Citrus Sinensis ID: 023897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MAVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQSPNESKL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEccccHHHHHHHccccEEcccHHHHHccccEEEEcccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccEEccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHccccccccHHHHHccccEEEEEEcHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHcccccEEEEcccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mavsspsssstlkigiigfgpfGQFLAKTMIKQGhilratsrtdhsqlchrsgisffsdkrafleadndvILISTSILSLSEVlnslpvhclQRRTLIADVLSVKEYPRNVLLqvlpeemdvlcthpmfgpesgqngwKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKessvndsfdlfsglyihnrFAKQELLDLEAAFEKVKHKLQQKMEEVqleqspneskl
Flexible Loop (DISEMBL)
mavsspsssstlkigIIGFGPFGQFLAKTMIKQGHILRatsrtdhsqlCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIadvlsvkeyPRNVLLQVLPEEMDVLCTHPmfgpesgqngWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMeevqleqspneskl
Low Complexity Region (SEG)
MAVSSPSSSSTLKigiigfgpfgqfLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVilistsilslsEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQSPNESKL
Disordered region (IsUnstruct)
***********LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEK***********************
Disordered Region (DISOPRED)
**************GIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQSP*****
Disordered Region (DISEMBL)
***********LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQK***************
Disordered Region (DISPRO)
*********STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQSPN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSPNESKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q944B6	640	Arogenate dehydrogenase 1	yes	no	0.989	0.425	0.519	1e-80
Q9LMR3	358	Arogenate dehydrogenase 2	no	no	0.945	0.726	0.515	7e-75
Q58029	446	Probable arogenate/prephe	yes	no	0.683	0.421	0.237	3e-08
P07023	373	T-protein OS=Escherichia	N/A	no	0.614	0.453	0.257	2e-07
O60078	431	Probable prephenate dehyd	yes	no	0.818	0.522	0.243	3e-07
Q02287	373	T-protein OS=Enterobacter	N/A	no	0.534	0.394	0.258	8e-05
P20049	452	Prephenate dehydrogenase	yes	no	0.829	0.504	0.204	0.0002
P20692	371	Prephenate dehydrogenase	yes	no	0.610	0.452	0.239	0.0005

>sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1

 Score =  299 bits (766), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/281 (51%), Positives = 198/281 (70%), Gaps = 9/281 (3%)

Query: 4   SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAF 63
            S +  S LKIGI+GFG FGQFL KTM+KQGH + A SR+D++    + G+S+FSD    
Sbjct: 357 GSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDL 416

Query: 64  LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
            E   +VI++ TSILS  +VL SLP   L+R TL  DVLSVKE+PRN+ LQ LP++ D+L
Sbjct: 417 FEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDIL 476

Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRI----RDEATCSSFLRIFESEGCKMLEMSCEEHD 179
           CTHPMFGPESG+NGW + AFV++KVRI    R ++ C+SFL IF  EGC+M+EMSC EHD
Sbjct: 477 CTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHD 536

Query: 180 KVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
             AA SQF+THT+GR+L +L ++ST ++TKG+ETL++L E++  DSFDL+ GL+++N  A
Sbjct: 537 WHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNA 596

Query: 240 KQELLDLEAAFEKVKHKL-----QQKMEEVQLEQSPNESKL 275
            ++L     AFE +K +L      Q   E+    SP  +KL
Sbjct: 597 MEQLERFHVAFESLKTQLFGRLHSQHSHELAKSSSPKTTKL 637

Involved in the biosynthesis of tyrosine. Has no prephenate dehydrogenase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 8

>sp|Q9LMR3|TYRA2_ARATH Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1

 Score =  280 bits (717), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/264 (51%), Positives = 186/264 (70%), Gaps = 4/264 (1%)

Query: 9   SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADN 68
           SS LKI ++GFG FGQFL+KT+I+ GH L   SR+D+S   +  G  FF +     E   
Sbjct: 56  SSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHP 115

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
           DV+L+ TSILS   VL S P   L+R TL  DVLSVKE+P+ + ++ LP+E D+LCTHPM
Sbjct: 116 DVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPM 175

Query: 129 FGPESGQNGWKDFAFVYEKVRIRDEAT----CSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
           FGPESG++ W    FVY+KVRI D A+    C  FLRIFE+EGCKM+EMSCE+HD  AA 
Sbjct: 176 FGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAG 235

Query: 185 SQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELL 244
           SQF+THT+GRVL +  ++S+ +NTKG+ETL+ L E++ +DSF+LF GL+++N  A ++L 
Sbjct: 236 SQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLE 295

Query: 245 DLEAAFEKVKHKLQQKMEEVQLEQ 268
            L+ AFE VK +L  ++ +   +Q
Sbjct: 296 RLDMAFESVKKELFGRLHQQYRKQ 319

Involved in the biosynthesis of tyrosine. Has a weak prephenate dehydrogenase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q58029|Y612_METJA Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0612 PE=4 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 14/202 (6%)

Query: 9   SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRT--DHSQLCHRSGISFFSDKRAFLE 65
           ++ L I IIG     G++ A+ +  +G  +  T R       +    G+ F ++    +E
Sbjct: 3   NTNLTISIIGGTDGLGKWFARYLKNKGFNVIVTGRDIEKGKNVEKELGVEFTNNN---IE 59

Query: 66  A--DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
           A    D+++++  I     V+  +  H ++   L+ D+ S+KE P   + + + E + V+
Sbjct: 60  AAKKGDIVIVAVPINVTERVIKEVAPH-VREGCLLMDITSIKEIPSKAMEEHVKEGVTVI 118

Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA 183
            THPMFGP S  +  +    +    + ++    +      + EG K++ +  E+HD++  
Sbjct: 119 PTHPMFGP-STPSLLRQVVILTPSEKHKNTEWFNKVYNFLKKEGAKVIVIPPEKHDRIMG 177

Query: 184 KSQFLTH----TIGRVLSELEI 201
             Q LTH    ++G  L EL +
Sbjct: 178 IVQGLTHFAFISLGATLKELNV 199

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P07023|TYRA_ECOLI T-protein OS=Escherichia coli (strain K12) GN=tyrA PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 6   PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLE 65
           PS    + +G  G G  G+   K +   G+ +R   + D              D+ A + 
Sbjct: 96  PSLRPVVIVG--GGGQMGRLFEKMLTLSGYQVRILEQHDW-------------DRAADIV 140

Query: 66  ADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCT 125
           AD  ++++S  I    +V+  LP   L +  ++ D+ SVK  P   +L  +  +  VL  
Sbjct: 141 ADAGMVIVSVPIHVTEQVIGKLP--PLPKDCILVDLASVKNGPLQAML--VAHDGPVLGL 196

Query: 126 HPMFGPESGQNG-----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDK 180
           HPMFGP+SG        W D          R       FL   +  G ++  +S  EHD+
Sbjct: 197 HPMFGPDSGSLAKQVVVWCDG---------RKPEAYQWFLEQIQVWGARLHRISAVEHDQ 247

Query: 181 ----VAAKSQFLTHTIGRVLSELEIQ 202
               + A   F T   G  L+E  +Q
Sbjct: 248 NMAFIQALRHFATFAYGLHLAEENVQ 273

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O60078|TYR1_SCHPO Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 21/246 (8%)

Query: 11  TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRSGISFFSDKRAF-LEA 66
           T ++GIIGFG  G+  A+ + K G  +    R ++    Q  + +G  +   K  F +  
Sbjct: 4   TFQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNG-GYTVLKDGFQVSR 62

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
            +D IL S     + +V+ +L     +   ++    S K    N   + LPE++D++  H
Sbjct: 63  TSDYILYSVEAEHIDKVV-ALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCH 121

Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDE--ATCSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
            M GP+      K    V  + R  DE     +  L  F+S    ++ +S +EHD++ A 
Sbjct: 122 SMHGPKVNP---KSQPLVIIRHRASDEHFEIVNEILSCFKS---SVVYLSAKEHDRITAD 175

Query: 185 SQFLTH----TIGRVLSELEIQSTSMN--TKGFETL-IRLKESSVNDSFDLFSGLYIHNR 237
           +Q +TH    T+G            +N    G E + + L     +  + +++GL I N 
Sbjct: 176 TQAVTHAAFLTMGLAWHANNQYPWEINRWCGGIENIKMNLSMRIYSSKWHVYAGLAILNP 235

Query: 238 FAKQEL 243
            A++++
Sbjct: 236 EAQRQI 241

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q02287|TYRA_ENTAG T-protein OS=Enterobacter agglomerans GN=tyrA PE=4 SV=1

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 18  GFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSI 77
           G G  G+   K +   G+ ++   + D  Q                L +D  +++IS  I
Sbjct: 106 GKGQMGRLFEKMLGLSGYTVKTLDKEDWPQ-------------AETLLSDAGMVIISVPI 152

Query: 78  LSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG 137
               +V+  LP   L    ++ D+ SVK  P   +L        VL  HPMFGP+SG   
Sbjct: 153 HLTEQVIAQLP--PLPEDCILVDLASVKNRPLQAMLAA--HNGPVLGLHPMFGPDSGSLA 208

Query: 138 -----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH 190
                W D          R       FL   +  G ++  +S  EHD+  A  Q L H
Sbjct: 209 KQVVVWCDG---------RQPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRH 257

Enterobacter agglomerans (taxid: 549)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P20049|TYR1_YEAST Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 22/250 (8%)

Query: 10  STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS--DKRAFLEA 66
           +T  IGIIG G  G   A      G  +    R ++  +L  +   + F        +  
Sbjct: 12  ATKVIGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFELVKNGHLVSR 71

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
            +D I+ S    ++S+++ +      +  T++    S K        + LP++ D++  H
Sbjct: 72  QSDYIIYSVEASNISKIVATYGPSS-KVGTIVGGQTSCKLPEIEAFEKYLPKDCDIITVH 130

Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGC---KMLEMSCEEHDKVAA 183
            + GP+    G +    +  + +  +     SF  +     C   K + ++ EEHDK+ A
Sbjct: 131 SLHGPKVNTEG-QPLVIINHRSQYPE-----SFEFVNSVMACLKSKQVYLTYEEHDKITA 184

Query: 184 KSQFLTH----TIGRVLSELEIQSTSMNTK----GFETL-IRLKESSVNDSFDLFSGLYI 234
            +Q +TH    ++G   ++++I   ++       G E + + +     ++ + +++GL I
Sbjct: 185 DTQAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVYAGLAI 244

Query: 235 HNRFAKQELL 244
            N  A Q++L
Sbjct: 245 TNPSAHQQIL 254

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P20692|TYRA_BACSU Prephenate dehydrogenase OS=Bacillus subtilis (strain 168) GN=tyrA PE=4 SV=2

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 20/188 (10%)

Query: 71  ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFG 130
           ++I+T +     +L  L    ++   LI DV S K+   +   QVLP     +  HPM G
Sbjct: 69  VIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQFVGGHPMAG 128

Query: 131 P-ESGQNGWKDFAF-----VYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
             +SG    K+F F     +    +  D+        + +      +EMS EEHD V + 
Sbjct: 129 SHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDGVTSV 188

Query: 185 SQFLTHTIGRVLSELEIQSTSM-------NTKGFETLIRLKESSVNDSFDLFSGLYIHNR 237
                H +   L      S ++          GF  + R+  SS      ++  + +HN 
Sbjct: 189 ISHFPHIVAASLVHQTHHSENLYPLVKRFAAGGFRDITRIASSSPA----MWRDILLHN- 243

Query: 238 FAKQELLD 245
             K ++LD
Sbjct: 244 --KDKILD 249

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224101219	282	predicted protein [Populus trichocarpa]	0.949	0.925	0.75	1e-115
225448588	272	PREDICTED: arogenate dehydrogenase 1, ch	0.981	0.992	0.726	1e-113
255559573	345	prephenate dehydrogenase, putative [Rici	0.909	0.724	0.759	1e-109
356553747	266	PREDICTED: arogenate dehydrogenase 1, ch	0.952	0.984	0.692	1e-106
357492861	266	Arogenate dehydrogenase [Medicago trunca	0.934	0.966	0.678	1e-102
388513661	266	unknown [Medicago truncatula]	0.934	0.966	0.674	1e-101
357461443	268	Arogenate dehydrogenase [Medicago trunca	0.941	0.966	0.667	1e-100
356540019	274	PREDICTED: arogenate dehydrogenase 1, ch	0.894	0.897	0.678	1e-97
255646052	271	unknown [Glycine max]	0.894	0.907	0.666	2e-96
357432828	271	hypothetical protein [Glycine max]	0.894	0.907	0.662	5e-96

>gi|224101219|ref|XP_002312190.1| predicted protein [Populus trichocarpa] gi|222852010|gb|EEE89557.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/264 (75%), Positives = 230/264 (87%), Gaps = 3/264 (1%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
           LKIGI+GFGPF QFLAK MIKQGH LRATSR+DHS LC   GISFF D   FLEA+NDVI
Sbjct: 22  LKIGIVGFGPFAQFLAKIMIKQGHTLRATSRSDHSSLCQDLGISFFRDTGTFLEANNDVI 81

Query: 72  LISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP 131
           LI TSILSLS+VLN++P+HCL+R  L  DVLSVKEYPR++LL+VLPEE+DVLCTHPMFGP
Sbjct: 82  LICTSILSLSKVLNTMPLHCLKRSPLFVDVLSVKEYPRDILLKVLPEELDVLCTHPMFGP 141

Query: 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191
           ESG+NGWKD AF+YE+VRI+DEATCSSFLRIFE+EGC+MLEMSCEEHD VAA+SQFLTHT
Sbjct: 142 ESGKNGWKDLAFMYERVRIKDEATCSSFLRIFETEGCRMLEMSCEEHDMVAARSQFLTHT 201

Query: 192 IGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFE 251
           IGR+LSE+E++ TSM+TKGFETLI LKES++ DS DLFSGL+++NRFAKQEL +LE + E
Sbjct: 202 IGRILSEMEVKPTSMSTKGFETLIHLKESTMKDSSDLFSGLFVYNRFAKQELKNLELSLE 261

Query: 252 KVKHKLQQKMEEVQLEQSPNESKL 275
           KVK  LQ KM E   EQ+ NESK 
Sbjct: 262 KVKQMLQDKMTE---EQNLNESKF 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448588|ref|XP_002274031.1| PREDICTED: arogenate dehydrogenase 1, chloroplastic [Vitis vinifera] gi|297736539|emb|CBI25410.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 233/271 (85%), Gaps = 1/271 (0%)

Query: 1   MAVSSPSS-SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSD 59
           MAVSS S  S TL+IGI+GFGPFGQFLAKTM+KQGH L ATSR+DHSQLC R GISFF  
Sbjct: 1   MAVSSSSPLSRTLRIGIVGFGPFGQFLAKTMMKQGHTLTATSRSDHSQLCARLGISFFRG 60

Query: 60  KRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE 119
              F+EA+NDVI++ TSILSL+EVL SLP+HCL+R TL ADVLSVKE PR VLLQVLPEE
Sbjct: 61  MNEFIEAENDVIMLCTSILSLTEVLESLPLHCLKRPTLFADVLSVKEGPREVLLQVLPEE 120

Query: 120 MDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHD 179
            DVLCTHPMFGPESG++GW   AF+YE+VRIRDEATCSSFL IFESEGC+MLEMSCEEHD
Sbjct: 121 SDVLCTHPMFGPESGRDGWNGLAFMYERVRIRDEATCSSFLHIFESEGCRMLEMSCEEHD 180

Query: 180 KVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
           K+AA+SQFLTHTIGR+LSE+EI+ T ++TKGF+TLI+LK+S++ DSFDL+SGL++HN+FA
Sbjct: 181 KLAARSQFLTHTIGRILSEMEIEPTPIDTKGFQTLIQLKDSTIRDSFDLYSGLFVHNKFA 240

Query: 240 KQELLDLEAAFEKVKHKLQQKMEEVQLEQSP 270
           KQEL +L  AFEKVK KL++  E+  L   P
Sbjct: 241 KQELNNLVLAFEKVKQKLEEMNEKSDLSMQP 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559573|ref|XP_002520806.1| prephenate dehydrogenase, putative [Ricinus communis] gi|223539937|gb|EEF41515.1| prephenate dehydrogenase, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 222/254 (87%), Gaps = 4/254 (1%)

Query: 3   VSSPSSSST---LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSD 59
           +S P SS+T   LKIGIIGFG FGQFLAKTMIKQGH LRATSR+DHS LC   GIS+F D
Sbjct: 1   MSPPPSSTTRRSLKIGIIGFGRFGQFLAKTMIKQGHTLRATSRSDHSHLCEDLGISYFRD 60

Query: 60  KRAFLEADNDVILISTSILSLSEVLNSLPVHCLQR-RTLIADVLSVKEYPRNVLLQVLPE 118
              FLEADNDVILI TSILSL EVLNS+P+H L+R RTL ADVLSVKEYPR+VL +VLPE
Sbjct: 61  VIKFLEADNDVILICTSILSLQEVLNSMPLHSLKRQRTLFADVLSVKEYPRDVLTKVLPE 120

Query: 119 EMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEH 178
           E D+LCTHPMFGPESG++GWKD AFVY+KVR+RDEATCSSFL+IFE+EGC+MLEMSCEEH
Sbjct: 121 ESDILCTHPMFGPESGKHGWKDLAFVYDKVRVRDEATCSSFLKIFETEGCRMLEMSCEEH 180

Query: 179 DKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRF 238
           D++AAKSQFLTHTIGR+ SE+EI+ST M+TKGFETL+RLK+ +  DSFDLFSGL++ NRF
Sbjct: 181 DRMAAKSQFLTHTIGRIFSEMEIKSTPMSTKGFETLVRLKDDTTKDSFDLFSGLFLCNRF 240

Query: 239 AKQELLDLEAAFEK 252
           AKQEL +LE A EK
Sbjct: 241 AKQELKNLELALEK 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553747|ref|XP_003545214.1| PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Glycine max]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/263 (69%), Positives = 227/263 (86%), Gaps = 1/263 (0%)

Query: 8   SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEAD 67
           S+ +LKIG++GFG FGQFLAKTMIKQGH LRATSRTD+S LC   GI FF D  AFLEAD
Sbjct: 2   STWSLKIGVVGFGSFGQFLAKTMIKQGHTLRATSRTDYSLLCLPMGIQFFRDVAAFLEAD 61

Query: 68  NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
           NDVIL+ TSILSLSEVL+S+P+ CL+R TL  DVLSVKE+PRN+L++VLPEE D+LCTHP
Sbjct: 62  NDVILVCTSILSLSEVLSSMPLTCLKRSTLFVDVLSVKEHPRNLLIKVLPEESDILCTHP 121

Query: 128 MFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQF 187
           MFGP+SG++GW+D  FVY+KVRIRDEA CSSFL IF SEGC+ML+MSCEEHDK+AAKSQF
Sbjct: 122 MFGPDSGKDGWQDLTFVYDKVRIRDEAICSSFLHIFASEGCRMLQMSCEEHDKIAAKSQF 181

Query: 188 LTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLE 247
           +THTIGR L+E++I+ST ++TKGF +L++LK++++ DSFDL+SGL++HNRFA QEL +LE
Sbjct: 182 ITHTIGRTLAEMDIKSTPIDTKGFHSLVQLKDTTIRDSFDLYSGLFLHNRFAVQELENLE 241

Query: 248 AAFEKVKHKL-QQKMEEVQLEQS 269
            A  KVK  L Q+K EE+ LE++
Sbjct: 242 HALHKVKEMLVQRKSEELGLEKT 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492861|ref|XP_003616719.1| Arogenate dehydrogenase [Medicago truncatula] gi|355518054|gb|AES99677.1| Arogenate dehydrogenase [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/258 (67%), Positives = 219/258 (84%), Gaps = 1/258 (0%)

Query: 7   SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
           S+S +LKIGI+GFG FGQFLAKTMIKQGH L ATSRTD+S  C + GI FF D   F+EA
Sbjct: 2   SNSPSLKIGIVGFGSFGQFLAKTMIKQGHTLTATSRTDYSHTCLQLGIQFFRDVGTFIEA 61

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQR-RTLIADVLSVKEYPRNVLLQVLPEEMDVLCT 125
           +NDVILI TSI+S ++VL+S+P+ CL++  TL  DVLSVKE+PR VLL+VLPEE D+LCT
Sbjct: 62  NNDVILICTSIMSFTKVLSSMPLACLKKPTTLFVDVLSVKEHPREVLLRVLPEESDILCT 121

Query: 126 HPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS 185
           HPMFGPESG+NGWKD  F+Y+KVRI DEATCS+FL IF SEGCKML+MSCEEHDK+AAKS
Sbjct: 122 HPMFGPESGKNGWKDLNFMYDKVRIHDEATCSNFLHIFASEGCKMLQMSCEEHDKIAAKS 181

Query: 186 QFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLD 245
           QF+THTIGR L+E++I+ST ++TKGF+TL +LK +++ DSFDL+SGL++HNRFAKQEL +
Sbjct: 182 QFITHTIGRTLAEMDIESTPIDTKGFQTLTQLKNTTMRDSFDLYSGLFVHNRFAKQELEN 241

Query: 246 LEAAFEKVKHKLQQKMEE 263
           L+ A ++VK  L Q+M E
Sbjct: 242 LQRALDRVKEMLVQRMRE 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513661|gb|AFK44892.1| unknown [Medicago truncatula]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 1/258 (0%)

Query: 7   SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
           S+S +LKIGI+GFG FGQFLAKTMIKQGH L ATSRTD+S  C + GI FF D   F+EA
Sbjct: 2   SNSPSLKIGIVGFGSFGQFLAKTMIKQGHTLTATSRTDYSHTCLQLGIQFFRDVGTFIEA 61

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQR-RTLIADVLSVKEYPRNVLLQVLPEEMDVLCT 125
           +NDVILI  SI+S ++VL+S+P+ CL++  TL  DVLSVKE+PR VLL+VLPEE D+LCT
Sbjct: 62  NNDVILICASIMSFTKVLSSMPLACLKKPTTLFVDVLSVKEHPREVLLRVLPEESDILCT 121

Query: 126 HPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS 185
           HPMFGPESG+NGWKD  F+Y+KVRI DEATCS+FL IF SEGCKML+MSCEEHDK+AAKS
Sbjct: 122 HPMFGPESGKNGWKDLNFMYDKVRIHDEATCSNFLHIFASEGCKMLQMSCEEHDKIAAKS 181

Query: 186 QFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLD 245
           QF+THTIGR L+E++I+ST ++TKGF+TL +LK +++ DSFDL+SGL++HNRFAKQEL +
Sbjct: 182 QFITHTIGRTLAEMDIESTPIDTKGFQTLTQLKNTTMRDSFDLYSGLFVHNRFAKQELEN 241

Query: 246 LEAAFEKVKHKLQQKMEE 263
           L+ A ++VK  L Q+M E
Sbjct: 242 LQRALDRVKEMLVQRMRE 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461443|ref|XP_003601003.1| Arogenate dehydrogenase [Medicago truncatula] gi|355490051|gb|AES71254.1| Arogenate dehydrogenase [Medicago truncatula]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/259 (66%), Positives = 217/259 (83%)

Query: 7   SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
           SSS +LKIGI+GFG FGQFLA TMIKQGH L ATSRTD+SQLC + GI FF D  AFL+A
Sbjct: 3   SSSKSLKIGIVGFGTFGQFLANTMIKQGHTLTATSRTDYSQLCDQMGIHFFRDITAFLDA 62

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
           D DVIL+ TSI SLSEV+ S+P+ CL+R TL  DVLSVKE+P+N+LL+VLPEE D+LCTH
Sbjct: 63  DMDVILLCTSISSLSEVVGSMPLACLKRPTLFVDVLSVKEHPKNLLLKVLPEESDILCTH 122

Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQ 186
           PMFGP SG+NGW++  F+++KVRI+DE TCS FL+IF SEGCKM+EMSCEEHDK AAKSQ
Sbjct: 123 PMFGPVSGKNGWQNLTFMFDKVRIKDEVTCSKFLQIFASEGCKMVEMSCEEHDKAAAKSQ 182

Query: 187 FLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDL 246
           F+THTIGR L+E++I+ST ++TKGF+TL+ LK+  +  SFDL+SGL+++NRFA+QEL +L
Sbjct: 183 FITHTIGRTLAEMDIKSTPIDTKGFQTLVELKKPVMGCSFDLYSGLFVYNRFARQELENL 242

Query: 247 EAAFEKVKHKLQQKMEEVQ 265
           E A  KVK  L Q+++E Q
Sbjct: 243 EHALHKVKEMLVQRIDEGQ 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540019|ref|XP_003538489.1| PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Glycine max]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/246 (67%), Positives = 208/246 (84%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
           LKIGI+GFG FGQFLAKTMIKQGH L ATSR+D+SQLC + GI FF D  AFL AD DVI
Sbjct: 13  LKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSQLCLQMGIHFFRDVSAFLAADIDVI 72

Query: 72  LISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP 131
           ++ TSILSLSEV+ S+P+  L+R TL  DVLSVKE+PR +LL+ LPE+ D+LCTHPMFGP
Sbjct: 73  VLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGP 132

Query: 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191
           ++  NGW D  F+Y+KVRIRDEATCSSF++IF +EGCKM++MSCEEHD+ AAKSQF+THT
Sbjct: 133 QTANNGWTDHTFMYDKVRIRDEATCSSFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHT 192

