~~~~L~i~v  233 (276)
                      ..|.|+|+.|.+|+.   .+   .. ..||||+|.+     +..+.+|++++++.||+| +|.|.|.+.. .-..|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            469999999998731   11   12 4799999988     234578999988899999 9999999865 345789999


Q ss_pred             EEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          234 YDKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       234 ~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      +|+|..+.++|+|++.+++..|..|..+...
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL  541 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVRAVRL  541 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCeeEEEc
Confidence            9999888999999999999999988776543

>PLN02270 phospholipase D alpha

Probab=98.77  E-value=3e-08  Score=96.01  Aligned_cols=105  Identities=18%  Similarity=0.256  Sum_probs=87.0

Q ss_pred             ceeeEEEEEEEeeecCCCCC-----------------C--CCCCcEEEEEECCee-eccccccCC-CCCeEeeEEEEEee
Q 023876          165 EFVGLIKVNVVKGTNLAVRD-----------------V--MTSDPYVILALGHQT-VKTRVIKSN-LNPVWNESLMLSIP  223 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~-----------------~--~~~dpyv~v~l~~~~-~~T~~~~~t-~nP~w~e~~~f~~~  223 (276)
                      ..-|.|.|+|.+|++|+..+                 .  ..+||||.|.+++.+ .+|+++.+. .||.|+|+|.+.+.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            34588999999999998631                 1  156999999997754 599999875 69999999999998


Q ss_pred             CCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCCC
Q 023876          224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP  270 (276)
Q Consensus       224 ~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~  270 (276)
                      .....+.|+|.|.+.++. .+||.+.+++.+++.+.....|.+.++.
T Consensus        85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~  130 (808)
T PLN02270         85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN  130 (808)
T ss_pred             cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence            777899999999998865 5999999999999998877777666543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.76  E-value=2.4e-09  Score=100.67  Aligned_cols=93  Identities=28%  Similarity=0.480  Sum_probs=81.0

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-------eeeccccccCCCCCeEeeEEEEEeeC-----CCCcEEE
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKV  231 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-------~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~~~L~i  231 (276)
                      --...|.|.|+-|+++.+.|.+ .+||||++.++.       ..++|++++.|+||+|+|.|.|.++.     ....|.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            3345788889999999999988 999999999964       35799999999999999999999975     2457999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCccccc
Q 023876          232 LVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       232 ~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      +|.|+|-++.+||-|++.+.|.++..
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCCCC
Confidence            99999999999999999999988764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.75  E-value=2.4e-08  Score=94.98  Aligned_cols=98  Identities=22%  Similarity=0.406  Sum_probs=78.9

Q ss_pred             EEEEEEEeeecCCC-CCC---C-CCCcEEEEEEC-----Ceeecccc-ccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEc
Q 023876          169 LIKVNVVKGTNLAV-RDV---M-TSDPYVILALG-----HQTVKTRV-IKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK  236 (276)
Q Consensus       169 ~L~V~v~~a~~L~~-~~~---~-~~dpyv~v~l~-----~~~~~T~~-~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~  236 (276)
                      .|.|+|+.|.+++. .+.   . ..||||.|.+-     ....+|++ ..++-||.|+|+|.|.+.. .-.-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            69999999996644 222   2 68999999883     24578995 4567899999999999876 345789999999


Q ss_pred             CCCCCCceeEEEEEeCccccccccccCCCc
Q 023876          237 DTFTTDDFMGDAEIDIQPLVTAARACETPI  266 (276)
Q Consensus       237 ~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~  266 (276)
                      |..++|+|+|++.+|+..|..|..+..-..
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~  726 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLS  726 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeeeecC
Confidence            999999999999999999998887754333

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.70  E-value=5.3e-08  Score=92.78  Aligned_cols=93  Identities=24%  Similarity=0.438  Sum_probs=77.5

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----Cee-eccccccCCCCCeEe-eEEEEEeeC-CCCcEEEEEEEcCCC
Q 023876          168 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQT-VKTRVIKSNLNPVWN-ESLMLSIPE-NIPPLKVLVYDKDTF  239 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~-~~T~~~~~t~nP~w~-e~~~f~~~~-~~~~L~i~v~d~~~~  239 (276)
                      -.|.|.|+.||.|+..+.+...|||+|.+-     ..+ ++|.+..+.+||+|| |.|+|.+.+ .-..|+|.|+|.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            468899999999998777778899999882     233 455566678999999 999999977 446789999999999


Q ss_pred             CCCceeEEEEEeCcccccccc
Q 023876          240 TTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      +...|||++.+|+..+..+..
T Consensus      1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             CCcceeeeeecchhhhhccce
Confidence            999999999999988876644

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.34  E-value=4.3e-07  Score=88.43  Aligned_cols=94  Identities=31%  Similarity=0.409  Sum_probs=80.7

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCee--eccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCC
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFT  240 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~  240 (276)
                      .....+.|.|++|.+|.+.|.. ..|||+.+.+|++.  -+...+.+|+||+|.+.|.+...- ....++++|||+|.++
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            3445788999999999999987 99999999999876  477889999999999998887654 4567899999999999


Q ss_pred             CCceeEEEEEeCcccccc
Q 023876          241 TDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~  258 (276)
                      .|+.||++.++|++-...
T Consensus       690 ~d~~iget~iDLEnR~~T  707 (1105)
T KOG1326|consen  690 QDEKIGETTIDLENRWLT  707 (1105)
T ss_pred             ccchhhceehhhhhcccC
Confidence            999999999999865433

>PLN02964 phosphatidylserine decarboxylase

Probab=98.25  E-value=1.5e-06  Score=83.35  Aligned_cols=92  Identities=23%  Similarity=0.444  Sum_probs=77.3

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCCCCCcE-EEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVMTSDPY-VILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT  238 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~  238 (276)
                      .....+.|++.|++++|+    ++  ..|+| +.+.+|.+.++|.+.++|+||+||+...|.+.. .....+|.|||++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         47 VSAEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             eecccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            345678999999999986    33  24775 567889999999999999999999999999866 34457999999999


Q ss_pred             CCCCceeEEEEEeCcccccc
Q 023876          239 FTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~  258 (276)
                      ++.++++|.++++|.++...
T Consensus       121 ~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        121 LSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CCHHHhhhheeecHhhccHH
Confidence            99999999999998877644

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.14  E-value=1.8e-06  Score=85.39  Aligned_cols=100  Identities=23%  Similarity=0.271  Sum_probs=82.9

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEE
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVY  234 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~  234 (276)
                      ...+.|.|.|.-+++|+-..-+ .+||||+.++-     ..+.+|+++++|.||.|||.+.+....    ....|.++||
T Consensus      1521 Y~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1521 YNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred             EcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence            3478999999999999665555 89999999993     246799999999999999999887432    3468999999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccccCC
Q 023876          235 DKDTFTTDDFMGDAEIDIQPLVTAARACET  264 (276)
Q Consensus       235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~  264 (276)
                      ..+.+..+.++|.+.++|.++...++...|
T Consensus      1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~W 1630 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGW 1630 (1639)
T ss_pred             cccceeeeeeeeeeecchhhcchhhhhcce
Confidence            999998999999999999988766655444

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=2.8e-06  Score=73.86  Aligned_cols=99  Identities=24%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             chhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---
Q 023876          154 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---  224 (276)
Q Consensus       154 ~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---  224 (276)
                      .+.+...+.|.....-|.|+++++..|..+|.. .+||||.+++.     ..+.+|.+.+++++|+|+++|.|.+..   
T Consensus       219 rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL  298 (362)
T KOG1013|consen  219 RGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL  298 (362)
T ss_pred             ccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence            344444567777888899999999999999988 99999999983     246799999999999999999999866   


Q ss_pred             CCCcEEEEEEEcCCCCCCceeEEEEEeC
Q 023876          225 NIPPLKVLVYDKDTFTTDDFMGDAEIDI  252 (276)
Q Consensus       225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l  252 (276)
                      ....+.|.|||.+.....+++|-....+
T Consensus       299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  299 AYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             hcceEEEeecccCCCcCccCCCcccccc
Confidence            3457889999998877888888765543

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.08  E-value=3.3e-06  Score=79.83  Aligned_cols=95  Identities=18%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             EEEEEeeecCCCCCCCCCCcEEEEEECCe----eeccccccCCCCCeEeeEEEEEeeCC----------------CCcEE
Q 023876          171 KVNVVKGTNLAVRDVMTSDPYVILALGHQ----TVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPLK  230 (276)
Q Consensus       171 ~V~v~~a~~L~~~~~~~~dpyv~v~l~~~----~~~T~~~~~t~nP~w~e~~~f~~~~~----------------~~~L~  230 (276)
                      .+.++.++++.+...+.+|||+.+.....    ..+|++.+.|.+|.|+|.|.|.+...                ...|+
T Consensus       134 ~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ir  213 (800)
T KOG2059|consen  134 VCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIR  213 (800)
T ss_pred             hhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEE
Confidence            34445555665555557999999998543    46999999999999999999988542                23588


Q ss_pred             EEEEE-cCCCCCCceeEEEEEeCccccccccccCCC
Q 023876          231 VLVYD-KDTFTTDDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       231 i~v~d-~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      +.+|+ ++....++|+|++.+++..+........|.
T Consensus       214 v~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~  249 (800)
T KOG2059|consen  214 VDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY  249 (800)
T ss_pred             EeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence            99998 566667999999999998877433333333

>PLN02352 phospholipase D epsilon

Probab=97.89  E-value=4.8e-05  Score=74.02  Aligned_cols=96  Identities=17%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             eeeEEEEEEEeeecCCCC----CC-C-CCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCC-CcEEEEEEEcC
Q 023876          166 FVGLIKVNVVKGTNLAVR----DV-M-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENI-PPLKVLVYDKD  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~----~~-~-~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~-~~L~i~v~d~~  237 (276)
                      .-|.|.++|.+|+-+...    .. . ..+|||.|.+++.+ .+|   .+..||+|+|.|.+.+.... ..+.|+|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            457899999999733211    11 1 23999999997754 478   55669999999999987655 579999988  


Q ss_pred             CCCCCceeEEEEEeCcccccccc-ccCCCccCC
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAAR-ACETPISMS  269 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~-~~~~~~~~~  269 (276)
                         ...+||.+.+++.+|+.+.. .+.|.+.++
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~  112 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIM  112 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEccc
Confidence               26799999999999998866 555555543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.82  E-value=2.6e-06  Score=80.76  Aligned_cols=90  Identities=27%  Similarity=0.569  Sum_probs=71.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEE--C----C-------------------------eeeccccccCCCCCeEee
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILAL--G----H-------------------------QTVKTRVIKSNLNPVWNE  216 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~----~-------------------------~~~~T~~~~~t~nP~w~e  216 (276)
                      .+.|.+.+|.+|..++.. .+|||+...+  +    +                         -.+-|.+.++|+||.|+|
T Consensus       115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E  194 (1103)
T KOG1328|consen  115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE  194 (1103)
T ss_pred             HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence            355667788899888877 8999988765  1    0                         014578888999999999


Q ss_pred             EEEEEeeC-CCCcEEEEEEEcCCC---------------------------------CC---CceeEEEEEeCcccccc
Q 023876          217 SLMLSIPE-NIPPLKVLVYDKDTF---------------------------------TT---DDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       217 ~~~f~~~~-~~~~L~i~v~d~~~~---------------------------------~~---d~~lG~~~l~l~~l~~~  258 (276)
                      .|.|.+.+ ..+.+.+-+||+|.-                                 +.   |||+|.+.++|+++...
T Consensus       195 kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~  273 (1103)
T KOG1328|consen  195 KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD  273 (1103)
T ss_pred             heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc
Confidence            99999988 678899999998741                                 33   78999999999998754

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=4.4e-06  Score=72.66  Aligned_cols=103  Identities=21%  Similarity=0.345  Sum_probs=83.2

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC----
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE----  224 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~----  224 (276)
                      +...+.+.|..-...+.++|.+|.+|.+++.. ..|||+++.+..     .+.+|++..+++||.|+|...+....    
T Consensus        80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~  159 (362)
T KOG1013|consen   80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT  159 (362)
T ss_pred             cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence            33445566777778899999999999999988 899999998842     35788999999999999987765422    


Q ss_pred             CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      ....+.+.|.|.+.+..++++|+..|.+..|..
T Consensus       160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             hhhhhheeeccCcccccccCcccchhhhhccCh
Confidence            335678899999999999999999988776653

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.70  E-value=5.2e-05  Score=53.62  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             EEEEEeeecCCCCCCC--CCCcEEEE--EECC-eeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCC
Q 023876          171 KVNVVKGTNLAVRDVM--TSDPYVIL--ALGH-QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTD  242 (276)
Q Consensus       171 ~V~v~~a~~L~~~~~~--~~dpyv~v--~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d  242 (276)
                      -|+|+.+++|.-....  .+.-|++-  .+.+ ...+|.+.+...||+|.|+|.|.+..   +.-.|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            3678888888654433  33345542  3333 45789999999999999999998754   44568888887  55678


Q ss_pred             ceeEEEEEeCccccccccc
Q 023876          243 DFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       243 ~~lG~~~l~l~~l~~~~~~  261 (276)
                      +.||.+.+.++++-..+..
T Consensus        80 e~iG~~sL~l~s~geeE~~   98 (103)
T cd08684          80 RTIGECSLSLRTLSTQETD   98 (103)
T ss_pred             ceeeEEEeecccCCHHHhh
Confidence            8999999999988654433

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=2.3e-05  Score=69.36  Aligned_cols=108  Identities=20%  Similarity=0.291  Sum_probs=86.0

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV  233 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v  233 (276)
                      .......|.+.|.|++|++|..+...  .++|||+|++-  +   .+.+|+...+|++|.+-+...|.-......|.++|
T Consensus       262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv  341 (405)
T KOG2060|consen  262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTV  341 (405)
T ss_pred             hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEE
Confidence            35566788999999999999776544  78999999982  2   35689999999999999888888877778899999


Q ss_pred             EE-cCCCCCCceeEEEEEeCccccccc-cccCCCccC
Q 023876          234 YD-KDTFTTDDFMGDAEIDIQPLVTAA-RACETPISM  268 (276)
Q Consensus       234 ~d-~~~~~~d~~lG~~~l~l~~l~~~~-~~~~~~~~~  268 (276)
                      |. ..++..+.|+|.+.+-+.+|-... ....|..++
T Consensus       342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf  378 (405)
T KOG2060|consen  342 WGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF  378 (405)
T ss_pred             eccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence            94 667888889999999988887665 334444444

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.44  E-value=0.00056  Score=52.09  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=58.4

Q ss_pred             CCCcEEEEEE----CCeeeccccccCCCCCeEeeEEEEEeeC----------------CCCcEEEEEEEcCC--------
Q 023876          187 TSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIPE----------------NIPPLKVLVYDKDT--------  238 (276)
Q Consensus       187 ~~dpyv~v~l----~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------------~~~~L~i~v~d~~~--------  238 (276)
                      .-|+|+.+.+    ++...+|+++-++..|.|+..++|.++-                ....+.|+||+...        
T Consensus        32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            4589999986    4567899999999999999999997751                12368899998653        


Q ss_pred             --CCCCceeEEEEEeCccccccccc
Q 023876          239 --FTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       239 --~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                        ...|-+||.+.+|+.+|+.....
T Consensus       112 ~~~~~DilLG~v~IPl~~Ll~~rsG  136 (143)
T cd08683         112 IETSGDILLGTVKIPLRDLLTKRSG  136 (143)
T ss_pred             cCcCCcEEEEEEEeeHHHHhhcccC
Confidence              23455899999999999865543

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.34  E-value=3.8e-05  Score=75.34  Aligned_cols=87  Identities=24%  Similarity=0.385  Sum_probs=72.4

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC----------CCCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------~~~~L~i~v~d~~  237 (276)
                      .+++.|.+|+.|...+.. .+|||+.+.+-++.+.|.++..|+||.|+++..|.-..          ....+.|+|||.+
T Consensus       207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            456677888999888877 89999999999999999999999999999999985321          2345789999999


Q ss_pred             CCCCCceeEEEEEeCccc
Q 023876          238 TFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l  255 (276)
                      +.+.++|+|.......-+
T Consensus       287 r~g~~ef~gr~~~~p~V~  304 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPYVM  304 (1105)
T ss_pred             hhchHHhhcccccceEEE
Confidence            999999999987665433

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.24  E-value=0.00068  Score=63.31  Aligned_cols=87  Identities=25%  Similarity=0.483  Sum_probs=69.4

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEEC--C----eeeccccccCCCCCeEeeEEEEEee-----CCCCcEEEEEEEcC
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALG--H----QTVKTRVIKSNLNPVWNESLMLSIP-----ENIPPLKVLVYDKD  237 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~~T~~~~~t~nP~w~e~~~f~~~-----~~~~~L~i~v~d~~  237 (276)
                      ...-.++|++|..++.. .+|||..+.-.  .    ..++|.+++++++|.|.+ |.+...     +...++.|.+||++
T Consensus       138 ~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~  216 (529)
T KOG1327|consen  138 VVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD  216 (529)
T ss_pred             eeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccC
Confidence            33445668899999988 99999887652  2    357999999999999997 444432     24578999999999


Q ss_pred             CCCCCceeEEEEEeCccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~  257 (276)
                      .-++++++|.+..++..+..
T Consensus       217 ~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  217 SNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCCCcCceeEecccHHHhcc
Confidence            99999999999999988864

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.0015  Score=61.91  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~------~~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~  237 (276)
                      .++|.|+.|.+|.-...+...|||.|.+ |      +.+..|+...++-.|.+||+|+|-+...    ...|.|.|.|+-
T Consensus      1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred             eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence            5788889999997666557789999988 2      2356788888888899999999988652    346888898876


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      ....|..+|.+.+.|.++...+.
T Consensus      1206 FAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred             eecccceeeeeeeehhhHhhcCc
Confidence            66667899999999999875543

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.80  E-value=0.00067  Score=60.98  Aligned_cols=103  Identities=23%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC---C---------CCcE
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE---N---------IPPL  229 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~---------~~~L  229 (276)
                      ..|.+.|+++.+++.-..- -.|-|+.+.+     ..++.+|.+++.|.+|.|+|.|.+.+..   .         ..-+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            3466777888777654322 4567887766     2467899999999999999999998854   1         2358


Q ss_pred             EEEEEEcCC-CCCCceeEEEEEeCccccccccccCCCccCCC
Q 023876          230 KVLVYDKDT-FTTDDFMGDAEIDIQPLVTAARACETPISMSP  270 (276)
Q Consensus       230 ~i~v~d~~~-~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~  270 (276)
                      +|++|++.. +.+|.++|.+.+.|..|....+.++..+++.+
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG  488 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG  488 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence            999999876 45678999999999988877777776666544

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.10  E-value=0.064  Score=48.19  Aligned_cols=84  Identities=17%  Similarity=0.308  Sum_probs=70.2

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--------CCCcEEEEEEEcC-CCC
Q 023876          170 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKD-TFT  240 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--------~~~~L~i~v~d~~-~~~  240 (276)
                      +.|.|++|++.+...  ...-++..++++....|..+.++-.|.||..+..+++.        +..+|++++|.-+ .-+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            578999999998763  33456778889999999999999999999999888753        4578999999987 556


Q ss_pred             CCceeEEEEEeCccc
Q 023876          241 TDDFMGDAEIDIQPL  255 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l  255 (276)
                      ..+.+|.+-++|..+
T Consensus        80 ~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   80 KRESIGYVVLDLRSA   94 (340)
T ss_pred             cceeccEEEEEcccc
Confidence            778999999999988

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.03  E-value=0.014  Score=57.23  Aligned_cols=90  Identities=24%  Similarity=0.531  Sum_probs=68.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeeeccccccC-CCCCeEeeE-EEEEe--eCCCCcEEEEEE
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKS-NLNPVWNES-LMLSI--PENIPPLKVLVY  234 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~------~~~~~T~~~~~-t~nP~w~e~-~~f~~--~~~~~~L~i~v~  234 (276)
                      .++.|.|+|++|.-|..+..   ..||.|.+ |      ...++|++... +.||+|+|. |.|.-  -+.-..|+|.||
T Consensus       701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            34678999999988876653   58999987 2      24578888775 599999964 67752  234568999999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 023876          235 DKDTFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                      +..    ..+||+-.+++.-|..|..+.
T Consensus       778 eEg----gK~ig~RIlpvd~l~~GYrhv  801 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAGYRHV  801 (1189)
T ss_pred             ccC----CceeeeeccchhcccCcceeE
Confidence            864    469999999999988776543

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.52  E-value=0.13  Score=41.78  Aligned_cols=87  Identities=23%  Similarity=0.306  Sum_probs=59.2

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876          168 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  237 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~  237 (276)
                      ..+.|+|+.+.++...+ ...+-||.+.+  |.+.    ..|+.+.-...+.|||.+.|.+.-    ....|.|+||+..
T Consensus         8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            35788999998887611 24566777654  5543    355555445679999999998743    3457899999854


Q ss_pred             CCC----------------CCceeEEEEEeCccc
Q 023876          238 TFT----------------TDDFMGDAEIDIQPL  255 (276)
Q Consensus       238 ~~~----------------~d~~lG~~~l~l~~l  255 (276)
                      ...                .+..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            321                246899999998753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.46  E-value=0.15  Score=40.80  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeee----ccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEc
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQTV----KTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK  236 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~~----~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~  236 (276)
                      ...+.|+|+.+.++...+  ..+-||.+.+  |++..    .|..+.. .++.|||.+.|.+.-    ....|.|+||+.
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            345789999999887643  4678888765  55432    3443333 579999999998743    345799999986


Q ss_pred             CCCC----CCceeEEEEEeCccc
Q 023876          237 DTFT----TDDFMGDAEIDIQPL  255 (276)
Q Consensus       237 ~~~~----~d~~lG~~~l~l~~l  255 (276)
                      ....    ....+|.+.++|-+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5321    224699999998753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.40  E-value=0.13  Score=40.82  Aligned_cols=87  Identities=18%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCC
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  238 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~  238 (276)
                      .+.|++....++...+....+-||.+.+  |++.    ..|.......++.|||.+.|.+.-    ....|.|+||+.+.
T Consensus         9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~   88 (156)
T cd08380           9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE   88 (156)
T ss_pred             CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence            4667777766665422224566776655  5432    233333333679999999998643    34579999999765


Q ss_pred             CC--CCceeEEEEEeCccc
Q 023876          239 FT--TDDFMGDAEIDIQPL  255 (276)
Q Consensus       239 ~~--~d~~lG~~~l~l~~l  255 (276)
                      .+  .+..||.+.++|-+.
T Consensus        89 ~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          89 PGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             CCCCcceEEEEEeEEeEcc
Confidence            43  467899999998753

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.86  E-value=0.15  Score=40.53  Aligned_cols=94  Identities=14%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             eeEEEEEEEeeecCCCCCC---C--CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC--------------CC
Q 023876          167 VGLIKVNVVKGTNLAVRDV---M--TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN--------------IP  227 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~--------------~~  227 (276)
                      .-.|+|+|..++-....-.   .  .+-..+-+.+++|.++|+.+..+.+|.|+|.|.|+++..              .+
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~   87 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD   87 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence            3467888887764322111   1  223344456699999999999999999999999998652              24


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      +|.+-|..-+..+...++|.-.++-..++....
T Consensus        88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~  120 (156)
T PF15627_consen   88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN  120 (156)
T ss_pred             ceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence            688888877776666889998888877765444

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.76  E-value=0.15  Score=40.81  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          187 TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       187 ~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      .++.||.+.+  +++.    ..|..+.-+..+.|||.+.|.+.-    ....|.|+||+....+....+|.+.++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3556666544  3332    244444445668899999998753    3457999999987655677999999998754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.98  E-value=0.3  Score=39.57  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeee----cccccc----CCCCCeEeeEEEEEeeC----CCCcEEE
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV----KTRVIK----SNLNPVWNESLMLSIPE----NIPPLKV  231 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~~----~T~~~~----~t~nP~w~e~~~f~~~~----~~~~L~i  231 (276)
                      ...+.|+|..+.+++..... ..+-|+.+.+  |.+..    .|+...    -...+.|||.+.|.+.-    ....|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            44678889999888775543 5778887755  55432    333221    12357799999998743    2356999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEeCccc
Q 023876          232 LVYDKDTFT---------TDDFMGDAEIDIQPL  255 (276)
Q Consensus       232 ~v~d~~~~~---------~d~~lG~~~l~l~~l  255 (276)
                      +||+.....         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999865443         356899999998764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=93.68  E-value=0.15  Score=44.70  Aligned_cols=82  Identities=23%  Similarity=0.305  Sum_probs=60.7

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEc
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK  236 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~  236 (276)
                      ...+...|+|++.++.+++|.....  + ..+.||++....+ +.+|.+....+.-.|.|.|..++.. ...+.+.||.|
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW  122 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSW  122 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeec
Confidence            3455678999999999999965433  4 6789999988665 4567666566667899999888764 45788889988


Q ss_pred             CCCCCCc
Q 023876          237 DTFTTDD  243 (276)
Q Consensus       237 ~~~~~d~  243 (276)
                      +.-.++.
T Consensus       123 ~pq~RHK  129 (442)
T KOG1452|consen  123 PPQRRHK  129 (442)
T ss_pred             Cchhhcc
Confidence            7644444

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.72  E-value=0.77  Score=35.81  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             ccccccCC-CCCeEeeEEEEEeeC----CCCcEEEEEEEcCCCCCC----ceeEEEEEeCccc
Q 023876          202 KTRVIKSN-LNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTD----DFMGDAEIDIQPL  255 (276)
Q Consensus       202 ~T~~~~~t-~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~d----~~lG~~~l~l~~l  255 (276)
                      .|.....+ .++.|||.+.|.+.-    ....|.|+||+.+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            45555555 789999999998743    345799999997765544    6999999998754

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.26  E-value=1.2  Score=36.27  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=52.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCee---eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT---VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  237 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~---~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~  237 (276)
                      ..+.|+|..+.. +..+.. ...-||.+.+  |+..   .+|....-+.++.|||.+.|.+.-    ....|.|+||+..
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            356677777653 222211 2335565544  4432   245555556679999999998743    2456999999852


Q ss_pred             CC----------------CCCceeEEEEEeCcc
Q 023876          238 TF----------------TTDDFMGDAEIDIQP  254 (276)
Q Consensus       238 ~~----------------~~d~~lG~~~l~l~~  254 (276)
                      ..                ..+..||.+.+.|-+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            21                125678889888865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=92.01  E-value=0.34  Score=45.77  Aligned_cols=61  Identities=31%  Similarity=0.606  Sum_probs=48.2

Q ss_pred             eeccccccCCCCCeEeeEEEEEee-CCCCcEEEEEEEcCC----CCCCceeEEEEEeCcccccccc
Q 023876          200 TVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----FTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       200 ~~~T~~~~~t~nP~w~e~~~f~~~-~~~~~L~i~v~d~~~----~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      ..+|.++.+.+||.|-+.|.+... +..+.|++.++|-+.    ...++|+|++...+..+.....
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~  107 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG  107 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence            358999999999999998876653 355789999998654    4667899999999998875433

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=91.17  E-value=2.8  Score=34.50  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=39.4

Q ss_pred             eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCC-C-CceeEEEEEeC
Q 023876          200 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT-T-DDFMGDAEIDI  252 (276)
Q Consensus       200 ~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~-~-d~~lG~~~l~l  252 (276)
                      .++|.+..++.+|.|+|++.+.++.   ...-|.|++++...-. . ...+|-+-++|
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            4688888899999999999999875   3456888887643221 1 25688888887

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=90.45  E-value=5.8  Score=32.31  Aligned_cols=54  Identities=19%  Similarity=0.235  Sum_probs=32.9

Q ss_pred             eccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCC-C--CceeEEEEEeCcc
Q 023876          201 VKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT-T--DDFMGDAEIDIQP  254 (276)
Q Consensus       201 ~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~-~--d~~lG~~~l~l~~  254 (276)
                      ..|.+.-++.+|.|+|+|.+.++.   ...-|.|++++...-. .  ...+|.+.++|-+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            466677778899999999999976   2346889999854322 1  1689999999976

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=89.36  E-value=4.8  Score=31.06  Aligned_cols=87  Identities=17%  Similarity=0.252  Sum_probs=56.8

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCee---eccccccC-CCCCeEeeEEEEEeeC---------CCCcEEEEEEE
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQT---VKTRVIKS-NLNPVWNESLMLSIPE---------NIPPLKVLVYD  235 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~---~~T~~~~~-t~nP~w~e~~~f~~~~---------~~~~L~i~v~d  235 (276)
                      .+.|.|.+..+++..   ....|+.+..+...   ..|..... +..-.|++.|.+.+.-         ....++|.|+.
T Consensus         8 ~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~   84 (143)
T PF10358_consen    8 QFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE   84 (143)
T ss_pred             EEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence            467888888877762   23445556555543   34444332 3457899999887631         22358889988


Q ss_pred             cCCCCCCceeEEEEEeCcccccc
Q 023876          236 KDTFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       236 ~~~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      ...-+....+|.+.++|+++...
T Consensus        85 ~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   85 VDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             ecCCCccceEEEEEEEHHHhhCc
Confidence            64333336899999999998864

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=88.60  E-value=0.09  Score=52.43  Aligned_cols=56  Identities=23%  Similarity=0.323  Sum_probs=43.7

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhh
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKY   60 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~   60 (276)
                      -.|+++|+.+-+|+.|+++|+.++.+++...++.|++..+  |...-..|++ .++..+
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~-plh~~~  697 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRT-PLHHAT  697 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCC-cchhhh
Confidence            3699999999999999999999999999999998888777  4444445444 444333

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=88.35  E-value=2  Score=30.85  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=45.2

Q ss_pred             CCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          188 SDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       188 ~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      .+..+++.+++. ...|..... .+..|++.|.+++.. ...|.|.||-+|-   ..+-|-..+.|++.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            466678888764 456666543 578999999999976 4689999998764   23456666777763

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=87.89  E-value=7.4  Score=32.18  Aligned_cols=55  Identities=13%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             eeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCC-C---CCceeEEEEEeCc
Q 023876          199 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF-T---TDDFMGDAEIDIQ  253 (276)
Q Consensus       199 ~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~-~---~d~~lG~~~l~l~  253 (276)
                      ...+|.+.-++.+|.|+|++.+.++.   ...-|.|++++...- .   ....+|-+-++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            35678888889999999999999865   345688888774321 1   1246888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=85.59  E-value=5.2  Score=32.20  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CCCcEEEEEECCee-eccccccCC--CCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          187 TSDPYVILALGHQT-VKTRVIKSN--LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       187 ~~dpyv~v~l~~~~-~~T~~~~~t--~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      ...-|+++.++++. .+|....-+  ..-.|+|.|.+.+..-.+.|.|+||.... ..+..|+++.+++-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            34567788886654 355444332  33467888888888777899999999877 678899999999865443

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.35  E-value=7.6  Score=28.25  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  237 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~  237 (276)
                      +.+.+....+....... ..+-||.+.+  |++.    ..|..+.-...+.|||.+.|.+.-    ....|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            34455555555443322 2467777755  5443    244444445568999999998643    3456899999853

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		3e-20
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		9e-16
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-15
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-15
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-15
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		8e-15
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		8e-15
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		6e-11
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-10
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		3e-10
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		8e-10
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		2e-09
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		5e-09
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		9e-09
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-07
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		2e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-07
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		2e-07
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		3e-07
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		4e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-06
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		6e-06
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		7e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		3e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		1e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-04
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-04
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-04
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-04
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-04
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-04
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-04
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		4e-04
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		4e-04

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P
Sbjct: 42  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 100
Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              ++P  +  ++    FIR KYEK ++ +
Sbjct: 101 ETFRRPQIDPAVE---GFIRDKYEKKKYMD 127

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P
Sbjct: 44  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLP 102
Query: 66  GNLKKPSPNSFID 78
            N ++P  +  ++
Sbjct: 103 ENFRRPQTDQAVE 115

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E+ GN+ +N+ YEA   
Sbjct: 60  SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66  G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              +KKP P+    E+  +I  KY + +F  
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E+ GN+ +N+ YEA   
Sbjct: 60  SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66  G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              +KKP P+    E+  +I  KY + +F  
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E+ GN+ +N+ YEA   
Sbjct: 60  SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66  G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
              +KKP P+    E+  +I  KY + +F  
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 3   DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
           D  S + GVFIC+ CSGIHR++   +SKV SV+LD W   QV+ +A   GN A   ++E+
Sbjct: 46  DWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASH-GNDAARARFES 103
Query: 63  YTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHR 110
             P    +P+P+     R  +IR KYE+ EF   ++Q    PY A +R
Sbjct: 104 KVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE---PYSAGYR 148

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 3   DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
           D  S + GVFIC+ CSGIHR++   +SKV SV+LD W   QV+ +A   GN A   ++E+
Sbjct: 48  DWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASH-GNDAARARFES 105
Query: 63  YTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHR 110
             P    +P+P+     R  +IR KYE+ EF   ++Q    PY A +R
Sbjct: 106 KVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE---PYSAGYR 150

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 221
           +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++  
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 222 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
           +      L   V+D++  T DDF+G  ++ + PL T     E P + 
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTF 127

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 221
           +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++  
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 222 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
           +      +   V+D++  T DDF+G  ++ + PL T     E P + 
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF 115

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 9/78 (11%)
Query: 3   DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
           D  S++ G+F+CI CSG+HRSLGVHIS V S+K+D +T+EQ+  + + G     NKK + 
Sbjct: 34  DWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGG-----NKKCQT 88
Query: 63  YTPGNLKKPSPNSFIDER 80
           Y    L+    + FI ER
Sbjct: 89  Y----LENYGISDFIPER 102

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILAL-------GHQTVKTRVIKSNLNPVWNESLML 220
           +++V VV G +LA +D+   SDPYV L+L           V+T+ IK  LNP WNE    
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 221 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
            +  +   L   V+D++  T DDF+G  ++ +  L T     E P + 
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTF 129

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + G+  CI+CSGIHR LGVH S++ S+ LD     ++  LA+  GN   N+  E   P
Sbjct: 32  STNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSEL-LLAKNIGNAGFNEIMECCLP 90
Query: 66  G-NLKKPSPNSFIDERSDFIRRKY 88
             +  KP+P S +  R D+I  KY
Sbjct: 91  SEDPVKPNPGSDMIARKDYITAKY 114

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 167 VGLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
           +G + V+V++ T L A +    S+PY  +++G Q+  TR I+  LNP WN +    I + 
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 226 IPPLKVL-VYDKDTFTTDDFMGDAEIDIQPLVTAARA 261
              +  L ++D+D F+ DDF+G  EI +  + T   +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GV  CI+CSG+HR LGV  S++ S+ LD     ++  LA   GN + N+  EA  P
Sbjct: 57  STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLP 115
Query: 66  GNLK-KPSPNSFIDERSDFIRRKYEKLEF 93
            +   KPS  S +  R D+I  KY +  F
Sbjct: 116 SHGGPKPSAESDMGTRRDYIMAKYVEHRF 144

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GV  CI+CSG+HR LGV  S++ S+ LD     ++  LA   GN + N+  EA  P
Sbjct: 38  STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLP 96
Query: 66  GNLK-KPSPNSFIDERSDFIRRKYEKLEF 93
            +   KPS  S +  R D+I  KY +  F