Query: 192 IGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFE 251
           IGR L E++IQST ++TKGFETL++LKE+ + +SFDL+SGL+++NRFA+QEL +LE AF 
Sbjct: 193 IGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHAFY 252

Query: 252 KVKHKL 257
           KVK  L
Sbjct: 253 KVKETL 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646052|gb|ACU23513.1| unknown [Glycine max]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/246 (66%), Positives = 208/246 (84%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
           LKIGI+GFG FGQFLAKTMIKQGH L ATSR+D+S+LC + GI FF D  AFL AD DVI
Sbjct: 10  LKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSELCLQMGIHFFRDVSAFLTADIDVI 69

Query: 72  LISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP 131
           ++ TSILSLSEV+ S+P+  L+R TL  DVLSVKE+PR +LL+ LPE+ D+LCTHPMFGP
Sbjct: 70  VLCTSILSLSEVVGSIPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGP 129

Query: 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191
           ++ +NGW D  F+Y+KVRIRDEATCS+F++IF +EGCKM++MSCEEHD+ AAKSQF+THT
Sbjct: 130 QTAKNGWTDHTFMYDKVRIRDEATCSNFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHT 189

Query: 192 IGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFE 251
           IGR L E++IQST ++TKGFETL++LKE+ + +SFDL+SGL+++NRFA+QEL +LE A  
Sbjct: 190 IGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHALH 249

Query: 252 KVKHKL 257
           KVK  L
Sbjct: 250 KVKETL 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357432828|gb|AET79242.1| hypothetical protein [Glycine max]

 Score =  356 bits (914), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 163/246 (66%), Positives = 208/246 (84%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
           LKIGI+GFG FGQFLAKTMIKQGH L ATSR+D+S+LC + GI FF D  AFL AD DVI
Sbjct: 10  LKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSELCLQMGIHFFRDVSAFLTADIDVI 69

Query: 72  LISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP 131
           ++ TSILSLSEV+ S+P+  L+R TL  DVLSVKE+PR +LL+ LPE+ D+LCTHPMFGP
Sbjct: 70  VLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGP 129

Query: 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191
           ++ +NGW D  F+Y+KVRIRD+ATCS+F++IF +EGCKM++MSCEEHD+ AAKSQF+THT
Sbjct: 130 QTAKNGWTDHTFMYDKVRIRDQATCSNFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHT 189

Query: 192 IGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFE 251
           IGR L E++IQST ++TKGFETL++LKE+ + +SFDL+SGL+++NRFA+QEL +LE A  
Sbjct: 190 IGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHALH 249

Query: 252 KVKHKL 257
           KVK  L
Sbjct: 250 KVKETL 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2183532	640	AT5G34930 [Arabidopsis thalian	0.985	0.423	0.464	1.8e-62
TAIR|locus:2036164	358	AT1G15710 [Arabidopsis thalian	0.945	0.726	0.462	1.9e-58
TIGR_CMR|CBU_0984	258	CBU_0984 "prephenate dehydroge	0.629	0.670	0.347	7e-22
TIGR_CMR|SPO_1379	264	SPO_1379 "prephenate dehydroge	0.687	0.715	0.272	1.1e-10
TIGR_CMR|DET_0460	287	DET_0460 "prephenate dehydroge	0.538	0.515	0.277	0.00053

TAIR|locus:2183532 AT5G34930 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 130/280 (46%), Positives = 179/280 (63%)

Query:     5 SPSSSSTLKXXXXXXXXXXXXLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFL 64
             S +  S LK            L KTM+KQGH + A SR+D++    + G+S+FSD     
Sbjct:   358 SVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDLF 417

Query:    65 EADNDVXXXXXXXXXXXEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC 124
             E   +V           +VL SLP   L+R TL  DVLSVKE+PRN+ LQ LP++ D+LC
Sbjct:   418 EEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILC 477

Query:   125 THPMFGPESGQNGWKDFAFVYEKVRI----RDEATCSSFLRIFESEGCKMLEMSCEEHDK 180
             THPMFGPESG+NGW + AFV++KVRI    R ++ C+SFL IF  EGC+M+EMSC EHD 
Sbjct:   478 THPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHDW 537

Query:   181 VAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK 240
              AA SQF+THT+GR+L +L ++ST ++TKG+ETL++L E++  DSFDL+ GL+++N  A 
Sbjct:   538 HAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNAM 597

Query:   241 QELLDLEAAFEKVKHKL-----QQKMEEVQLEQSPNESKL 275
             ++L     AFE +K +L      Q   E+    SP  +KL
Sbjct:   598 EQLERFHVAFESLKTQLFGRLHSQHSHELAKSSSPKTTKL 637

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006571 "tyrosine biosynthetic process" evidence=IEA;ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006567 "threonine catabolic process" evidence=RCA

TAIR|locus:2036164 AT1G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 122/264 (46%), Positives = 168/264 (63%)

Query:     9 SSTLKXXXXXXXXXXXXLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADN 68
             SS LK            L+KT+I+ GH L   SR+D+S   +  G  FF +     E   
Sbjct:    56 SSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHP 115

Query:    69 DVXXXXXXXXXXXEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
             DV            VL S P   L+R TL  DVLSVKE+P+ + ++ LP+E D+LCTHPM
Sbjct:   116 DVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPM 175

Query:   129 FGPESGQNGWKDFAFVYEKVRIRDEAT----CSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
             FGPESG++ W    FVY+KVRI D A+    C  FLRIFE+EGCKM+EMSCE+HD  AA 
Sbjct:   176 FGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAG 235

Query:   185 SQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELL 244
             SQF+THT+GRVL +  ++S+ +NTKG+ETL+ L E++ +DSF+LF GL+++N  A ++L 
Sbjct:   236 SQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLE 295

Query:   245 DLEAAFEKVKHKLQQKMEEVQLEQ 268
              L+ AFE VK +L  ++ +   +Q
Sbjct:   296 RLDMAFESVKKELFGRLHQQYRKQ 319

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0006571 "tyrosine biosynthetic process" evidence=IEA;ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006567 "threonine catabolic process" evidence=RCA

TIGR_CMR|CBU_0984 CBU_0984 "prephenate dehydrogenase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 64/184 (34%), Positives = 102/184 (55%)

Query:    92 LQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIR 151
             L ++T + DV SVK YP  ++   LP  + ++ THP+FGP+S Q        +    R  
Sbjct:    79 LIKKTTVIDVCSVKCYPVEIMQAHLPPSVGIIATHPLFGPDSLQKA--QLKMMMHPAR-- 134

Query:   152 DEATCSSFLR-IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKG 210
             D   C  F +  F S+  K+LEM+ ++HD+ +A+SQ +TH IGR L  +  QST M+T G
Sbjct:   135 DTHDCYEFWKNYFSSKKIKILEMTPDQHDRFSARSQSITHFIGRTLELMGSQSTEMDTIG 194

Query:   211 FETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQSP 270
             ++ L+ +   + ND +DLF  L   N +A Q + +     EK  H LQ+++   +L   P
Sbjct:   195 YKNLLAVMAQTCNDKWDLFLDLKRFNPYAAQTIGEF---IEKSIH-LQKEI--TKLSPFP 248

Query:   271 NESK 274
             + S+
Sbjct:   249 DASR 252

GO:0006571 "tyrosine biosynthetic process" evidence=ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

TIGR_CMR|SPO_1379 SPO_1379 "prephenate dehydrogenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 164 (62.8 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 54/198 (27%), Positives = 91/198 (45%)

Query:    52 SGISFFSDKRAFLEADNDVXXXXXXXXXXXEVLNSLPVHCLQRRTLIADVLSVKEYPRNV 111
             +G+S  S   A   A  D+           E   ++  H L+   ++ADV SVK  P  +
Sbjct:    61 AGLSIASQAEA---AGCDLVILAMPVAGIAEACRAIAPH-LRPGAVVADVGSVKMTPAAI 116

Query:   112 LLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKML 171
             +   LP  + ++ THP+FGP+S ++G          +R R     ++FLR     G +++
Sbjct:   117 MQATLPGHVALIGTHPLFGPQSARHGIAGHKIALCPLRGRAHLPVAAFLRA--RLGLRVI 174

Query:   172 EMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSG 231
               + E HD+ AA  Q LTH I + ++ +      M T  F+ L +  E   +D   + + 
Sbjct:   175 LTTPEAHDREAATVQGLTHLIAQAMNRMGPLPDRMTTASFDLLKQAVEMVRHDPPGVLAA 234

Query:   232 LYIHNRFA---KQELLDL 246
             +   N FA   ++E L L
Sbjct:   235 IESANPFAPRVREEFLGL 252

GO:0006571 "tyrosine biosynthetic process" evidence=ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

TIGR_CMR|DET_0460 DET_0460 "prephenate dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 111 (44.1 bits), Expect = 0.00053, P = 0.00053
 Identities = 45/162 (27%), Positives = 74/162 (45%)

Query:    97 LIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATC 156
             ++ D+ SVKE P  ++ Q LP     L THP+FGP  G    K + F+        E   
Sbjct:    86 MVFDLCSVKERPVELMHQYLPH-CRTLGTHPVFGP--GAKSLKGYNFILTPTT-GAETEL 141

Query:   157 SSFLRIF-ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKG----- 210
             +  ++I+ E  G  +  +S EEHD++ +    L H I  V ++  +        G     
Sbjct:   142 AEKVKIWLEKHGSTVSLISPEEHDRLMSVVLGLAHFIAIVSADTLLGQNLPGIAGAGGTT 201

Query:   211 FETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEK 252
             F  L  L +S + +  +L++ L ++      +L  LEA F K
Sbjct:   202 FRLLDTLTKSVLTEDPNLYASLQVN----MPKLPGLEADFIK 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       252   0.00082  114 3  11 22  0.44    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.11u 0.10s 22.21t   Elapsed:  00:00:01
  Total cpu time:  22.11u 0.10s 22.21t   Elapsed:  00:00:01
  Start:  Sat May 11 02:18:06 2013   End:  Sat May 11 02:18:07 2013

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1.12	0.737
3rd Layer	1.3.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PLN02256	304	PLN02256, PLN02256, arogenate dehydrogenase	1e-159
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	1e-102
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	1e-101
COG0287	279	COG0287, TyrA, Prephenate dehydrogenase [Amino aci	5e-22
PRK08655	437	PRK08655, PRK08655, prephenate dehydrogenase; Prov	3e-17
pfam02153	258	pfam02153, PDH, Prephenate dehydrogenase	2e-10
PRK11199	374	PRK11199, tyrA, bifunctional chorismate mutase/pre	2e-06
PRK07502	307	PRK07502, PRK07502, cyclohexadienyl dehydrogenase;	2e-05
PRK08507	275	PRK08507, PRK08507, prephenate dehydrogenase; Vali	2e-05
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	3e-05
PRK14806	735	PRK14806, PRK14806, bifunctional cyclohexadienyl d	7e-05
PRK06444	197	PRK06444, PRK06444, prephenate dehydrogenase; Prov	1e-04
PRK07417	279	PRK07417, PRK07417, arogenate dehydrogenase; Revie	2e-04
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	0.004

>gnl|CDD|215144 PLN02256, PLN02256, arogenate dehydrogenase

 Score =  443 bits (1142), Expect = e-159
 Identities = 155/266 (58%), Positives = 199/266 (74%), Gaps = 4/266 (1%)

Query: 7   SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
             S  LKIGI+GFG FGQFLAKT +KQGH + ATSR+D+S +    G+SFF D   F E 
Sbjct: 32  EKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEE 91

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
             DV+L+ TSILS   VL SLP+  L+R TL  DVLSVKE+P+N+LLQVLPEE D+LCTH
Sbjct: 92  HPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTH 151

Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDE----ATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
           PMFGPESG+ GW    FVY+KVRI DE    A C  FL IFE EGC+M+EMSCEEHD+ A
Sbjct: 152 PMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYA 211

Query: 183 AKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQE 242
           A SQF+THT+GR+L ++E++ST +NTKG+ETL+RL E++ +DSFDL+ GL+++N  A +E
Sbjct: 212 AGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENTSSDSFDLYYGLFMYNPNATEE 271

Query: 243 LLDLEAAFEKVKHKLQQKMEEVQLEQ 268
           L  LE AF+ VK +L  ++ +V  +Q
Sbjct: 272 LERLELAFDSVKKQLFGRLHDVLRKQ 297

Length = 304

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score =  311 bits (798), Expect = e-102
 Identities = 141/270 (52%), Positives = 194/270 (71%), Gaps = 4/270 (1%)

Query: 4   SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAF 63
           S+P +++ LKI IIGFG +GQFLAKT+I QGH + A SR+DHS      G+SFF D    
Sbjct: 45  SNPDNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDL 104

Query: 64  LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
            E   DVIL+ TSI+S   VL SLP+  L+R TL  DVLSVKE+ +N+LL  LPE+ D++
Sbjct: 105 CERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDII 164

Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRIRDE----ATCSSFLRIFESEGCKMLEMSCEEHD 179
           C+HPMFGP+S ++GW    FVYEKVRI +E    + C SFL +FE EGCKM+EMSC EHD
Sbjct: 165 CSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHD 224

Query: 180 KVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
           K AA+SQF+THT+GRVL  L+++ST +NTKG+E+L+ L E++  DSFDL+ GL+++N+ +
Sbjct: 225 KYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNS 284

Query: 240 KQELLDLEAAFEKVKHKLQQKMEEVQLEQS 269
            + L  L+ AFE ++ +L  ++  V  +Q 
Sbjct: 285 LEMLERLDLAFEALRKQLFGRLHGVVRKQL 314

Length = 667

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score =  308 bits (791), Expect = e-101
 Identities = 145/269 (53%), Positives = 193/269 (71%), Gaps = 4/269 (1%)

Query: 4   SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAF 63
              +  S LKI I+GFG FGQFLAKTM+KQGH + A SR+D+S    + G+S+FSD    
Sbjct: 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDL 421

Query: 64  LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
            E   +VIL+ TSILS  +VL SLP   L+R TL  DVLSVKE+PRN+ LQ LP++ D+L
Sbjct: 422 CEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL 481

Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRI----RDEATCSSFLRIFESEGCKMLEMSCEEHD 179
           CTHPMFGPESG+NGW + AFV++KVRI    R  + C SFL IF  EGC+M+EMSC EHD
Sbjct: 482 CTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHD 541

Query: 180 KVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
             AA SQF+THT+GR+L +L ++ST +NTKG+ETL+ L E++  DSFDL+ GL+++N  A
Sbjct: 542 WHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVENTAGDSFDLYYGLFMYNVNA 601

Query: 240 KQELLDLEAAFEKVKHKLQQKMEEVQLEQ 268
            ++L  L+ AFE +K +L  ++  V  +Q
Sbjct: 602 MEQLERLDLAFESLKKQLFGRLHGVLRKQ 630

Length = 667

>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]

 Score = 92.4 bits (230), Expect = 5e-22
 Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 18/264 (6%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQGH---ILRATSRTDHSQLCHRSGISFFSDKRAFLEADN- 68
           K+GI+G G  G  LA+ + + G    I+         +     G+          EA   
Sbjct: 5   KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAE 64

Query: 69  -DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
            D+++++  I +  EVL  L  H L++  ++ DV SVK      + + LP ++  +  HP
Sbjct: 65  ADLVIVAVPIEATEEVLKELAPH-LKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP 123

Query: 128 MFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQF 187
           MFGPE+    +++   V       ++       R++E+ G +++EM  EEHD+V A    
Sbjct: 124 MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSH 183

Query: 188 LTH----TIGRVLSELEIQSTSMN---TKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK 240
           L H     +   L++LE +   +    + GF  + R+  S      D+     + N+ A 
Sbjct: 184 LPHAAALALANALAKLETEELLVLKLASGGFRDITRIASSDPEMYADIQ----LSNKEAL 239

Query: 241 QELLD-LEAAFEKVKHKLQQKMEE 263
            E ++    + +++K  ++    E
Sbjct: 240 LEAIERFAKSLDELKELIENGDAE 263

Length = 279

>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 21/202 (10%)

Query: 12  LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLC---HRSGISFFSDKRAFLEAD 67
           +KI IIG  G  G++ A+ + ++G  +  T R D  +        G+ + +D     + D
Sbjct: 1   MKISIIGGTGGLGKWFARFLKEKGFEVIVTGR-DPKKGKEVAKELGVEYANDNIDAAK-D 58

Query: 68  NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
            D+++IS  I    +V+  +  H ++  +L+ DV SVKE P   + +  PE +++L THP
Sbjct: 59  ADIVIISVPINVTEDVIKEVAPH-VKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHP 117

Query: 128 MFGPES----GQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA 183
           MFGP +    GQ        +      R            E EG +++  S EEHD++ +
Sbjct: 118 MFGPRTPSLKGQV------VILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMS 171

Query: 184 KSQFLTH----TIGRVLSELEI 201
             Q LTH    +I   L  L +
Sbjct: 172 VVQGLTHFAYISIASTLKRLGV 193

Length = 437

>gnl|CDD|216906 pfam02153, PDH, Prephenate dehydrogenase

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 59  DKRAFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118
              A  EAD  +++++  I    EVL  L  H L+   LI DV SVK        Q+L +
Sbjct: 39  SISAVQEAD--IVVLAVPIEVTLEVLKELAPH-LKEGALITDVGSVKVKIVEDAEQLLCD 95

Query: 119 EMDVLCTHPMFGPE-SGQNGWKDFAFVYEKVRI-RDEATCSSFL----RIFESEGCKMLE 172
            +  +  HPM G E SG +  +   F    V +   E T +  L     + E  G K++ 
Sbjct: 96  GVGFIGGHPMAGTEKSGPDAARANLFEGAPVILTPTEKTDTEALALVRELLEGLGAKVIL 155

Query: 173 MSCEEHDKVAAKSQFLTH----TIGRVLSELEI---QSTSMNTKGFETLIRLKESSVNDS 225
           MS EEHD+V A    L H     +   L EL +    +  +   GF  + R+  S+    
Sbjct: 156 MSPEEHDRVVAVVSHLPHVVASALAATLEELGVDIELARKLAGGGFRDMTRIAASNPLLW 215

Query: 226 FDLFSGLYIHNRFAKQELLD 245
            D+       N  A  E LD
Sbjct: 216 RDILL----ENARAVLEALD 231

Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis. Length = 258

>gnl|CDD|183035 PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 66  ADNDVILISTSILSLSEV---LNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVL--PEEM 120
           AD  ++++S  I    EV   L  LP  C+     + D+ SVK  P   +L     P   
Sbjct: 141 ADAGMVIVSVPIHLTEEVIARLPPLPEDCI-----LVDLTSVKNAPLQAMLAAHSGP--- 192

Query: 121 DVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDK 180
            VL  HPMFGP+ G         V      R        L   +  G ++  +S  EHD+
Sbjct: 193 -VLGLHPMFGPDVG--SLAKQVVVV--CDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQ 247

Query: 181 VAAKSQFLTH 190
             A  Q L H
Sbjct: 248 NMAFIQALRH 257

Length = 374

>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 41/259 (15%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHSQLCHRSGI-SFFSDKRAFLEADN 68
           ++ +IG G  G  LA+ + + G    I+ A    +        G+    +   A      
Sbjct: 8   RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGA 67

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQV---LPEEMDVLCT 125
           D++++   + +   V   +  H L+   ++ DV SVK    +V+  +   LPE +  +  
Sbjct: 68  DLVILCVPVGASGAVAAEIAPH-LKPGAIVTDVGSVK---ASVIAAMAPHLPEGVHFIPG 123

Query: 126 HPMFG-----PESGQNGWKDFAFVYEK-------VRIRDEATCSSFLRIFESEGCKMLEM 173
           HP+ G     P++G      FA ++E            D A  +     + + G ++ EM
Sbjct: 124 HPLAGTEHSGPDAG------FAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM 177

Query: 174 SCEEHDKVAAKSQFLTH----TIGRVLSELEIQSTSMNTK----GFETLIRLKESSVNDS 225
             E HD V A +  L H    TI     +LE  + S   K    GF    R+  S     
Sbjct: 178 DPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRIAASDPTMW 237

Query: 226 FDLFSGLYIHNRFAKQELL 244
            D+F    +HN+ A  E+L
Sbjct: 238 RDVF----LHNKDAVLEML 252

Length = 307

>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 35/271 (12%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHSQLCHRSGISFFSDKRAFLE--A 66
           +KIGIIG G  G  L   + ++G    +        H +     G+    D+    E   
Sbjct: 1   MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV---DEIVSFEELK 57

Query: 67  DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEM--DVLC 124
             DVI ++  + ++ E+L  L    ++  T I D+ S K      +++ +P+ +  + + 
Sbjct: 58  KCDVIFLAIPVDAIIEILPKLLD--IKENTTIIDLGSTKAK----IIESVPKHIRKNFIA 111

Query: 125 THPM-----FGPESGQNG-WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEH 178
            HPM      GP++   G ++    V   V    E        IF   G +++ M  +EH
Sbjct: 112 AHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEH 171

Query: 179 DKVAAKSQFLTHTIG-----RVLSELEIQST-SMNTKGFETLIRLKESSVNDSFDLFSGL 232
           D  AA    L H I       VL E + ++   +   GF ++ RL +SS     D+F   
Sbjct: 172 DLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRLAKSSPAMWSDIFK-- 229

Query: 233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEE 263
              N   K+ +L+    F K   + +Q +E 
Sbjct: 230 --QN---KENVLEAIDEFIKELEQFKQLIEN 255

Length = 275

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS------QLCHRSGISFFSDKRAFLE 65
          KIGIIG G  G+ LA+ +   GH ++ A SR          +L      +  S++ A  E
Sbjct: 1  KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEEL--GVKATAVSNEEAVEE 58

Query: 66 ADNDVILISTSILSLSEVLNSLPVHCLQRRTLI 98
          A  DV+ ++       EVL  L    L+ + +I
Sbjct: 59 A--DVVFLAVKPEDAPEVLAELA-DLLKGKLVI 88

Length = 93

>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQGHI-------LRATSRTDHSQLCHRSGI--SFFSDKRAF 63
           ++ +IG G  G   AK + ++G          RA S      L    G+      D    
Sbjct: 5   RVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL----GVIDRGEEDLAEA 60

Query: 64  LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-MDV 122
           + +  DVI+++  +L++ +VL  L    L    ++ DV S K    +    V  E     
Sbjct: 61  V-SGADVIVLAVPVLAMEKVLADLK-PLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGF 118

Query: 123 LCTHPMFGPE-SGQNGWKDFAFVYEKVRI-----RDEATCSSFLRIFESEGCKMLEMSCE 176
           +  HP+ G E SG +      F   KV +      D A  +   R++ + G  +L M   
Sbjct: 119 VPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVA 178

Query: 177 EHDKVAAKSQFLTHTI 192
            HD+V A +  L H +
Sbjct: 179 HHDEVLAATSHLPHLL 194

Length = 735

>gnl|CDD|102381 PRK06444, PRK06444, prephenate dehydrogenase; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 126 HPMFGPESGQNGW-KDFAFVYE--KVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
           HP+FGP S  +G  +   F+ +  +    +E        +F   G   +EM+ +EHD + 
Sbjct: 76  HPLFGPMSYNDGVHRTVIFINDISRDNYLNEIN-----EMFR--GYHFVEMTADEHDLLM 128

Query: 183 AKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
           ++     + I  +L +++   + + T  F+ L+ + E    +++++F+   I+N + 
Sbjct: 129 SEIMVKPYIISMILKDIK---SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT 182

Length = 197

>gnl|CDD|180970 PRK07417, PRK07417, arogenate dehydrogenase; Reviewed

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 43/195 (22%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS----GISFFSDKRAFLEAD 67
           +KIGI+G G  G  L   +   GH +   SR      C R+     +   S   + L  D
Sbjct: 1   MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSR--RESTCERAIERGLVDEASTDLSLL-KD 57

Query: 68  NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKE---------YPRNVLLQVLPE 118
            D+++++  I  L      L +  L    ++ DV SVK          +PR V       
Sbjct: 58  CDLVILALPIGLLLPPSEQL-IPALPPEAIVTDVGSVKAPIVEAWEKLHPRFV------- 109

Query: 119 EMDVLCTHPMFGP-----ESGQNGWKDFAFVYEK-VRIRDEATCSSFLRIFE----SEGC 168
                 +HPM G      E+GQ G     F     V    E T  + L I E    S G 
Sbjct: 110 -----GSHPMAGTAESGVEAGQRG----LFKNRPWVLTPTENTDLNALAIVEELAVSLGS 160

Query: 169 KMLEMSCEEHDKVAA 183
           K+     EEHD+  A
Sbjct: 161 KIYTADPEEHDRAVA 175

Length = 279

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFS----DKRAFLEADND 69
          + I+G G  GQ LA+ ++ QG  +  T+R+   +L                +  L AD D
Sbjct: 1  VLILGCGYLGQRLARQLLAQGWQVTGTTRSP-EKLAADRPAGVTPLAADLTQPGLLADVD 59