Sbjct: 97  SHGGPKPSAESDMGTRRDYIMAKYVEHRF 125

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
           V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN+     I
Sbjct: 9   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC 262
            +    L+V V+D+D     DF+G   I +  +      C
Sbjct: 69  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNC 108

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 168 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN 225
           G ++V +V    L   D + + DPYV L    Q  K+ V +     P WNE+ + ++ E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
              LK  ++DKD  T DD +G+A I ++P+
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPV 99

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 6  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGN 53
          S++ GVF+CI CSG+HRSLGVH+S + S +LD  W   Q+  + ++GGN
Sbjct: 52 SITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGN 99

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 6  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
          S++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct: 52 SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 98

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAY 63
           S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN + +  +  +
Sbjct: 44  SITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASASSFFHQH 101

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 6  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
          S++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct: 53 SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 99

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 170 IKVNVVKGTNLAVRD-VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP 228
           I + VV    L  +D   +SDPYV + +G    +T+ I  NLNPVW E+       +   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 229 LKVLVYDKD-----------TFTTDDFMGDAEIDIQPL 255
           +KV V D+D              +DDF+G   I+++ L
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 240
           SDPYV L L          KT+ IKS+LNP WNE+    + E+     L V ++D D  +
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 241 TDDFMGDAEIDIQPLVTAA 259
            +DFMG     I  L  A 
Sbjct: 253 RNDFMGSLSFGISELQKAG 271

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 6  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
          SLS  VFIC+ CS  HR +GVHIS V S  LD++T  Q+    ++GGN
Sbjct: 51 SLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQL-VRMDIGGN 97

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI- 222
           I V V +  NL   D    SDPYV L L          KTR +K+ LNPVWNE+ + ++ 
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 223 PENIP-PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258
           P ++   L V V+D D  + +DFMG     +  L+ A
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 240
           SDPYV L L          KT+ IK +LNP WNE+    + E+     L V ++D D  +
Sbjct: 52  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 241 TDDFMGDAEIDIQPLVTAA 259
            +DFMG     I  L  A 
Sbjct: 112 RNDFMGSLSFGISELQKAG 130

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 38  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 241 TDDFMGDAEIDIQPLV 256
            +DFMG     +  L+
Sbjct: 98  RNDFMGSLSFGVSELM 113

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 37  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 96
Query: 241 TDDFMGDAEIDIQPLV 256
            +DFMG     +  L+
Sbjct: 97  RNDFMGSLSFGVSELM 112

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
           + V ++K   L  +D   TSDP+V + L       ++T+V + NLNP WNE+ +    E 
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF---EG 84
Query: 226 IPPLKVL-------VYDKDTFTTDDFMGDAEIDI 252
            P  KV+       V D D F+ +D +G+  I +
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 167 VGLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLML 220
            GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+ 
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 221 SI-PENIP--PLKVLVYDKDTFTTDDFMG 246
            + PE++    L + V D D    ++ +G
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIG 239

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 167 VGLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLML 220
            GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+ 
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 221 SI-PENIP--PLKVLVYDKDTFTTDDFMG 246
            + PE++    L + V D D    ++ +G
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIG 240

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 39  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 98
Query: 241 TDDFMGDAEIDIQPL 255
            +DF G     +  L
Sbjct: 99  RNDFXGSLSFGVSEL 113

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 23  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
             K L   VYD D F+  D +G+ ++
Sbjct: 83  AGKTLVMAVYDFDRFSKHDIIGEFKV 108

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 60/105 (57%), Gaps = 19/105 (18%)
Query: 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL----GHQTV----------KTRVIKSNLN 211
           +G + +++++  NL  RD    SDP+V + L    G   V          +T+ ++ +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 212 PVWNESLM---LSIPENIPP-LKVLVYDKDTFTTDDFMGDAEIDI 252
           P WN++++   +S+ + +   L+V V+D D F+++DF+G+  ID+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-----NLNPVWNESLMLSIP 223
           I VN++K  NL   D+  TSDPYV + L ++  +    K+     NLNP++NES    IP
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 224 -ENIPPLKVL--VYDKDTFTTDDFMG 246
            E +    ++  V DKD  + +D +G
Sbjct: 78  TEKLRETTIIITVMDKDKLSRNDVIG 103

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 21  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
             K L   VYD D F+  D +G+ ++
Sbjct: 81  GGKTLVMAVYDFDRFSKHDIIGEFKV 106

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
             K L   VYD D F+  D +G+ ++
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
             K L   VYD D F+  D +G+ ++
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 238
           +DPYV L L         ++T+ +++  NPVWNE+L    I E       L++ V D+D 
Sbjct: 50  ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 239 FTTDDFMGDAEIDIQPLVTAAR 260
           F  ++F+G+    ++ L    R
Sbjct: 110 FGHNEFIGETRFSLKKLKANQR 131

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 46  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
             K L   VYD D F+  D +G+ ++
Sbjct: 106 GGKTLVMAVYDFDRFSKHDIIGEFKV 131

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 238
           +DPYV L L         ++T+ +++  NPVWNE+L    I E       L++ V D+D 
Sbjct: 48  ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 239 FTTDDFMGDAEIDIQPLVTAAR 260
           F  ++F+G+    ++ L    R
Sbjct: 108 FGHNEFIGETRFSLKKLKANQR 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	9e-40
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	3e-38
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	4e-38
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-38
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-35
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	8e-35
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-35
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	1e-34
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-34
2owa_A	138	Arfgap-like finger domain containing protein; zinc	3e-33
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-33
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	9e-32
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-31
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-31
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	6e-30
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-29
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	6e-29
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-26
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	5e-25
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	8e-25
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	2e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-24
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-23
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-22
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-20
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-20
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-19
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	6e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-16
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-15
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-18
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	4e-18
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-18
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	9e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-16
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-16
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-16
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	5e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-15
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-14
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-14
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-10
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-09
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  133 bits (338), Expect = 9e-40
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWN 215
           ++     V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 216 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 259
           +     I +    L+V V+D+D     DF+G   I +  +    
Sbjct: 62  KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  130 bits (328), Expect = 3e-38
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P
Sbjct: 42  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 100

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEF 93
              ++P  +        FIR KYEK ++
Sbjct: 101 ETFRRPQIDP---AVEGFIRDKYEKKKY 125

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  130 bits (328), Expect = 4e-38
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P
Sbjct: 44  SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLP 102

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEF 93
            N ++P  +        FIR KYEK ++
Sbjct: 103 ENFRRPQTD---QAVEFFIRDKYEKKKY 127

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  135 bits (341), Expect = 9e-38
 Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 7/155 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E+ GN+ +N+ YEA   
Sbjct: 60  SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118

Query: 66  -GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDK 124
              +KKP P+    E+  +I  KY + +F        L                     K
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFL-----TKLPEIRGRRGGRGRPRGQPPVPPK 173

Query: 125 KHYEKQATRHRIGIAFRNSWGRKESESKNSKKANS 159
                +    R      +             +A+ 
Sbjct: 174 PSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASG 208

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  127 bits (322), Expect = 3e-37
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE 224
            G ++V +V    L   D +   DPYV L    Q  K+ V +     P WNE+ + ++ E
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
               LK  ++DKD  T DD +G+A I ++P+     
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS 104

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  124 bits (312), Expect = 1e-35
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLN 211
            L+   E   +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LN
Sbjct: 11  GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLN 70

Query: 212 PVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPC 271
           P WNE ++  +      L   V+D++  T DDF+G  ++ + PL T     E P +    
Sbjct: 71  PKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130

Query: 272 NL 273
            L
Sbjct: 131 VL 132

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  121 bits (306), Expect = 8e-35
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP---- 223
           G+++V V   +N+        DP V +    +  KT+ + + LNPVWNE L   +     
Sbjct: 7   GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 256
           +    L ++V D +T   +  +G A + ++ L 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLT 99

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  126 bits (317), Expect = 8e-35
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GV  CI+CSG+HR LGV  S++ S+ LD     ++     M GN + N+  EA  P
Sbjct: 57  STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM-GNTSFNEVMEAQLP 115

Query: 66  GNLKK-PSPNSFIDERSDFIRRKYEKLEF 93
            +    PS  S +  R D+I  KY +  F
Sbjct: 116 SHGGPKPSAESDMGTRRDYIMAKYVEHRF 144

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  127 bits (321), Expect = 1e-34
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GVFIC+ CSGIHR++   +SKV SV+LD W   QV+      GN A   ++E+  P
Sbjct: 49  SYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVE-FMASHGNDAARARFESKVP 106

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKK 125
               +P+P+     R  +IR KYE+ EF                +   S+        K+
Sbjct: 107 SFYYRPTPSDCQLLREQWIRAKYERQEF-----------IYPEKQEPYSAGYREGFLWKR 155

Query: 126 HYEKQATRHRIGIAFRNSWGRKESESKNSK 155
             +      R  +        K     ++K
Sbjct: 156 GRDNGQFLSRKFVLTEREGALKYFNRNDAK 185

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  124 bits (313), Expect = 2e-34
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + G+  CI+CSGIHR LGVH S++ S+ LD     ++  LA+  GN   N+  E   P
Sbjct: 32  STNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELL-LAKNIGNAGFNEIMECCLP 90

Query: 66  GNLKK-PSPNSFIDERSDFIRRKYEKLEF 93
                 P+P S +  R D+I  KY +  +
Sbjct: 91  SEDPVKPNPGSDMIARKDYITAKYMERRY 119

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  117 bits (295), Expect = 3e-33
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           SLS  VFIC+ CS  HR +GVHIS V S  LD++T  Q+  + ++GGN      ++    
Sbjct: 51  SLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRM-DIGGNGRARNYFKQVLG 109

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEK 90
            N    +     +  S    R+Y++
Sbjct: 110 VNFSPKT----KEYASSICGRQYKQ 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  118 bits (296), Expect = 5e-33
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLM 219
             +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 220 LSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 265
             +      +   V+D++  T DDF+G  ++ + PL T     E P
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score =  113 bits (285), Expect = 9e-32
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           +++ G F+C  CSG  R L     +V S+ +  +T ++++ L +  GN    + +     
Sbjct: 40  NMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKH-GNEVCKQIWLGLFD 97

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTS 118
                        +  +F++ KYEK  ++           P    +  +S  +
Sbjct: 98  DRSSAIPDFRDPQKVKEFLQEKYEKKRWYV----------PPEQAKVVASVHA 140

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  114 bits (287), Expect = 1e-31
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 140 FRNSWGRKESESKNSKKANS---LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILA 195
             +S GR+    +    + S    +  +     +++ V+       +       PYV + 
Sbjct: 5   HHHSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVT 64

Query: 196 LGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
           +  Q+ KT    +  +P W + L + +      L   V+   T  +D  +G A +DI   
Sbjct: 65  VDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDVLLGTAALDIYET 123

Query: 256 VTAARAC 262
           + +    
Sbjct: 124 LKSNNMK 130

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  113 bits (285), Expect = 1e-31
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 154 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNP 212
           + K + L    ++   I + VV    L  +D   +SDPYV + +G    +T+ I  NLNP
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNP 62

Query: 213 VWNESLMLSIPENIPPLKVLVYDKD-----------TFTTDDFMGDAEIDIQPL 255
           VW E+       +   +KV V D+D              +DDF+G   I+++ L
Sbjct: 63  VWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  109 bits (274), Expect = 6e-30
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ G+F+CI CSG+HRSLGVHIS V S+K+D +T+EQ+  + + GGN       E Y  
Sbjct: 37  SVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYI-DKGGNKKCQTYLENYGI 95

Query: 66  GNLKKPS-PNSFIDER-SDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHD 123
            +        +   +     +R     ++         L    +      + + + ++ +
Sbjct: 96  SDFIPERKYRTKAADHYRKILRSIVHNVD---PPAPLPLDEGKSLINYGRNENVNENNKN 152

Query: 124 KK 125
           + 
Sbjct: 153 QY 154

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  108 bits (270), Expect = 1e-29
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 163 MVEFVGLIKVNVVKGTNLAVRDVM------------TSDPYVILALGHQTV-KTRVIKSN 209
           MV F GL+K+ + +  +L                    DPY+ L +    + +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 210 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 259
            +P W++  +  +  N   +++ V+       DDF+ +  I  + L+   
Sbjct: 61  NSPAWHDEFVTDVC-NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =  106 bits (266), Expect = 6e-29
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN    +  E+   
Sbjct: 53  SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKFREFLESQED 111

Query: 66  GNLKKPSPNSFIDERSDFIRRKYEKL 91
            +        +    +   R K   L
Sbjct: 112 YDPCWSLQEKYNSRAAALFRDKVVAL 137

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  106 bits (267), Expect = 2e-26
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + GV  CI+CSG+HR LGV  S++ S+ LD     ++  LA   GN + N+  EA  P
Sbjct: 38  STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLP 96

Query: 66  GN-LKKPSPNSFIDERSDFIRRKYEKLEF 93
            +   KPS  S +  R D+I  KY +  F
Sbjct: 97  SHGGPKPSAESDMGTRRDYIMAKYVEHRF 125

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 96.6 bits (240), Expect = 5e-25
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 142 NSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV-----------MTSDP 190
           +S       S    + +     ++F G ++V + +   L                   DP
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62

Query: 191 YVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAE 249
           Y+ +++    V +T   +    P +NE    ++ +    L++ V+ +     D F+ +  
Sbjct: 63  YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLGYDHFVANCT 121

Query: 250 IDIQPLVTAARACET 264
           +  Q L+    A +T
Sbjct: 122 LQFQELLRTTGASDT 136

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score = 95.8 bits (238), Expect = 8e-25
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYT 64
           S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN + +  +  + 
Sbjct: 44  SITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASASSFFHQHG 102

Query: 65  PGNLK-KPSPNSFIDERSDFIRRKYEKL 91
                     NS     +   R K + L
Sbjct: 103 CSTNDTNAKYNS---RAAQLYREKIKSL 127

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score = 95.0 bits (236), Expect = 2e-24
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYT 64
           S++ GVF+CI CSG+HRSLGVH+S + S +LD  W   Q+  + ++GGN      +  + 
Sbjct: 52  SITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGNANATAFFRQHG 110

Query: 65  PGNLKKPS-PNSFIDERSDFIRRKYEKL 91
                  +  NS     +   R K  +L
Sbjct: 111 CTANDANTKYNSRA---AQMYREKIRQL 135

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLML 220
               V V++ T +          T DPYV L +        +TR   +++NPVWNE+   
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 221 SIPENI-PPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            +  N    L++ + D + +  D+ +G A   +  +
Sbjct: 63  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSM 97

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score =  100 bits (250), Expect = 3e-24
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 171 KVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP--P 228
            V+  +  +L       +D Y+ +  G Q  +T V+ +N NP W + +           P
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
           L+V V+D D    DD +G  +           
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHSGFHEVT 488

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 91.3 bits (227), Expect = 4e-23
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 221
            ++ V V    NL   D    SDPYV L L          KT+ IK +LNP WNE+    
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 222 IPENIP--PLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
           + E+     L V ++D D  + +DFMG     I  L
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 89.4 bits (222), Expect = 2e-22
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
           I++ V+   NLA +D     DP+  + +    Q   T  +K+ L+P WN+   L + +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT- 65

Query: 227 PPLKVLVYDKDTFTTDD---FMGDAEIDIQPL 255
             + + V++           F+G   +    +
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97

Query: 228 P---LKVLVYDKDTFTTDDFMGDAEIDI 252
               L + VYD D F+  D +G+ ++ +
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 46  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105

Query: 228 P---LKVLVYDKDTFTTDDFMGDAEIDI 252
               L + VYD D F+  D +G+ ++ +
Sbjct: 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPM 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 80.8 bits (200), Expect = 3e-19
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-I 222
             + V ++K   L  +D   TSDP+V + L       ++T+V + NLNP WNE+ +    
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 223 PENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
           P        L + V D D F+ +D +G+  I +
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 171 KVNVVKGTNLAVRDV--MTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
            VN+ +   L   D   MTSDPY+ + +       VKTRV++  L+P ++E+        
Sbjct: 25  VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF---YG 81

Query: 226 IPP-------LKVLVYDKDTFTTDDFMGDAEIDI 252
           IP        L   +   D F+ DD +G+  I +
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.3 bits (206), Expect = 7e-19
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 223
             + V +++  +L  +D    SDPYV + L     +  +T+V +  LNP++NE+   S+P
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79

Query: 224 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 253
                   L   VYD D F+  D +G   +D  
Sbjct: 80  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL 112

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLS 221
           GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
           +         L + V D D    ++ +G   +  +      R
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 253

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
           + V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80

Query: 226 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
                 L + VYD D F+  D +G+ ++ +  +
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLS 221
           G + V +++  NL   DV   SDPYV + L          KT + K+ LNP +NES    
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMG 246
           +P        + V V D D    +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 19/100 (19%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL--------------GHQTVKTRVIKSNLNPVWNE 216
           +++++  NL  RD    SDP+V + L                   +T+ ++ +LNP WN+
Sbjct: 22  IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81

Query: 217 SL-MLSIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
           ++   SI         L+V V+D D F+++DF+G+  ID+
Sbjct: 82  TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 77.8 bits (192), Expect = 4e-18
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
             +++   L   D    +DPYV L L         ++T+ +++  NPVWNE+L       
Sbjct: 33  CTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY---HG 89

Query: 226 IPP-------LKVLVYDKDTFTTDDFMGDAEIDI 252
           I         L++ V D+D F  ++F+G+    +
Sbjct: 90  ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 83.1 bits (204), Expect = 4e-18
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 165 EFVGLIKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNES 217
           ++     V V++ T +          T DPYV L +        +TR   +++NPVWNE+
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74

Query: 218 LMLSIPENI-PPLKVLVYDKDTFTTDDFMGDAEIDIQP 254
               +  N    L++ + D +    D+ +G A   +  
Sbjct: 75  FEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSS 111

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 78.2 bits (193), Expect = 4e-18
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 172 VNVVKGTNLAVRDVM--TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           V+V +   LA  D     S+PYV   L          KT + +  +NP+++E+L   IPE
Sbjct: 27  VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86

Query: 225 NIPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
           ++     L+  V+    F  + F+G+AEI +
Sbjct: 87  SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 77.0 bits (190), Expect = 7e-18
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 172 VNVVKGTNLAVRDVMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
           V  ++            D YV  ++    G    +T + K  L+  W E L+L + E   
Sbjct: 30  VTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 228 P---LKVLVYDKDTFTTDDFMGDAEIDI 252
           P   L + +   D F+     G+  + +
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGL 115

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLSIPEN 225
           VN++K  NL   D+  TSDPYV + L ++       KT   K NLNP++NES    IP  
Sbjct: 20  VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79

Query: 226 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 253
                 + + V DKD  + +D +G   +  +
Sbjct: 80  KLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 74.8 bits (184), Expect = 6e-17
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 168 GLIKVNVVKGTNLAVRDVM--------TSDPYVILAL---GHQTVKTRVIKSNLNPVWNE 216
             + V V++  +L               S+PYV + L      + +T V +    PV+ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 217 SLMLSIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
                IP        L + V D D F+    +G   + +
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 74.3 bits (183), Expect = 9e-17
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 172 VNVVKGTNLAVRDVMTSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLMLSIPENI 226
           V V    NL       SDPYV + L          KT V K  LNPV+++S   S+    
Sbjct: 28  VVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 227 PP---LKVLVYDKDTFTTDD--FMGDAEIDI 252
                L V V +   F + D   +G   + +
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLSIPEN 225
           V +++  +LA  D    SDP+V L L          KT++ K  LNP +NE     I  +
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100

Query: 226 IPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
                 L + V+D D   ++D++G  ++ I
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLSI 222
            ++ +++++G  L  +   T DPYV ++L  +       KT+ +    +P ++E     +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 223 PENIPP--LKVLVYDKDTFTT-DDFMGDAEIDIQPLVTAAR 260
            E      L V V+++ + +     +G     ++ L+T  +
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDK 127

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 172 VNVVKGTNLAVRDV-MTSDPYVILAL------GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           + +++ +NL+           + +A+           +TR + ++   V+NE   +S+  
Sbjct: 47  ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106

Query: 225 NIPPLKVL---VYDKDTFTTDDFMGDAEIDI 252
                K L   V   D    ++ +G A+I +
Sbjct: 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 172 VNVVKGTNLAVRDVMTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPEN 225
           + V+   +L   D    +PYV   L          KT++ +   NP +NE L+ S   + 
Sbjct: 24  IMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 226 IPP---LKVLVYDKDTFTTDDFMGDAEIDI 252
                 L++ V   ++   + F+G   + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPL 113

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLSIPEN 225
           V +++  NL   DV   SDPYV + L          KT + K+ LNP +NES    +P  
Sbjct: 29  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88

Query: 226 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 253
                 + V V D D    +D +G   +   
Sbjct: 89  QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
             + V V+K  +L   DV   SDPYV + L H        KT V K   N V+NE  +  
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 222 IP-ENIPP--LKVLVYDKDTFTTDDFMGDAEIDI 252
           IP E++    ++ LV D +  + ++ +G   +  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
           V ++   +L  R+     +PYV +            +T+ +K  L P WN++ +      
Sbjct: 22  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY---SP 78

Query: 226 IPP-------LKVLVYDKDTFTTD--DFMGDAEIDIQ 253
           +         L++ ++D+     +  +F+G+  I+++
Sbjct: 79  VHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 172 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
           V ++   +L  R+     +PYV +            +T+ +K  L P WN++ +      
Sbjct: 25  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY---SP 81

Query: 226 IPP-------LKVLVYDKDTFTTD--DFMGDAEIDIQ 253
           +         L++ ++D+     +  +F+G+  I+++
Sbjct: 82  VHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 172 VNVVKGTNLAVRDV--MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
           V V++  +L  +     T  PYV + L          KTR+ +  L+P++ +SL+     
Sbjct: 34  VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93

Query: 225 NIPPLKVLVY-DKDTFTTDDFMGDAEIDI 252
               L+V+V+ D        FMG A+I +
Sbjct: 94  QGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAY 63
           S++ G++IC++CSG HR LGVH+S V SV +D+W + +++   + GGN    +  E+ 
Sbjct: 52  SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELE-KMKAGGNAKFREFLESQ 108

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.5 bits (149), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
            L+ V V K      ++    + YV L + +    T  ++    P W +  M  I     
Sbjct: 5   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDL 61

Query: 228 PLKVLVYDKDTFTTDDFMGDAEIDI 252
            L V V++K     D  +G   I +
Sbjct: 62  GLTVEVWNKGLI-WDTMVGTVWIPL 85

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 165 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE 224
             + L+ V V K      ++    + YV L + +    T  ++ +  P W +  M  I  
Sbjct: 11  GILSLLCVGVKKAKFDGAQEKF--NTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINR 67

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 253
               L V V++K     D  +G   I ++
Sbjct: 68  LDLGLTVEVWNKG-LIWDTMVGTVWIPLR 95

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 146 RKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQTVKTR 204
               + +  K   +       +G + V+V++ T L A +    S+PY  +++G Q+  TR
Sbjct: 365 IDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTR 424

Query: 205 VIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACE 263
            I+  LNP WN +    I +     L + ++D+D F+ DDF+G  EI +  + T   +  
Sbjct: 425 TIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK- 483

Query: 264 TPIS 267
            P++
Sbjct: 484 GPMT 487

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 14/93 (15%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 172 VNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPV-WNESLMLSIPENIPP-- 228
           V++   + L  R    +D    +    Q+  +RV+++  +   ++E+    +  +I    
Sbjct: 25  VHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNE 80

Query: 229 -LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260
            L++ +++     ++  +G   + +Q +V   R
Sbjct: 81  VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENR 113

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 170 IKVNVVKGTNLAVRDVMTSDPYVILAL-GHQTVKTRVIK---SNLNPVWNESLMLSIPEN 225
           +K+ +++   L  +       Y  L L      +T       S     W E    +    
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 226 IPPLKVLVY----DKDTFTTDDFMGDAEIDIQPL 255
           +  L++ +Y     K       ++G   + +  L
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 86/226 (38%)

Query: 25  GVHI-SKVLSV---------------KL------DEWTNE--------QVDALAEMGGNI 54
             HI + +LS+               KL      ++   E         ++   ++    
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 55  AVNKK----Y---EAYTPGNLKKPSPN----SFI---------DERSDFIRRKYEKLEFF 94
           A+++     Y   + +   +L  P  +    S I          ER    R  +  L+ F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LD-F 500

Query: 95  NFDEQALLCPYPAPHRRSSSSSTSSSS-----HDKKHYEKQATRHRIGIAFRNSWGRKES 149
            F EQ +        R  S++  +S S        K Y+     +               
Sbjct: 501 RFLEQKI--------RHDSTAWNASGSILNTLQQLKFYKPYICDN--------------- 537

Query: 150 ESKNSKKANSLVAMVEFVGLIKVNVV--KGTNLAVRDVMTSDPYVI 193
           + K  +  N++   ++F+  I+ N++  K T+L    +M  D  + 
Sbjct: 538 DPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.97
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.97
2owa_A	138	Arfgap-like finger domain containing protein; zinc	99.96
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	99.95
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	99.94
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	99.94
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.85
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.79
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.77
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.76
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.76
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.76
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.75
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.75
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.75
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.75
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.74
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.74
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.73
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.72
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.72
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.72
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.72
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.72
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.71
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.71
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.71
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.71
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.7
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.7
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.7
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.7
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.69
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.63
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.63
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.58
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.55
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.51
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.47
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.46
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.45
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.43
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.29
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.26
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.05
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.04
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.98
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.36
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.22
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	91.07
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.83
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	84.42

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=234.18  Aligned_cols=91  Identities=48%  Similarity=0.869  Sum_probs=84.9

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++||||||+||+|||+||||+||.|++++|+.|+. +||..+|++||+++|..+.+|.++   +.+|
T Consensus        38 P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e  113 (134)
T 2iqj_A           38 PRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQE-MGNGKANRLYEAYLPETFRRPQID---PAVE  113 (134)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHT-CHHHHHHHHHTTTCCSSCCCCCSH---HHHH
T ss_pred             CCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHH-HchHHHHHHHHhcCCccCCCCCch---HHHH
Confidence            899999999999999999999999999999999999999999999965 699999999999999887777653   5789


Q ss_pred             HHHHHHHhcCccccC
Q 023876           82 DFIRRKYEKLEFFNF   96 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~   96 (276)
                      +||++||++++|+..
T Consensus       114 ~fIr~KY~~k~f~~~  128 (134)
T 2iqj_A          114 GFIRDKYEKKKYMDR  128 (134)
T ss_dssp             HHHHHHHTSCTTCCT
T ss_pred             HHHHHHHhCCeeeCC
Confidence            999999999999974

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=234.80  Aligned_cols=93  Identities=45%  Similarity=0.826  Sum_probs=86.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++||||||.||+|||+||||+||.|++++|++|+. +||..+|++||+++|+.+.+|.++   +.+|
T Consensus        40 P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e  115 (141)
T 2crr_A           40 PRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD-MGNTKARLLYEANLPENFRRPQTD---QAVE  115 (141)
T ss_dssp             CCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH-THHHHHHHHGGGSCCTTCCCCCSH---HHHH
T ss_pred             CCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH-HccHHHHHHHHhcCCcccCCCCch---HHHH
Confidence            899999999999999999999999999999999999999999999976 599999999999999887777653   5789


Q ss_pred             HHHHHHHhcCccccCCc
Q 023876           82 DFIRRKYEKLEFFNFDE   98 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~~   98 (276)
                      +||++||++++|+....
T Consensus       116 ~fIr~KY~~k~f~~~~~  132 (141)
T 2crr_A          116 FFIRDKYEKKKYYDKNA  132 (141)
T ss_dssp             HHHHHHHTSCTTCCCGG
T ss_pred             HHHHHHHhcCcccCCCc
Confidence            99999999999997543

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=1.7e-34  Score=222.99  Aligned_cols=95  Identities=23%  Similarity=0.419  Sum_probs=84.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC-CCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~-~~~p~~~~~~~~~   80 (276)
                      |+|||+|||||||++||||||+||+| |+||||+||.|++++|++|+. |||..+|++||+++++. ..+|.+. +.+.+
T Consensus        36 P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~-~GN~~an~~~e~~~~~~~~~~P~~~-d~~~~  112 (140)
T 2olm_A           36 PTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK-HGNEVCKQIWLGLFDDRSSAIPDFR-DPQKV  112 (140)
T ss_dssp             CCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH-CHHHHHHHHHTTTCCTTTSCCCCTT-CHHHH
T ss_pred             CCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH-hccHHHHHHHHhhCCcccCCCCCCC-CHHHH
Confidence            89999999999999999999999996 999999999999999999976 69999999999999764 3445433 45678


Q ss_pred             HHHHHHHHhcCccccCCcc
Q 023876           81 SDFIRRKYEKLEFFNFDEQ   99 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~~~~   99 (276)
                      ++||++||++++|+.+..+
T Consensus       113 ~~fIr~KYe~k~f~~~~~~  131 (140)
T 2olm_A          113 KEFLQEKYEKKRWYVPPEQ  131 (140)
T ss_dssp             HHHHHHHHTSCTTCCCHHH
T ss_pred             HHHHHHHHcCCeeeCCccc
Confidence            8999999999999986554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.97  E-value=2.8e-31  Score=239.89  Aligned_cols=96  Identities=43%  Similarity=0.737  Sum_probs=90.4

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCC-CCCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG-NLKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~-~~~~p~~~~~~~~~   80 (276)
                      |+|||+|+|||||++||||||+||+|||+||||+||.|++++|+.|+.+ ||..+|++||+.+++ ...||.|+++.++|
T Consensus        56 p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~-gn~~~n~~~e~~~~~~~~~kp~~~~~~~~r  134 (368)
T 3jue_A           56 PEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVEAMAVKKPGPSCSRQEK  134 (368)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHS-CHHHHHHHHTTTTTTTTCCCCCTTSCHHHH
T ss_pred             CCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHH-ccHHHHHHHHhhcccccCcCCCCCCCHHHH
Confidence            8999999999999999999999999999999999999999999999775 999999999999986 35799999999999


Q ss_pred             HHHHHHHHhcCccccCCc
Q 023876           81 SDFIRRKYEKLEFFNFDE   98 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~~~   98 (276)
                      ++||++||++++|+..-+
T Consensus       135 e~fIr~KY~~k~f~~~l~  152 (368)
T 3jue_A          135 EAWIHAKYVEKKFLTKLP  152 (368)
T ss_dssp             HHHHHHHHTSCTTCCSCC
T ss_pred             HHHHHHHHHhhcccccch
Confidence            999999999999997643

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.97  E-value=7e-31  Score=238.07  Aligned_cols=95  Identities=41%  Similarity=0.723  Sum_probs=91.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|+|||||++||||||+| +|||+||||+||.|++++|+.|+. +||..||++||+++|+.+.+|.++++...|+
T Consensus        45 p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~-~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e  122 (386)
T 3lju_X           45 PDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLRE  122 (386)
T ss_dssp             CCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH-SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHH
T ss_pred             CCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH-hcchHHHHHHhccCCccCCCCCCccchHHHH
Confidence            89999999999999999999999 999999999999999999999976 5999999999999998888999999999999


Q ss_pred             HHHHHHHhcCccccCCc
Q 023876           82 DFIRRKYEKLEFFNFDE   98 (276)
Q Consensus        82 ~fI~~KY~~~~f~~~~~   98 (276)
                      +||++||++++|+.++.
T Consensus       123 ~fIr~KY~~~~f~~~~~  139 (386)
T 3lju_X          123 QWIRAKYERQEFIYPEK  139 (386)
T ss_dssp             HHHHHHHTSCTTTSGGG
T ss_pred             HEHHhhhCCCEEECCcc
Confidence            99999999999998654

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=9.2e-30  Score=195.38  Aligned_cols=86  Identities=34%  Similarity=0.436  Sum_probs=74.2

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++|||+||+||+|||+|||++||.|++++|+.|+. |||..+|++||++....   | +.+..+..+
T Consensus        47 P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~-~GN~~an~~~e~~~~~~---~-~~~~~~kY~  121 (138)
T 2owa_A           47 PTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI-GGNGRARNYFKQVLGVN---F-SPKTKEYAS  121 (138)
T ss_dssp             CCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHH-CCHHHHHHHHHHHTCTT---C-CGGGCHHHH
T ss_pred             CCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHh-hccHHHHHHHHHHcCCC---C-CCCHHHHHh
Confidence            999999999999999999999999999999999999999999999965 69999999999964321   1 223345667


Q ss_pred             HHHHHHHhcCc
Q 023876           82 DFIRRKYEKLE   92 (276)
Q Consensus        82 ~fI~~KY~~~~   92 (276)
                      .|+.+||+++.
T Consensus       122 s~~a~~Y~~kL  132 (138)
T 2owa_A          122 SICGRQYKQIL  132 (138)
T ss_dssp             SHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            89999999864

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.95  E-value=6.5e-29  Score=192.61  Aligned_cols=64  Identities=39%  Similarity=0.702  Sum_probs=61.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCC-CCHHHHHHHHHcccchhhhhhhhhcCCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYTPG   66 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~~~~~~~~ggN~~~~~~~~~~~~~   66 (276)
                      |+|||+|||||||++|+||||.||+|||+|||++||. |++++|+.|+ .|||..+|++||++...
T Consensus        40 P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~-~~GN~~an~~~e~~~~~  104 (149)
T 2crw_A           40 PSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ-VGGNASASSFFHQHGCS  104 (149)
T ss_dssp             CCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH-TTCHHHHHHHHHHHCCC
T ss_pred             CCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH-HHhhHHHHHHHHhcCCC
Confidence            8999999999999999999999999999999999996 9999999996 57999999999999864

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=99.94  E-value=7.1e-28  Score=184.87  Aligned_cols=87  Identities=32%  Similarity=0.552  Sum_probs=67.5

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS   81 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (276)
                      |+|||+|||||||++||||||+||+|||+||||+||.|++++|+.|+. |||.++|+|||++..     ..|..+..+|+
T Consensus        49 P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~-~GN~~an~~~ea~~~-----~~~~~~~~~KY  122 (147)
T 3dwd_A           49 PQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGNAKFREFLESQED-----YDPCWSLQEKY  122 (147)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHH-CCHHHHHHHHHTSTT-----CCTTCCHHHHH
T ss_pred             CCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHH-HhhHHHHHHHHhCCC-----CCCCCCHHHhh
Confidence            899999999999999999999999999999999999999999999976 699999999999742     12344455443


Q ss_pred             ---------HHHHHHHhcCccc
Q 023876           82 ---------DFIRRKYEKLEFF   94 (276)
Q Consensus        82 ---------~fI~~KY~~~~f~   94 (276)
                               +-|+++++.+.|.
T Consensus       123 ~s~aA~~Yr~~l~~~~eg~~w~  144 (147)
T 3dwd_A          123 NSRAAALFRDKVVALAEGREWS  144 (147)
T ss_dssp             TSHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHcCCcCC
Confidence                     4566666666665

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=99.94  E-value=2.5e-27  Score=184.30  Aligned_cols=65  Identities=46%  Similarity=0.801  Sum_probs=61.9

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN   67 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~   67 (276)
                      |+|||+|||||||++||||||+||+|||+||||+||.|++++|+.|.. |||.++|.+||++....
T Consensus        33 P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~-~GN~~an~~~e~~g~~~   97 (163)
T 3sub_A           33 PDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDK-GGNKKCQTYLENYGISD   97 (163)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHH-CCHHHHHHHHHHTTCTT
T ss_pred             CCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHh-hCHHHHHHHHHHcCCcc
Confidence            899999999999999999999999999999999999999999999965 79999999999987654

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-27  Score=182.68  Aligned_cols=63  Identities=40%  Similarity=0.701  Sum_probs=60.0

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCC-CCHHHHHHHHHcccchhhhhhhhhcCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYTP   65 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~~~~~~~~ggN~~~~~~~~~~~~   65 (276)
                      |+|||+|||||||++||||||+||+|||+|||++||. |++++|+.|+. |||.+||++||++..
T Consensus        48 P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~-~GN~~an~~~e~~g~  111 (144)
T 2p57_A           48 PSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQV-GGNANATAFFRQHGC  111 (144)
T ss_dssp             CCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHH-CCHHHHHHHHHHTTC
T ss_pred             CCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHH-hCHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999999996 99999999965 799999999999854

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.2e-26  Score=202.50  Aligned_cols=94  Identities=36%  Similarity=0.529  Sum_probs=88.9

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC-CCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~-~~~p~~~~~~~~~   80 (276)
                      |+|||+|+|||+|++|||+||.||+|||+|||++||.|+++++..|.+. ||..+|.+||+.++.. ..+|.+.++...|
T Consensus        53 p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~-GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r  131 (301)
T 2b0o_E           53 PTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM-GNTSFNEVMEAQLPSHGGPKPSAESDMGTR  131 (301)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHC-CHHHHHHHHTTTCCSSSCSCCCTTCCHHHH
T ss_pred             CCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCCCCcccHHHH
Confidence            9999999999999999999999999999999999999999999999875 9999999999999875 6799999999999


Q ss_pred             HHHHHHHHhcCccccC
Q 023876           81 SDFIRRKYEKLEFFNF   96 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~   96 (276)
                      ++||++||++++|...
T Consensus       132 ~~~I~~Ky~~~~f~~~  147 (301)
T 2b0o_E          132 RDYIMAKYVEHRFARR  147 (301)
T ss_dssp             HHHHHHHHTSCTTSCC
T ss_pred             HHHHHHHHHhhhhhcc
Confidence            9999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=5.5e-26  Score=197.76  Aligned_cols=94  Identities=34%  Similarity=0.517  Sum_probs=88.4

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC-CCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL-KKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~-~~p~~~~~~~~~   80 (276)
                      |+|||+|||+|||++|||+||+||+|||+|||++||.|+++++..|.. +||..+|++||+.++... .+|.+.++...+
T Consensus        28 p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~-~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~  106 (278)
T 1dcq_A           28 PTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAGFNEIMECCLPSEDPVKPNPGSDMIAR  106 (278)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHHHHHHHTTTCCSSSCCSCCTTCCHHHH
T ss_pred             CCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH-cCcHHHHHHHHhhCChhhcCCCCCCCCHHHH
Confidence            899999999999999999999999999999999999999999999976 599999999999998754 489999999999


Q ss_pred             HHHHHHHHhcCccccC
Q 023876           81 SDFIRRKYEKLEFFNF   96 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~   96 (276)
                      ++||++||+.++|...