Query: 70 VILIST 75
           ++IS 
Sbjct: 60 HLVISL 65

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PLN02256	304	arogenate dehydrogenase	100.0
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	100.0
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	100.0
PRK07417	279	arogenate dehydrogenase; Reviewed	100.0
PRK08507	275	prephenate dehydrogenase; Validated	100.0
PRK06545	359	prephenate dehydrogenase; Validated	100.0
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	100.0
PRK08818	370	prephenate dehydrogenase; Provisional	100.0
PRK08655	437	prephenate dehydrogenase; Provisional	100.0
PLN02712	667	arogenate dehydrogenase	100.0
PLN02712	667	arogenate dehydrogenase	100.0
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	100.0
PRK06444	197	prephenate dehydrogenase; Provisional	100.0
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	100.0
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	100.0
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	100.0
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.94
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.93
PLN02688	266	pyrroline-5-carboxylate reductase	99.93
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.93
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.92
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.91
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.89
PRK07680	273	late competence protein ComER; Validated	99.87
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.86
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.86
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.85
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.84
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.84
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.84
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.8
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.79
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.79
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.78
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.78
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.77
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.77
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.77
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.77
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.76
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.75
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.73
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.73
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.72
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.71
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.7
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.7
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.69
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.69
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.69
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.69
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.69
PLN02858	1378	fructose-bisphosphate aldolase	99.66
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.66
PLN02858	1378	fructose-bisphosphate aldolase	99.66
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.66
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.65
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.65
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.65
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.64
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.64
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.62
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.62
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.61
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.6
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.58
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.57
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.55
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.55
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.54
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.54
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.51
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.49
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.48
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.42
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.41
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.41
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.4
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.39
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.37
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.37
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.36
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.35
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.35
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.33
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.33
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.31
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.26
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.26
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.24
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.2
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.17
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.15
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.15
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	99.1
PRK13243	333	glyoxylate reductase; Reviewed	99.1
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.07
PLN03139	386	formate dehydrogenase; Provisional	99.03
PRK07574	385	formate dehydrogenase; Provisional	99.03
PRK12480	330	D-lactate dehydrogenase; Provisional	99.02
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.99
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.98
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.96
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.96
PRK08605	332	D-lactate dehydrogenase; Validated	98.94
PRK06436	303	glycerate dehydrogenase; Provisional	98.93
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.91
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.91
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.91
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.89
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.87
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.85
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.82
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.8
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.78
PLN02928	347	oxidoreductase family protein	98.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.75
PRK05225	487	ketol-acid reductoisomerase; Validated	98.74
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.72
COG5495	289	Uncharacterized conserved protein [Function unknow	98.72
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.71
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.71
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.68
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.68
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.67
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.61
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.6
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.59
PLN02306	386	hydroxypyruvate reductase	98.56
PRK06932	314	glycerate dehydrogenase; Provisional	98.54
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.51
PRK06487	317	glycerate dehydrogenase; Provisional	98.5
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.47
PRK06223	307	malate dehydrogenase; Reviewed	98.46
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	98.46
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.44
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	98.44
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	98.42
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.41
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.37
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.36
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.34
PTZ00117	319	malate dehydrogenase; Provisional	98.33
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.29
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.29
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.23
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.19
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.18
PLN02494	477	adenosylhomocysteinase	98.18
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.16
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.16
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.15
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.15
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.15
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.15
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.14
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.14
PLN02602	350	lactate dehydrogenase	98.11
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.1
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.1
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.08
PRK06141	314	ornithine cyclodeaminase; Validated	98.08
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.08
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.03
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.03
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.02
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.02
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.01
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.0
PRK04148	134	hypothetical protein; Provisional	97.99
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.98
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.93
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.91
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.9
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.9
PRK11579	346	putative oxidoreductase; Provisional	97.9
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.88
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.86
PRK07340	304	ornithine cyclodeaminase; Validated	97.85
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.84
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	97.82
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.81
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.8
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.78
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.77
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.76
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.75
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.75
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.74
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.71
PRK08618	325	ornithine cyclodeaminase; Validated	97.7
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.66
PLN00203	519	glutamyl-tRNA reductase	97.65
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.61
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.61
PRK06046	326	alanine dehydrogenase; Validated	97.61
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.61
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.61
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.6
PRK09496	453	trkA potassium transporter peripheral membrane com	97.59
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.58
PRK15076	431	alpha-galactosidase; Provisional	97.57
PRK05442	326	malate dehydrogenase; Provisional	97.56
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.53
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.51
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.51
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.51
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.51
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.48
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.47
PRK07589	346	ornithine cyclodeaminase; Validated	97.46
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.46
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.44
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.44
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.42
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.42
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.42
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.4
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.4
PRK08291	330	ectoine utilization protein EutC; Validated	97.39
PLN02383	344	aspartate semialdehyde dehydrogenase	97.38
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	97.38
PRK06823	315	ornithine cyclodeaminase; Validated	97.37
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.36
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.35
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.35
PRK06407	301	ornithine cyclodeaminase; Provisional	97.34
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.32
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.32
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.32
PTZ00325	321	malate dehydrogenase; Provisional	97.31
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.31
COG2910	211	Putative NADH-flavin reductase [General function p	97.3
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.3
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.29
PLN00106	323	malate dehydrogenase	97.29
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.27
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.25
PRK10206	344	putative oxidoreductase; Provisional	97.25
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.23
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.23
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.22
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.21
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.18
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.18
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.17
PRK10669	558	putative cation:proton antiport protein; Provision	97.17
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.16
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.15
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.14
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.11
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.09
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.07
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.07
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.07
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.05
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.03
COG2344	211	AT-rich DNA-binding protein [General function pred	97.03
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.02
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.02
PRK05086	312	malate dehydrogenase; Provisional	97.01
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.99
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.97
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.97
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.97
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.97
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.96
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.94
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.94
PRK14982	340	acyl-ACP reductase; Provisional	96.93
PRK09496	453	trkA potassium transporter peripheral membrane com	96.92
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.92
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.9
PRK06349	426	homoserine dehydrogenase; Provisional	96.9
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.89
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.88
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.87
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.87
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.86
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.85
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.85
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.84
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.83
CHL00194	317	ycf39 Ycf39; Provisional	96.82
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.82
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.82
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.81
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.77
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.77
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.77
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.77
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.77
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.76
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.75
PRK07236	386	hypothetical protein; Provisional	96.74
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.73
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	96.73
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.72
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	96.71
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.69
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.68
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
PRK06199	379	ornithine cyclodeaminase; Validated	96.67
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	96.65
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.63
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.61
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.61
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.6
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.6
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.59
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.59
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.54
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.51
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.49
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.49
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.47
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	96.45
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.42
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.41
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.38
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.38
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.38
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.37
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.35
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.34
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.31
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.3
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	96.29
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.28
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.28
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.25
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.22
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.22
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.21
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.2
PRK08163	396	salicylate hydroxylase; Provisional	96.2
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.19
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.16
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.13
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.12
PRK06753	373	hypothetical protein; Provisional	96.11
PRK06270	341	homoserine dehydrogenase; Provisional	96.09
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.07
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.07
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.07
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.06
PF14748	107	P5CR_dimer: Pyrroline-5-carboxylate reductase dime	96.05
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.05
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.02
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.02
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.99
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.95
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.92
PRK08132	547	FAD-dependent oxidoreductase; Provisional	95.91
PRK05868	372	hypothetical protein; Validated	95.91
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.89
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.88
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.86
PRK06847	375	hypothetical protein; Provisional	95.86
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.83
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.82
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.82
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	95.82
PRK06392	326	homoserine dehydrogenase; Provisional	95.81
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.78
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.75
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.74
PRK06185	407	hypothetical protein; Provisional	95.74
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.73
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.71
KOG1495	332	consensus Lactate dehydrogenase [Energy production	95.7
PRK08013	400	oxidoreductase; Provisional	95.67
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.67
PRK07538	413	hypothetical protein; Provisional	95.66
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.65
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.63
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.61
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.58
PRK07045	388	putative monooxygenase; Reviewed	95.55
PRK07588	391	hypothetical protein; Provisional	95.53
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.51
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.44
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.35
PRK06475	400	salicylate hydroxylase; Provisional	95.35
PRK08374	336	homoserine dehydrogenase; Provisional	95.34
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.34
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.34
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.33
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.31
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.31
PRK06126	545	hypothetical protein; Provisional	95.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.27
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.23
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.21
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.19
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.18
PRK09126	392	hypothetical protein; Provisional	95.17
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.15
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.13
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.11
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.09
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.06
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.0
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.99
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	94.99
PRK11728	393	hydroxyglutarate oxidase; Provisional	94.97
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.95
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	94.94
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.93
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.9
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.9
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.89
PLN02477	410	glutamate dehydrogenase	94.87
PRK06184	502	hypothetical protein; Provisional	94.86
PRK07326	237	short chain dehydrogenase; Provisional	94.83
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.82
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	94.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.81
PRK10537	393	voltage-gated potassium channel; Provisional	94.8
PRK12828	239	short chain dehydrogenase; Provisional	94.78
PRK10637	457	cysG siroheme synthase; Provisional	94.77
PLN02985	514	squalene monooxygenase	94.75
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.74
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.72
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	94.72
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	94.7
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	94.67
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.66
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.62
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.62
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	94.62
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.61
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.6
PRK08328	231	hypothetical protein; Provisional	94.6
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	94.57
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.55
PLN03209	576	translocon at the inner envelope of chloroplast su	94.55
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.54
PRK14031	444	glutamate dehydrogenase; Provisional	94.51
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	94.51
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.51
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.5
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.49
PTZ00367	567	squalene epoxidase; Provisional	94.47
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.46
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.46
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	94.45
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.43
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.41
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	94.41
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.33
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	94.31
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.31
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	94.31
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.29
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.28
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.27
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	94.21
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.2
PRK12939	250	short chain dehydrogenase; Provisional	94.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.14
PRK07454	241	short chain dehydrogenase; Provisional	94.1
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	94.08
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	94.08
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	94.08
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.07
COG3349	485	Uncharacterized conserved protein [Function unknow	94.06
PRK08703	239	short chain dehydrogenase; Provisional	94.06
PRK08017	256	oxidoreductase; Provisional	94.05
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.04
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	94.03
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	94.02
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.02
PRK08244	493	hypothetical protein; Provisional	94.0

>PLN02256 arogenate dehydrogenase

Probab=100.00  E-value=4.3e-48  Score=338.97  Aligned_cols=262  Identities=58%  Similarity=0.948  Sum_probs=230.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+.+++|+|||+|.||++++..|.+.|++|++|++++....+.+.|+...++.++++..++|+||+|||++.+.+++.++
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l  112 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL  112 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence            45678999999999999999999999999999999975455666788777777775224699999999999999999987


Q ss_pred             --CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee----ecCChHHHHHHHH
Q 023897           88 --PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV----RIRDEATCSSFLR  161 (275)
Q Consensus        88 --~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~  161 (275)
                        +.  ++++++++|++|+|+.+.+.+++.++.+.+|+++|||+|++.++..+.+.++++++.    ...+++..+++++
T Consensus       113 ~~~~--l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  190 (304)
T PLN02256        113 PLQR--LKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLD  190 (304)
T ss_pred             hhhc--cCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHH
Confidence              34  788999999999999999999998877778999999999998766677787777753    2336678899999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQ  241 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~  241 (275)
                      +|+.+|++++.+++++||+++|++||+||+++.+|.+...+..+++++||||++|++.+.+.++|+||.+|+..|+++++
T Consensus       191 l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria~r~~~~~p~lw~dI~~~N~~~~~  270 (304)
T PLN02256        191 IFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENTSSDSFDLYYGLFMYNPNATE  270 (304)
T ss_pred             HHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHHHhhcCCCHHHHHHHHHHChHHHH
Confidence            99999999999999999999999999999999999987655567999999999999998888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHhhcCCC
Q 023897          242 ELLDLEAAFEKVKHKLQQKMEEVQLEQSPN  271 (275)
Q Consensus       242 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~  271 (275)
                      ++++|++.|+++++.|....-..||+|-=.
T Consensus       271 ~i~~~~~~l~~~~~~l~~~~~~~~~~~~~~  300 (304)
T PLN02256        271 ELERLELAFDSVKKQLFGRLHDVLRKQLFE  300 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence            999999999999999999999999887543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-47  Score=330.20  Aligned_cols=252  Identities=23%  Similarity=0.416  Sum_probs=217.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh---hhHHHHcCceE--ecCh-HHHhccCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH---SQLCHRSGISF--FSDK-RAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~---~~~a~~~g~~~--~~~~-~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ..++|+|+|+|.||+++|+.|++.|+.+.+++++..   .+.+.+.|+..  ..+. .+. ..++|+||+|||...+.++
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~-~~~aD~VivavPi~~~~~~   80 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEA-AAEADLVIVAVPIEATEEV   80 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhh-cccCCEEEEeccHHHHHHH
Confidence            458999999999999999999999998766655542   45666677632  2333 343 4679999999999999999


Q ss_pred             hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHH
Q 023897           84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                      ++++ +.  +++|++|+|++|+|..+.+.+++.++...+|+++||||||+...+.+++..+++|+....+.+.+..+.++
T Consensus        81 l~~l~~~--l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~  158 (279)
T COG0287          81 LKELAPH--LKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRL  158 (279)
T ss_pred             HHHhccc--CCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHH
Confidence            9999 87  99999999999999999999999987655899999999996333567889999999876677789999999


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccc-------cCcccCcchHHHHHHhhcCCCCChhhHHHHHHH
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQ-------STSMNTKGFETLIRLKESSVNDSFDLFSGLYIH  235 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~-------~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~  235 (275)
                      |+.+|++++++++++||++++.+|||||+++++|+....+       ..+|++++||+++|++.++    |+||.+|+.+
T Consensus       159 ~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRia~~~----P~m~~dI~~~  234 (279)
T COG0287         159 WEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRIASSD----PEMYADIQLS  234 (279)
T ss_pred             HHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHHHcCC----hHHHHHHHHh
Confidence            9999999999999999999999999999999999864221       1579999999999999887    9999999999


Q ss_pred             CHHH-HHHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          236 NRFA-KQELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       236 N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |+++ ++.+++|.++|+++++.++.+|.+.|.+.
T Consensus       235 N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~  268 (279)
T COG0287         235 NKEALLEAIERFAKSLDELKELIENGDAEALADL  268 (279)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            9996 59999999999999999999999887653

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=100.00  E-value=1.3e-44  Score=311.58  Aligned_cols=235  Identities=22%  Similarity=0.347  Sum_probs=196.2

Q ss_pred             HHHHHHHCC--CeEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEE
Q 023897           26 LAKTMIKQG--HILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIA   99 (275)
Q Consensus        26 la~~L~~~g--~~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~   99 (275)
                      +|++|+++|  ++|++||+++. ...+.+.|+  ...++ .+. ++++|+||+|||+..+.++++++ ++  ++++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~-~~~~DlvvlavP~~~~~~~l~~~~~~--~~~~~iv~   76 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEA-VEDADLVVLAVPVSAIEDVLEEIAPY--LKPGAIVT   76 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHH-GGCCSEEEE-S-HHHHHHHHHHHHCG--S-TTSEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhH-hcCCCEEEEcCCHHHHHHHHHHhhhh--cCCCcEEE
Confidence            688999998  69999999995 567778887  33333 343 48999999999999999999999 87  89999999


Q ss_pred             eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          100 DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       100 d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      |++|+|..+.+.+++.++.+.+||++|||+||+.++      +.|+|.++++|+...++.+.++.++++++.+|++++.+
T Consensus        77 Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen   77 DVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM  156 (258)
T ss_dssp             E--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred             EeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence            999999999999999888788999999999997543      45789999999887667788999999999999999999


Q ss_pred             ChhHHHHHHHHhhhhHHHHHHHHhhc----ccc---cCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHH
Q 023897          174 SCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ---STSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLD  245 (275)
Q Consensus       174 ~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~  245 (275)
                      ++++||+++|++||+||+++.+|+..    ..+   ...+++++|++++|++.++    |+||.+|+..|++++ +.|++
T Consensus       157 ~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRia~~~----p~l~~~I~~~N~~~~~~~l~~  232 (258)
T PF02153_consen  157 DAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRIASSD----PELWADIFLSNPENLLEALDE  232 (258)
T ss_dssp             -HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGGS-----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhcccccCC----hHHHHHHHHHCHHHHHHHHHH
Confidence            99999999999999999999988872    211   2468999999999999877    999999999999965 99999


Q ss_pred             HHHHHHHHHHHHhcchhHHHhhc
Q 023897          246 LEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       246 ~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |+++|++++++|+++|.++|++.
T Consensus       233 ~~~~L~~l~~~l~~~d~~~l~~~  255 (258)
T PF02153_consen  233 FIKELNELREALEAGDEEELEEL  255 (258)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999998764

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-44  Score=313.68  Aligned_cols=246  Identities=21%  Similarity=0.262  Sum_probs=210.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+|||+|.||+++|..|+++|++|++||++++ .+.+.+.|..  ..++. +. +.++|+||+|+|++.+.++++++ 
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~-~~~aDlVilavp~~~~~~~~~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDL-SL-LKDCDLVILALPIGLLLPPSEQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCH-hH-hcCCCEEEEcCCHHHHHHHHHHHH
Confidence            5899999999999999999999999999999985 4556666642  23344 33 48999999999999999999999 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      +.  ++++++++|++|+|..+.+.+.+..   .+|++.|||+|++..+      ..+.|.++++++....+++.++.+++
T Consensus        79 ~~--l~~~~ii~d~~Svk~~~~~~~~~~~---~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~  153 (279)
T PRK07417         79 PA--LPPEAIVTDVGSVKAPIVEAWEKLH---PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEE  153 (279)
T ss_pred             Hh--CCCCcEEEeCcchHHHHHHHHHHhh---CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHH
Confidence            77  7889999999999998877776543   3599999999998532      13678888898877667888999999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc-----ccc----CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE-----IQS----TSMNTKGFETLIRLKESSVNDSFDLFSGL  232 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~-----~~~----~~l~~~~~~~~~rl~~~~~~~~p~~~~~i  232 (275)
                      +++.+|++++++++++||++++++||+||+++.+|++..     .+.    ..++++||||+||++.++    |+||.+|
T Consensus       154 l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~~~----p~~w~~i  229 (279)
T PRK07417        154 LAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGGGN----PELGVMM  229 (279)
T ss_pred             HHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccCcccccccccCCC----hHHHHHH
Confidence            999999999999999999999999999999998887532     111    369999999999999887    9999999


Q ss_pred             HHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          233 YIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       233 ~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      +..|++++ +.|++|+++|+++++.|+++|.+.|++.
T Consensus       230 ~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~  266 (279)
T PRK07417        230 AEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQK  266 (279)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999986 9999999999999999999999887654

>PRK08507 prephenate dehydrogenase; Validated

Probab=100.00  E-value=2e-42  Score=301.19  Aligned_cols=247  Identities=22%  Similarity=0.290  Sum_probs=207.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCce-EecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGIS-FFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      |||+|||+|+||+++|..|.+.|+  +|++|||+++ .+.+.+.|+. ...+++++  .++|+||+|||++.+.+++.++
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aD~Vilavp~~~~~~~~~~l   78 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL--KKCDVIFLAIPVDAIIEILPKL   78 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH--hcCCEEEEeCcHHHHHHHHHHH
Confidence            589999999999999999999986  7999999985 4556667763 34566664  3599999999999999999988


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC------CccccceeeeeeecCChHHHHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN------GWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ..  ++++++|+|++|+|..+.+.+.+..  +.+|++.|||+|.+..+.      .+.|..+++++....+++.++++++
T Consensus        79 ~~--l~~~~iv~d~gs~k~~i~~~~~~~~--~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~  154 (275)
T PRK08507         79 LD--IKENTTIIDLGSTKAKIIESVPKHI--RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKE  154 (275)
T ss_pred             hc--cCCCCEEEECccchHHHHHHHHHhc--CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHH
Confidence            22  6788999999999998888776653  257999999988653321      2467778888765556778899999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc---ccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE---IQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYIH  235 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~---~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~  235 (275)
                      +|+.+|++++++++++||++++++||+||+++.+|++..   .+.   ..+.++||||++|++.++    |+||.+|+..
T Consensus       155 l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tria~~~----p~l~~~i~~~  230 (275)
T PRK08507        155 IFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRLAKSS----PAMWSDIFKQ  230 (275)
T ss_pred             HHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhcccCC----HHHHHHHHHH
Confidence            999999999999999999999999999999999888642   222   468999999999999876    9999999999


Q ss_pred             CHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          236 NRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       236 N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |++++ +.|++|++.|+++++.|+++|.+.|.+.
T Consensus       231 N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~  264 (275)
T PRK08507        231 NKENVLEAIDEFIKELEQFKQLIENEDWEELEEW  264 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99887 9999999999999999999998887653

>PRK06545 prephenate dehydrogenase; Validated

Probab=100.00  E-value=7.3e-43  Score=314.11  Aligned_cols=249  Identities=20%  Similarity=0.281  Sum_probs=211.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hH--HHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QL--CHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~--a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ++|+|||+|+||+++|.+|++.|++|.+|++++.. ..  +...|+  ...++++++ ++++|+||+|||++.+.+++.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRA-AAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHH-hcCCCEEEEeCCHHHHHHHHHH
Confidence            47999999999999999999999999999888742 22  223333  234566675 4899999999999999999999


Q ss_pred             C-C-CCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHH
Q 023897           87 L-P-VHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        87 l-~-~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                      + + .  ++++++++|++|+|..+.+.+++.++...+|+++|||+|++.++      ..+.|.++++++....+++.++.
T Consensus        80 l~~~~--l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~  157 (359)
T PRK06545         80 LADLE--LKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAE  157 (359)
T ss_pred             HhhcC--CCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHH
Confidence            9 5 4  67899999999999999888888766667899999999997542      34678889999876667888999


Q ss_pred             HHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc-ccc---cCcccCcchHHHHHHhhcCCCCChhhHHHHHH
Q 023897          159 FLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL-EIQ---STSMNTKGFETLIRLKESSVNDSFDLFSGLYI  234 (275)
Q Consensus       159 ~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~-~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~  234 (275)
                      ++++++.+|++++++++++||+++|++||+||+++.+|+.. +.+   ...|++++|||++||+.++    |+||.+|+.
T Consensus       158 v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~gfrd~tRia~~~----p~~w~di~~  233 (359)
T PRK06545        158 LKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAGGFRDITRIASSD----PGMWRDILE  233 (359)
T ss_pred             HHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcccccCCccccCCC----HHHHHHHHH
Confidence            99999999999999999999999999999999999998753 322   2468999999999999765    999999999


Q ss_pred             HCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          235 HNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       235 ~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +|+.++ +.|++|+++|+++++.|+++|.+.|++
T Consensus       234 ~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~  267 (359)
T PRK06545        234 SNAEALLDALDEWIEDLDRARDALESGDAEAIAE  267 (359)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999886 999999999999999999999876544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=100.00  E-value=2e-42  Score=305.70  Aligned_cols=253  Identities=18%  Similarity=0.299  Sum_probs=214.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      +..++|+|||+|.||++++..|.+.|+  +|++|||+++ .+.+.+.|+  ....+.+++ +.++|+||+|+|+....++
T Consensus         4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~~aDvViiavp~~~~~~v   82 (307)
T PRK07502          4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA-VKGADLVILCVPVGASGAV   82 (307)
T ss_pred             cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH-hcCCCEEEECCCHHHHHHH
Confidence            344799999999999999999999985  8999999985 455666665  344566665 4899999999999998899


Q ss_pred             hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHH
Q 023897           84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATC  156 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~  156 (275)
                      ++++ +.  ++++++++|++|+|..+.+.+.+.++.+.+|+++|||+|++..+      +.+.|..+++++..+.+++.+
T Consensus        83 ~~~l~~~--l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~  160 (307)
T PRK07502         83 AAEIAPH--LKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV  160 (307)
T ss_pred             HHHHHhh--CCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence            9888 76  78899999999999888888877776667899999999887532      234667777887665577788


Q ss_pred             HHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc--cc------cCcccCcchHHHHHHhhcCCCCChhh
Q 023897          157 SSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE--IQ------STSMNTKGFETLIRLKESSVNDSFDL  228 (275)
Q Consensus       157 ~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~--~~------~~~l~~~~~~~~~rl~~~~~~~~p~~  228 (275)
                      +.++++++.+|.+++++++++||+++|++||+||+++.+|+...  .+      ...++++||||++|++.++    |+|
T Consensus       161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~~~----~~~  236 (307)
T PRK07502        161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRIAASD----PTM  236 (307)
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhcccccccccccccCC----hHH
Confidence            99999999999999999999999999999999999999887532  11      1368999999999999887    999


Q ss_pred             HHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          229 FSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       229 ~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |.+|+..|++++ +.|++|++.|+++++.|+++|.++|.++
T Consensus       237 w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~  277 (307)
T PRK07502        237 WRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDL  277 (307)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999996 9999999999999999999998876553

>PRK08818 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-42  Score=307.74  Aligned_cols=235  Identities=18%  Similarity=0.250  Sum_probs=194.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHC-CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQ-GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+++|+|||+ |.||+++|++|++. |++|+++|++.+          ...++++. +.++|+||+|||+..+.++++++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~-v~~aDlVilavPv~~~~~~l~~l   71 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATL-LQRADVLIFSAPIRHTAALIEEY   71 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHH-hcCCCEEEEeCCHHHHHHHHHHH
Confidence            4689999999 99999999999975 889999998632          12355564 48999999999999999999998


Q ss_pred             -CCC-CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           88 -PVH-CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        88 -~~~-~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                       ++. .++++++|+|++|+|..+++.+.+.   ..+||++|||+|++.+ ..|+|.++++|+..  ..+..++++++++.
T Consensus        72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~~~---~~~fVG~HPMaG~E~s-~lf~g~~~iltp~~--~~~~~~~v~~l~~~  145 (370)
T PRK08818         72 VALAGGRAAGQLWLDVTSIKQAPVAAMLAS---QAEVVGLHPMTAPPKS-PTLKGRVMVVCEAR--LQHWSPWVQSLCSA  145 (370)
T ss_pred             hhhhcCCCCCeEEEECCCCcHHHHHHHHhc---CCCEEeeCCCCCCCCC-cccCCCeEEEeCCC--chhHHHHHHHHHHH
Confidence             531 1589999999999999888877543   4579999999999976 35889999998753  44557889999999