T Consensus       107 ~~fI~aKYl~~~f~~~  122 (278)
T 1dcq_A          107 KDYITAKYMERRYARK  122 (278)
T ss_dssp             HHHHHHHHTTCTTSCC
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999999999999864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.92  E-value=5e-26  Score=213.23  Aligned_cols=95  Identities=35%  Similarity=0.485  Sum_probs=88.8

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC-CCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~-~~~p~~~~~~~~~   80 (276)
                      |+|||+|+|||+|++|||+||+||+|||+|||++||.|+++++++|.. +||..+|.+||+.++.. ..+|.+.+....|
T Consensus        34 p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~-~GN~~an~i~E~~lp~~~~~kP~~~s~~~~r  112 (497)
T 3lvq_E           34 PTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGNTSFNEVMEAQLPSHGGPKPSAESDMGTR  112 (497)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-CCHHHHHHHHTTTCCSSSCSCCCTTCCHHHH
T ss_pred             CCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-HhhHHHHHHHHhhcccccCCCCCCcCcHHHH
Confidence            999999999999999999999999999999999999999999999976 59999999999999864 4788899999999


Q ss_pred             HHHHHHHHhcCccccCC
Q 023876           81 SDFIRRKYEKLEFFNFD   97 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~~   97 (276)
                      ++||++||++++|....
T Consensus       113 e~fIraky~~~~f~~~~  129 (497)
T 3lvq_E          113 RDYIMAKYVEHRFARRC  129 (497)
T ss_dssp             HHHHHHHHTTCTTSCCC
T ss_pred             HHHHHHHhhcccccccc
Confidence            99999999999998743

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.6e-22  Score=177.74  Aligned_cols=63  Identities=37%  Similarity=0.722  Sum_probs=60.4

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCC
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP   65 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~   65 (276)
                      |+|||+|+|||||++|||+||+||+|||+|||++||.|++++|+.|.. +||..+|++||+...
T Consensus        48 ~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~-~gN~~~n~~~e~~~~  110 (329)
T 3o47_A           48 PQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGNAKFREFLESQED  110 (329)
T ss_dssp             CCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHH-CCHHHHHHHHHTCSS
T ss_pred             CCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHH-hCcHHHHHHHHhcCC
Confidence            899999999999999999999999999999999999999999999976 699999999998754

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=6.5e-19  Score=136.22  Aligned_cols=99  Identities=31%  Similarity=0.565  Sum_probs=91.7

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCC
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF  239 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~  239 (276)
                      .+|....+.|.|+|++|++|+..+.. .+||||++.++.++.+|+++++++||.|||.|.|.+......|.|+|||++.+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~   85 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD   85 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence            56778899999999999999998876 89999999999999999999999999999999999987667899999999999


Q ss_pred             CCCceeEEEEEeCccccccc
Q 023876          240 TTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~~  259 (276)
                      ++|++||++.++|.++..+.
T Consensus        86 ~~~~~lG~~~i~l~~l~~~~  105 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDGQ  105 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSSC
T ss_pred             CCCCeeEEEEEEHHHccCCC
Confidence            99999999999999997654

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=138.76  Aligned_cols=97  Identities=18%  Similarity=0.367  Sum_probs=85.7

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCc
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPP  228 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~  228 (276)
                      .++....|.|.|+|++|++|+.+|.           +.+||||++.++++. .+|+++++|+||+|||.|.|.+.. ...
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~  100 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH  100 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred             chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence            4567889999999999999998872           258999999998865 699999999999999999999875 458


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876          229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      |.|+|||++.+++|++||.+.|+|.++..+
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~  130 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRT  130 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence            999999999999999999999999999865

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.77  E-value=1e-17  Score=131.85  Aligned_cols=95  Identities=33%  Similarity=0.586  Sum_probs=85.5

Q ss_pred             cccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCC-
Q 023876          162 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF-  239 (276)
Q Consensus       162 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~-  239 (276)
                      +...+.+.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+......|.|+|||++.. 
T Consensus        11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            4566789999999999999998877 89999999999999999999999999999999999977668999999999986 


Q ss_pred             ----------CCCceeEEEEEeCcccc
Q 023876          240 ----------TTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       240 ----------~~d~~lG~~~l~l~~l~  256 (276)
                                +.+++||++.++|.++.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~  117 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLS  117 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred             cccccccccCCCCccEEEEEEEHHHCc
Confidence                      88999999999999984

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=2.8e-18  Score=135.74  Aligned_cols=114  Identities=25%  Similarity=0.350  Sum_probs=96.3

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +.+.....|....+.|.|+|++|++|+..+.. .+||||++.+   +....+|+++++++||+|||.|.|.+..   ...
T Consensus        29 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  108 (152)
T 1rsy_A           29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK  108 (152)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTC
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCC
Confidence            44444566777788999999999999999876 8999999999   4567899999999999999999998854   357


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      .|.|+|||++.++++++||++.++|.++..+.....|..+.
T Consensus       109 ~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A          109 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence            89999999999999999999999999997766555555544

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.76  E-value=4.3e-18  Score=131.95  Aligned_cols=106  Identities=18%  Similarity=0.264  Sum_probs=89.6

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEE-eeC---CCCcEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLK  230 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~~L~  230 (276)
                      ..+....+.|.|+|++|++|+. +.. .+||||++++     +..+.+|+++++++||+|||+|.|. +..   ....|.
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~   91 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQ   91 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEE
T ss_pred             EEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEE
Confidence            4555667899999999999997 444 8999999998     4567899999999999999999999 653   457899


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      |+|||++.++++++||++.++|.++..+.....|..+
T Consensus        92 ~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  128 (134)
T 2b3r_A           92 LSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL  128 (134)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEEC
T ss_pred             EEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEEC
Confidence            9999999999999999999999999876555555444

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.76  E-value=6.5e-19  Score=140.03  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=89.9

Q ss_pred             chhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeC--
Q 023876          154 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE--  224 (276)
Q Consensus       154 ~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~--  224 (276)
                      .+.+.....|....+.|.|+|++|++|+.++.. .+||||++++..      .+++|+++++|+||+|||+|.|.+..  
T Consensus        29 ~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~  108 (155)
T 2z0u_A           29 ATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA  108 (155)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHH
T ss_pred             cEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHH
Confidence            344555567777889999999999999999877 899999999954      26899999999999999999999864  


Q ss_pred             -CCCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 023876          225 -NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       225 -~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                       ....|.|+|||++.++++++||++.++|.++.
T Consensus       109 l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             HHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC
T ss_pred             hCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc
Confidence             24689999999999999999999999999985

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.75  E-value=2.4e-18  Score=134.61  Aligned_cols=113  Identities=26%  Similarity=0.356  Sum_probs=95.9

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +.+.....|....+.|.|+|++|++|+..+.. .+||||++.+   +.++.+|+++++++||+|||+|.|.+..   ...
T Consensus        21 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  100 (143)
T 3f04_A           21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK  100 (143)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTC
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCC
Confidence            34444566777788999999999999998876 8999999999   5568899999999999999999999864   347


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      .|.|+|||++.++++++||++.++|.++..+.....|..+
T Consensus       101 ~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  140 (143)
T 3f04_A          101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEEC
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEEC
Confidence            8999999999999999999999999999876655555444

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=9.6e-18  Score=130.64  Aligned_cols=100  Identities=24%  Similarity=0.404  Sum_probs=88.6

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCCCCC
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTT  241 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~  241 (276)
                      ..+.|.|+|++|++|+..+.+.+||||+++++.++++|+++++++||+|||.|.|.+..    ....|.|+|||++.+++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~   84 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ   84 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence            45789999999999999887789999999999999999999999999999999999864    35789999999999999


Q ss_pred             CceeEEEEEeCccccccccccCCC
Q 023876          242 DDFMGDAEIDIQPLVTAARACETP  265 (276)
Q Consensus       242 d~~lG~~~l~l~~l~~~~~~~~~~  265 (276)
                      |++||++.++|.++..+.....|.
T Consensus        85 ~~~lG~~~i~l~~l~~~~~~~~w~  108 (140)
T 2dmh_A           85 NKLIGTATVALKDLTGDQSRSLPY  108 (140)
T ss_dssp             CCCCEEEEEEGGGTCSSSCEEEEE
T ss_pred             CceEEEEEEEHHHhccCCCceeEE
Confidence            999999999999997765544443

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=132.49  Aligned_cols=113  Identities=25%  Similarity=0.321  Sum_probs=94.1

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC----CC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NI  226 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~  226 (276)
                      +.+.....|....+.|.|+|++|++|+..+.. .+||||++.+.   .+..+|+++++++||+|||.|.|.+..    ..
T Consensus        13 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   92 (141)
T 2d8k_A           13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQ   92 (141)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTT
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHccc
Confidence            33444556777788999999999999999876 89999999993   467899999999999999999998532    35


Q ss_pred             CcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       227 ~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ..|.|+|||++.++++++||++.++|.++..+.....|..+
T Consensus        93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  133 (141)
T 2d8k_A           93 RILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL  133 (141)
T ss_dssp             SEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECC
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEEC
Confidence            78999999999999999999999999999876644444443

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=6.1e-18  Score=131.55  Aligned_cols=115  Identities=24%  Similarity=0.340  Sum_probs=93.5

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEE-eeC---C
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---N  225 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~  225 (276)
                      +.+.....|....+.|.|+|++|++|+.++.  ..+||||++.+.   .+..+|+++++++||+|||.|.|. +..   .
T Consensus         9 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~   88 (138)
T 1ugk_A            9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ   88 (138)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGG
T ss_pred             EEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhc
Confidence            3344445666778899999999999999886  379999999994   468899999999999999999996 653   2


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccC-CCccCC
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACE-TPISMS  269 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~-~~~~~~  269 (276)
                      ...|.|+|||++.++++++||++.++|.++..+..... +..+..
T Consensus        89 ~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           89 ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            46899999999999999999999999999987654433 344433

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=4.2e-18  Score=133.11  Aligned_cols=106  Identities=25%  Similarity=0.464  Sum_probs=90.3

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEE-eeCC---C
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS-IPEN---I  226 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~-~~~~---~  226 (276)
                      +.....|....+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||+|||.|.|. +...   .
T Consensus        18 l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   97 (142)
T 2chd_A           18 LEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQR   97 (142)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHH
T ss_pred             EEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccC
Confidence            334456666788999999999999999876 899999999954     67899999999999999999998 5431   3


Q ss_pred             CcEEEEEEEcCCCCCCceeEEEEEeCcccccccccc
Q 023876          227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       227 ~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                      ..|.|+|||++.++++++||++.++|.++..+....
T Consensus        98 ~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~  133 (142)
T 2chd_A           98 KTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN  133 (142)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEE
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccE
Confidence            689999999999999999999999999998766444

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.74  E-value=5.7e-18  Score=134.17  Aligned_cols=115  Identities=16%  Similarity=0.309  Sum_probs=94.2

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEee--CCCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIP--ENIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~--~~~~  227 (276)
                      +.+.....|....+.|.|+|++|++|+..+.+.+||||++.+     ...+.+|+++++++||+|||+|.|.+.  ....
T Consensus        14 G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~   93 (153)
T 3fbk_A           14 GAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK   93 (153)
T ss_dssp             CCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTS
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCC
Confidence            444555678888999999999999999998558999999998     345789999999999999999999984  3445


Q ss_pred             cEEEEEEEcCCCCC-CceeEEEEEeCccccc-cccccCCCccCC
Q 023876          228 PLKVLVYDKDTFTT-DDFMGDAEIDIQPLVT-AARACETPISMS  269 (276)
Q Consensus       228 ~L~i~v~d~~~~~~-d~~lG~~~l~l~~l~~-~~~~~~~~~~~~  269 (276)
                      .|.|+|||++.+++ |++||++.++|.++.. ......|..+..
T Consensus        94 ~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A           94 RLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence            69999999999887 9999999999999975 444444544443

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.74  E-value=8.5e-18  Score=130.30  Aligned_cols=95  Identities=32%  Similarity=0.530  Sum_probs=87.3

Q ss_pred             ccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeecccccc-CCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC
Q 023876          163 MVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  240 (276)
Q Consensus       163 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~-~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~  240 (276)
                      .....+.|.|+|++|++|+..+.. .+||||++.++.++.+|++++ +++||+|||.|.|.+......|.|+|||++.++
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            345778999999999999998876 899999999999899999998 899999999999999877789999999999999


Q ss_pred             CCceeEEEEEeCccccc
Q 023876          241 TDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~  257 (276)
                      +|++||++.++|.++..
T Consensus        85 ~d~~lG~~~i~l~~l~~  101 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFV  101 (136)
T ss_dssp             TTCCSEEEEEESHHHHH
T ss_pred             CCceEEEEEEEHHHhcc
Confidence            99999999999999853

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.74  E-value=7.4e-18  Score=130.85  Aligned_cols=95  Identities=20%  Similarity=0.452  Sum_probs=84.0

Q ss_pred             cceeeEEEEEEEeeecCCCCCCC-C-----------CCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEE
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDVM-T-----------SDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLK  230 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~~-~-----------~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~  230 (276)
                      ....|.|.|+|++|++|+..+.. .           +||||++.++... .+|+++++++||+|||.|.|.+... ..|.
T Consensus         2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~   80 (136)
T 1gmi_A            2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred             cccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEE
Confidence            35678999999999999987743 3           8999999998765 6899999999999999999998765 7899


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~  259 (276)
                      |+|||++.+++|++||.+.++|.++....
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~  109 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNG  109 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccC
Confidence            99999999999999999999999988643

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2.2e-17  Score=128.95  Aligned_cols=113  Identities=23%  Similarity=0.188  Sum_probs=91.2

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPP  228 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~  228 (276)
                      +.....|....+.|.|+|++|++|+.++...+||||++++.     ..+.+|+++++++||+|||+|.|.+..   ....
T Consensus        13 l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~   92 (142)
T 2dmg_A           13 IQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRT   92 (142)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCE
T ss_pred             EEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCE
Confidence            33345566667899999999999998875459999999992     257899999999999999999999854   2358


Q ss_pred             EEEEEEEcCCCCC--CceeEEEEEeCccccccccccCCCccCC
Q 023876          229 LKVLVYDKDTFTT--DDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       229 L~i~v~d~~~~~~--d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      |.|+|||++.++.  +++||++.++|.++........|..+..
T Consensus        93 L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           93 LDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             EEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             EEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            9999999998764  5799999999999876665555655544

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.73  E-value=3.7e-18  Score=134.44  Aligned_cols=113  Identities=24%  Similarity=0.338  Sum_probs=93.9

Q ss_pred             hhhhhhcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeCC---
Q 023876          156 KANSLVAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPEN---  225 (276)
Q Consensus       156 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~~---  225 (276)
                      .+.....|....+.|.|+|++|++|+..+ .. .+||||++.+.     ..+.+|+++++++||+|||+|.|.+...   
T Consensus        11 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~   90 (148)
T 3fdw_A           11 RIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLA   90 (148)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGG
T ss_pred             EEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhC
Confidence            34444566677889999999999999887 34 89999999995     3478999999999999999999998653   


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      ...|.|+|||++.++++++||++.++|.++..+.....|..+.
T Consensus        91 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  133 (148)
T 3fdw_A           91 QRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH  133 (148)
T ss_dssp             GCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECB
T ss_pred             ceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECc
Confidence            3469999999999999999999999999998766555555543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=2.3e-17  Score=128.39  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=89.5

Q ss_pred             hhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C-eeeccccccCCCCCeEeeEEEEEeeCC---CC
Q 023876          156 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H-QTVKTRVIKSNLNPVWNESLMLSIPEN---IP  227 (276)
Q Consensus       156 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~-~~~~T~~~~~t~nP~w~e~~~f~~~~~---~~  227 (276)
                      .+.....|....+.|.|+|++|++   ++.. .+||||++.+.   . ...+|+++++++||+|||+|.|.+...   ..
T Consensus        14 ~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~   90 (138)
T 1wfm_A           14 KLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA   90 (138)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred             EEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCC
Confidence            344445666778899999999993   4555 89999999993   2 357999999999999999999998652   46


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      .|.|+|||++.+++|++||++.++|.++..+.....|..+..
T Consensus        91 ~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             EEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            799999999999999999999999999975555555555443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=1.3e-17  Score=128.02  Aligned_cols=99  Identities=18%  Similarity=0.396  Sum_probs=81.6

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC----CCCcE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPL  229 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L  229 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++.+     +..+.+|+++++++||+|||.|.|.+..    ....|
T Consensus        10 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l   89 (129)
T 2bwq_A           10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERML   89 (129)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEE
T ss_pred             EEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeE
Confidence            345666678999999999999998876 8999999998     4568899999999999999999999532    34689


Q ss_pred             EEEEEEcCCCCC--CceeEEEEEeCcccccc
Q 023876          230 KVLVYDKDTFTT--DDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       230 ~i~v~d~~~~~~--d~~lG~~~l~l~~l~~~  258 (276)
                      .|+|||++.+++  +++||++.++|.++...
T Consensus        90 ~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~  120 (129)
T 2bwq_A           90 EITLWDQARVREEESEFLGEILIELETALLD  120 (129)
T ss_dssp             EEEEEEC-------CEEEEEEEEEGGGCCCS
T ss_pred             EEEEEECCcCcCcCCceeEEEEEEccccCCC
Confidence            999999999987  99999999999998754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.72  E-value=1.1e-17  Score=134.98  Aligned_cols=103  Identities=25%  Similarity=0.352  Sum_probs=88.0

Q ss_pred             eeeEEEEEEEeeecCCCCCC-C-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEE-EcC
Q 023876          166 FVGLIKVNVVKGTNLAVRDV-M-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY-DKD  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~-d~~  237 (276)
                      ..+.|.|+|++|++|+.++. . .+||||++.+..     .+.+|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            57899999999999999984 3 899999999843     378999999999999999999998766678999999 999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      .+++|++||++.++|.++..+.....|..+.