Q ss_pred             cCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc----c---c--c-CcccCcchH----HHHHHhhcCCCCChhhHHH
Q 023897          166 EGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE----I---Q--S-TSMNTKGFE----TLIRLKESSVNDSFDLFSG  231 (275)
Q Consensus       166 ~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~----~---~--~-~~l~~~~~~----~~~rl~~~~~~~~p~~~~~  231 (275)
                      +|++++++++++||+++|++|||||+...+++...    .   +  . ..+.+++||    +++|++.++    |+||.+
T Consensus       146 ~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAss~----P~mW~d  221 (370)
T PRK08818        146 LQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSASFELDTAVIARILSLN----PSIYED  221 (370)
T ss_pred             cCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccchhhHHHhhhcchhhcCC----HHHHHH
Confidence            99999999999999999999988887655444321    1   1  1 268999999    457999887    999999


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 023897          232 LYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQ  265 (275)
Q Consensus       232 i~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~  265 (275)
                      |+..|++..+.|++|+++|+++++.|+++|.+.+
T Consensus       222 I~~~N~~i~~~l~~~~~~L~~l~~~i~~~D~~~~  255 (370)
T PRK08818        222 IQFGNPYVGEMLDRLLAQLQELRALVAQGDDAAR  255 (370)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999994459999999999999999999998553

>PRK08655 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=5.7e-42  Score=314.60  Aligned_cols=248  Identities=24%  Similarity=0.380  Sum_probs=217.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+||| +|.||+++|..|.+.|++|++|+|+++.  ..+.+.|+...+++.++ +.++|+||+|+|++.+.+++.++ 
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~-~~~aDvVIlavp~~~~~~vl~~l~   79 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDA-AKDADIVIISVPINVTEDVIKEVA   79 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHH-hccCCEEEEecCHHHHHHHHHHHH
Confidence            6899998 8999999999999999999999999853  45667788777777775 48999999999999999999999 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG  167 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G  167 (275)
                      +.  ++++++++|++|+|..+.+.+.+.++.+.+|+++|||+||...  .+.|..+++++....+++.+++++++|+.+|
T Consensus        80 ~~--l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G  155 (437)
T PRK08655         80 PH--VKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEG  155 (437)
T ss_pred             hh--CCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence            77  8899999999999999999999888777899999999998753  5678888888766557788899999999999


Q ss_pred             CeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHHH----HHHhhcCCCCChhhHHHHHHHC
Q 023897          168 CKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFETL----IRLKESSVNDSFDLFSGLYIHN  236 (275)
Q Consensus       168 ~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~~----~rl~~~~~~~~p~~~~~i~~~N  236 (275)
                      ++++++++++||++++.+||+||+++.+++..    +.+.   ..+++++||++    +|++.++    |+||.+|+.+|
T Consensus       156 ~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~~~----p~lw~dI~~~N  231 (437)
T PRK08655        156 ARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILGQN----PYLYASIQMNN  231 (437)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhcCC----HHHHHHHHHhC
Confidence            99999999999999999999999998877753    4442   46999999998    7777655    99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          237 RFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       237 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |+..+.+++|+++|+++++.|+++|.+.|.+.
T Consensus       232 ~~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~  263 (437)
T PRK08655        232 PQIPEIHETFIKECEELSELVKNGDREEFVER  263 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            96669999999999999999999999987653

>PLN02712 arogenate dehydrogenase

Probab=100.00  E-value=1.4e-41  Score=324.87  Aligned_cols=259  Identities=53%  Similarity=0.897  Sum_probs=224.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      ..+|+|+|||+|+||+++|+.|.+.|++|++|||+.....+.+.|+....++++++..++|+||+|||+..+.+++.++ 
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~  129 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP  129 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence            4568999999999999999999999999999999875556777888777788874335699999999999999999988 


Q ss_pred             -CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecC----ChHHHHHHHHH
Q 023897           88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIR----DEATCSSFLRI  162 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l  162 (275)
                       +.  ++++++|+|++|+|..+.+.+.+.++.+..|+++|||+|++....++.+..+++++....    ..+.+++++++
T Consensus       130 ~~~--l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  207 (667)
T PLN02712        130 LQR--LKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEV  207 (667)
T ss_pred             hhc--CCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHH
Confidence             34  788999999999999999999998887788999999999996444566776766642211    12346778899


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHH
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQE  242 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~  242 (275)
                      |+.+|++++.+++++||+++|.+|||||+++.+|.....+..++.+++|+.+.+++.+..+++|+||++|+..|++..+.
T Consensus       208 ~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~L~~dI~~~N~~~~~~  287 (667)
T PLN02712        208 FEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNSLEM  287 (667)
T ss_pred             HHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHHHHHHHHHhCHHHHHH
Confidence            99999999999999999999999999999999999877656678899999999999999899999999999999966699


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHhhcC
Q 023897          243 LLDLEAAFEKVKHKLQQKMEEVQLEQS  269 (275)
Q Consensus       243 l~~~~~~l~~~~~~l~~~~~~~~~~~~  269 (275)
                      |++|+++|++++++|.+...+.+|+|.
T Consensus       288 l~~~~~~l~~~~~~l~~~~~~~~~~~~  314 (667)
T PLN02712        288 LERLDLAFEALRKQLFGRLHGVVRKQL  314 (667)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998874

>PLN02712 arogenate dehydrogenase

Probab=100.00  E-value=4.2e-41  Score=321.55  Aligned_cols=258  Identities=55%  Similarity=0.903  Sum_probs=220.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      ...|||+|||+|+||+++|++|++.|++|++|||+.....+.+.|+....++++++...+|+||+|||+..+.++++++ 
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~  446 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLP  446 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHH
Confidence            4668999999999999999999999999999999975455666788777788775323589999999999999999988 


Q ss_pred             C-CCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee----ecCChHHHHHHHHH
Q 023897           88 P-VHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV----RIRDEATCSSFLRI  162 (275)
Q Consensus        88 ~-~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l  162 (275)
                      . .  ++++++++|++|+|..+.+.+.+.++.+..|++.|||+|++.+..++.+.+.++.+.    +....+.++++.++
T Consensus       447 ~~~--lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l  524 (667)
T PLN02712        447 FQR--LKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDI  524 (667)
T ss_pred             Hhc--CCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHH
Confidence            4 4  788999999999999888999988887788999999999997533444444333321    11133455677899


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHH
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQE  242 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~  242 (275)
                      |+.+|++++.+++++||+++|.+||+||+++.+|.+.+.+..++++++|++++.|..+..+++|+||++|+..|+++.+.
T Consensus       525 ~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~gfr~l~~Li~Ria~~~p~l~~dI~~~N~~a~~~  604 (667)
T PLN02712        525 FAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVENTAGDSFDLYYGLFMYNVNAMEQ  604 (667)
T ss_pred             HHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccHHHHHHHHHHHhhcCCCHHHHHHHHHHChHHHHH
Confidence            99999999999999999999999999999999999988766778999999999888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          243 LLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       243 l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |++|...|+++++.|.+....++|+|
T Consensus       605 l~~f~~~l~~~~~~l~~~~~~~~~~~  630 (667)
T PLN02712        605 LERLDLAFESLKKQLFGRLHGVLRKQ  630 (667)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987776

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-40  Score=300.77  Aligned_cols=235  Identities=22%  Similarity=0.294  Sum_probs=201.1

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .+..++|+||| +|.||+++|..|+++|++|++||+++.            ++.+++ +.++|+||+|+|+..+.+++.+
T Consensus        95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~-~~~aDlVilavP~~~~~~~~~~  161 (374)
T PRK11199         95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDI-LADAGMVIVSVPIHLTEEVIAR  161 (374)
T ss_pred             CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHH-HhcCCEEEEeCcHHHHHHHHHH
Confidence            34668999999 999999999999999999999998742            234554 4799999999999999999999


Q ss_pred             CCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           87 LPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                      +..  ++++++++|++|+|..+.+.+.+.++  .+|++.|||+|++..  ++.+..+++++  +++++.++++.++++.+
T Consensus       162 l~~--l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~--~~~~~~vv~~~--~~~~~~~~~~~~l~~~l  233 (374)
T PRK11199        162 LPP--LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVG--SLAKQVVVVCD--GRQPEAYQWLLEQIQVW  233 (374)
T ss_pred             HhC--CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCc--ccCCCEEEEcC--CCCchHHHHHHHHHHHC
Confidence            832  68899999999999988888877654  369999999999864  45666566654  33567789999999999


Q ss_pred             CCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHH----HHHHhhcCCCCChhhHHHHHHH
Q 023897          167 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFET----LIRLKESSVNDSFDLFSGLYIH  235 (275)
Q Consensus       167 G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~----~~rl~~~~~~~~p~~~~~i~~~  235 (275)
                      |++++++++++||+++|++||+||+++.+++..    +.+.   ..+.+++|++    ++|++.++    |+||.+|+..
T Consensus       234 G~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~~~----p~lw~dI~~~  309 (374)
T PRK11199        234 GARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFAQD----PQLYADIIMS  309 (374)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHcCC----HHHHHHHHHh
Confidence            999999999999999999999999998877642    3331   3588999999    89999776    9999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          236 NRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       236 N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      |+++++.+++|++.|+++++.|+++|.+.|.+
T Consensus       310 N~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~  341 (374)
T PRK11199        310 SPENLALIKRYYQRFGEALELLEQGDKQAFID  341 (374)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999998765

>PRK06444 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-38  Score=259.78  Aligned_cols=194  Identities=22%  Similarity=0.374  Sum_probs=164.5

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCCC
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVH   90 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~~   90 (275)
                      |||+|||. |.||++++..|.+.|+.|+                         + .++|+||+|+|+..+.++++++.  
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~-~~~DlVilavPv~~~~~~i~~~~--   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------I-KKADHAFLSVPIDAALNYIESYD--   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------E-CCCCEEEEeCCHHHHHHHHHHhC--
Confidence            69999996 9999999999999999884                         1 57999999999999999998871  


Q ss_pred             CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeE
Q 023897           91 CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKM  170 (275)
Q Consensus        91 ~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v  170 (275)
                           .+++|++|+|.++.+.       ..+|+++||||||+.+..++. ..++++. +..+++..++++++|+  |+++
T Consensus        53 -----~~v~Dv~SvK~~i~~~-------~~~~vg~HPMfGp~~a~~~lf-~~~iv~~-~~~~~~~~~~~~~l~~--G~~~  116 (197)
T PRK06444         53 -----NNFVEISSVKWPFKKY-------SGKIVSIHPLFGPMSYNDGVH-RTVIFIN-DISRDNYLNEINEMFR--GYHF  116 (197)
T ss_pred             -----CeEEeccccCHHHHHh-------cCCEEecCCCCCCCcCccccc-ceEEEEC-CCCCHHHHHHHHHHHc--CCEE
Confidence                 2799999999975432       247999999999987643332 3444442 3346677889999998  8999


Q ss_pred             EEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHHHH
Q 023897          171 LEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAF  250 (275)
Q Consensus       171 ~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~~l  250 (275)
                      +.+++++||+++|++|||||+++.++.+.  . ..+++++||+++|+++...+++|+||.+|+.+||++ +.+++|.+.+
T Consensus       117 ~~~t~eeHD~~~A~ishLpH~ia~al~~~--~-~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-~~~~~~~~~~  192 (197)
T PRK06444        117 VEMTADEHDLLMSEIMVKPYIISMILKDI--K-SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-NVINDLIERL  192 (197)
T ss_pred             EEeCHHHHHHHHHHHHHHHHHHHHHHccC--C-CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-HHHHHHHHHH
Confidence            99999999999999999999999999884  2 478999999999999888888999999999999999 9999999987


Q ss_pred             HHH
Q 023897          251 EKV  253 (275)
Q Consensus       251 ~~~  253 (275)
                      +++
T Consensus       193 ~~~  195 (197)
T PRK06444        193 NKV  195 (197)
T ss_pred             hhc
Confidence            664

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=100.00  E-value=3.9e-36  Score=293.94  Aligned_cols=250  Identities=21%  Similarity=0.333  Sum_probs=212.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChh-hhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDH-SQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~-~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ..||+|||+|+||+++++.|.+.|  ++|++||++++ .+.+.+.|+.  ..++.+++ ++++|+||+|+|++.+.++++
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~~aDvVilavp~~~~~~vl~   81 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEA-VSGADVIVLAVPVLAMEKVLA   81 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHH-hcCCCEEEECCCHHHHHHHHH
Confidence            478999999999999999999998  48999999985 4556667763  34566665 489999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      ++ +.  ++++++++|++|+|..+.+.+++.++. ..+|++.|||+|++..+      +.+.+..+++++....+++..+
T Consensus        82 ~l~~~--~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~  159 (735)
T PRK14806         82 DLKPL--LSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA  159 (735)
T ss_pred             HHHHh--cCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence            99 76  788899999999999888888887653 46899999999998532      3456777888876555777889


Q ss_pred             HHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----ccc--cCcccCcchHHHHHHhhcCCCCChhhHHH
Q 023897          158 SFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ--STSMNTKGFETLIRLKESSVNDSFDLFSG  231 (275)
Q Consensus       158 ~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~--~~~l~~~~~~~~~rl~~~~~~~~p~~~~~  231 (275)
                      .++++|+.+|.+++++++++||+++|++||+||++++++++.    +..  ...+++++|+|++|++.++    |++|.+
T Consensus       160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~~f~~~tRia~~~----p~~~~d  235 (735)
T PRK14806        160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAGGFRDFTRIAASD----PVMWHD  235 (735)
T ss_pred             HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhccchhcccccccCC----HHHHHH
Confidence            999999999999999999999999999999999888777653    222  2478999999999999665    999999


Q ss_pred             HHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          232 LYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       232 i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      |+..|+.+. +.|++|+++|++++++++++|.+.|++
T Consensus       236 i~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~  272 (735)
T PRK14806        236 IFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLG  272 (735)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999886 999999999999999999999888665

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=100.00  E-value=7.3e-35  Score=281.06  Aligned_cols=191  Identities=20%  Similarity=0.257  Sum_probs=171.9

Q ss_pred             EEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC-CceeecCCCCCCCCCc------CCccccc
Q 023897           71 ILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-MDVLCTHPMFGPESGQ------NGWKDFA  142 (275)
Q Consensus        71 iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~-~~~v~~hP~~g~~~~~------~~~~g~~  142 (275)
                      ||+|+|+..+.+++.++ ++  ++++++|+|++|+|..+++.+.+.++.. .+||++|||+|++.++      +.|+|.+
T Consensus         1 vila~Pv~~~~~~~~~~~~~--~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAPVAQTGPLLARIAPF--LDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcCHHHHHHHHHHHhhh--CCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            69999999999999999 88  8999999999999999999988887643 5799999999999764      3588999


Q ss_pred             eeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc--c-c-c--CcccCcchHHHHH
Q 023897          143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE--I-Q-S--TSMNTKGFETLIR  216 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~--~-~-~--~~l~~~~~~~~~r  216 (275)
                      +++|+....+++.+++++++++.+|++++.+++++||+++|++|||||+++.+|++..  . + .  ..|+++||||+||
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~~a~~gfrd~tR  158 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFSYAAGGFRDFTR  158 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHHhcccchhcccc
Confidence            9999877667888999999999999999999999999999999999999999998742  1 1 1  3699999999999


Q ss_pred             HhhcCCCCChhhHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          217 LKESSVNDSFDLFSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       217 l~~~~~~~~p~~~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      ++.++    |+||.+|+.+|++++ +.|++|+++|+++++.|+++|.+.|.+
T Consensus       159 ia~~~----p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~  206 (673)
T PRK11861        159 IAASS----PEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEA  206 (673)
T ss_pred             cccCC----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99887    999999999999996 999999999999999999999887654

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-33  Score=238.07  Aligned_cols=261  Identities=46%  Similarity=0.741  Sum_probs=233.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVH   90 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~~   90 (275)
                      ..+|||||.|+||..+|..|.++||.|..++|++....+...|...++.+.+.+....|+|++||....+..++..++.+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfq  131 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQ  131 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCch
Confidence            35799999999999999999999999999999985566777888777777776567899999999999999999999444


Q ss_pred             CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCC----hHHHHHHHHHHHHc
Q 023897           91 CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRD----EATCSSFLRIFESE  166 (275)
Q Consensus        91 ~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~  166 (275)
                      +++.|++++|+.|+|....+.+.+++|++..++++|||+||......++|.|.++...+...    ++..+.+.++|...
T Consensus       132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~ce  211 (480)
T KOG2380|consen  132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACE  211 (480)
T ss_pred             hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999999999977778899999998776533    67889999999999


Q ss_pred             CCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHH
Q 023897          167 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDL  246 (275)
Q Consensus       167 G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~  246 (275)
                      |++.++++.++||++.|-+|.++|.....|..+.....+..++|++.++.|+.+.+++++++|++++..||++.+.|+++
T Consensus       212 gckmVemS~eeHDkiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsfhlyyGLfiyNpnAleqlery  291 (480)
T KOG2380|consen  212 GCKMVEMSYEEHDKIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSFHLYYGLFIYNPNALEQLERY  291 (480)
T ss_pred             CCeEEEEEeecccccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchhhheeeeeeeChhHHHHHHHH
Confidence            99999999999999999999999999888877665556677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHhhcCCC
Q 023897          247 EAAFEKVKHKLQQKMEEVQLEQSPN  271 (275)
Q Consensus       247 ~~~l~~~~~~l~~~~~~~~~~~~~~  271 (275)
                      .-+.+.++..+-.....++|.|+=+
T Consensus       292 d~afeelfkelfsrlhqeyrkq~f~  316 (480)
T KOG2380|consen  292 DTAFEELFKELFSRLHQEYRKQLFK  316 (480)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            9999999999998888888888643

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.94  E-value=1.9e-25  Score=193.51  Aligned_cols=243  Identities=12%  Similarity=0.131  Sum_probs=190.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChh-hhHHH-HcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDH-SQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~-~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      .+||+|||+|+||++|+..|.++|+    +|++|+|+++ .+.+. +.|+....+++++ +.++|+||+||||+.+.+++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~-~~~aDiIiLavkP~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEV-ANSADILILSIKPDLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHH-HhhCCEEEEEeChHHHHHHH
Confidence            3689999999999999999999884    6999999985 34333 4788777777775 48999999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      +++ +.  ++++++++|+..-  ...+.++++++...++++.+|+.+...+    .|...+ +.....+++..+.++++|
T Consensus        81 ~~l~~~--~~~~~lvISi~AG--i~i~~l~~~l~~~~~vvR~MPN~~~~vg----~g~t~~-~~~~~~~~~~~~~v~~lf  151 (272)
T PRK12491         81 NQIKDQ--IKNDVIVVTIAAG--KSIKSTENEFDRKLKVIRVMPNTPVLVG----EGMSAL-CFNEMVTEKDIKEVLNIF  151 (272)
T ss_pred             HHHHHh--hcCCcEEEEeCCC--CcHHHHHHhcCCCCcEEEECCChHHHHc----CceEEE-EeCCCCCHHHHHHHHHHH
Confidence            999 76  7788899887653  2357788888765689999998877765    454333 333344677789999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLY  233 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~  233 (275)
                      +.+|. ++++++++.|.+++++++.|.++++   +|.+    .|++.   ..++...|.+..++.... +.+|+.+.+-+
T Consensus       152 ~~~G~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~-~~~p~~l~~~V  229 (272)
T PRK12491        152 NIFGQ-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLET-GIHPGELKDMV  229 (272)
T ss_pred             HcCCC-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence            99995 5777899999999999999987654   4444    35553   468888999999998765 66777666655


Q ss_pred             H-HCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          234 I-HNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       234 ~-~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      . .+..+.+.|+.|++  ..+++.+.++..++.++
T Consensus       230 ~sPGGtT~~gl~~le~--~~~~~~~~~av~aa~~r  262 (272)
T PRK12491        230 CSPGGTTIEAVATLEE--KGLRTAIISAMKRCTQK  262 (272)
T ss_pred             CCCchHHHHHHHHHHH--CChHHHHHHHHHHHHHH
Confidence            4 56677899999998  68898888888877654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.93  E-value=1.5e-24  Score=184.79  Aligned_cols=241  Identities=18%  Similarity=0.221  Sum_probs=190.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCChh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTDH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      +|||+|||+|+||.+|+..|.++|    .+|++.+|+++ . ..+.++|+..+++.+++ +.++|+||+||+|+.+.+++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~-~~~advv~LavKPq~~~~vl   79 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEA-VEEADVVFLAVKPQDLEEVL   79 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHH-HhhCCEEEEEeChHhHHHHH
Confidence            479999999999999999999999    58999999985 3 36677787756676675 58899999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      .++ +   ..++++++++..-  ..++.++++++ +.++++.+|+.....+    +|...++ .....+++..+.+.++|
T Consensus        80 ~~l~~---~~~~~lvISiaAG--v~~~~l~~~l~-~~~vvR~MPNt~a~vg----~g~t~i~-~~~~~~~~~~~~v~~l~  148 (266)
T COG0345          80 SKLKP---LTKDKLVISIAAG--VSIETLERLLG-GLRVVRVMPNTPALVG----AGVTAIS-ANANVSEEDKAFVEALL  148 (266)
T ss_pred             HHhhc---ccCCCEEEEEeCC--CCHHHHHHHcC-CCceEEeCCChHHHHc----Ccceeee-cCccCCHHHHHHHHHHH
Confidence            999 5   4567777776532  23577888888 7899999998877754    4554443 33334778888999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhhc----cccc---CcccCcchHHHHHHhhcCCCCChhhHHHH-
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSEL----EIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL-  232 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~~----~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i-  232 (275)
                      +.+| ++++++++..|.+++++++.|.+++   .+|.+.    |++.   ..++.+.|....++.... +.+|..+++- 
T Consensus       149 ~~~G-~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~-~~~p~~Lr~~V  226 (266)
T COG0345         149 SAVG-KVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLES-GEHPAELRDQV  226 (266)
T ss_pred             HhcC-CeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence            9999 5677779999999999999998765   455553    5443   468899999999999987 6678555554 


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +..+..+.+.|..|++  +.++..+.+..+++.++
T Consensus       227 tSPGGtTiagl~~le~--~g~~~~v~~av~aa~~r  259 (266)
T COG0345         227 TSPGGTTIAGLRVLEE--DGFRGAVIEAVEAAYKR  259 (266)
T ss_pred             cCCCchHHHHHHHHHH--hChHHHHHHHHHHHHHH
Confidence            4456677899999997  58999999988888654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.93  E-value=3.9e-24  Score=185.34  Aligned_cols=239  Identities=14%  Similarity=0.155  Sum_probs=180.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC----eEEEE-cCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRAT-SRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~-dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      |||+|||+|+||++|++.|.++|+    +|++| +|+++ .+.+.+.|+....++.++ ++++|+||+|+|++.+.+++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~-~~~aDvVil~v~~~~~~~vl~   79 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEV-VKSSDVIILAVKPQVVKDVLT   79 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHH-HhcCCEEEEEECcHHHHHHHH
Confidence            789999999999999999999998    89998 99885 345566788888888885 489999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      .+ +.  +.++++++++ ++++.   +.+++.++.. ++++.+|+.+...+    .+ ...++.....+++..+.++++|
T Consensus        80 ~l~~~--~~~~~~iIs~~~g~~~---~~l~~~~~~~-~vvr~mP~~~~~~~----~~-~~~l~~~~~~~~~~~~~v~~l~  148 (266)
T PLN02688         80 ELRPL--LSKDKLLVSVAAGITL---ADLQEWAGGR-RVVRVMPNTPCLVG----EA-ASVMSLGPAATADDRDLVATLF  148 (266)
T ss_pred             HHHhh--cCCCCEEEEecCCCcH---HHHHHHcCCC-CEEEECCCcHHHHh----Cc-eEEEEeCCCCCHHHHHHHHHHH
Confidence            88 66  7778876655 55543   4555555433 67888887766543    22 2334433334678889999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH-HHH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF-SGL  232 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~-~~i  232 (275)
                      +.+|. ++++++++||.+++.+++.|.+++.   ++++    .|++.   ..+...++....++.... +.+|..+ ..+
T Consensus       149 ~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~-~~~~~~l~~~v  226 (266)
T PLN02688        149 GAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLET-GKHPGQLKDMV  226 (266)
T ss_pred             HhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence            99998 9999999999999999998876543   3333    46653   356777888888877654 6677776 555


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897          233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                      ...+..+.+.++.|.+  ..+++.+.++..+...
T Consensus       227 ~spgG~t~~~l~~l~~--~g~~~~~~~a~~~~~~  258 (266)
T PLN02688        227 TSPGGTTIAGVHELEK--GGFRAALMNAVVAAAK  258 (266)
T ss_pred             CCCchHHHHHHHHHHH--CChHHHHHHHHHHHHH
Confidence            5677777888988887  4777777777666643