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~  138 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLF  138 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECB
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECC
Confidence            9999999999999999997655555554443

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=2.3e-17  Score=126.11  Aligned_cols=100  Identities=24%  Similarity=0.422  Sum_probs=85.2

Q ss_pred             eeEEEEEEEeeecCCCC---CCC-CCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC
Q 023876          167 VGLIKVNVVKGTNLAVR---DVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT  238 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~---~~~-~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~  238 (276)
                      .+.|.|+|++|++|+.+   +.. .+||||++.++.   ..++|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            47899999999999984   433 899999999974   78899999999999999999999954 56789999999998


Q ss_pred             CCCCceeEEEEEeCccccccccccCCCcc
Q 023876          239 FTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      ++ +++||++.++|.++..+.....+..+
T Consensus        82 ~~-~~~iG~~~i~l~~l~~~~~~~~~~~L  109 (126)
T 1rlw_A           82 VM-DETLGTATFTVSSMKVGEKKEVPFIF  109 (126)
T ss_dssp             SC-CEEEEEEEEEGGGSCTTCEEEEEEEE
T ss_pred             CC-CceeEEEEEEHHHccCCCcEEEEEEc
Confidence            84 89999999999999876655555444

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=1.1e-17  Score=130.31  Aligned_cols=113  Identities=16%  Similarity=0.301  Sum_probs=91.8

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEe-eC---
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI-PE---  224 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~-~~---  224 (276)
                      +.+.....|....+.|.|+|++|++|+.++.. .+||||++.+     +....+|+++++++||+|||.|.|.+ ..   
T Consensus         8 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~   87 (141)
T 1v27_A            8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   87 (141)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGG
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHh
Confidence            33444455666678999999999999999877 8999999998     45688999999999999999999995 32   


Q ss_pred             CCCcEEEEEEEcCCCCC--CceeEEEEEeCccccccccccCCCccC
Q 023876          225 NIPPLKVLVYDKDTFTT--DDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       225 ~~~~L~i~v~d~~~~~~--d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      ....|.|+|||++.+++  +++||++.++|.++.... ...|..+.
T Consensus        88 ~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~  132 (141)
T 1v27_A           88 RERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  132 (141)
T ss_dssp             GTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECB
T ss_pred             cCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECc
Confidence            34689999999999987  999999999999987543 33344433

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.72  E-value=5.2e-17  Score=131.60  Aligned_cols=97  Identities=33%  Similarity=0.645  Sum_probs=79.4

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcC
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD  237 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~  237 (276)
                      ...|.|.|+|++|++|+.++.. .+||||++.++.      .+++|+++++++||.|||.|.|.+......|.|+|||++
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN   84 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence            3468999999999999998876 899999999964      578999999999999999999999876678999999999


Q ss_pred             CCCCCceeEEEEEeCccccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      .+++|++||++.++|.++......
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~  108 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPR  108 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC---
T ss_pred             CCCCCcEEEEEEEEHHHccccCCc
Confidence            999999999999999999876543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=1.1e-17  Score=130.52  Aligned_cols=102  Identities=27%  Similarity=0.457  Sum_probs=86.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--------------eeeccccccCCCCCeEeeEEEEE-eeC---CCC
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--------------QTVKTRVIKSNLNPVWNESLMLS-IPE---NIP  227 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~--------------~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~  227 (276)
                      .+.|.|+|++|++|+..+.. .+||||++.++.              .+.+|+++++++||+|||.|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            68999999999999999876 899999999965              25799999999999999999997 542   457


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      .|.|+|||++.++++++||++.++|.++........|..+.
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  137 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK  137 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence            89999999999999999999999999987655544454443

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.71  E-value=5.5e-17  Score=128.31  Aligned_cols=96  Identities=35%  Similarity=0.670  Sum_probs=81.6

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcC
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD  237 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~  237 (276)
                      ...+.|.|+|++|++|+..+.. .+||||++.++.      ...+|+++++++||+|||.|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            4567899999999999998876 899999999953      578999999999999999999999876678999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      .+++|++||++.++|.++..+..
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCT
T ss_pred             CCcCCCeeEEEEEEHHHcccCCC
Confidence            99999999999999999987654

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.71  E-value=5.6e-17  Score=131.11  Aligned_cols=93  Identities=19%  Similarity=0.403  Sum_probs=82.6

Q ss_pred             eeeEEEEEEEeeecCC-CCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCce
Q 023876          166 FVGLIKVNVVKGTNLA-VRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~-~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~  244 (276)
                      ..+.|.|+|++|++|+ ..+.+.+||||++.++.++.+|+++++++||+|||.|.|.+.. ...|.|+|||++.++.|++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            4578999999999999 5555579999999999899999999999999999999999864 7789999999999999999


Q ss_pred             eEEEEEeCccccccc
Q 023876          245 MGDAEIDIQPLVTAA  259 (276)
Q Consensus       245 lG~~~l~l~~l~~~~  259 (276)
                      ||++.++|.++..+.
T Consensus       113 lG~~~i~l~~l~~~~  127 (173)
T 2nq3_A          113 LGTAALDIYETLKSN  127 (173)
T ss_dssp             EEEEEEEHHHHHHHT
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999987543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.71  E-value=4.6e-17  Score=130.61  Aligned_cols=102  Identities=27%  Similarity=0.379  Sum_probs=88.6

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC---C
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---N  225 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---~  225 (276)
                      +.+.....|....+.|.|+|++|++|+..+.. .+||||++++..     ...+|+++++++||+|||.|.|.+..   .
T Consensus        24 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  103 (166)
T 2cm5_A           24 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA  103 (166)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred             ceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcC
Confidence            33444566777789999999999999998877 899999999954     67899999999999999999999864   2


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                      ...|.|+|||++.++++++||++.++|.++.
T Consensus       104 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          104 KKSLDISVWDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             GCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred             CCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence            4689999999999999999999999999864

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.5e-17  Score=130.71  Aligned_cols=112  Identities=19%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCC-C------C-CCCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEee
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVR-D------V-MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIP  223 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-~------~-~~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~  223 (276)
                      +.+.....|....+.|.|+|++|++|+.. +      . ..+||||++.+.   .++.+|+++++++||+|||+|.|.+.
T Consensus        13 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   92 (147)
T 2enp_A           13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIP   92 (147)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCC
T ss_pred             eEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeC
Confidence            33444456777788999999999999984 2      1 278999999995   45789999999999999999999986


Q ss_pred             C---CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCc
Q 023876          224 E---NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI  266 (276)
Q Consensus       224 ~---~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~  266 (276)
                      .   ....|.|+|||++.++++++||++.++|.++........|..
T Consensus        93 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  138 (147)
T 2enp_A           93 FLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA  138 (147)
T ss_dssp             HHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred             hHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEE
Confidence            4   235899999999999999999999999999976655444433

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.70  E-value=6.1e-17  Score=128.96  Aligned_cols=101  Identities=29%  Similarity=0.380  Sum_probs=86.8

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCC---
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---  225 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~---  225 (276)
                      +.+.....|....+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||+|||.|.|.+...   
T Consensus        12 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~   91 (159)
T 1tjx_A           12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ   91 (159)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhC
Confidence            33444556777788999999999999999877 899999999842     468999999999999999999998642   


Q ss_pred             CCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      ...|.|+|||++.++++++||++.+++..+
T Consensus        92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A           92 KVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             GCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence            457999999999999999999999999865

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.70  E-value=1.2e-16  Score=123.31  Aligned_cols=89  Identities=21%  Similarity=0.427  Sum_probs=79.7

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCC--
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--  241 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~--~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~--  241 (276)
                      ...|.|+|++|++|+..+.. .+||||++.++.  +..+|+++++++||+|||.|.|.+... ..|.|+|||++.+++  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQ   82 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSST
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCC
Confidence            35799999999999999877 899999999964  788999999999999999999999764 359999999999876  


Q ss_pred             -CceeEEEEEeCcccc
Q 023876          242 -DDFMGDAEIDIQPLV  256 (276)
Q Consensus       242 -d~~lG~~~l~l~~l~  256 (276)
                       |++||++.+++.++.
T Consensus        83 ~d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAIS   98 (132)
T ss_dssp             TTTEEEEEEECHHHHH
T ss_pred             CCCceEEEEEeHHHhh
Confidence             899999999998873

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=5.3e-17  Score=127.92  Aligned_cols=92  Identities=37%  Similarity=0.506  Sum_probs=83.0

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCC
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT  238 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~  238 (276)
                      .+.|.|+|++|++|+..+.. .+||||++.+.     ..+.+|+++++++||+|||+|.|.+..  ....|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            57899999999999998876 89999999995     467899999999999999999999865  24679999999999


Q ss_pred             CCCCceeEEEEEeCcccccc
Q 023876          239 FTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~  258 (276)
                      ++++++||++.++|.++..+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA  129 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC
T ss_pred             CCCCCEEEEEEEEHHHhCcC
Confidence            99999999999999998765

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.70  E-value=2.4e-17  Score=127.84  Aligned_cols=98  Identities=33%  Similarity=0.439  Sum_probs=85.3

Q ss_pred             hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCCC---CcE
Q 023876          159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENI---PPL  229 (276)
Q Consensus       159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~~---~~L  229 (276)
                      ....|....+.|.|+|++|++|+..+.. .+||||++++..     .+.+|+++++++||+|||.|.|.+....   ..|
T Consensus         7 ~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l   86 (138)
T 3n5a_A            7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTI   86 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEE
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEE
Confidence            3345666778999999999999998877 899999999853     4789999999999999999999986532   579


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCcccc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                      .|+|||++.+++|++||++.++|.++.
T Consensus        87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           87 IITVMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred             EEEEEECCCCCCCcEEEEEEEccccCC
Confidence            999999999999999999999998754

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.69  E-value=8.7e-17  Score=127.18  Aligned_cols=98  Identities=27%  Similarity=0.360  Sum_probs=80.7

Q ss_pred             hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCe---eeccccccCCCCCeEeeEEEEEeeCC---CC
Q 023876          157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQ---TVKTRVIKSNLNPVWNESLMLSIPEN---IP  227 (276)
Q Consensus       157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~---~~~T~~~~~t~nP~w~e~~~f~~~~~---~~  227 (276)
                      +.....|....+.|.|+|++|++|+..+.. .+||||++.+  +..   +++|+++++++||+|||+|.|.+...   ..
T Consensus        19 l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~   98 (153)
T 1w15_A           19 LLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEI   98 (153)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTE
T ss_pred             EEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCce
Confidence            333456666778999999999999998876 8999999998  333   67999999999999999999998653   35


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQP  254 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~  254 (276)
                      .|.|+|||++.++++++||++.++|.+
T Consensus        99 ~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           99 SVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             EEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            799999999999999999999999987

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.63  E-value=1.1e-15  Score=117.80  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=74.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeecccccc-CCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCce
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~-~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~  244 (276)
                      .++.|.|+|++|++++.  .+.+||||++.  .+..+|++++ +++||+|||.|.|.+......|.|+|||++ +++|++
T Consensus         3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CCEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             cceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            35799999999998853  33789999999  3334555554 689999999999999876678999999999 889999


Q ss_pred             eEEEEEeCccccccc
Q 023876          245 MGDAEIDIQPLVTAA  259 (276)
Q Consensus       245 lG~~~l~l~~l~~~~  259 (276)
                      ||++.++|.++....
T Consensus        78 iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           78 VGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhhhcC
Confidence            999999999986543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=1.3e-15  Score=132.23  Aligned_cols=113  Identities=26%  Similarity=0.344  Sum_probs=94.2

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +.+.....|....+.|.|+|++|++|+.++.. .+||||++.++   .+..+|+++++++||+|||.|.|.+..   ...
T Consensus         6 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~   85 (284)
T 2r83_A            6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK   85 (284)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTC
T ss_pred             eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcC
Confidence            33444456667788999999999999998877 89999999994   357789999999999999999999864   346


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      .|.|+|||++.++.+++||++.++|.++..+.....|..+
T Consensus        86 ~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L  125 (284)
T 2r83_A           86 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  125 (284)
T ss_dssp             EEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred             EEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEe
Confidence            8999999999999999999999999999776554444444

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.59  E-value=3.3e-15  Score=119.88  Aligned_cols=89  Identities=24%  Similarity=0.339  Sum_probs=74.7

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeecccccc-CCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCce
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~-~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~  244 (276)
                      .++.|.|+|++|++++.  ...+||||++.  .+..+|++++ ++.||+|||.|.|.+......|.|+|||++ ++.|++
T Consensus        12 ~~~~L~V~V~~A~~l~~--~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCCEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             ceEEEEEEEEEEECCCC--CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            36799999999998852  33789999999  3345666665 689999999999999876678999999999 889999


Q ss_pred             eEEEEEeCccccccc
Q 023876          245 MGDAEIDIQPLVTAA  259 (276)
Q Consensus       245 lG~~~l~l~~l~~~~  259 (276)
                      ||++.++|.++....
T Consensus        87 iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           87 VGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999986543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=6.3e-15  Score=128.95  Aligned_cols=102  Identities=27%  Similarity=0.477  Sum_probs=87.2

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +.+.....|....+.|.|+|++|++|+.++.. .+||||++++   +.+..+|+++++++||+|||.|.|.+..   ...
T Consensus         7 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~   86 (296)
T 1dqv_A            7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR   86 (296)
T ss_dssp             CEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSC
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCC
Confidence            44445566777789999999999999999877 8999999999   5678899999999999999999999854   245


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEe-Ccccc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEID-IQPLV  256 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~-l~~l~  256 (276)
                      .|.|+|||++.+++|++||++.++ +.++.
T Consensus        87 ~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~  116 (296)
T 1dqv_A           87 KLHFSVYDFDRFSRHDLIGQVVLDNLLELA  116 (296)
T ss_dssp             CCEEEEEECCSSSCCCEEEEEECCCTTGGG
T ss_pred             EEEEEEEEcCCCCCCceEEEEEeccccccc
Confidence            899999999999999999999996 44444

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.58  E-value=8.7e-15  Score=137.28  Aligned_cols=86  Identities=26%  Similarity=0.389  Sum_probs=79.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCCCCCc
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~~~d~  243 (276)
                      ++.|.|+|++|++|+. |.. .+||||++.+++++.+|+++++++||+|||.|.|.+..  ....|+|+|||+|.++.||
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            7899999999999998 776 89999999999999999999999999999999998642  5678999999999999999


Q ss_pred             eeEEEEEeCc
Q 023876          244 FMGDAEIDIQ  253 (276)
Q Consensus       244 ~lG~~~l~l~  253 (276)
                      +||++.++|.
T Consensus       472 ~LG~~~~~L~  481 (540)
T 3nsj_A          472 LLGSCDRSPH  481 (540)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEEee
Confidence            9999999987

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.55  E-value=1.6e-14  Score=135.35  Aligned_cols=95  Identities=32%  Similarity=0.558  Sum_probs=86.2

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCc
Q 023876          166 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~  243 (276)
                      ..+.|.|+|++|++|+..+.. .+||||++.++..+.+|+++++++||+|||.|.|.+.. ....|.|+|||+|.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            457899999999999998876 89999999999999999999999999999999999966 4467999999999999999


Q ss_pred             eeEEEEEeCcccccccc
Q 023876          244 FMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       244 ~lG~~~l~l~~l~~~~~  260 (276)
                      +||++.++|.++..+..
T Consensus       465 ~lG~~~~~l~~l~~~~~  481 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQE  481 (510)
T ss_dssp             EEEEEEEEHHHHHHHHH
T ss_pred             ceEEEEEEHHHhccccC
Confidence            99999999999886543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.51  E-value=5.5e-14  Score=121.97  Aligned_cols=96  Identities=30%  Similarity=0.407  Sum_probs=82.8

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeCC---CCcEEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKV  231 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~~---~~~L~i  231 (276)
                      ..+....+.|.|.|++|++|+.++.. .+||||++.+.  +   .+.+|+++++++||+|||.|.|.+...   ...|.|
T Consensus       143 l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i  222 (284)
T 2r83_A          143 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV  222 (284)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEE
T ss_pred             EEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEE
Confidence            44555678999999999999998877 89999999983  2   467999999999999999999998653   346999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCcccc
Q 023876          232 LVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       232 ~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                      +|||++.++++++||++.+++..+.
T Consensus       223 ~V~d~d~~~~~~~iG~~~i~l~~~~  247 (284)
T 2r83_A          223 TVLDYDKIGKNDAIGKVFVGYNSTG  247 (284)
T ss_dssp             EEEECCSSSCCCEEEEEEEETTCCH
T ss_pred             EEEeCCCCCCCcEEEEEEECCCCCC
Confidence            9999999999999999999998753

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.47  E-value=1.6e-13  Score=105.52  Aligned_cols=90  Identities=13%  Similarity=0.236  Sum_probs=80.8

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCeeecccccc-CCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCCce
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDF  244 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~-~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~~  244 (276)
                      -|.|.|.+|.+|+.    ..|||+++.+.+.+++|++++ ++.||+|||.|.|.+..   ..+.|.|.|+|+++++++.+
T Consensus        22 sL~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl   97 (144)
T 3l9b_A           22 ALIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL   97 (144)
T ss_dssp             EEEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred             EEEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence            58899999999984    679999999999999999998 69999999999999854   45789999999999999999


Q ss_pred             eEEEEEeCcccccccccc
Q 023876          245 MGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       245 lG~~~l~l~~l~~~~~~~  262 (276)
                      ||++.++|+++.......
T Consensus        98 IG~~~i~Lq~lv~~~~l~  115 (144)
T 3l9b_A           98 IGTFRMVLQKVVEENRVE  115 (144)
T ss_dssp             EEEEEEESHHHHHHSEEE
T ss_pred             EEEEEEEhHHhccCCeEE
Confidence            999999999988765443

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.46  E-value=7.4e-14  Score=135.02  Aligned_cols=100  Identities=24%  Similarity=0.451  Sum_probs=87.2

Q ss_pred             eeeEEEEEEEeeecCCC---CCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcC
Q 023876          166 FVGLIKVNVVKGTNLAV---RDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKD  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~---~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~  237 (276)
                      ..+.|.|+|++|++|+.   ++.. .+||||++.++   ..+.+|+++++++||+|||+|.|.+.. ....|+|+|||++
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            46899999999999998   6655 89999999997   467899999999999999999999976 5678999999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCCCc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARACETPI  266 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~  266 (276)
                      .++ |++||++.++|.++..+.....|..