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.93  E-value=5.1e-24  Score=184.71  Aligned_cols=241  Identities=14%  Similarity=0.143  Sum_probs=181.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC---CeEEEEcCChh-hhHHH-HcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDH-SQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~~~dr~~~-~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      +|+|+|||+|.||++++..|.+.|   ++|.+|+|+++ .+... ..|+....+.++. +.++|+||+|||++.+.++++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~-~~~advVil~v~~~~~~~v~~   80 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEA-AQEADVVVLAVKPQVMEEVLS   80 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHH-HhcCCEEEEEcCHHHHHHHHH
Confidence            579999999999999999999998   78999999985 33333 3477777777775 489999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      .+ +.  + +..++.++++++.   +.+++.++.+.++++.||+.+...+    .+. ..+++....+++..+.++++|+
T Consensus        81 ~l~~~--~-~~~vvs~~~gi~~---~~l~~~~~~~~~iv~~~P~~p~~~~----~~~-~~i~~~~~~~~~~~~~v~~l~~  149 (267)
T PRK11880         81 ELKGQ--L-DKLVVSIAAGVTL---ARLERLLGADLPVVRAMPNTPALVG----AGM-TALTANALVSAEDRELVENLLS  149 (267)
T ss_pred             HHHhh--c-CCEEEEecCCCCH---HHHHHhcCCCCcEEEecCCchHHHc----Cce-EEEecCCCCCHHHHHHHHHHHH
Confidence            99 65  5 3455566666653   4566777656788999997654432    232 3444443347888899999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH-HHHH
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF-SGLY  233 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~-~~i~  233 (275)
                      .+|..+++.++++||.++++++++|+++.   .++.+    .|++.   ..+..+.|++..++.... +.+|+.+ ..+.
T Consensus       150 ~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~  228 (267)
T PRK11880        150 AFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLES-GEHPAELRDNVT  228 (267)
T ss_pred             hCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhCC
Confidence            99986666669999999999999997663   23333    45543   457888999999999765 6678777 5555


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897          234 IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       234 ~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                      ..+..+.+.++.+.+  ..+++.+.+.......
T Consensus       229 tpgG~t~~gl~~l~~--~g~~~~~~~a~~~~~~  259 (267)
T PRK11880        229 SPGGTTIAALRVLEE--KGLRAAVIEAVQAAAK  259 (267)
T ss_pred             CCcHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
Confidence            667777788888877  4777777776666544

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.92  E-value=1.2e-23  Score=183.40  Aligned_cols=242  Identities=12%  Similarity=0.181  Sum_probs=182.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCCh-hh-h-HHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTD-HS-Q-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~-~~-~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ..|||+|||+|+||++|++.|.++|    ++|++|+|++ +. + .+.+.|+..+.++.++ ++++|+||+|||++.+.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~-~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKEL-LTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHH-HhcCCEEEEEeCHHHHHH
Confidence            4579999999999999999999998    7899999976 33 2 3344588777888775 489999999999999999


Q ss_pred             HhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           83 VLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        83 v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                      ++..+ +.  +.++++++++ ++++.   +.+++.++.+..+++.||+.....+    .+. .++++....+++..+.++
T Consensus        81 vl~~l~~~--~~~~~liIs~~aGi~~---~~l~~~~~~~~~v~r~mPn~~~~~~----~~~-t~~~~~~~~~~~~~~~v~  150 (279)
T PRK07679         81 ALIPFKEY--IHNNQLIISLLAGVST---HSIRNLLQKDVPIIRAMPNTSAAIL----KSA-TAISPSKHATAEHIQTAK  150 (279)
T ss_pred             HHHHHHhh--cCCCCEEEEECCCCCH---HHHHHHcCCCCeEEEECCCHHHHHh----ccc-EEEeeCCCCCHHHHHHHH
Confidence            99998 66  7788899996 66654   4555666655689999998665543    233 455444334577889999


Q ss_pred             HHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHH
Q 023897          161 RIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFS  230 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~  230 (275)
                      ++|+.+|. +++++++..|.+++.+++.|.+++.   ++.+    .|++.   ..+...++.+..++.... +.+|..+.
T Consensus       151 ~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~-~~~~~~l~  228 (279)
T PRK07679        151 ALFETIGL-VSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKAS-EKHPSILR  228 (279)
T ss_pred             HHHHhCCc-EEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHH
Confidence            99999996 5677888888889999999976543   4443    45553   457778888887887654 55688887


Q ss_pred             HHH-HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897          231 GLY-IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       231 ~i~-~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                      +-+ ..+......|+.|.+  ..+++.+.++.+++.+
T Consensus       229 ~~v~spgg~t~~gl~~l~~--~~~~~~i~~a~~~a~~  263 (279)
T PRK07679        229 KEITSPGGTTEAGIEVLQE--HRFQQALISCITQATQ  263 (279)
T ss_pred             HhcCCCchHHHHHHHHHHH--CChHHHHHHHHHHHHH
Confidence            776 556666788888876  4688888777776644

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.91  E-value=5.7e-23  Score=177.35  Aligned_cols=238  Identities=15%  Similarity=0.197  Sum_probs=177.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ..|||+|||+|+||++++..|.+++.    +|++++|++..     .+.....++.++ ++++|+||+|+|++.+.+++.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~~D~Vilavkp~~~~~vl~   75 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEEL-AKTCDIIVLAVKPDLAGKVLL   75 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHH-HHhCCEEEEEeCHHHHHHHHH
Confidence            45899999999999999999999872    59999987642     234455677775 478999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      ++ +.  ++++.+|+++++++..   .+++.++....+++.+|+.+...+    .+ .+++++....+++..+.++++|+
T Consensus        76 ~i~~~--l~~~~iIS~~aGi~~~---~l~~~~~~~~~vvr~mPn~p~~~g----~g-~t~i~~~~~~~~~~~~~v~~l~~  145 (260)
T PTZ00431         76 EIKPY--LGSKLLISICGGLNLK---TLEEMVGVEAKIVRVMPNTPSLVG----QG-SLVFCANNNVDSTDKKKVIDIFS  145 (260)
T ss_pred             HHHhh--ccCCEEEEEeCCccHH---HHHHHcCCCCeEEEECCCchhHhc----ce-eEEEEeCCCCCHHHHHHHHHHHH
Confidence            99 76  7777888999998754   455555543334444444333332    23 35555544446677899999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCCh-hhHHHHH
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSF-DLFSGLY  233 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p-~~~~~i~  233 (275)
                      .+|. ++.+++++.|.+++++++.|.+++.   ++.+    .|++.   ..++...+....++.... +.+| ++-..+.
T Consensus       146 ~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~-~~~~~~l~~~v~  223 (260)
T PTZ00431        146 ACGI-IQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKAS-DQPVQQLKDDVC  223 (260)
T ss_pred             hCCc-EEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhCC
Confidence            9995 5566888999999999999987654   4444    35553   468889999999998875 6677 4445555


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          234 IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       234 ~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      ..+..+.+.++.|++  ..+++.+.++..++.++
T Consensus       224 spgG~T~~gl~~le~--~g~~~~~~~a~~aa~~r  255 (260)
T PTZ00431        224 SPGGITIVGLYTLEK--HAFKYTVMDAVESACQK  255 (260)
T ss_pred             CCChHHHHHHHHHHH--CChHHHHHHHHHHHHHH
Confidence            577788899999987  58999998888877654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.89  E-value=3.8e-22  Score=173.65  Aligned_cols=238  Identities=13%  Similarity=0.173  Sum_probs=178.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCCh-hh-hH-HHHc-CceEecChHHHhccCCCEEEEecCchhHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTD-HS-QL-CHRS-GISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~-~~-~~-a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |+||+|||+|+||++++..|.++|    ++|++|+|++ .. .. .... +...+.+..++ +.++|+||+|+|++.+.+
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~-~~~aDvVilavpp~~~~~   79 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEI-FTKCDHSFICVPPLAVLP   79 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHH-HhhCCEEEEecCHHHHHH
Confidence            368999999999999999999998    6899999875 32 22 2223 34556677775 489999999999999999


Q ss_pred             HhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           83 VLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        83 v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ++.++ +.  +.++++++++..  +...+.+++.++. .++++.+|+.+...+    +|.. .++.....+++..+.+++
T Consensus        80 vl~~l~~~--l~~~~~ivS~~a--Gi~~~~l~~~~~~-~~vvR~MPN~~~~~g----~g~t-~~~~~~~~~~~~~~~v~~  149 (277)
T PRK06928         80 LLKDCAPV--LTPDRHVVSIAA--GVSLDDLLEITPG-LQVSRLIPSLTSAVG----VGTS-LVAHAETVNEANKSRLEE  149 (277)
T ss_pred             HHHHHHhh--cCCCCEEEEECC--CCCHHHHHHHcCC-CCEEEEeCccHHHHh----hhcE-EEecCCCCCHHHHHHHHH
Confidence            99999 76  777777776543  2334677787763 579999998877754    4543 334333446778899999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----c-cccc---CcccCcchHHHHHHhhcCCCCChhhHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----L-EIQS---TSMNTKGFETLIRLKESSVNDSFDLFS  230 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~-~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~  230 (275)
                      +|+.+| +++.+++++.|.+++++++.|.+++.   +|.+    . |++.   ..++...|.+..++.... +.+|..+.
T Consensus       150 l~~~~G-~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~-~~~p~~l~  227 (277)
T PRK06928        150 TLSHFS-HVMTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEE-DYTFSGTI  227 (277)
T ss_pred             HHHhCC-CEEEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHH
Confidence            999999 55677888999999999999987653   5554    3 4553   458889999999998765 66787776


Q ss_pred             HHHH-HCHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 023897          231 GLYI-HNRFAKQELLDLEAAFEKVKHKLQQKMEEV  264 (275)
Q Consensus       231 ~i~~-~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~  264 (275)
                      +-+. .+..+++.|+.|++   .+++.+.+..+++
T Consensus       228 ~~v~spgGtT~~gl~~le~---~~~~~~~~~~~~a  259 (277)
T PRK06928        228 ERVATKGGITAEGAEVIQA---QLPQFFDELLDRT  259 (277)
T ss_pred             HhCCCCChHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            6654 55677888888885   6777777766665

>PRK07680 late competence protein ComER; Validated

Probab=99.87  E-value=1.4e-20  Score=163.61  Aligned_cols=239  Identities=16%  Similarity=0.204  Sum_probs=172.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChhh-h-HHHHc-CceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDHS-Q-LCHRS-GISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~~-~-~a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      |+|+|||+|+||++++..|.+.|+    +|.+|+|+++. . ...+. |+....+++++ +.++|+||+|||++.+.+++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDiVilav~p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEV-ISQSDLIFICVKPLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHH-HHhCCEEEEecCHHHHHHHH
Confidence            589999999999999999999983    79999999853 2 22333 67777788775 48999999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      +++ +.  +.++++++++++..  ..+.+++.++  ...++.+|.....    ...|...+..+ ...+++..+.++++|
T Consensus        80 ~~l~~~--l~~~~~iis~~ag~--~~~~L~~~~~--~~~~r~~p~~~~~----~~~G~t~~~~g-~~~~~~~~~~~~~ll  148 (273)
T PRK07680         80 QKLAPH--LTDEHCLVSITSPI--SVEQLETLVP--CQVARIIPSITNR----ALSGASLFTFG-SRCSEEDQQKLERLF  148 (273)
T ss_pred             HHHHhh--cCCCCEEEEECCCC--CHHHHHHHcC--CCEEEECCChHHH----HhhccEEEeeC-CCCCHHHHHHHHHHH
Confidence            999 77  77888998887632  2466777765  2456667742211    11454333332 223566778999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh-----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE-----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL  232 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~-----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i  232 (275)
                      +.+| .+++++++..|..+++.++.|.+++.   +|.+     .|++.   ..+..+.+.+..++.... +.+|+.+.+-
T Consensus       149 ~~~G-~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~-~~~~~~l~~~  226 (273)
T PRK07680        149 SNIS-TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKG-LYTLPTLQEK  226 (273)
T ss_pred             HcCC-CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHh
Confidence            9999 56677877788888888888866543   3332     45553   457788899998988765 5566555554


Q ss_pred             H-HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          233 Y-IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       233 ~-~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      + ..+..+.+.++.+++   .+++.+.+..+.+.++
T Consensus       227 v~spgG~T~~gl~~le~---~~~~~~~~~~~~~~~~  259 (273)
T PRK07680        227 VCVKGGITGEGIKVLEE---EVGDMFHRLFQRTHEK  259 (273)
T ss_pred             CCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            4 466677888888877   4888888877776544

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.86  E-value=4e-21  Score=166.74  Aligned_cols=209  Identities=21%  Similarity=0.338  Sum_probs=160.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHH--------------cCceEecChHHHhccCCCEEEEec
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHR--------------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~--------------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ++||+|||+|.||++||..|+++||+|.+|.|+++.. .-.+              .++..++|+.++ ++++|+|+++|
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a-~~~ad~iv~av   79 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEA-LDGADIIVIAV   79 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHH-HhcCCEEEEEC
Confidence            4799999999999999999999999999999998532 1111              123567889986 58899999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCC-----CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVL-----SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~-----s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      |.+.++++++++ ++  +.++.+++.++     .....+.+.+++.++...  +.  -++||+++.|..++.|+.++-. 
T Consensus        80 Ps~~~r~v~~~l~~~--l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~--vLSGPs~A~EVa~g~pta~~va-  152 (329)
T COG0240          80 PSQALREVLRQLKPL--LLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IA--VLSGPSFAKEVAQGLPTAVVVA-  152 (329)
T ss_pred             ChHHHHHHHHHHhhh--ccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EE--EEECccHHHHHhcCCCcEEEEe-
Confidence            999999999999 77  88888888654     122234566677666332  11  2468888777888988877643 


Q ss_pred             cCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-ccc--cc-CcccCcchHHHHHHhhcCC
Q 023897          150 IRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEI--QS-TSMNTKGFETLIRLKESSV  222 (275)
Q Consensus       150 ~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~--~~-~~l~~~~~~~~~rl~~~~~  222 (275)
                      +.|.+..+.++++|..-.+++|..+    |.+...+ +.+++++|.+..  + +++  +. ..+.++||.+|+|++... 
T Consensus       153 s~d~~~a~~v~~~f~~~~Frvy~~~----Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l-  227 (329)
T COG0240         153 SNDQEAAEKVQALFSSPYFRVYTST----DVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL-  227 (329)
T ss_pred             cCCHHHHHHHHHHhCCCcEEEEecC----chhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh-
Confidence            4578889999999999999999987    8777755 699999886554  3 333  22 468999999999999987 


Q ss_pred             CCChhhHHHH
Q 023897          223 NDSFDLFSGL  232 (275)
Q Consensus       223 ~~~p~~~~~i  232 (275)
                      +..|+++..+
T Consensus       228 G~~~~T~~gL  237 (329)
T COG0240         228 GAKPETFMGL  237 (329)
T ss_pred             CCCcchhccc
Confidence            7779877655

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.86  E-value=2.3e-20  Score=159.82  Aligned_cols=223  Identities=18%  Similarity=0.184  Sum_probs=162.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCC-hh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRT-DH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~-~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      |+.+||+|||+|+||.+++..|.+.|+    +|++++|+ ++ . ..+.+.++..+.+++++ ++++|+||+|||++.+.
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DiViiavp~~~~~   80 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQH-VTSVDTIVLAMPPSAHE   80 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHH-HhcCCEEEEecCHHHHH
Confidence            456899999999999999999998863    37788875 43 2 23444677777788886 48999999999999999


Q ss_pred             HHhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      ++++++ +.  ++ +++++++ ++++   .+.+++.++.+..++..||+++.+.+    .+.+.+.+... .+++..+.+
T Consensus        81 ~v~~~l~~~--~~-~~~vis~~~gi~---~~~l~~~~~~~~~v~r~~Pn~a~~v~----~g~~~~~~~~~-~~~~~~~~v  149 (245)
T PRK07634         81 ELLAELSPL--LS-NQLVVTVAAGIG---PSYLEERLPKGTPVAWIMPNTAAEIG----KSISLYTMGQS-VNETHKETL  149 (245)
T ss_pred             HHHHHHHhh--cc-CCEEEEECCCCC---HHHHHHHcCCCCeEEEECCcHHHHHh----cCCeEEeeCCC-CCHHHHHHH
Confidence            999999 65  55 4455544 4444   35677777766678889998777654    56666655433 477888999


Q ss_pred             HHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH
Q 023897          160 LRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF  229 (275)
Q Consensus       160 ~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~  229 (275)
                      +++|+.+|..++ +++++.|.+++++++.|.++..   ++.+    .|++.   .++..+.+++..++...  +.+|+.+
T Consensus       150 ~~lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~--~~~~~~l  226 (245)
T PRK07634        150 QLILKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ--TQDPANL  226 (245)
T ss_pred             HHHHHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC--CCCHHHH
Confidence            999999997764 6888899999999999976543   3433    45553   45778888888888864  4567665


Q ss_pred             HHHHH-HCHHHHHHHHHH
Q 023897          230 SGLYI-HNRFAKQELLDL  246 (275)
Q Consensus       230 ~~i~~-~N~~~~~~l~~~  246 (275)
                      .+-+. .+..+++.++.+
T Consensus       227 ~~~v~spgG~T~~gl~~l  244 (245)
T PRK07634        227 REQVTTPGGSTAEGLKAL  244 (245)
T ss_pred             HHhCCCCChHHHHHHHHh
Confidence            55443 555666666554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.85  E-value=2.2e-19  Score=154.52  Aligned_cols=169  Identities=19%  Similarity=0.260  Sum_probs=139.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh---
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN---   85 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~---   85 (275)
                      +||+|||+|.||..||.+|.++||+|++|||+++  .+.+...|.....++.++ +..+|+||+|+|.+ .+++|+.   
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~ea-a~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEA-AAEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHH-HHhCCEEEEecCCHHHHHHHHhCcc
Confidence            5899999999999999999999999999999985  356667799988899886 58999999999986 4678885   


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      .+ ..  +++|++++|++|+.....+.+.+.+. .+..|+. -|+.|...+.  ..|..+++++.   +++.+++++++|
T Consensus        80 g~~~~--~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A--~~GtLtimvGG---~~~~f~r~~pvl  151 (286)
T COG2084          80 GLLEG--LKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGA--AAGTLTIMVGG---DAEAFERAKPVL  151 (286)
T ss_pred             chhhc--CCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhh--hhCceEEEeCC---CHHHHHHHHHHH
Confidence            34 44  78999999999988877777766553 4567876 5888887542  36777888754   788999999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +.+|.+++++.+.-....+.+++++-
T Consensus       152 ~~~g~~i~~~G~~G~G~~~Kl~nn~l  177 (286)
T COG2084         152 EAMGKNIVHVGPVGAGQAAKLANNIL  177 (286)
T ss_pred             HHhcCceEEECCCCchHHHHHHHHHH
Confidence            99999999999887777888776444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.84  E-value=4.1e-21  Score=154.47  Aligned_cols=152  Identities=18%  Similarity=0.279  Sum_probs=117.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHhhc--
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVLNS--   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~~~--   86 (275)
                      |+||||||+|.||+.||+.|.++||+|++|||+++ .+...+.|+....++.++ ++++|+||+|+|. +++.+++..  
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~-~~~~dvvi~~v~~~~~v~~v~~~~~   79 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEA-AEQADVVILCVPDDDAVEAVLFGEN   79 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHH-HHHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhH-hhcccceEeecccchhhhhhhhhhH
Confidence            58999999999999999999999999999999985 466677799999999996 5899999999998 567899988  


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  +++|++++|++++.....+.+.+.+ ..+.+|+. -|++|....  ...|...++..+   +++.+++++.+|+
T Consensus        80 i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd-apV~Gg~~~--a~~g~l~~~~gG---~~~~~~~~~~~l~  151 (163)
T PF03446_consen   80 ILAG--LRPGKIIIDMSTISPETSRELAERLAAKGVRYVD-APVSGGPPG--AEEGTLTIMVGG---DEEAFERVRPLLE  151 (163)
T ss_dssp             HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE-EEEESHHHH--HHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred             Hhhc--cccceEEEecCCcchhhhhhhhhhhhhccceeee-eeeeccccc--ccccceEEEccC---CHHHHHHHHHHHH
Confidence            6 76  8999999999998877777776665 35678887 477776532  124554666543   6788999999999


Q ss_pred             HcCCeEE
Q 023897          165 SEGCKML  171 (275)
Q Consensus       165 ~~G~~v~  171 (275)
                      .+|.+++
T Consensus       152 ~~~~~v~  158 (163)
T PF03446_consen  152 AMGKNVY  158 (163)
T ss_dssp             HHEEEEE
T ss_pred             HHhCCce
Confidence            9999888

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.84  E-value=2.2e-19  Score=157.31  Aligned_cols=169  Identities=20%  Similarity=0.230  Sum_probs=134.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc---C
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS---L   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~---l   87 (275)
                      |||+|||+|+||.+|++.|.+.|++|++|||++..+...+.|.....++.++ ++++|+||+|+|.+ .+.+++..   +
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~-~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQV-TEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            5899999999999999999999999999999875444456788777788885 58999999999987 56777643   3


Q ss_pred             -CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                       +.  +.+|++++|++++.....+.+.+.+ ..+..|+. +|++|...+.  ..|...+++.+   +++.+++++++|+.
T Consensus        80 ~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a--~~g~l~~~~gG---~~~~~~~~~p~l~~  151 (292)
T PRK15059         80 TKA--SLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGA--REGTLSIMVGG---DEAVFERVKPLFEL  151 (292)
T ss_pred             hcc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHH--hcCcEEEEEcC---CHHHHHHHHHHHHH
Confidence             44  6789999999999887666665554 34678888 6999877532  25665666532   67889999999999


Q ss_pred             cCCeEEEcChhHHHHHHHHhhhhH
Q 023897          166 EGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       166 ~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +|.+++++++..+...+.+++++-
T Consensus       152 ~g~~~~~~G~~G~g~~~Kl~~N~l  175 (292)
T PRK15059        152 LGKNITLVGGNGDGQTCKVANQII  175 (292)
T ss_pred             HcCCcEEeCCccHHHHHHHHHHHH
Confidence            999999999888888888775443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.84  E-value=1.8e-19  Score=155.56  Aligned_cols=235  Identities=20%  Similarity=0.229  Sum_probs=169.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC---eEEEEcCChhh-h-HHHHc-CceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH---ILRATSRTDHS-Q-LCHRS-GISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~---~V~~~dr~~~~-~-~a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      |||+|||+|+||+++++.|.+.|+   .+.+|+|+++. + .+... ++..+.+++++ ++++|+||+|+|++.+.+++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~aDvVilav~p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAV-VDRSDVVFLAVRPQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHH-HHhCCEEEEEeCHHHHHHHHH
Confidence            589999999999999999999885   35789998853 3 33334 46777788885 488999999999999999998


Q ss_pred             cCCCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           86 SLPVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      .+.   +.++++++++. +++   .+.+++.++.+.+.+..||+......    .+. ..+++    +   .+.++++|+
T Consensus        80 ~l~---~~~~~~vis~~ag~~---~~~l~~~~~~~~~~~r~~P~~~~a~~----~g~-t~~~~----~---~~~~~~l~~  141 (258)
T PRK06476         80 ALR---FRPGQTVISVIAATD---RAALLEWIGHDVKLVRAIPLPFVAER----KGV-TAIYP----P---DPFVAALFD  141 (258)
T ss_pred             Hhc---cCCCCEEEEECCCCC---HHHHHHHhCCCCCEEEECCCChhhhC----CCC-eEecC----C---HHHHHHHHH
Confidence            873   45666666544 444   35566666555677888888554432    232 33332    1   257899999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhhHHHHHHHH-------hhccccc---CcccCcchHHHHHHh-hcCCCCChhhHHHH-
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVL-------SELEIQS---TSMNTKGFETLIRLK-ESSVNDSFDLFSGL-  232 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l-------~~~~~~~---~~l~~~~~~~~~rl~-~~~~~~~p~~~~~i-  232 (275)
                      .+|..+++.+++++|.+++..+ +|..+...+       .+.|++.   ..+..+.+....+++ ... +.+|+.+.+- 
T Consensus       142 ~lG~~~~~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~-~~~~~~l~~~v  219 (258)
T PRK06476        142 ALGTAVECDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRST-KTDFSALSREF  219 (258)
T ss_pred             hcCCcEEECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHhC
Confidence            9998888778999999999875 453332222       2346653   457888999999994 443 5666666555 


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcC
Q 023897          233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQS  269 (275)
Q Consensus       233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~  269 (275)
                      ...+..+.+.|+.|++  ..+++.+.++.+++.++-+
T Consensus       220 ~spgGtT~~gl~~le~--~~~~~~~~~a~~aa~~r~~  254 (258)
T PRK06476        220 STKGGLNEQVLNDFSR--QGGYAALTDALDRVLRRIN  254 (258)
T ss_pred             CCCCchHHHHHHHHHH--CChHHHHHHHHHHHHHHhh
Confidence            5577788899999987  5899999999988876644

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.81  E-value=2.6e-18  Score=150.81  Aligned_cols=169  Identities=18%  Similarity=0.237  Sum_probs=128.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---hcC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---NSL   87 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~~l   87 (275)
                      ||+|||+|.||.++|..|.+.|++|++|||+++ .+...+.|....++..++ ++++|+||+|+|.. .+..++   ..+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQV-TEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHH-HhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            599999999999999999999999999999985 455566777767788775 48999999999986 455565   224


Q ss_pred             -CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                       +.  ++++++++|++++.....+.+.+.+. .+..|+. +|++|.+..  ...+...++.++   +++.++.++++++.
T Consensus        80 ~~~--~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~~ll~~  151 (291)
T TIGR01505        80 IEG--AKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIG--AIEGTLSIMVGG---DQAVFDRVKPLFEA  151 (291)
T ss_pred             hhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHH--HhcCCEEEEecC---CHHHHHHHHHHHHH
Confidence             44  67899999998887755555655543 3567887 799887532  224544555542   67888999999999


Q ss_pred             cCCeEEEcChhHHHHHHHHhhhhHH
Q 023897          166 EGCKMLEMSCEEHDKVAAKSQFLTH  190 (275)
Q Consensus       166 ~G~~v~~~~~~~hD~~~a~~~~lp~  190 (275)
                      +|.+++++++..+...+.+++++-.
T Consensus       152 lg~~~~~~g~~g~a~~~Kl~~n~~~  176 (291)
T TIGR01505       152 LGKNIVLVGGNGDGQTCKVANQIIV  176 (291)
T ss_pred             hcCCeEEeCCCCHHHHHHHHHHHHH
Confidence            9999999987777766676664443

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=5.4e-18  Score=148.46  Aligned_cols=179  Identities=12%  Similarity=0.038  Sum_probs=132.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-------------------------cCceEecChHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-------------------------SGISFFSDKRAFL   64 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-------------------------~g~~~~~~~~~~~   64 (275)
                      .+||+|||+|.||+++|..|+.+|++|++||++++ .+.+.+                         .+++.+++.+++ 
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a-   81 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA-   81 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH-
Confidence            46899999999999999999999999999999974 222110                         133567788875 


Q ss_pred             ccCCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      ++++|+||.|+|.+  ...++++++ +.  +++++++++.+|++..  ..+.+.++...+|++.||..++.      ...
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~ii~sntSt~~~--~~~~~~~~~~~r~vg~Hf~~p~~------~~~  151 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKV--APEKTIFATNSSTLLP--SQFAEATGRPEKFLALHFANEIW------KNN  151 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhh--CCCCCEEEECcccCCH--HHHHhhcCCcccEEEEcCCCCCC------cCC
Confidence            48999999999976  567888888 76  7888999877776642  34555555556899999955543      233


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE  200 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~  200 (275)
                      .+.+++...++++.++.+.++++.+|.+++.+.++.|+.+...+.+.--.-+..+.+.|
T Consensus       152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g  210 (287)
T PRK08293        152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKG  210 (287)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence            45556556678899999999999999999999889999887766533222333444444

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.80  E-value=3.5e-18  Score=149.73  Aligned_cols=165  Identities=13%  Similarity=0.160  Sum_probs=133.0

Q ss_pred             EEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHh---hcC-CC
Q 023897           16 IIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVL---NSL-PV   89 (275)
Q Consensus        16 IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~---~~l-~~   89 (275)
                      |||+|.||.+||+.|.++|++|++|||+++ .+...+.|+..+.++.++ ++++|+||+|+|+ ..+.+++   +.+ +.
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~-~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEA-AEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            689999999999999999999999999985 455566788777888886 5899999999998 5568887   566 55


Q ss_pred             CCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCC
Q 023897           90 HCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGC  168 (275)
Q Consensus        90 ~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~  168 (275)
                        ++++++++|++++.....+.+.+.+. .+..|+.. |++|...+.  ..|...+++.+   +++.+++++++|+.+|.
T Consensus        80 --~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a--~~g~l~~~~gg---~~~~~~~~~~~l~~~g~  151 (288)
T TIGR01692        80 --VAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGA--RAGTLTFMVGG---VAEEFAAAEPVLGPMGR  151 (288)
T ss_pred             --CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHH--hhCcEEEEECC---CHHHHHHHHHHHHHhcC
Confidence              78899999999998877777766553 46788885 998877532  24555666643   57788999999999999


Q ss_pred             eEEEcChhHHHHHHHHhhhhH
Q 023897          169 KMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       169 ~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +++++++......+.++.++.
T Consensus       152 ~~~~~g~~g~g~~~Kl~~n~~  172 (288)
T TIGR01692       152 NIVHCGDHGAGQAAKICNNML  172 (288)
T ss_pred             CeEeeCCCCHHHHHHHHHHHH
Confidence            999998888888888877654

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.80  E-value=3.6e-18  Score=150.40  Aligned_cols=205  Identities=14%  Similarity=0.077  Sum_probs=149.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ..++|+|||+|+||.++|+.|.+.|++|+++++..  ....+.+.|+... ++.++ ++++|+|++++|++ ....+.++
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea-~~~ADiVvLaVpp~~~~~~v~~e   79 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEA-IPQADLIMNLLPDEVQHEVYEAE   79 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHH-HhcCCEEEEeCCcHhHHHHHHHH
Confidence            45789999999999999999999999887765543  2344556788754 57775 48999999999999 66666777


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC-c--CCccccceeeeeeecCChHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG-Q--NGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~-~--~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                      + +.  ++++.+|.-..++.   +..++..++.+..++..+|+.+...- .  ..-.|.+.++......+++..+.+..+
T Consensus        80 i~~~--l~~g~iVs~aaG~~---i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~  154 (314)
T TIGR00465        80 IQPL--LKEGKTLGFSHGFN---IHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY  154 (314)
T ss_pred             HHhh--CCCCcEEEEeCCcc---HhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence            8 76  77777665555543   35566667767789999998877631 0  001566666533322367788999999


Q ss_pred             HHHcCCe-------EE--EcChhHHHHHHHHhhhhHHHHH---HHHhhccccc---CcccCcchHHHHHHhhcC
Q 023897          163 FESEGCK-------ML--EMSCEEHDKVAAKSQFLTHTIG---RVLSELEIQS---TSMNTKGFETLIRLKESS  221 (275)
Q Consensus       163 ~~~~G~~-------v~--~~~~~~hD~~~a~~~~lp~~~a---~~l~~~~~~~---~~l~~~~~~~~~rl~~~~  221 (275)
                      ++.+|..       .+  .++++..|..+++++++|.++.   .+|++.|+++   ..++...+....++....
T Consensus       155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~~~l~~e~  228 (314)
T TIGR00465       155 AKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLIVDLIYEG  228 (314)
T ss_pred             HHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999976       32  5667788989999999998654   4777788874   346677777777777654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.79  E-value=1.6e-17  Score=145.98  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=127.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc---
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS---   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~---   86 (275)
                      +||+|||+|+||++||..|.++|++|++|||+++ .+...+.|+....++.++ ++++|+||+|+|++. +.+++..   
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~-~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQA-AAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHH-HhcCCEEEEecCCHHHHHHHHcCccc
Confidence            5899999999999999999999999999999985 455556677777788875 589999999999984 6777653   


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++|++++.....+.+.+.+ ..+..|+. -|+.|....  ...|...++.+.   +++.+++++.+|+
T Consensus        81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld-apV~g~~~~--a~~g~l~~~~gg---~~~~~~~~~p~l~  152 (296)
T PRK15461         81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD-VPVGRTSDN--AITGTLLLLAGG---TAEQVERATPILM  152 (296)
T ss_pred             Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-ccCCCCHHH--HHhCcEEEEECC---CHHHHHHHHHHHH
Confidence            3 44  6789999999998876666665554 34577876 587776432  225665666542   6788999999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhh
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~  186 (275)
                      .+|.+++++++......+.++.
T Consensus       153 ~~g~~~~~~g~~G~g~~~Kl~~  174 (296)
T PRK15461        153 AMGNELINAGGPGMGIRVKLIN  174 (296)
T ss_pred             HHcCCeEeeCCCCHHHHHHHHH
Confidence            9999999988765555555554

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=141.55  Aligned_cols=177  Identities=16%  Similarity=0.210  Sum_probs=138.9

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHH
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEV   83 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v   83 (275)
                      -..+..++||+||+|.||..|+..|.++||.|++|||+.. ++...+.|.++..++.|+ ++++|+||.+||... +.++
T Consensus        30 ~~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeV-ae~sDvvitmv~~~~~v~~v  108 (327)
T KOG0409|consen   30 RITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEV-AEDSDVVITMVPNPKDVKDV  108 (327)
T ss_pred             cCCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHH-HhhcCEEEEEcCChHhhHHH
Confidence            3455678999999999999999999999999999999984 677888899999999996 699999999999864 5566


Q ss_pred             hhcC-C-CCCCCCCcEE-EeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           84 LNSL-P-VHCLQRRTLI-ADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        84 ~~~l-~-~~~l~~~~iv-~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      +..- . ...++++... +|.+++++....++.+.. ..+.+|+. -|+.|...+.  .+|..+++..   .|++.+++.
T Consensus       109 ~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD-APVSGg~~~A--~~G~Ltimag---Gde~~~~~~  182 (327)
T KOG0409|consen  109 LLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD-APVSGGVKGA--EEGTLTIMAG---GDEALFEAA  182 (327)
T ss_pred             hcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe-ccccCCchhh--hcCeEEEEec---CcHHHHHHH
Confidence            5543 1 1114566655 899999988877776654 34577887 5888877543  3677777764   378899999


Q ss_pred             HHHHHHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          160 LRIFESEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       160 ~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      ..+|+.+|.+++++..-.....+.++.++.
T Consensus       183 ~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~  212 (327)
T KOG0409|consen  183 SPVFKLMGKNVVFLGGVGNGQAAKLCNNML  212 (327)
T ss_pred             HHHHHHhcceEEEecccCchHHHHHHHHHH
Confidence            999999999999998776666666665544

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.78  E-value=1.5e-17  Score=146.37  Aligned_cols=168  Identities=13%  Similarity=0.148  Sum_probs=129.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccC---CCEEEEecCch-hHHHHhhc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEAD---NDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~---aD~iilavp~~-~~~~v~~~   86 (275)
                      |+|||||+|+||..+|..|.+.|++|++|||+++ .+...+.|.....+++++ +++   +|+||+|+|++ .+.++++.
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~-~~~~~~advVi~~vp~~~~~~~v~~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEEL-VSKLEAPRTIWVMVPAGEVTESVIKD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHH-HHhCCCCCEEEEEecCchHHHHHHHH
Confidence            5899999999999999999999999999999985 455566788888888885 354   69999999998 78899888


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++|++++.......+.+.+ ..+..|+. .|++|...+.  ..|. .++..+   +++.+++++++|+
T Consensus        80 i~~~--l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd-apV~G~~~~a--~~g~-~~~~gG---~~~~~~~~~~~l~  150 (299)
T PRK12490         80 LYPL--LSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD-CGTSGGVWGL--RNGY-CLMVGG---DKEIYDRLEPVFK  150 (299)
T ss_pred             Hhcc--CCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe-CCCCCCHHHH--hcCC-eEEecC---CHHHHHHHHHHHH
Confidence            8 76  7889999999888765555554444 34677876 5888775432  2455 455432   6788999999999


Q ss_pred             HcCC---eEEEcChhHHHHHHHHhhhhH
Q 023897          165 SEGC---KMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       165 ~~G~---~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      .+|.   +++++.+......+.++.++.
T Consensus       151 ~~~~~~~~~~~~G~~g~a~~~Kl~~n~~  178 (299)
T PRK12490        151 ALAPEGPGYVHAGPVGSGHFLKMVHNGI  178 (299)
T ss_pred             HhcCcCCcEEEECCcCHHHHHHHHHHHH
Confidence            9997   678887766666666665433

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.78  E-value=4.9e-18  Score=152.09  Aligned_cols=211  Identities=15%  Similarity=0.164  Sum_probs=154.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-------CeEEEEcCChhh------hHHHH--------------cCceEecChH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-------HILRATSRTDHS------QLCHR--------------SGISFFSDKR   61 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-------~~V~~~dr~~~~------~~a~~--------------~g~~~~~~~~   61 (275)
                      -..+||+|||+|.||+++|..|.++|       ++|.+|.|+++.      +.-.+              .++..+++++
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            45689999999999999999999997       799999998741      11111              1235677888


Q ss_pred             HHhccCCCEEEEecCchhHHHHhhcC-C--CCCCCCCcEEEeCC-CCC------hhHHHHHHhhCCCCCceeecCCCCCC
Q 023897           62 AFLEADNDVILISTSILSLSEVLNSL-P--VHCLQRRTLIADVL-SVK------EYPRNVLLQVLPEEMDVLCTHPMFGP  131 (275)
Q Consensus        62 ~~~~~~aD~iilavp~~~~~~v~~~l-~--~~~l~~~~iv~d~~-s~k------~~~~~~l~~~l~~~~~~v~~hP~~g~  131 (275)
                      ++ ++++|+||++||++.++++++++ +  .  ++++.+++.++ ++.      ..+.+.+++.++.  .+   --+.||
T Consensus        89 ea-v~~aDiIvlAVPsq~l~~vl~~l~~~~~--l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~---~~LsGP  160 (365)
T PTZ00345         89 EA-VEDADLLIFVIPHQFLESVLSQIKENNN--LKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PC---CALSGA  160 (365)
T ss_pred             HH-HhcCCEEEEEcChHHHHHHHHHhccccc--cCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--Ce---EEEECC
Confidence            76 58999999999999999999999 7  6  66676666432 111      1245566666642  11   124688


Q ss_pred             CCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-C
Q 023897          132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-T  204 (275)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~  204 (275)
                      +.+.|...+.|+..+-. +.+.+..+.++++|+.-.++++..+    |.+...+ +.+++++|.+..  + ++..  . .
T Consensus       161 s~A~Eva~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~----Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~ka  235 (365)
T PTZ00345        161 NVANDVAREEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVP----DVIGVEVCGALKNIIALAAGFCDGLGLGTNTKS  235 (365)
T ss_pred             CHHHHHHcCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcC----CcccchhhHHHHHHHHHHHHHHHhcCCChhHHH
Confidence            88777778888766643 3478888999999999999999876    7776654 699999876554  3 3332  2 4


Q ss_pred             cccCcchHHHHHHhhcCCC-CChhhHHHH
Q 023897          205 SMNTKGFETLIRLKESSVN-DSFDLFSGL  232 (275)
Q Consensus       205 ~l~~~~~~~~~rl~~~~~~-~~p~~~~~i  232 (275)
                      .+.++|+++|.|++....+ .+|+++.++
T Consensus       236 alitrgl~Em~~l~~a~g~~~~~~T~~gl  264 (365)
T PTZ00345        236 AIIRIGLEEMKLFGKIFFPNVMDETFFES  264 (365)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhcc
Confidence            6889999999999998732 478887664

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.77  E-value=4.6e-17  Score=143.22  Aligned_cols=168  Identities=20%  Similarity=0.256  Sum_probs=126.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHh---h
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVL---N   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~---~   85 (275)
                      +|||+|||+|.||.++|..|.+.|++|++|||++. .+...+.|+...++++++ ++++|+||+|+|... +..++   +
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~-~~~~d~vi~~vp~~~~~~~v~~~~~   80 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAV-AEQCDVIITMLPNSPHVKEVALGEN   80 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHH-HhcCCEEEEeCCCHHHHHHHHcCcc
Confidence            46899999999999999999999999999999985 455566788777788886 489999999999754 45565   3


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      .+ +.  ++++++++|+++++....+.+.+.+. .+..|+. .|++|....  ...+...++.++   +++.++++++++
T Consensus        81 ~~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~~~l  152 (296)
T PRK11559         81 GIIEG--AKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD-APVSGGEPK--AIDGTLSVMVGG---DKAIFDKYYDLM  152 (296)
T ss_pred             hHhhc--CCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE-cCCCCCHHH--HhhCcEEEEECC---CHHHHHHHHHHH
Confidence            34 55  78899999999998766666666543 3566776 488776532  124555555532   577899999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhh
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~  187 (275)
                      +.+|.+++++.+.....++.++.+
T Consensus       153 ~~~~~~~~~~g~~g~a~~~Kl~~n  176 (296)
T PRK11559        153 KAMAGSVVHTGDIGAGNVTKLANQ  176 (296)
T ss_pred             HHhcCCeEEeCCcCHHHHHHHHHH
Confidence            999999988876554555555543

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.77  E-value=4.9e-18  Score=151.10  Aligned_cols=204  Identities=10%  Similarity=0.107  Sum_probs=150.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCC--------CeEEEEcCC-----hhhhHHHH---------------cCceEecChHHHh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQG--------HILRATSRT-----DHSQLCHR---------------SGISFFSDKRAFL   64 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g--------~~V~~~dr~-----~~~~~a~~---------------~g~~~~~~~~~~~   64 (275)
                      ||+|||+|+||+++|..|+++|        ++|.+|.|+     ++.....+               .++..+++++++ 
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea-   79 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA-   79 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH-
Confidence            6999999999999999999999        999999983     32211110               123467888886 


Q ss_pred             ccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-C------CChhHHHHHHhhCCCCCceeecCCCCCCCCCcC
Q 023897           65 EADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVL-S------VKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN  136 (275)
Q Consensus        65 ~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s------~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~  136 (275)
                      ++++|+||++||++.++++++++ ++  ++++++++.++ +      ....+.+.+++.++.  .+   --+.||..+.|
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~~~--l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~---~~lsGP~~A~E  152 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGH--VKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC---GVLSGANLANE  152 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHHhh--cCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---EEeeCcchHHH
Confidence            58999999999999999999999 77  77787776543 1      111234556665521  11   22568888877


Q ss_pred             CccccceeeeeeecCC----hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-Cc
Q 023897          137 GWKDFAFVYEKVRIRD----EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-TS  205 (275)
Q Consensus       137 ~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~~  205 (275)
                      ...+.|+..+-. +.+    .+..+.++++|+.-.++++..+    |.+...+ +.+++++|.+..  + ++..  . ..
T Consensus       153 va~~~pt~~~ia-~~~~~~~~~~a~~~~~lf~~~~frv~~s~----Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aa  227 (342)
T TIGR03376       153 VAKEKFSETTVG-YRDPADFDVDARVLKALFHRPYFRVNVVD----DVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAA  227 (342)
T ss_pred             HHcCCCceEEEE-eCCCcchHHHHHHHHHHhCCCCEEEEEcC----CcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            778887766543 235    6788999999999889999887    8777755 699999876554  3 2332  2 46


Q ss_pred             ccCcchHHHHHHhhcCCCCChh--hHH
Q 023897          206 MNTKGFETLIRLKESSVNDSFD--LFS  230 (275)
Q Consensus       206 l~~~~~~~~~rl~~~~~~~~p~--~~~  230 (275)
                      +.++|+++|.|++... +++|+  ++.
T Consensus       228 litrgl~Em~~l~~~~-g~~~~~~T~~  253 (342)
T TIGR03376       228 VMRRGLLEMIKFARMF-FPTGEVTFTF  253 (342)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCCCCccc
Confidence            8999999999999987 77776  654

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.77  E-value=7.3e-17  Score=141.97  Aligned_cols=166  Identities=13%  Similarity=0.127  Sum_probs=122.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHh--ccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFL--EADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+|||+|.||++||..|.++|++|.+|||+++ .+...+.|.....+++++.  +..+|+||+|+|++.+.++++++ 
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            5899999999999999999999999999999985 4455556665556665532  24689999999999999999999 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHH-HHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNV-LLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~-l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                      +.  ++++.+++|+++........ ..+....+.+|+.. |++|...+.  ..| ..++..+   +++.++.++.+|+.+
T Consensus        81 ~~--l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda-~vsGg~~~a--~~G-~~~~~gG---~~~~~~~~~~~l~~~  151 (298)
T TIGR00872        81 PT--LEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC-GTSGGVWGR--ERG-YCFMIGG---DGEAFARAEPLFADV  151 (298)
T ss_pred             hh--CCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEec-CCCCCHHHH--hcC-CeeeeCC---CHHHHHHHHHHHHHh
Confidence            77  88999999998875433333 33333456788885 566554332  245 3555432   678899999999999


Q ss_pred             CC---eEEEcChhHHHHHHHHhh
Q 023897          167 GC---KMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       167 G~---~v~~~~~~~hD~~~a~~~  186 (275)
                      +.   .++++.+......+..+.
T Consensus       152 ~~~~~~~~~~G~~G~~~~~K~~~  174 (298)
T TIGR00872       152 APEEQGYLYCGPCGSGHFVKMVH  174 (298)
T ss_pred             cCcCCCEEEECCccHhHHHHHHH
Confidence            86   467777665555666554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.77  E-value=3.8e-17  Score=151.36  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----cCce---EecChHHHhccC---CCEEEEecC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----SGIS---FFSDKRAFLEAD---NDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----~g~~---~~~~~~~~~~~~---aD~iilavp   76 (275)
                      +...++|||||+|.||+.||+.|.++|++|++|||+++. +...+    .|..   ...+++++ ++.   +|+||+|+|
T Consensus         3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~-v~~l~~~dvIi~~v~   81 (493)
T PLN02350          3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDF-VLSIQKPRSVIILVK   81 (493)
T ss_pred             CCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHH-HhcCCCCCEEEEECC
Confidence            445678999999999999999999999999999999853 32222    2543   56788886 354   999999999


Q ss_pred             ch-hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCCh
Q 023897           77 IL-SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDE  153 (275)
Q Consensus        77 ~~-~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~  153 (275)
                      .. .+.+++..+ +.  +.+|.+++|++++.......+.+.+ ..+.+|++ .|++|.+.+.  ..|. .+++++   ++
T Consensus        82 ~~~aV~~Vi~gl~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld-apVSGG~~gA--~~G~-~im~GG---~~  152 (493)
T PLN02350         82 AGAPVDQTIKALSEY--MEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG-MGVSGGEEGA--RNGP-SLMPGG---SF  152 (493)
T ss_pred             CcHHHHHHHHHHHhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-CCCcCCHHHh--cCCC-eEEecC---CH
Confidence            86 467788888 77  8899999999988765555555444 35678887 6888877542  2555 666543   78


Q ss_pred             HHHHHHHHHHHHcCCe------EEEcChhHHHHHHHHhhhhH
Q 023897          154 ATCSSFLRIFESEGCK------MLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       154 ~~~~~~~~l~~~~G~~------v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +.+++++.+|+.++.+      ++++.+.....++.+++++-
T Consensus       153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i  194 (493)
T PLN02350        153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGI  194 (493)
T ss_pred             HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHH
Confidence            8999999999999965      88888777777777776444

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.76  E-value=1.3e-16  Score=141.08  Aligned_cols=161  Identities=17%  Similarity=0.124  Sum_probs=120.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhcc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLEA   66 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~~   66 (275)
                      |+|+|||+|.||+++|..|+++|++|++||++++ .+.           ..+.|             +..+.++.++ ++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a-~~   81 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA-VA   81 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh-hC
Confidence            6899999999999999999999999999999974 222           12334             2567788775 48


Q ss_pred             CCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccce
Q 023897           67 DNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAF  143 (275)
Q Consensus        67 ~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~  143 (275)
                      ++|+|+.|+|.+  ....++.++ ..  .+++.++.  +|++......+.+.+....++++.||+.++...      ...
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~--~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~------~lv  151 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDAL--APPHAILA--SSTSALLASAFTEHLAGRERCLVAHPINPPYLI------PVV  151 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHh--CCCcceEE--EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC------ceE
Confidence            999999999986  355667777 44  45555554  444555566677777656689999999876421      134


Q ss_pred             eeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          144 VYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                      .+++...++++.++.++++++.+|.+++++.++.++.+..
T Consensus       152 eiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n  191 (308)
T PRK06129        152 EVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLN  191 (308)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHH
Confidence            4565555688899999999999999999998777776433

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.75  E-value=2e-16  Score=139.50  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=129.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccC---CCEEEEecCch-hHHHHhhc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEAD---NDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~---aD~iilavp~~-~~~~v~~~   86 (275)
                      |||+|||+|.||+.+|+.|.+.|++|++|||+++ .+...+.|+....+++++ ++.   +|+||+++|+. .+.+++..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~-~~~~~~~dvvi~~v~~~~~~~~v~~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEEL-VAKLPAPRVVWLMVPAGEITDATIDE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHH-HhhcCCCCEEEEEecCCcHHHHHHHH
Confidence            5899999999999999999999999999999985 455566788888888875 344   69999999997 77888888


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++|++++.......+.+.+ ..+..|+. -|++|...+.+  .|. .++..   .+++.+++++.+|+
T Consensus        80 l~~~--l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~--~g~-~~~~g---G~~~~~~~~~~~l~  150 (301)
T PRK09599         80 LAPL--LSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLE--RGY-CLMIG---GDKEAVERLEPIFK  150 (301)
T ss_pred             HHhh--CCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHh--cCC-eEEec---CCHHHHHHHHHHHH
Confidence            8 66  7889999999887765554444433 35678886 79888764322  454 55553   26788999999999


Q ss_pred             HcCC----eEEEcChhHHHHHHHHhhh
Q 023897          165 SEGC----KMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       165 ~~G~----~v~~~~~~~hD~~~a~~~~  187 (275)
                      .++.    +++++.+......+.++.+
T Consensus       151 ~~~~~~~~~~~~~G~~G~g~~~Kl~~n  177 (301)
T PRK09599        151 ALAPRAEDGYLHAGPVGAGHFVKMVHN  177 (301)
T ss_pred             HHcccccCCeEeECCCcHHHHHHHHHH
Confidence            9998    7888887666666666543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.73  E-value=8e-16  Score=137.09  Aligned_cols=198  Identities=15%  Similarity=0.204  Sum_probs=139.4