T Consensus        96 ~~~-ddfIG~v~I~L~~L~~g~~~~~w~~  123 (749)
T 1cjy_A           96 YVM-DETLGTATFTVSSMKVGEKKEVPFI  123 (749)
T ss_dssp             SSS-CEEEEEECCBSTTSCTTCCCCEEEE
T ss_pred             CCC-CceeEEEEEEHHHcCCCCceEEEEe
Confidence            998 9999999999999977665544433

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.45  E-value=3.1e-14  Score=124.53  Aligned_cols=98  Identities=28%  Similarity=0.439  Sum_probs=84.5

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeCC---CCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~~---~~~L~  230 (276)
                      ...|....+.|.|.|++|++|+.++.. .+||||++++.  +   .+.+|+++++++||+|||.|.|.+...   ...|.
T Consensus       144 sl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  223 (296)
T 1dqv_A          144 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS  223 (296)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCC
T ss_pred             EEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEE
Confidence            345555678999999999999998876 78999999995  2   467999999999999999999998652   35799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      |+|||++.++++++||.+.+++..+..
T Consensus       224 i~V~d~d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          224 IAVVDYDCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred             EEEEeCCCCCCCceEEEEEECCccCCc
Confidence            999999999999999999999987643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.43  E-value=6.9e-13  Score=126.84  Aligned_cols=95  Identities=24%  Similarity=0.437  Sum_probs=83.5

Q ss_pred             eeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eeeccccccCC-CCCeEeeEEEEEeeCC-CCcEEEEEEE
Q 023876          166 FVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSN-LNPVWNESLMLSIPEN-IPPLKVLVYD  235 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~~T~~~~~t-~nP~w~e~~~f~~~~~-~~~L~i~v~d  235 (276)
                      ..+.|.|+|++|++|+..+.   +.+||||+|.+.+     .+.+|++++++ +||+|||+|.|.+... ...|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            45789999999999998873   3899999999932     67899999997 9999999999998753 3679999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccccc
Q 023876          236 KDTFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       236 ~~~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      ++.++++++||++.++|..|..+..
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~r  599 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGYR  599 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCcE
Confidence            9999999999999999999987654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.29  E-value=5e-12  Score=122.41  Aligned_cols=94  Identities=37%  Similarity=0.506  Sum_probs=83.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcC
Q 023876          166 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKD  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~  237 (276)
                      ..+.|.|+|++|++|+.++.. .+||||++.+     ...+.+|+++++++||.|||.|.|.+..  ....|.|+|||++
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            357899999999999999887 8999999998     4467899999999999999999999864  3456999999999


Q ss_pred             CCCCCceeEEEEEeCccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAA  259 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~  259 (276)
                      .+++|++||.+.++|.++....
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~  271 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG  271 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC
T ss_pred             cccccccccccccchhhhccCC
Confidence            9999999999999999887543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.26  E-value=4.2e-13  Score=124.99  Aligned_cols=99  Identities=13%  Similarity=0.202  Sum_probs=12.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCC---CCCeEeeEEEEEeeCCCCcEEEEEEEc-C---
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSN---LNPVWNESLMLSIPENIPPLKVLVYDK-D---  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t---~nP~w~e~~~f~~~~~~~~L~i~v~d~-~---  237 (276)
                      ..+.|.|+|++|++|+.++    ||||++.++++ ..+|++++++   +||+|||.|.|.+......|.|+|||. +   
T Consensus         9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EEECC-------------------------------------------------CCEECC--------------------
T ss_pred             eccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            4568999999999999877    99999999765 5699999999   999999999998655457899999994 4   


Q ss_pred             CCCCCceeEEEEEeCccccccccccCCCccC
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARACETPISM  268 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~  268 (276)
                      ..++|++||.+.+++.++..+.....|..+.
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ----------------------CCEECC---
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            3688999999999999998766666665553

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.05  E-value=6.4e-10  Score=108.66  Aligned_cols=88  Identities=16%  Similarity=0.451  Sum_probs=73.9

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-------eeeccccccC-CCCCeEeeE-EEEE-eeC-CCCcEEEEEEE
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-------QTVKTRVIKS-NLNPVWNES-LMLS-IPE-NIPPLKVLVYD  235 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-------~~~~T~~~~~-t~nP~w~e~-~~f~-~~~-~~~~L~i~v~d  235 (276)
                      .+.|.|+|++|++|+..   ..||||+|.+.+       .+++|+++++ ++||+|||. |.|. +.. ....|+|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            36899999999999854   579999999843       5679999886 599999998 9998 644 33579999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccccc
Q 023876          236 KDTFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       236 ~~~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      ++    +++||++.++|..|..+...
T Consensus       726 ~d----ddfiG~~~ipL~~L~~GyR~  747 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPGYRH  747 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCEEEE
T ss_pred             cC----CCeeeEEEEEHHHcCCcceE
Confidence            74    78999999999999887654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.04  E-value=5.1e-10  Score=110.01  Aligned_cols=88  Identities=19%  Similarity=0.443  Sum_probs=73.1

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECC------eeeccccccC-CCCCeEee-EEEEE-eeC-CCCcEEEEEEEcC
Q 023876          168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGH------QTVKTRVIKS-NLNPVWNE-SLMLS-IPE-NIPPLKVLVYDKD  237 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~------~~~~T~~~~~-t~nP~w~e-~~~f~-~~~-~~~~L~i~v~d~~  237 (276)
                      ..|.|+|++|++|+..   ..||||+|.+.+      .+++|+++++ ++||+||| .|.|. +.. ....|.|+|||++
T Consensus       725 ~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d  801 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG  801 (885)
T ss_dssp             EEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred             eEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC
Confidence            4799999999999863   589999999843      3579999986 59999999 69998 643 3457999999987


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                          +++||++.++|..|..+..+.
T Consensus       802 ----ddfiG~~~lpL~~L~~GyR~v  822 (885)
T 3ohm_B          802 ----GKFVGHRILPVSAIRSGYHYV  822 (885)
T ss_dssp             ----TEEEEEEEEETTTCCCEEEEE
T ss_pred             ----ccEEeeEEEEHHHcCCCceEE
Confidence                899999999999998876643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.98  E-value=1.3e-09  Score=106.68  Aligned_cols=89  Identities=26%  Similarity=0.514  Sum_probs=73.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-CC-----eeeccc-cccC-CCCCeEee-EEEE-EeeC-CCCcEEEEEE
Q 023876          166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-GH-----QTVKTR-VIKS-NLNPVWNE-SLML-SIPE-NIPPLKVLVY  234 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~~-----~~~~T~-~~~~-t~nP~w~e-~~~f-~~~~-~~~~L~i~v~  234 (276)
                      ..+.|.|+|++|++|+..   ..||||+|.+ |.     ++++|+ ++++ ++||+||| .|.| .+.. ....|.|.||
T Consensus       676 ~~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            357899999999999853   5899999998 31     357899 7765 59999999 6999 7754 3357999999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccc
Q 023876          235 DKDTFTTDDFMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       235 d~~~~~~d~~lG~~~l~l~~l~~~~~~  261 (276)
                      |++    +++||++.++|..|..+...
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G~r~  775 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSGYHH  775 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEEEE
T ss_pred             EeC----CCccceEeeehhhcCCCcEE
Confidence            986    79999999999999877654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.36  E-value=2.3e-06  Score=63.84  Aligned_cols=87  Identities=10%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCee----ecc-ccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT----VKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  240 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~----~~T-~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~  240 (276)
                      ...|+|.+.++.--+.+... ..||||.+.+....    .+| ...++|..|+||+.|.-.+.+ ...|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            45678877665432222223 68999999985532    244 667779999999999988876 5789999997554  


Q ss_pred             CCceeEEEEEeCcccccc
Q 023876          241 TDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       241 ~d~~lG~~~l~l~~l~~~  258 (276)
                        +|++.+.+.+++|...
T Consensus        82 --~fvAn~tV~~edL~~~   97 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAER   97 (126)
T ss_dssp             --EEEEEEEEEHHHHHHH
T ss_pred             --CeeeEEEEEHHHHHhh
Confidence              8999999999999854

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.22  E-value=2.5e-06  Score=64.49  Aligned_cols=89  Identities=11%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             ceeeEEEEEEEeeecCCCCC--CCCCCcEEEEEECCe----eecc-ccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcC
Q 023876          165 EFVGLIKVNVVKGTNLAVRD--VMTSDPYVILALGHQ----TVKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD  237 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~l~~~----~~~T-~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~  237 (276)
                      ...+.|+|.+.+..-.+.+.  ....||||.|.+...    ..+| ...++|..|+||+.|.-.+.+ ...|.|.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence            44567888887765444332  237899999998653    2456 556678999999999988876 578999999644


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~  258 (276)
                      .    +|++.+.|.+++|...
T Consensus        86 ~----~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           86 V----DLISETTVELYSLAER  102 (138)
T ss_dssp             C----SCCEEEEEESHHHHHH
T ss_pred             C----CeeeEEEEEHHHHHhh
Confidence            3    8999999999999854

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=91.07  E-value=3.9  Score=33.29  Aligned_cols=54  Identities=15%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             eeccccccCCCCCeEeeEEEEEeeCC---CCcEEEEEEEcCCC----CCCceeEEEEEeCc
Q 023876          200 TVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDTF----TTDDFMGDAEIDIQ  253 (276)
Q Consensus       200 ~~~T~~~~~t~nP~w~e~~~f~~~~~---~~~L~i~v~d~~~~----~~d~~lG~~~l~l~  253 (276)
                      .++|.+.-++.+|.|+|++.+.++..   ..-|.|++++...-    ..+..+|.+.++|-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            46777888889999999999999762   34588888864321    12347899999974

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=86.83  E-value=4.8  Score=40.06  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             cceeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEE
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLV  233 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v  233 (276)
                      .+....+.|+|..+.++...+  ..+-||.+.+  |.+.    ..|..+.-..+|.|||.+.|.+.-    ....|.|+|
T Consensus       213 ~~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti  290 (940)
T 2wxf_A          213 WSLEQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL  290 (940)
T ss_dssp             TTCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             hhcCCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence            345568999999999886542  4567777665  5542    344444446789999999998742    356799999


Q ss_pred             EEcCCC--C----------CCceeEEEEEeCccc
Q 023876          234 YDKDTF--T----------TDDFMGDAEIDIQPL  255 (276)
Q Consensus       234 ~d~~~~--~----------~d~~lG~~~l~l~~l  255 (276)
                      |+....  +          .+..+|.+.++|-+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBCT
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEECC
Confidence            985321  1          234899999998753

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=84.42  E-value=6.7  Score=39.55  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             cceeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCe----eeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEE
Q 023876          164 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQ----TVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLV  233 (276)
Q Consensus       164 ~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~----~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v  233 (276)
                      ......+.|+|..+.++........+-||.+.+  |.+    ...|..+. ..+|.|||.+.|.+.-    ....|.|+|
T Consensus       351 w~~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          351 WVINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             GGCCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             hhCCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEE
Confidence            345568899999988775433224677888777  543    23344333 4578899999998742    456799999


Q ss_pred             EEcCCC----CCCceeEEEEEeCccc
Q 023876          234 YDKDTF----TTDDFMGDAEIDIQPL  255 (276)
Q Consensus       234 ~d~~~~----~~d~~lG~~~l~l~~l  255 (276)
                      |+....    ..+..||.+.++|-+.
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCT
T ss_pred             EEecCccCcccccceeEEeeeeeEcc
Confidence            985432    1245799999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	2e-25
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-18
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-15
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-14
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-14
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-13
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-12
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	5e-12
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-11
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	5e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	3e-06
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	5e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	7e-05

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.8 bits (238), Expect = 2e-25
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 6   SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
           S + G+  CI+CSGIHR LGVH S++ S+ LD     ++     + GN   N+  E   P
Sbjct: 30  STNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNI-GNAGFNEIMECCLP 88

Query: 66  -GNLKKPSPNSFIDERSDFIRRKYEKLEF 93
             +  KP+P S +  R D+I  KY +  +
Sbjct: 89  SEDPVKPNPGSDMIARKDYITAKYMERRY 117

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.5 bits (185), Expect = 9e-18
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE 224
            G ++V +V    L   D +   DPYV L    Q  K+ V +     P WNE+ + ++ E
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257
               LK  ++DKD  T DD +G+A I ++P+  
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 221
            ++ V V    NL   D    SDPYV L L          KT+ IK +LNP WNE+    
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 222 IPENIP--PLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
           + E+     L V ++D D  + +DFMG     I  L
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 110

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 4e-15
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
           V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN+     I
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            +    L+V V+D+D     DF+G   I +  +
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 94

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 168 GLIKVNVVKGTNLAVRDV-MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 221
             + V ++   +L  R+     +PYV +            +T+ +K  L P WN++ + S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 222 IPENI----PPLKVLVYDKDTFTTD--DFMGDAEIDIQPL 255
                      L++ ++D+     +  +F+G+  I+++  
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 1e-14
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
            L+ V V K      ++    + YV L + +    T  ++    P W +  M  I     
Sbjct: 2   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDL 58

Query: 228 PLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            L V V++K     D  +G   I ++ +
Sbjct: 59  GLTVEVWNKG-LIWDTMVGTVWIPLRTI 85

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 168 GLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
             + V V+K  +L   DV   SDPYV + L H        KT V K   N V+NE  +  
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 253
           IP        ++ LV D +  + ++ +G   +   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 168 GLIKVNVVKGTNLAVRDV-MTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 223
             + V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 224 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            +      L + VYD D F+  D +G+ ++ +  +
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.1 bits (155), Expect = 1e-13
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 168 GLIKVNVVKGTNLAVRDV-MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 221
           G + V +++  +LA  D    SDP+V L L          KT++ K  LNP +NE     
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 222 IPENIPPLKVLV---YDKDTFTTDDFMGDAEIDIQPL 255
           I  +    K L    +D D   ++D++G  ++ I   
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 61.1 bits (147), Expect = 2e-12
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 163 MVEFVGLIKVNVVKGTNLAVRDVM------------TSDPYVILALGHQTV-KTRVIKSN 209
           MV F GL+K+ + +  +L                    DPY+ L +    + +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 210 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 256
            +P W++  +  +       ++ V+       DDF+ +  I  + L+
Sbjct: 61  NSPAWHDEFVTDVCNGRKI-ELAVFHDAPIGYDDFVANCTIQFEELL 106

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 3e-12
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM--TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSI 222
               VN+ +   L   D    TSDPY+ + +       VKTRV++  L+P ++E+     
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 223 PE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
                     L   +   D F+ DD +G+  I +  +
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 5e-12
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 226
             +++ V+       +       PYV + +  Q+ KT    +  +P W + L + +   +
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PV 64

Query: 227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257
             L   V+   T  +D  +G A +DI   + 
Sbjct: 65  SKLHFRVWSHQTLKSDVLLGTAALDIYETLK 95

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 5e-11
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 221
           G + V +++  NL   DV   SDPYV + L       +  KT + K+ LNP +NES    
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 222 IPEN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 252
           +P        + V V D D    +D +G   +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 5e-11
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 170 IKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLM-LS 221
             V V++ T +          T DPYV L +        +TR   +++NPVWNE+   + 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 222 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            P     L++ + D +    D+ +G A   +  +
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSM 97

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--------------GHQTVKTRVIKSNLNP 212
           G + +++++  NL  RD    SDP+V + L                   +T+ ++ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 213 VWNESLMLSIPENIPP----LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
            WN++++             L+V V+D D F+++DF+G+  ID+   
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 170 IKVNVVKGTNLAVRDVM---TSDPYVI-----LALGHQTVKTRVIK-SNLNPVWNESLML 220
           ++V ++ G  L   +       DP VI     +     + +T VI  +  NP W+     
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 221 SIP-ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 253
            +   ++  ++ +V D D+ + +DF+G + I   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN 99

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 4e-10
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 221
           GL+ V ++K +NL   D+   SDPYV  +L       +  KT + K+ LNP +NE+L+  
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 222 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 253
           +         L + V D D    ++ +G   +  +
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVI----LALGHQTVKTRVIKSNLNPVWNESLMLSIP 223
             + V +++  +L  +D        +    L    +  +T+V +  LNP++NE+   S+P
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 224 ENIPP---LKVLVYDKDTFTTDDFMGDAEID 251
                   L   VYD D F+  D +G   +D
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 108

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 170 IKVNVVKGTNLAVRDVMTSDPYVILALG--------HQTVKTRVIKSNLNPVWNESLMLS 221
           + + V+ G  L+ R V     YV + L             K     +++NPVW E   + 
Sbjct: 3   LSITVISGQFLSERSV---RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 222 IPENIPPLKVL---VYDKDTFTTDDFMGDAEIDI 252
               +P L  L   V ++     + F+G   I I
Sbjct: 60  EKILMPELASLRVAVMEEG----NKFLGHRIIPI 89

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIP 223
             + V  ++            D YV  ++    G    +T + K  L+  W E L+L + 
Sbjct: 26  AELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 224 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 255
           E   P   L + +   D F+     G+  + +   
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 187 TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT 241
            S P+  + +       +       K  + P W  +    I      +++++        
Sbjct: 23  ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAA---- 77

Query: 242 DDFMGDAEIDIQPL 255
           +D M +  + +  L
Sbjct: 78  EDPMSEVTVGVSVL 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.83
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.76
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.73
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.73
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.71
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.68
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.67
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.66
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.63
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.59
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.3
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.26
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.38

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-36  Score=229.97  Aligned_cols=94  Identities=34%  Similarity=0.527  Sum_probs=88.9

Q ss_pred             CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCC-CCCCCCCCCCHHHH
Q 023876            2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG-NLKKPSPNSFIDER   80 (276)
Q Consensus         2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~-~~~~p~~~~~~~~~   80 (276)
                      |+|||+|||||||++|||+||+||+|||+|||++||.|++++|+.|+. +||..+|++||++++. ...+|.++++...|
T Consensus        26 p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~-~GN~~~n~~~ea~~~~~~~~kp~~~~~~~~r  104 (122)
T d1dcqa2          26 PTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAGFNEIMECCLPSEDPVKPNPGSDMIAR  104 (122)
T ss_dssp             CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHHHHHHHTTTCCSSSCCSCCTTCCHHHH
T ss_pred             CCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHH-HhHHHHHHHHHhhCCcccCcCCCCCccHHHH
Confidence            899999999999999999999999999999999999999999999977 6999999999999986 35689999999999


Q ss_pred             HHHHHHHHhcCccccC
Q 023876           81 SDFIRRKYEKLEFFNF   96 (276)
Q Consensus        81 ~~fI~~KY~~~~f~~~   96 (276)
                      ++||++||++++|++.