Q ss_pred             CeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecChHHHhc
Q 023897           12 LKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDKRAFLE   65 (275)
Q Consensus        12 ~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~~~~~~   65 (275)
                      |||.|.|+|+-                    |..||..|+++||+|++|||++. .     ....+.|+..++++.++ +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~ea-a   79 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEA-A   79 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHH-H
Confidence            68999999985                    89999999999999999999874 1     23456788888888886 4


Q ss_pred             cCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHH-HHHHhhCCC---CCceeecCCCCCCCCCcCCcc
Q 023897           66 ADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPR-NVLLQVLPE---EMDVLCTHPMFGPESGQNGWK  139 (275)
Q Consensus        66 ~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~-~~l~~~l~~---~~~~v~~hP~~g~~~~~~~~~  139 (275)
                      .++|+||+|+|++. +.+++..+ +.  ++++++++|+++++.... +.+.+.++.   ...+...||+.-+.  .+  .
T Consensus        80 ~~ADvVIlaVP~~~~v~~Vl~~L~~~--L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G--ae--~  153 (342)
T PRK12557         80 KHGEIHILFTPFGKKTVEIAKNILPH--LPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG--TP--Q  153 (342)
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhh--CCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc--cc--c
Confidence            89999999999988 88999888 77  888999999999887765 566666542   23455667653111  11  1


Q ss_pred             ccceeeeee-----ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHH----HH------Hh-hccccc
Q 023897          140 DFAFVYEKV-----RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIG----RV------LS-ELEIQS  203 (275)
Q Consensus       140 g~~~~~~~~-----~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a----~~------l~-~~~~~~  203 (275)
                      +...++++.     ...+++.+++++++|+.+|.+++++++.    ....+.+++|++.    .+      ++ +.+.++
T Consensus       154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g----~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p  229 (342)
T PRK12557        154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPAD----VVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAP  229 (342)
T ss_pred             chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            222333321     1236778899999999999999999853    3445555565432    11      12 123332


Q ss_pred             ----CcccCcchHHHHHHhhc
Q 023897          204 ----TSMNTKGFETLIRLKES  220 (275)
Q Consensus       204 ----~~l~~~~~~~~~rl~~~  220 (275)
                          ..++..++..+.+|+..
T Consensus       230 ~~~~~~~~~~~~~~~a~l~~~  250 (342)
T PRK12557        230 KEMIEKQILMTLQTMASLVET  250 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence                34667778888888764

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.73  E-value=1.1e-16  Score=136.90  Aligned_cols=219  Identities=18%  Similarity=0.160  Sum_probs=165.0

Q ss_pred             CeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHH
Q 023897           35 HILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNV  111 (275)
Q Consensus        35 ~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~  111 (275)
                      ++|++|+|+++.  ..+.+.|+..+.++.++ +.++|+||+||||+.+.+++.++ +.  +.++++|+++.+..  ..+.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~-~~~aDiIiLaVkP~~i~~vl~~l~~~--~~~~~~ivS~~agi--~~~~   84 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEA-VKEADVVFLAVKPQDLEEVLSELKSE--KGKDKLLISIAAGV--TLEK   84 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHH-HhhCCEEEEEeCHHHHHHHHHHHhhh--ccCCCEEEEecCCC--CHHH
Confidence            689999999853  34455688877888875 58999999999999999999999 65  66677888766532  3567


Q ss_pred             HHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897          112 LLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT  191 (275)
Q Consensus       112 l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~  191 (275)
                      ++++++.+.++++.+|+.....+    +|. ..++.....+++..+.++++|+.+| +++++++++.|.+++++++.|.+
T Consensus        85 l~~~~~~~~~ivR~mPn~~~~~~----~g~-t~~~~~~~~~~~~~~~v~~lf~~~G-~~~~v~E~~~~~~talsgsgPA~  158 (245)
T TIGR00112        85 LSQLLGGTRRVVRVMPNTPAKVG----AGV-TAIAANANVSEEDRALVLALFKAVG-EVVELPEALMDAVTALSGSGPAY  158 (245)
T ss_pred             HHHHcCCCCeEEEECCChHHHHh----CCe-EEEecCCCCCHHHHHHHHHHHHhCC-CEEEECHHHcchHHhhccCcHHH
Confidence            78888755679999998766654    344 3333333345667889999999999 56667888999999999999987


Q ss_pred             HHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHhcc
Q 023897          192 IGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI-HNRFAKQELLDLEAAFEKVKHKLQQK  260 (275)
Q Consensus       192 ~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~-~N~~~~~~l~~~~~~l~~~~~~l~~~  260 (275)
                      ++.   ++.+    .|++.   ..++...+.++.+++... +.+|+.+.+-+. .+..+.+.|+.|.+  ..+++.+.++
T Consensus       159 ~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~-~~~~~~l~~~v~spgGtT~~gl~~Le~--~~~~~~~~~a  235 (245)
T TIGR00112       159 VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEES-GEHPALLKDQVTSPGGTTIAGLAVLEE--KGVRGAVIEA  235 (245)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHcCCCCcHHHHHHHHHHHH--CChHHHHHHH
Confidence            654   4444    35543   468899999999999765 566776655544 66677899999988  5899999888


Q ss_pred             hhHHHhh
Q 023897          261 MEEVQLE  267 (275)
Q Consensus       261 ~~~~~~~  267 (275)
                      ...+..+
T Consensus       236 ~~aa~~r  242 (245)
T TIGR00112       236 VEAAVRR  242 (245)
T ss_pred             HHHHHHH
Confidence            8877643

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.72  E-value=4.2e-16  Score=136.22  Aligned_cols=151  Identities=16%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLE   65 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~   65 (275)
                      ++||+|||+|.||.++|..|+++|++|++||++++ .+.           ..+.|             +..+++.++  +
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--~   80 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD--L   80 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--h
Confidence            46899999999999999999999999999999985 221           12223             345667665  3


Q ss_pred             cCCCEEEEecCchhH--HHHhhcC-CCCCCCCCcEE-EeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           66 ADNDVILISTSILSL--SEVLNSL-PVHCLQRRTLI-ADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        66 ~~aD~iilavp~~~~--~~v~~~l-~~~~l~~~~iv-~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      ++||+||+|+|++..  .+++.++ +.  +++++++ +++++.+.   ..+.+.++...++++.||+.++...+    +.
T Consensus        81 ~~aDlVi~av~e~~~~k~~~~~~l~~~--~~~~~il~s~ts~~~~---~~la~~~~~~~r~ig~h~~~P~~~~~----~v  151 (282)
T PRK05808         81 KDADLVIEAATENMDLKKKIFAQLDEI--AKPEAILATNTSSLSI---TELAAATKRPDKVIGMHFFNPVPVMK----LV  151 (282)
T ss_pred             ccCCeeeecccccHHHHHHHHHHHHhh--CCCCcEEEECCCCCCH---HHHHHhhCCCcceEEeeccCCcccCc----cE
Confidence            899999999997654  6888888 77  8889888 45555443   45666665556899999998776531    22


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                        -+++...++++..+.+.++++.+|..++.+.
T Consensus       152 --ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~  182 (282)
T PRK05808        152 --EIIRGLATSDATHEAVEALAKKIGKTPVEVK  182 (282)
T ss_pred             --EEeCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence              2444556688999999999999999988873

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.71  E-value=3.6e-16  Score=144.60  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----cC--ceEecChHHHhcc---CCCEEEEecCch-h
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----SG--ISFFSDKRAFLEA---DNDVILISTSIL-S   79 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----~g--~~~~~~~~~~~~~---~aD~iilavp~~-~   79 (275)
                      +.+|||||+|.||++||..|.++||+|++|||+++. +...+    .|  +..+.+++++ ++   ++|+||+++|+. .
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~-v~~l~~~d~Iil~v~~~~~   79 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL-VNSLKKPRKVILLIKAGEA   79 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHH-HhcCCCCCEEEEEeCChHH
Confidence            358999999999999999999999999999999853 32222    25  3467788886 34   489999997664 6


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHH
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      +.++++++ +.  +.+|.+++|+++....... ...+....+.+|++ .|++|.+.+.  ..|. .++.++   ++++++
T Consensus        80 v~~vi~~l~~~--L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld-apVSGG~~gA--~~G~-~lm~GG---~~~a~~  150 (470)
T PTZ00142         80 VDETIDNLLPL--LEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG-MGVSGGEEGA--RYGP-SLMPGG---NKEAYD  150 (470)
T ss_pred             HHHHHHHHHhh--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc-CCCCCCHHHH--hcCC-EEEEeC---CHHHHH
Confidence            78999998 87  8999999999876543333 33333345788887 5888876432  2454 666543   788999


Q ss_pred             HHHHHHHHcCCe------EEEcChhHHHHHHHHhhhh
Q 023897          158 SFLRIFESEGCK------MLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       158 ~~~~l~~~~G~~------v~~~~~~~hD~~~a~~~~l  188 (275)
                      +++++|+.++.+      +.++.+.....++.+++++
T Consensus       151 ~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~  187 (470)
T PTZ00142        151 HVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNG  187 (470)
T ss_pred             HHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHH
Confidence            999999999988      7788877666666666543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=7.3e-16  Score=136.52  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=113.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cC--------------ceEecChHHHhccCCCE
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SG--------------ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g--------------~~~~~~~~~~~~~~aD~   70 (275)
                      .+||+|||+|.||+++|..|++.|++|++||++++ .+.+.+     .|              +..+++++++ ++++|+
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~aDl   82 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA-VSGADL   82 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH-hccCCE
Confidence            46899999999999999999999999999999874 222211     11              2456677775 489999


Q ss_pred             EEEecCchh--HHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897           71 ILISTSILS--LSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE  146 (275)
Q Consensus        71 iilavp~~~--~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~  146 (275)
                      ||+|||++.  ..+++.++ +.  ++++++++ ++++..   ...+.+.++...+|++.||..++...      ..+.++
T Consensus        83 Vi~av~~~~~~~~~v~~~l~~~--~~~~~ii~s~tsg~~---~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~  151 (311)
T PRK06130         83 VIEAVPEKLELKRDVFARLDGL--CDPDTIFATNTSGLP---ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVV  151 (311)
T ss_pred             EEEeccCcHHHHHHHHHHHHHh--CCCCcEEEECCCCCC---HHHHHhhcCCcccEEEEccCCCCccC------ceEEEe
Confidence            999999974  56788888 65  67777774 444432   45666666655689999997776542      123444


Q ss_pred             eeecCChHHHHHHHHHHHHcCCeEEEcChh
Q 023897          147 KVRIRDEATCSSFLRIFESEGCKMLEMSCE  176 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~  176 (275)
                      +...++++.++.++++++.+|..++++.++
T Consensus       152 ~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d  181 (311)
T PRK06130        152 RGDKTSPQTVATTMALLRSIGKRPVLVKKD  181 (311)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            444457889999999999999988888654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.70  E-value=5.8e-15  Score=138.36  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=114.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHH-------------------HcC-ceEecChHHHhccCCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCH-------------------RSG-ISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~-------------------~~g-~~~~~~~~~~~~~~aD   69 (275)
                      .|||+|||+|.||+++|..|.++|++|++||++++. +...                   ..| +..+++++++ +++||
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea-~~~aD   82 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA-VAGAD   82 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH-hcCCC
Confidence            368999999999999999999999999999999852 2110                   112 5677788875 48999


Q ss_pred             EEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897           70 VILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE  146 (275)
Q Consensus        70 ~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~  146 (275)
                      +|+.|+|++.  -..++.++ +.  ++++++|...+|  +.....+.+.+....+++..||+.++..      +....++
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~~~--~~~~~iI~SsTs--gi~~s~l~~~~~~~~r~~~~hP~nP~~~------~~Lvevv  152 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEIDAA--ARPDALIGSSTS--GFLPSDLQEGMTHPERLFVAHPYNPVYL------LPLVELV  152 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHhh--CCCCcEEEEcCC--CCCHHHHHhhcCCcceEEEEecCCCccc------CceEEEc
Confidence            9999999985  34566677 55  677776654333  2224466666665567889999887753      2334556


Q ss_pred             eeecCChHHHHHHHHHHHHcCCeEEEcCh
Q 023897          147 KVRIRDEATCSSFLRIFESEGCKMLEMSC  175 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~  175 (275)
                      ++..++++.+++++++++.+|.+++++..
T Consensus       153 ~g~~t~~e~~~~~~~~~~~lG~~~v~~~k  181 (495)
T PRK07531        153 GGGKTSPETIRRAKEILREIGMKPVHIAK  181 (495)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEeecC
Confidence            55556788999999999999999988864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.70  E-value=2e-15  Score=132.75  Aligned_cols=152  Identities=14%  Similarity=0.117  Sum_probs=112.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~   64 (275)
                      ..+||+|||+|.||.++|..|+.+|++|++||++++ .+.           ..+.|             ....++.+.  
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--   80 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE--   80 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH--
Confidence            346899999999999999999999999999999984 221           11122             234445543  


Q ss_pred             ccCCCEEEEecC--chhHHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           65 EADNDVILISTS--ILSLSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        65 ~~~aD~iilavp--~~~~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                      +++||+||.|+|  ++....++.++ +.  ++++++++ +++++.   ...+++.+....++++.||+.+|...      
T Consensus        81 ~~~aD~Vieav~e~~~~k~~v~~~l~~~--~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g~h~~~pp~~~------  149 (295)
T PLN02545         81 LRDADFIIEAIVESEDLKKKLFSELDRI--CKPSAILASNTSSIS---ITRLASATQRPQQVIGMHFMNPPPIM------  149 (295)
T ss_pred             hCCCCEEEEcCccCHHHHHHHHHHHHhh--CCCCcEEEECCCCCC---HHHHHhhcCCCcceEEEeccCCcccC------
Confidence            489999999999  55566778878 66  78888886 566553   34566665555689999999888743      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..+.+++...++++..+.++++++.+|..++++.
T Consensus       150 ~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~  183 (295)
T PLN02545        150 KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ  183 (295)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence            2244555555688899999999999998887764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.69  E-value=9.9e-17  Score=141.85  Aligned_cols=195  Identities=23%  Similarity=0.321  Sum_probs=125.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-C
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-P   88 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~   88 (275)
                      +.|||+|||+|.||+++|..|.++||+|++|+|++.            .+++++ ++++|+||+|+|...+.++++.+ +
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~-~~~advvi~~vp~~~~~~v~~~l~~   69 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAV-LADADVIVSAVSMKGVRPVAEQVQA   69 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHH-HhcCCEEEEECChHHHHHHHHHHHH
Confidence            458999999999999999999999999999999863            355665 47999999999999999999888 5


Q ss_pred             CCCCCCCcEEEeCCC-CCh----hHHHHHHhhCCCCCceeecCCC---CCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           89 VHCLQRRTLIADVLS-VKE----YPRNVLLQVLPEEMDVLCTHPM---FGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s-~k~----~~~~~l~~~l~~~~~~v~~hP~---~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                      . .+.+++++++++. ...    ...+.+.+.+       ..+|+   .||..+.+...+.+...+.. +.+.+..+.++
T Consensus        70 ~-~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~-------~~~~v~~i~gp~~a~ei~~~~~~~~~~a-g~~~~~~~~v~  140 (308)
T PRK14619         70 L-NLPPETIIVTATKGLDPETTRTPSQIWQAAF-------PNHPVVVLSGPNLSKEIQQGLPAATVVA-SRDLAAAETVQ  140 (308)
T ss_pred             h-cCCCCcEEEEeCCcccCCCCcCHHHHHHHHc-------CCCceEEEECCCcHHHHhcCCCeEEEEE-eCCHHHHHHHH
Confidence            2 1577888888653 211    1122222222       23454   45554332223333322222 23678899999


Q ss_pred             HHHHHcCCeEEEcChhHHHHHH-HHhhhhHHHHHHHHh--h---ccccc-CcccCcchHHHHHHhhcCCCCChhhHHH
Q 023897          161 RIFESEGCKMLEMSCEEHDKVA-AKSQFLTHTIGRVLS--E---LEIQS-TSMNTKGFETLIRLKESSVNDSFDLFSG  231 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~~~hD~~~-a~~~~lp~~~a~~l~--~---~~~~~-~~l~~~~~~~~~rl~~~~~~~~p~~~~~  231 (275)
                      ++|+..|.+++..+    |.+. .+.+.+.++++.+..  +   .+.+. ..+...++.++.++++.. +.+|+.+.+
T Consensus       141 ~ll~~~~~~~~~~~----d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~-G~~~~t~~~  213 (308)
T PRK14619        141 QIFSSERFRVYTNS----DPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHL-GAQTETFYG  213 (308)
T ss_pred             HHhCCCcEEEEecC----CchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh-CCCcccccc
Confidence            99999999988765    3333 233455555543322  1   11111 234566677777777765 656655543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.69  E-value=4.4e-16  Score=138.64  Aligned_cols=211  Identities=21%  Similarity=0.262  Sum_probs=129.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--------------CceEecChHHHhccCCCEEEEec
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--------------GISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--------------g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ||||+|||+|.||+.+|..|.+.|++|++|+|++. .+...+.              ++...++++++ ++++|+||+||
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~v   79 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEA-LADADLILVAV   79 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHH-HhCCCEEEEeC
Confidence            47999999999999999999999999999999974 3322222              34556677765 47999999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCC-CCChh----HHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVL-SVKEY----PRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~----~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      |++.+.+++..+ +.  ++++++++++. ++...    ..+.+++.++..   ....++.+|....+...+.+..+... 
T Consensus        80 ~~~~~~~v~~~l~~~--~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~~-  153 (325)
T PRK00094         80 PSQALREVLKQLKPL--LPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL---APIAVLSGPSFAKEVARGLPTAVVIA-  153 (325)
T ss_pred             CHHHHHHHHHHHHhh--cCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC---CceEEEECccHHHHHHcCCCcEEEEE-
Confidence            999999999998 76  78889888876 33321    234445544321   11123344443221112333322212 


Q ss_pred             cCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHh-----hccccc-CcccCcchHHHHHHhhcCCC
Q 023897          150 IRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLS-----ELEIQS-TSMNTKGFETLIRLKESSVN  223 (275)
Q Consensus       150 ~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~-----~~~~~~-~~l~~~~~~~~~rl~~~~~~  223 (275)
                      +.+.+.++++.++|+..|.+++..+.-......++   +.++++.+..     ..+.+. ..+....+.++.++++.. +
T Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~---~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~-G  229 (325)
T PRK00094        154 STDEELAERVQELFHSPYFRVYTNTDVIGVELGGA---LKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVAL-G  229 (325)
T ss_pred             eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHH---HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh-C
Confidence            23677889999999999988766542221122222   2222222211     111111 234555667777777665 6


Q ss_pred             CChhhHHHH
Q 023897          224 DSFDLFSGL  232 (275)
Q Consensus       224 ~~p~~~~~i  232 (275)
                      -+|+.+.++
T Consensus       230 ~d~~~~~~~  238 (325)
T PRK00094        230 ANPETFLGL  238 (325)
T ss_pred             CChhhhhcc
Confidence            666666554

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.69  E-value=6.5e-16  Score=142.93  Aligned_cols=168  Identities=17%  Similarity=0.172  Sum_probs=123.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-----CceEecChHHHh--ccCCCEEEEecCc-hhHHHH
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-----GISFFSDKRAFL--EADNDVILISTSI-LSLSEV   83 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-----g~~~~~~~~~~~--~~~aD~iilavp~-~~~~~v   83 (275)
                      +|||||+|.||++||+.|.++|++|++|||+++ .+...+.     ++....++++++  ++.+|+||+++|+ ..+.++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            489999999999999999999999999999985 3333332     255666777642  1368999999999 578899


Q ss_pred             hhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           84 LNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ++++ +.  +.+|.+++|++++...... ..++....+..|+++ |++|...+.  ..|. .++.+   .+++.++++++
T Consensus        81 i~~l~~~--L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda-pVsGG~~gA--~~G~-~im~G---G~~~a~~~~~p  151 (467)
T TIGR00873        81 INQLLPL--LEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS-GVSGGEEGA--RKGP-SIMPG---GSAEAWPLVAP  151 (467)
T ss_pred             HHHHHhh--CCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC-CCCCCHHHH--hcCC-cCCCC---CCHHHHHHHHH
Confidence            9998 87  8999999999987644433 333333456888874 666655322  2454 55543   27889999999


Q ss_pred             HHHHcCCeE------EEcChhHHHHHHHHhhhhH
Q 023897          162 IFESEGCKM------LEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       162 l~~~~G~~v------~~~~~~~hD~~~a~~~~lp  189 (275)
                      +|+.++.++      .++.+.....++.+++++.
T Consensus       152 ~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i  185 (467)
T TIGR00873       152 IFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGI  185 (467)
T ss_pred             HHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHH
Confidence            999999873      6777776666777765443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.69  E-value=2.3e-15  Score=131.99  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=112.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-------H----c-------------CceEecChHHHhcc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-------R----S-------------GISFFSDKRAFLEA   66 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-------~----~-------------g~~~~~~~~~~~~~   66 (275)
                      .||+|||+|.||+++|..|+++|++|++||++++ .+.+.       .    .             +++.+++.+++ ++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~   80 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA-VA   80 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh-hc
Confidence            5899999999999999999999999999999984 22211       1    1             23456777775 48


Q ss_pred             CCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEE-EeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897           67 DNDVILISTSILS--LSEVLNSL-PVHCLQRRTLI-ADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA  142 (275)
Q Consensus        67 ~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv-~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~  142 (275)
                      ++|+||.|+|.+.  ...++.++ +.  +++++++ ++++++..   ..+.+.+....++++.|++.++..      +..
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~--~~~~~il~~~tSt~~~---~~l~~~~~~~~r~~g~h~~~Pv~~------~~L  149 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAH--APAECYIATNTSTMSP---TEIASFTKRPERVIAMHFFNPVHK------MKL  149 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhh--CCCCcEEEEcCCCCCH---HHHHhhcCCcccEEEEecCCCccc------Cce
Confidence            9999999999975  34666777 65  7888877 45555433   345565554457899999854432      234


Q ss_pred             eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      +.++++..++++.+++++++++.+|.+++++.
T Consensus       150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~  181 (288)
T PRK09260        150 VELIRGLETSDETVQVAKEVAEQMGKETVVVN  181 (288)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            56666655688999999999999999998885

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.69  E-value=8.1e-16  Score=137.77  Aligned_cols=212  Identities=15%  Similarity=0.232  Sum_probs=145.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHc---------C------ceEecChHHHhccCCCEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRS---------G------ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~---------g------~~~~~~~~~~~~~~aD~i   71 (275)
                      ...+|||+|||+|.||+++|..|+++| +|++|.|+++. +...+.         +      +..+++++++ ++++|+|
T Consensus         4 ~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a-~~~aDlV   81 (341)
T PRK12439          4 AKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEA-ANCADVV   81 (341)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHH-HhcCCEE
Confidence            345689999999999999999999999 68888888742 222111         1      2456677765 4899999


Q ss_pred             EEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-CCCh----hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceee
Q 023897           72 LISTSILSLSEVLNSL-PVHCLQRRTLIADVL-SVKE----YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVY  145 (275)
Q Consensus        72 ilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~----~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~  145 (275)
                      |+|||++.++++++++ +.  ++++++++.+. ++..    ...+.+++.++.....+    +.||....+...|.++..
T Consensus        82 ilavps~~~~~vl~~i~~~--l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~----l~GP~~a~ev~~g~~t~~  155 (341)
T PRK12439         82 VMGVPSHGFRGVLTELAKE--LRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGI----LAGPNIAREVAEGYAAAA  155 (341)
T ss_pred             EEEeCHHHHHHHHHHHHhh--cCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEE----EECCCHHHHHHcCCCeEE
Confidence            9999999999999999 77  77777666443 2211    12355666554221122    345555444445666544


Q ss_pred             eeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-CcccCcchHHHHHHh
Q 023897          146 EKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-TSMNTKGFETLIRLK  218 (275)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~~l~~~~~~~~~rl~  218 (275)
                      +.. +.+++..+.++++|+.-+++++..+    |...... ..+.++++.+..  + .+..  . ..+.+++++++.|++
T Consensus       156 via-~~~~~~~~~v~~lf~~~~~~v~~s~----Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~  230 (341)
T PRK12439        156 VLA-MPDQHLATRLSPLFRTRRFRVYTTD----DVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLG  230 (341)
T ss_pred             EEE-eCCHHHHHHHHHHhCCCCEEEEEcC----chHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            332 2366778999999999999998876    6665544 578887765433  2 2222  2 357789999999999


Q ss_pred             hcCCCCChhhHHHHH
Q 023897          219 ESSVNDSFDLFSGLY  233 (275)
Q Consensus       219 ~~~~~~~p~~~~~i~  233 (275)
                      ... +.+|+++.++.
T Consensus       231 ~a~-G~~~~t~~gl~  244 (341)
T PRK12439        231 VAM-GGNPETFAGLA  244 (341)
T ss_pred             HHh-CCCcccccccc
Confidence            987 88898776643

>PLN02858 fructose-bisphosphate aldolase

Probab=99.66  E-value=5.8e-15  Score=151.50  Aligned_cols=170  Identities=15%  Similarity=0.073  Sum_probs=129.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC-chhHHHHhh--
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS-ILSLSEVLN--   85 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp-~~~~~~v~~--   85 (275)
                      ..++|||||+|.||..||..|.+.|++|++|||++. .......|.....++.++ ++++|+||+|+| +..+.+++.  
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~-~~~aDvVi~~V~~~~~v~~Vl~g~  401 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEV-AKDVDVLVIMVANEVQAENVLFGD  401 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEecCChHHHHHHHhch
Confidence            447899999999999999999999999999999985 445556677777888886 589999999999 566778873  