T Consensus       105 ~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2         105 KDYITAKYMERRYARK  120 (122)
T ss_dssp             HHHHHHHHTTCTTSCC
T ss_pred             HHHHHHHHHhCccccc
Confidence            9999999999999963

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.9e-21  Score=143.77  Aligned_cols=97  Identities=31%  Similarity=0.573  Sum_probs=89.4

Q ss_pred             ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCc
Q 023876          165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~  243 (276)
                      ..+|.|.|+|++|++|+.++.. .+||||++.+++++.+|++++++.||.|||.|.|.+......|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            4579999999999999999877 899999999999999999999999999999999999876788999999999999999


Q ss_pred             eeEEEEEeCccccccccc
Q 023876          244 FMGDAEIDIQPLVTAARA  261 (276)
Q Consensus       244 ~lG~~~l~l~~l~~~~~~  261 (276)
                      +||++.++|.++..+...
T Consensus        83 ~lG~~~i~l~~l~~~~~~  100 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPN  100 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCE
T ss_pred             eEEEEEEEHHHCCCCCce
Confidence            999999999999766543

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=1.3e-18  Score=133.35  Aligned_cols=97  Identities=31%  Similarity=0.520  Sum_probs=87.0

Q ss_pred             cccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeecccccc-CCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCC
Q 023876          162 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTF  239 (276)
Q Consensus       162 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~-~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~  239 (276)
                      +.....|.|.|+|++|++|+..+.. .+||||++.++.+..+|++++ .+.||.|||.|.|.+......|.|+|||++.+
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            3445678999999999999998876 899999999999999999887 58999999999999987667899999999999


Q ss_pred             CCCceeEEEEEeCcccccc
Q 023876          240 TTDDFMGDAEIDIQPLVTA  258 (276)
Q Consensus       240 ~~d~~lG~~~l~l~~l~~~  258 (276)
                      ++|++||++.|+|.++...
T Consensus        84 ~~d~~iG~~~i~L~~l~~~  102 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVE  102 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHH
T ss_pred             CCCCEEEEEEEEhHHhccc
Confidence            9999999999999988654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.2e-18  Score=133.25  Aligned_cols=113  Identities=26%  Similarity=0.356  Sum_probs=94.3

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +++.....|....+.|.|+|++|++|+.++.. .+||||++++   +.++.+|++++++.||.|||.|.|.+..   ...
T Consensus        21 G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~  100 (143)
T d1rsya_          21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK  100 (143)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTC
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCc
Confidence            33444456666778999999999999998877 8999999998   5567899999999999999999998754   456


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      .|.|+|||++.++++++||++.|+|.++..+.....|..+
T Consensus       101 ~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  140 (143)
T d1rsya_         101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred             eEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence            8999999999999999999999999998766655555444

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.2e-18  Score=129.47  Aligned_cols=101  Identities=27%  Similarity=0.435  Sum_probs=86.5

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +++.....|....+.|.|+|++|++|+.++.. .+||||++++   +.++.+|++++++.||+|||.|.|.+..   ...
T Consensus         5 G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~   84 (130)
T d1dqva1           5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR   84 (130)
T ss_dssp             CEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSC
T ss_pred             EEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCC
Confidence            34444567778889999999999999998877 8999999998   4457899999999999999999999854   346


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                      .|.|+|||++.+++|++||++.|++...
T Consensus        85 ~L~v~V~d~~~~~~d~~iG~~~i~~~~~  112 (130)
T d1dqva1          85 KLHFSVYDFDRFSRHDLIGQVVLDNLLE  112 (130)
T ss_dssp             CCEEEEEECCSSSCCCEEEEEECCCTTG
T ss_pred             eEEEEEEEcCCCCCCceEEEEEECchhh
Confidence            7999999999999999999999986543

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=4.4e-18  Score=129.69  Aligned_cols=101  Identities=34%  Similarity=0.414  Sum_probs=85.7

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcC
Q 023876          166 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKD  237 (276)
Q Consensus       166 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~  237 (276)
                      ..+.|.|+|++|++|+.++.. .+||||++++     +..+.+|++++++.||+|||.|.|.+..  ....|.|+|||++
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            347899999999999999887 8999999998     4567899999999999999999999865  2357999999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCCCcc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      .+++|++||.+.++|.++..+. ...|..+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~-~~~W~~L  121 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAG-VDGWFKL  121 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCC-EEEEEEC
T ss_pred             CCCCCcEeEEEEEeHHHcCCCC-CCeEEEC
Confidence            9999999999999999986543 3334444

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=127.59  Aligned_cols=90  Identities=20%  Similarity=0.401  Sum_probs=81.4

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      +.|.|+|++|++++..+.. .+||||++.++++.++|++++++.||.|||.|.|.+.. ...|+|+|||++.+++|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEE
Confidence            6799999999999987766 89999999999999999999999999999999999875 468999999999999999999


Q ss_pred             EEEEeCcccccc
Q 023876          247 DAEIDIQPLVTA  258 (276)
Q Consensus       247 ~~~l~l~~l~~~  258 (276)
                      ++.++|.++...
T Consensus        85 ~~~i~L~~l~~~   96 (133)
T d2nq3a1          85 TAALDIYETLKS   96 (133)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEEEHHHhhhh
Confidence            999999988653

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.8e-18  Score=128.74  Aligned_cols=117  Identities=23%  Similarity=0.318  Sum_probs=93.3

Q ss_pred             chhhhhhhcccceeeEEEEEEEeeecCCCCCCC--CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEE-eeC---
Q 023876          154 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---  224 (276)
Q Consensus       154 ~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~-~~~---  224 (276)
                      .+.+.....|....+.|.|+|++|++|+.++..  .+||||++.+   +.++.+|++++++.||.|||.|.|. +..   
T Consensus         8 ~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l   87 (138)
T d1ugka_           8 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI   87 (138)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTG
T ss_pred             CEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHc
Confidence            345555667778888999999999999988765  4799999999   5567899999999999999999997 433   


Q ss_pred             CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccc-ccCCCccCCC
Q 023876          225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR-ACETPISMSP  270 (276)
Q Consensus       225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~-~~~~~~~~~~  270 (276)
                      ....|.|+|||.+.++++++||++.++|.++..... ...+.+....
T Consensus        88 ~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~  134 (138)
T d1ugka_          88 QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             GGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             ccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence            235799999999999999999999999999864433 3334444333

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.71  E-value=3.4e-17  Score=125.34  Aligned_cols=97  Identities=21%  Similarity=0.455  Sum_probs=84.4

Q ss_pred             ccceeeEEEEEEEeeecCCCCC------------CCCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcE
Q 023876          163 MVEFVGLIKVNVVKGTNLAVRD------------VMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPL  229 (276)
Q Consensus       163 ~~~~~g~L~V~v~~a~~L~~~~------------~~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L  229 (276)
                      |+-+.|.|.|+|++|++|++.+            ...+||||++.++++. .+|++++++.||.|||.|.|.+.+ ...|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCce
Confidence            4568899999999999998753            2268999999999866 589999999999999999999975 4689


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 023876          230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      .|+|||++.+++|++||.+.++|+++.....
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~  110 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGS  110 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTC
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCC
Confidence            9999999999999999999999999976543

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=6.3e-18  Score=130.30  Aligned_cols=104  Identities=26%  Similarity=0.427  Sum_probs=87.0

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--------------eeeccccccCCCCCeEeeEEEEEeeC----CCC
Q 023876          167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--------------QTVKTRVIKSNLNPVWNESLMLSIPE----NIP  227 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~--------------~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~  227 (276)
                      .|.|.|+|++|++|+.++.. .+||||++++..              ++.+|++++++.||.|||.|.|.+..    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            57899999999999999877 899999999821              23689999999999999999997432    456


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCCC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP  270 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~  270 (276)
                      .|.|+|||++.+++|++||++.|+|.++........|..+...
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            7999999999999999999999999999877666555555443

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=6.4e-17  Score=122.30  Aligned_cols=89  Identities=21%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876          167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  246 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG  246 (276)
                      ++.|.|+|.+|++|.+.+  ..||||++.+++++.+|.+++. .||.|||.|.|.+......|.|+|||++.. .|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            468999999999999877  5899999999999999998864 599999999999988778899999999876 589999


Q ss_pred             EEEEeCccccccc
Q 023876          247 DAEIDIQPLVTAA  259 (276)
Q Consensus       247 ~~~l~l~~l~~~~  259 (276)
                      ++.|+|+++....
T Consensus        77 ~~~I~L~~l~~~~   89 (128)
T d2cjta1          77 TVWIPLRTIRQSN   89 (128)
T ss_dssp             EEEEEGGGSCBCS
T ss_pred             EEEEEehhhccCC
Confidence            9999999987543

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.6e-16  Score=119.56  Aligned_cols=93  Identities=25%  Similarity=0.482  Sum_probs=78.0

Q ss_pred             eEEEEEEEeeecCCCCC--CC-CCCcEEEEEE-----CCeeeccccccCC-CCCeEeeEEEEEeeC-CCCcEEEEEEEcC
Q 023876          168 GLIKVNVVKGTNLAVRD--VM-TSDPYVILAL-----GHQTVKTRVIKSN-LNPVWNESLMLSIPE-NIPPLKVLVYDKD  237 (276)
Q Consensus       168 g~L~V~v~~a~~L~~~~--~~-~~dpyv~v~l-----~~~~~~T~~~~~t-~nP~w~e~~~f~~~~-~~~~L~i~v~d~~  237 (276)
                      ..|.|+|++|++|+..+  .. .+||||++.+     +.++.+|++++++ +||.|||+|.|.+.. ....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            46999999999998654  33 7899999998     3567899987655 799999999998865 4467999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      .++.|++||++.++|.++..+..
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~~  106 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGYR  106 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCCE
Confidence            99999999999999999976644

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=120.58  Aligned_cols=100  Identities=23%  Similarity=0.381  Sum_probs=83.3

Q ss_pred             eeEEEEEEEeeecCCCCCC----CCCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC
Q 023876          167 VGLIKVNVVKGTNLAVRDV----MTSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT  238 (276)
Q Consensus       167 ~g~L~V~v~~a~~L~~~~~----~~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~  238 (276)
                      .+.|.|+|++|++|+....    +.+||||++.++.   ++.+|++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            4679999999999987532    2789999999964   57899999999999999999999976 44679999999987


Q ss_pred             CCCCceeEEEEEeCccccccccccCCCcc
Q 023876          239 FTTDDFMGDAEIDIQPLVTAARACETPIS  267 (276)
Q Consensus       239 ~~~d~~lG~~~l~l~~l~~~~~~~~~~~~  267 (276)
                      . +|++||++.++|++|..+.....+..+
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L  109 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIF  109 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEc
Confidence            5 589999999999999876665544433

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=122.77  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=91.7

Q ss_pred             hhhhhhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEEC----CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876          155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP  227 (276)
Q Consensus       155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~  227 (276)
                      +++.....|....+.|.|+|++|++|+..  +.+||||++.+.    ....+|++++++.||+|||.|.|.+..   ...
T Consensus        13 ~~l~~sl~y~~~~~~L~V~v~~a~~L~~~--g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~   90 (138)
T d1wfma_          13 PKLHYCLDYDCQKAELFVTRLEAVTSNHD--GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA   90 (138)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEECCCCS--SCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred             CEEEEEEEECCCCCEEEEEEEEcCCCCCC--CCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccce
Confidence            33444566777788999999999999643  268999999992    235789999999999999999999865   346


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876          228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS  269 (276)
Q Consensus       228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~  269 (276)
                      .|.|+|||++.++++++||++.|+|.++........|..+..
T Consensus        91 ~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             EEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             EEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            799999999999999999999999999876666655665543

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.2e-16  Score=120.66  Aligned_cols=98  Identities=28%  Similarity=0.409  Sum_probs=84.3

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ...|....+.|.|+|++|++|+..+.. .+||||++++     ...+.+|++++++.||.|||.|.|.+..   ....|.
T Consensus         7 ~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~   86 (137)
T d2cm5a1           7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD   86 (137)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEE
Confidence            356667778999999999999988776 8999999998     2346789999999999999999999864   345799


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                      |.|||++.++++++||++.+++..+..
T Consensus        87 v~v~~~~~~~~~~~iG~~~i~l~~~~~  113 (137)
T d2cm5a1          87 ISVWDYDIGKSNDYIGGCQLGISAKGE  113 (137)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred             EEeeeCCCCCCCCEEEEEEeCccccCc
Confidence            999999999999999999999987643

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.9e-16  Score=123.01  Aligned_cols=103  Identities=28%  Similarity=0.359  Sum_probs=87.9

Q ss_pred             cchhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC--
Q 023876          153 NSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE--  224 (276)
Q Consensus       153 ~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~--  224 (276)
                      .++.+.....|....+.|.|+|++|++|+..+.. .+||||++++.  .   ...+|++++++.||+|||.|.|.+..  
T Consensus        10 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~   89 (157)
T d1uowa_          10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ   89 (157)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             eeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHH
Confidence            3455666677888889999999999999988876 89999999982  2   24589999999999999999999865  


Q ss_pred             -CCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876          225 -NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL  255 (276)
Q Consensus       225 -~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l  255 (276)
                       ....|.|+|||++.++++++||++.|++...
T Consensus        90 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             GGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             cCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence             2457999999999999999999999999765

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.4e-16  Score=122.09  Aligned_cols=97  Identities=27%  Similarity=0.356  Sum_probs=78.6

Q ss_pred             hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876          160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK  230 (276)
Q Consensus       160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~  230 (276)
                      ...|....+.|.|+|++|++|+.++.. .+||||++++  +.   .+.+|++++++.||.|||.|.|.+..   ....|.
T Consensus         7 sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~   86 (138)
T d1w15a_           7 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVE   86 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEE
Confidence            355666778999999999999998877 8999999998  32   35689999999999999999999855   234699


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCcccc
Q 023876          231 VLVYDKDTFTTDDFMGDAEIDIQPLV  256 (276)
Q Consensus       231 i~v~d~~~~~~d~~lG~~~l~l~~l~  256 (276)
                      |+|||++.++++++||++.+++....
T Consensus        87 i~v~d~~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          87 FLVLDSERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             EEEEECCTTSCCEEEEEEEESTTCCS
T ss_pred             EEEEeCCCCCCCCEEEEEEEcchhCC
Confidence            99999999999999999999998654

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-16  Score=118.00  Aligned_cols=100  Identities=18%  Similarity=0.421  Sum_probs=79.1

Q ss_pred             hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEE-eeC---CCCcEE
Q 023876          161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLK  230 (276)
Q Consensus       161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~~L~  230 (276)
                      ..|....+.|.|+|++|++|+..+.. .+||||++.+     ...+.+|++++++.||.|||.|.|. +..   ....|.
T Consensus         7 l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~   86 (125)
T d2bwqa1           7 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLE   86 (125)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEE
T ss_pred             EEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEE
Confidence            44666678999999999999988777 8999999998     2346799999999999999999997 432   345799


Q ss_pred             EEEEEcCCC--CCCceeEEEEEeCcccccccc
Q 023876          231 VLVYDKDTF--TTDDFMGDAEIDIQPLVTAAR  260 (276)
Q Consensus       231 i~v~d~~~~--~~d~~lG~~~l~l~~l~~~~~  260 (276)
                      |+|||.+.+  +.+++||++.++|+++.....
T Consensus        87 i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~  118 (125)
T d2bwqa1          87 ITLWDQARVREEESEFLGEILIELETALLDDE  118 (125)
T ss_dssp             EEEEEC-------CEEEEEEEEEGGGCCCSSC
T ss_pred             EEEEECCCCCCCCCeeEEEEEEEchhcCCCCC
Confidence            999999876  345699999999998875443

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2e-16  Score=122.30  Aligned_cols=105  Identities=27%  Similarity=0.414  Sum_probs=89.1

Q ss_pred             cchhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC--
Q 023876          153 NSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE--  224 (276)
Q Consensus       153 ~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~--  224 (276)
                      +++.+.....|....|.|.|+|++|++|+..+.. .+||||++++..     .+.+|++++++.||.|||.|.|.+..  
T Consensus         5 ~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   84 (145)
T d1dqva2           5 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES   84 (145)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             cceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhh
Confidence            4455556678888889999999999999988776 889999999843     24689999999999999999998864  


Q ss_pred             -CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876          225 -NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT  257 (276)
Q Consensus       225 -~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~  257 (276)
                       ....|.|.|||++.++++++||++.|++..+..
T Consensus        85 ~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~  118 (145)
T d1dqva2          85 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP  118 (145)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEECchHcCc
Confidence             345799999999999999999999999987643

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.4e-12  Score=92.64  Aligned_cols=87  Identities=26%  Similarity=0.540  Sum_probs=66.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE-C-----Ceeecccc--ccCCCCCeEeeE-EEE-EeeC-CCCcEEEEEEEcC
Q 023876          169 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G-----HQTVKTRV--IKSNLNPVWNES-LML-SIPE-NIPPLKVLVYDKD  237 (276)
Q Consensus       169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~-----~~~~~T~~--~~~t~nP~w~e~-~~f-~~~~-~~~~L~i~v~d~~  237 (276)
                      .|.|+|++|++|+...   .||||++.+ |     ..+.+|++  .++++||.|||. |.| .+.. ....|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~~---~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSSC---CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCCC---CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            5899999999998654   699999998 2     23333433  466899999976 444 3333 3357999999975


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 023876          238 TFTTDDFMGDAEIDIQPLVTAARAC  262 (276)
Q Consensus       238 ~~~~d~~lG~~~l~l~~l~~~~~~~  262 (276)
                          +++||++.++|+.+..|....
T Consensus        79 ----~~~lG~~~ipl~~l~~GyR~v   99 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGYHHL   99 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEEEEE
T ss_pred             ----CCEEEEEEEEcccCcCCceEE
Confidence                789999999999998887664

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=8.6e-12  Score=93.00  Aligned_cols=84  Identities=12%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCc
Q 023876          170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDD  243 (276)
Q Consensus       170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~  243 (276)
                      |.|+|....--+....+ .+||||+|++..     ...+|.++++|+||+|||+|.|.+.+ ...|.|.|||+|    ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~   79 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TE
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----cc
Confidence            44444433222223334 899999999943     24578889999999999999999976 468999999986    78


Q ss_pred             eeEEEEEeCcccccc
Q 023876          244 FMGDAEIDIQPLVTA  258 (276)
Q Consensus       244 ~lG~~~l~l~~l~~~  258 (276)
                      ++|.+.+++..+...
T Consensus        80 ~~g~~~i~l~~l~~~   94 (123)
T d1bdya_          80 PMSEVTVGVSVLAER   94 (123)
T ss_dssp             EEEEEEEEHHHHHHH
T ss_pred             ccCccEEehhheeec
Confidence            999999999988653