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC---CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP---EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~---~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                       .+ +.  +++|++++|++++.....+.+.+.+.   .+..|+. -|+.|....  ...|...+++.+   +++.+++++
T Consensus       402 ~g~~~~--l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~--A~~G~L~imvgG---~~~~~~~~~  473 (1378)
T PLN02858        402 LGAVSA--LPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR--AAMGTLTIMASG---TDEALKSAG  473 (1378)
T ss_pred             hhHHhc--CCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh--hhcCCceEEEEC---CHHHHHHHH
Confidence             24 44  68899999999988777666666543   4677876 477776643  225666666643   677899999


Q ss_pred             HHHHHcCCeEEE-cChhHHHHHHHHhhhh
Q 023897          161 RIFESEGCKMLE-MSCEEHDKVAAKSQFL  188 (275)
Q Consensus       161 ~l~~~~G~~v~~-~~~~~hD~~~a~~~~l  188 (275)
                      .+|+.+|.++++ .++......+.++.++
T Consensus       474 plL~~lg~~i~~~~g~~G~a~~~KL~nN~  502 (1378)
T PLN02858        474 SVLSALSEKLYVIKGGCGAGSGVKMVNQL  502 (1378)
T ss_pred             HHHHHHhCcEEEeCCCCCHHHHHHHHHHH
Confidence            999999988876 4545556666666433

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.66  E-value=7.7e-15  Score=129.30  Aligned_cols=187  Identities=19%  Similarity=0.122  Sum_probs=130.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh-h
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL-N   85 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~-~   85 (275)
                      .+.++|+|||+|+||.++|..|++.|++|++++++..  ...+.+.|+... +.+++ ++++|+|++++|+....+++ +
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~ea-a~~ADVVvLaVPd~~~~~V~~~   92 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEA-AKWADVIMILLPDEVQAEVYEE   92 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHH-HhcCCEEEEcCCHHHHHHHHHH
Confidence            4568999999999999999999999999998887642  345666787664 77775 58999999999999889998 7


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCC-Cc--CCccccceeeeeeecCChHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES-GQ--NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ++ +.  ++++++++-+.+...   ...+...+.+..++..+|..+... ..  ..-.|.+.++......+.++.+.+..
T Consensus        93 ~I~~~--Lk~g~iL~~a~G~~i---~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~  167 (330)
T PRK05479         93 EIEPN--LKEGAALAFAHGFNI---HFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA  167 (330)
T ss_pred             HHHhc--CCCCCEEEECCCCCh---hhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence            78 77  888988865555432   334444566778999999876651 11  11256776663322235778899999


Q ss_pred             HHHHcCCeEE-----EcChh-HHHHHHH---HhhhhHHHHH---HHHhhcccc
Q 023897          162 IFESEGCKML-----EMSCE-EHDKVAA---KSQFLTHTIG---RVLSELEIQ  202 (275)
Q Consensus       162 l~~~~G~~v~-----~~~~~-~hD~~~a---~~~~lp~~~a---~~l~~~~~~  202 (275)
                      +++.+|+...     ...++ +.|.+..   +++.+..++.   ..|.+.|++
T Consensus       168 l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~  220 (330)
T PRK05479        168 YAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ  220 (330)
T ss_pred             HHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence            9999998753     33333 3676654   2334444443   344555654

>PLN02858 fructose-bisphosphate aldolase

Probab=99.66  E-value=7.9e-15  Score=150.49  Aligned_cols=170  Identities=11%  Similarity=0.046  Sum_probs=132.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---h
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---N   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~   85 (275)
                      ..||||||+|.||..||..|.++||+|++|||++. .+...+.|.....++.++ +++||+||+|+|.. .+.+++   .
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~-a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEA-AKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEEcCChHHHHHHHhchh
Confidence            46899999999999999999999999999999985 455666788888899996 58999999999986 456776   3


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CC--CceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EE--MDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~--~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      .+ +.  +++|.+++|++++.....+.+.+.+. .+  ..|+. -|++|...+.  ..|...+++++   +++.+++++.
T Consensus        83 g~~~~--l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~~A--~~G~L~imvGG---~~~~~~~~~p  154 (1378)
T PLN02858         83 GAAKG--LQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMSDL--LNGKLMIIASG---RSDAITRAQP  154 (1378)
T ss_pred             hHHhc--CCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHHHH--hcCCeEEEEcC---CHHHHHHHHH
Confidence            45 54  78899999999988777777666543 34  56776 5888776432  25666666643   6788999999


Q ss_pred             HHHHcCCeEEE-cChhHHHHHHHHhhhhH
Q 023897          162 IFESEGCKMLE-MSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       162 l~~~~G~~v~~-~~~~~hD~~~a~~~~lp  189 (275)
                      +|+.+|.++++ +.+......+.+++++-
T Consensus       155 ~l~~~g~~i~~~~G~~G~g~~~KL~nN~l  183 (1378)
T PLN02858        155 FLSAMCQKLYTFEGEIGAGSKVKMVNELL  183 (1378)
T ss_pred             HHHHhcCceEEecCCCCHhHHHHHHHHHH
Confidence            99999988875 47666677777765443

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.66  E-value=3.2e-15  Score=124.35  Aligned_cols=239  Identities=17%  Similarity=0.162  Sum_probs=178.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCCh-hhh-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTD-HSQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~-~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      |+|||||+|+|..++++.+...|.    +++.+..+. ... .....|+..+.+..+. .+.+|+++++|+++.+.+++.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~-~~~s~v~~~svKp~~i~~vls   79 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEV-LQASDVVFLSVKPQVIESVLS   79 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHH-HhhccceeEeecchhHHHHhh
Confidence            689999999999999999999985    677777744 333 3677788665555665 489999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      ++ +.  +..+.+++.+.-.+.  +..+++.++...++++.+|+.+...+    .+.. +++.......++.+.++++++
T Consensus        80 ~~~~~--~~~~~iivS~aaG~t--l~~l~~~l~~~~rviRvmpNtp~~v~----eg~s-v~~~g~~~~~~D~~l~~~ll~  150 (267)
T KOG3124|consen   80 EIKPK--VSKGKIIVSVAAGKT--LSSLESKLSPPTRVIRVMPNTPSVVG----EGAS-VYAIGCHATNEDLELVEELLS  150 (267)
T ss_pred             cCccc--cccceEEEEEeeccc--HHHHHHhcCCCCceEEecCCChhhhh----cCcE-EEeeCCCcchhhHHHHHHHHH
Confidence            99 54  677888887664333  46677777767889999998877765    3443 444444445667799999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhhHHHH---HHHHhhcccc----c---CcccCcchHHHHHHhhcCCCCChhhHHHHHH
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFLTHTI---GRVLSELEIQ----S---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI  234 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~---a~~l~~~~~~----~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~  234 (275)
                      .+| .+..+++.-.|.+++++++.|.+.   ..+|++.|+.    .   .+++.++..+..++.... +++|....|-+.
T Consensus       151 ~vG-~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s-~qHP~~Lkd~V~  228 (267)
T KOG3124|consen  151 AVG-LCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLAS-GQHPAQLKDDVC  228 (267)
T ss_pred             hcC-cceeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhc-cCCcHHHhCCCC
Confidence            999 567788999999999999999754   3577765443    2   357788888888888776 788987766655


Q ss_pred             HCH-HHHHHHHHHHHHHHHHHHHHhcchhHH
Q 023897          235 HNR-FAKQELLDLEAAFEKVKHKLQQKMEEV  264 (275)
Q Consensus       235 ~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~  264 (275)
                      +-. .++..+..|++  .-||..+.++.+++
T Consensus       229 SPgG~TI~glh~LE~--ggfRs~linaVeaa  257 (267)
T KOG3124|consen  229 SPGGTTIYGLHALEK--GGFRSGLINAVEAA  257 (267)
T ss_pred             CCCcchHHHHHHHHh--CCchhHHHHHHHHH
Confidence            222 34577776666  35777777776665

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.65  E-value=1.7e-14  Score=126.77  Aligned_cols=152  Identities=19%  Similarity=0.180  Sum_probs=110.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------HcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~g-------------~~~~~~~~~~~   64 (275)
                      ..+||+|||+|.||.++|..|+.+|++|++||++++ ...+.           +.|             ++.+++.++  
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   80 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED--   80 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH--
Confidence            457899999999999999999999999999999984 22211           123             345667755  


Q ss_pred             ccCCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           65 EADNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        65 ~~~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                      ++++|+||.|+|.+  ....++.++ +.  ++++++++ ++++..  + ..+.+.+....++++.|++.++...     +
T Consensus        81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~--~-s~la~~~~~~~r~~g~h~~~p~~~~-----~  150 (292)
T PRK07530         81 LADCDLVIEAATEDETVKRKIFAQLCPV--LKPEAILATNTSSIS--I-TRLASATDRPERFIGIHFMNPVPVM-----K  150 (292)
T ss_pred             hcCCCEEEEcCcCCHHHHHHHHHHHHhh--CCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEeeccCCcccC-----c
Confidence            37999999999985  345777788 66  78888887 444443  2 3566655444678999998855432     1


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      . ..+.....++++.++.+.++++.+|..++++.
T Consensus       151 ~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~  183 (292)
T PRK07530        151 L-VELIRGIATDEATFEAAKEFVTKLGKTITVAE  183 (292)
T ss_pred             e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            2 22333445688899999999999999888764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.65  E-value=1.4e-14  Score=127.91  Aligned_cols=161  Identities=16%  Similarity=0.082  Sum_probs=118.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-----------HHc---------CceEecChHHHhccCCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-----------HRS---------GISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-----------~~~---------g~~~~~~~~~~~~~~aD   69 (275)
                      ..||+|||+|.||+.+|..|+.+|++|++||++++. ..+           .+.         .+..+++++++ +++||
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a-v~~aD   85 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC-VADAD   85 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH-hcCCC
Confidence            468999999999999999999999999999999742 211           112         12566788775 48999


Q ss_pred             EEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897           70 VILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE  146 (275)
Q Consensus        70 ~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~  146 (275)
                      +|+-|+|.+.  -.+++.++ ..  +++++++...+|  +.....+.+.+....++++.||..+|..-      ..+-++
T Consensus        86 lViEavpE~l~vK~~lf~~l~~~--~~~~aIlaSnTS--~l~~s~la~~~~~p~R~~g~HffnP~~~~------pLVEVv  155 (321)
T PRK07066         86 FIQESAPEREALKLELHERISRA--AKPDAIIASSTS--GLLPTDFYARATHPERCVVGHPFNPVYLL------PLVEVL  155 (321)
T ss_pred             EEEECCcCCHHHHHHHHHHHHHh--CCCCeEEEECCC--ccCHHHHHHhcCCcccEEEEecCCccccC------ceEEEe
Confidence            9999999864  34677777 66  788887765444  33456667666666789999998777642      123344


Q ss_pred             eeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHH
Q 023897          147 KVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA  182 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~  182 (275)
                      ++..++++.++.+.++++.+|..++++..+.-..+.
T Consensus       156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~  191 (321)
T PRK07066        156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIA  191 (321)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHH
Confidence            555678999999999999999998887433333333

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.65  E-value=1.8e-14  Score=132.39  Aligned_cols=170  Identities=15%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHH-------------------HcC-ceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCH-------------------RSG-ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~-------------------~~g-~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.||..+|..|+++||+|++||++++. +...                   +.| ++.++++.++ ++++|+
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~-~~~adv   79 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDA-IRDADV   79 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHH-HhhCCE
Confidence            58999999999999999999999999999999853 2111                   123 5666777775 489999


Q ss_pred             EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHH-hhCCC------CC-ceeecCCCCCC
Q 023897           71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLL-QVLPE------EM-DVLCTHPMFGP  131 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~-~~l~~------~~-~~v~~hP~~g~  131 (275)
                      ||+|||..          .+.++++.+ +.  +++++++++.+++.....+.+. ..+..      +. ..+..+|.+..
T Consensus        80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        80 IIICVPTPLKEDGSPDLSYVESAAETIAKH--LRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEEeCCCCCCCCCcChHHHHHHHHHHHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence            99999975          367777888 66  7889999998876544433332 22111      11 23556675544


Q ss_pred             CCC-cCCccccceeeeeeecCChHHHHHHHHHHHHcC-CeEEEcChhHHHHHHHHhhh
Q 023897          132 ESG-QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG-CKMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       132 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~v~~~~~~~hD~~~a~~~~  187 (275)
                      +-. ...+...+.++.+   .+++..++++++++.++ ..++.++..+...++.++.+
T Consensus       158 ~G~~~~~~~~~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N  212 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN  212 (411)
T ss_pred             CCChhhhhcCCCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH
Confidence            311 1112223355553   27888999999999997 45666555555566666543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.64  E-value=2.3e-15  Score=134.34  Aligned_cols=206  Identities=17%  Similarity=0.215  Sum_probs=123.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--------C------ceEecChHHHhccCCCEEEEec
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--------G------ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--------g------~~~~~~~~~~~~~~aD~iilav   75 (275)
                      +|||+|||+|.||+++|..|.++|++|++|+|+++ .+.....        |      +..+++++++ ++++|+||+|+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~aD~Vi~~v   82 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAGADFAVVAV   82 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcCCCEEEEEC
Confidence            57999999999999999999999999999999874 3222221        3      3456678775 48999999999


Q ss_pred             CchhHHHHhhcCCCCCCCCCcEEEeCCC-CChh--HHHHHHhhCC----CCCceeecCCCCCCCCCcCCccccceeeeee
Q 023897           76 SILSLSEVLNSLPVHCLQRRTLIADVLS-VKEY--PRNVLLQVLP----EEMDVLCTHPMFGPESGQNGWKDFAFVYEKV  148 (275)
Q Consensus        76 p~~~~~~v~~~l~~~~l~~~~iv~d~~s-~k~~--~~~~l~~~l~----~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~  148 (275)
                      |.+.+.++++.+     +++.+++++++ ....  ..+.+.+.++    .+..+     +.||..+.+...+.+...+-.
T Consensus        83 ~~~~~~~v~~~l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~-----~~gP~~a~~~~~~~~~~~~~~  152 (328)
T PRK14618         83 PSKALRETLAGL-----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV-----LSGPNHAEEIARFLPAATVVA  152 (328)
T ss_pred             chHHHHHHHHhc-----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE-----EECccHHHHHHcCCCeEEEEE
Confidence            999988888665     34567776654 2211  0223333321    12222     224443322223333222211


Q ss_pred             ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHhh-----ccccc-CcccCcchHHHHHHhhcC
Q 023897          149 RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLSE-----LEIQS-TSMNTKGFETLIRLKESS  221 (275)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~~-----~~~~~-~~l~~~~~~~~~rl~~~~  221 (275)
                       +.+++..++++++|+..|.+++..+    |...... ..+.++++.++..     .+.+. ..+...+++++.++++..
T Consensus       153 -~~~~~~~~~v~~ll~~~~~~v~~~~----di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~  227 (328)
T PRK14618        153 -SPEPGLARRVQAAFSGPSFRVYTSR----DRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVAL  227 (328)
T ss_pred             -eCCHHHHHHHHHHhCCCcEEEEecC----CccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHh
Confidence             2367788999999999999888754    3222222 2344443332221     11111 234556666666666665


Q ss_pred             CCCChhhHHHHH
Q 023897          222 VNDSFDLFSGLY  233 (275)
Q Consensus       222 ~~~~p~~~~~i~  233 (275)
                       +.+|+.+.+++
T Consensus       228 -G~~~~~~~~~~  238 (328)
T PRK14618        228 -GAEEATFYGLS  238 (328)
T ss_pred             -CCCccchhcCc
Confidence             66666555553

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.64  E-value=9.4e-15  Score=128.25  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=113.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH--------------HcC-------------ceEecChHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH--------------RSG-------------ISFFSDKRA   62 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~--------------~~g-------------~~~~~~~~~   62 (275)
                      ..||+|||+|.||+++|..|+++|++|++||++++ .+.+.              +.|             +..+++.+ 
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   81 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE-   81 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH-
Confidence            46899999999999999999999999999999984 32111              011             23445554 


Q ss_pred             HhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcc
Q 023897           63 FLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWK  139 (275)
Q Consensus        63 ~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~  139 (275)
                      . ++++|+||.|+|++.  ..+++.++ +.  +++++++++.+|  +.....+.+.+....++++.||+.++...     
T Consensus        82 ~-~~~aDlVieav~e~~~~k~~~~~~l~~~--~~~~~il~S~ts--g~~~~~la~~~~~~~r~ig~hf~~P~~~~-----  151 (291)
T PRK06035         82 S-LSDADFIVEAVPEKLDLKRKVFAELERN--VSPETIIASNTS--GIMIAEIATALERKDRFIGMHWFNPAPVM-----  151 (291)
T ss_pred             H-hCCCCEEEEcCcCcHHHHHHHHHHHHhh--CCCCeEEEEcCC--CCCHHHHHhhcCCcccEEEEecCCCcccC-----
Confidence            3 389999999999985  56788888 66  788888875544  34556777776656789999998876643     


Q ss_pred             ccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          140 DFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       140 g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      +..-+ .++..++++.++.+.++++.+|..++++.
T Consensus       152 ~~vEv-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~  185 (291)
T PRK06035        152 KLIEV-VRAALTSEETFNTTVELSKKIGKIPIEVA  185 (291)
T ss_pred             ccEEE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence            11222 34455688899999999999999998884

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.62  E-value=1.1e-13  Score=126.99  Aligned_cols=231  Identities=12%  Similarity=0.025  Sum_probs=137.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE--ecChHHHh--------------ccCCCEEEE
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF--FSDKRAFL--------------EADNDVILI   73 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~--~~~~~~~~--------------~~~aD~iil   73 (275)
                      .+|||+|||+|.||.++|..|+++||+|++||++++.....+.|...  ...+++.+              .+++|+||+
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii   81 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI   81 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence            35899999999999999999999999999999998643333322210  01111110              147999999


Q ss_pred             ecCc----------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-C-------------CceeecCCC
Q 023897           74 STSI----------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-E-------------MDVLCTHPM  128 (275)
Q Consensus        74 avp~----------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~-------------~~~v~~hP~  128 (275)
                      |||+          ..+.++++.+ +.  +++|+++++.+++.....+.+...+.. +             ...+...|-
T Consensus        82 ~vptp~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE  159 (415)
T PRK11064         82 AVPTPFKGDHEPDLTYVEAAAKSIAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE  159 (415)
T ss_pred             EcCCCCCCCCCcChHHHHHHHHHHHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence            9998          4777888888 77  889999999888776655555432211 0             012233341


Q ss_pred             C---CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH-------HHh-
Q 023897          129 F---GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR-------VLS-  197 (275)
Q Consensus       129 ~---g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~-------~l~-  197 (275)
                      +   |...  ..+ +.+..++.+  .+++..++++++++.++..++.++.-+...++.++.+.-..+-.       .++ 
T Consensus       160 ~~~~G~~~--~~~-~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae  234 (415)
T PRK11064        160 RVLPGQVM--VEL-IKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICA  234 (415)
T ss_pred             ccCCCChh--hhh-cCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   1111  011 223333432  26778899999999998776666655666666666543322111       122 


Q ss_pred             hccccc------------Ccc--cCcch------HHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHHHHH
Q 023897          198 ELEIQS------------TSM--NTKGF------ETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLDLEA  248 (275)
Q Consensus       198 ~~~~~~------------~~l--~~~~~------~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~~~~  248 (275)
                      ..|.|.            -.+  .+.||      +|..-|.... +.++.+|.....-|..-. ...+.+.+
T Consensus       235 ~~GiD~~~v~~~~~~~~ri~~l~pG~G~GG~ClpkD~~~L~~~~-~~~~~l~~~a~~~N~~~~~~v~~~~~~  305 (415)
T PRK11064        235 DQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQN-PQQARLIRTAREVNDGKPHWVIDQVKA  305 (415)
T ss_pred             HhCCCHHHHHHHhccCCCcccCCCCCCCCCccccccHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHHH
Confidence            134431            011  12222      4555554433 556888888888886554 34444443

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.62  E-value=7.4e-14  Score=120.71  Aligned_cols=172  Identities=16%  Similarity=0.248  Sum_probs=126.9

Q ss_pred             CeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecChHHHhc
Q 023897           12 LKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDKRAFLE   65 (275)
Q Consensus        12 ~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~~~~~~   65 (275)
                      |||.|.|+|+-                    |+.||+.|.++||+|++|||++. .     ....+.|+..++++.++ +
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEA-A   79 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEA-A   79 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHH-H
Confidence            78999999985                    88999999999999999999864 2     23566789888888886 5


Q ss_pred             cCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhC---CCCCceeecCCCCCCCCCcCCcc
Q 023897           66 ADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVL---PEEMDVLCTHPMFGPESGQNGWK  139 (275)
Q Consensus        66 ~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l---~~~~~~v~~hP~~g~~~~~~~~~  139 (275)
                      +++|+||+|+|... +.+++..+ +.  +++|++++|++++...... .+++.+   +.++.+.+.||-.-|+...   +
T Consensus        80 a~ADVVIL~LPd~aaV~eVl~GLaa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~---~  154 (341)
T TIGR01724        80 KHGEIHVLFTPFGKGTFSIARTIIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQ---H  154 (341)
T ss_pred             hCCCEEEEecCCHHHHHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCC---C
Confidence            89999999999875 56888777 66  8899999999988765443 344422   3457788999987776432   1


Q ss_pred             ccceeeee-----eecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHH
Q 023897          140 DFAFVYEK-----VRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH  190 (275)
Q Consensus       140 g~~~~~~~-----~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~  190 (275)
                      + .+++.+     ..-.+++.++++.++.++.|..+|.++++-..-+.-..+.++.
T Consensus       155 ~-~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta  209 (341)
T TIGR01724       155 G-HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA  209 (341)
T ss_pred             c-eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH
Confidence            1 122221     1124788999999999999999999987543333334444443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.61  E-value=2.8e-14  Score=116.38  Aligned_cols=149  Identities=18%  Similarity=0.169  Sum_probs=105.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------Hc-------------CceEecChHHHhccC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RS-------------GISFFSDKRAFLEAD   67 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~-------------g~~~~~~~~~~~~~~   67 (275)
                      ||+|||+|.||..+|..++.+|++|.+||++++ ...+.           +.             .++++++++++  .+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--~~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--VD   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG--CT
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH--hh
Confidence            799999999999999999999999999999984 22111           11             23678899885  49


Q ss_pred             CCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897           68 NDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV  144 (275)
Q Consensus        68 aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~  144 (275)
                      +|+||-|+|.+.  -.+++.++ ..  +++++++...+|.-  ....+.+.++...++++.|+..++...      ...=
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~--~~~~~ilasnTSsl--~i~~la~~~~~p~R~ig~Hf~~P~~~~------~lVE  148 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEI--CPPDTILASNTSSL--SISELAAALSRPERFIGMHFFNPPHLM------PLVE  148 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCC--S-TTSEEEE--SSS---HHHHHTTSSTGGGEEEEEE-SSTTT--------EEE
T ss_pred             hheehhhccccHHHHHHHHHHHHHH--hCCCceEEecCCCC--CHHHHHhccCcCceEEEEecccccccC------ceEE
Confidence            999999999864  35788888 66  78999998766643  346677777666789999998766532      2233


Q ss_pred             eeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          145 YEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      +++...++++.++++.++++.+|..++.+
T Consensus       149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~v  177 (180)
T PF02737_consen  149 VVPGPKTSPETVDRVRALLRSLGKTPVVV  177 (180)
T ss_dssp             EEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            34455678899999999999999988876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.60  E-value=4e-14  Score=119.21  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=112.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHH-------cCc--e-EecChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHR-------SGI--S-FFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~-------~g~--~-~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+||| +|+||++++..|.++|++|++++|+++. . .+.+       .|+  . ...+..++ +.++|+||+|||++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~aDvVilavp~~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKRADVVILAVPWD   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH-HhcCCEEEEECCHH
Confidence            6899997 8999999999999999999999999843 2 1111       122  1 12355554 48999999999999


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeCCCCCh---------------hHHHHHHhhCCCCCceeecCCCCCCCCCcC-C-ccc
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADVLSVKE---------------YPRNVLLQVLPEEMDVLCTHPMFGPESGQN-G-WKD  140 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~---------------~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~-~-~~g  140 (275)
                      .+.++++++ +.  +. +++++|++.--.               ...+.+++.++.+.++|...|+.+...... . ..+
T Consensus        80 ~~~~~l~~l~~~--l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~  156 (219)
T TIGR01915        80 HVLKTLESLRDE--LS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVD  156 (219)
T ss_pred             HHHHHHHHHHHh--cc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCC
Confidence            999999888 54  54 478888753211               112567777775478888888655442111 1 112


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHc-CCeEEEcChhHHHH
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESE-GCKMLEMSCEEHDK  180 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~-G~~v~~~~~~~hD~  180 (275)
                      ...+++   +.++++.+.+.+|.+.+ |++++...+-.+.+
T Consensus       157 ~~~~v~---Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~  194 (219)
T TIGR01915       157 CDVLVC---GDDEEAKEVVAELAGRIDGLRALDAGPLENAA  194 (219)
T ss_pred             CCEEEE---CCCHHHHHHHHHHHHhcCCCCcccCCchhhHH
Confidence            333333   33667788899999999 99998887654443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.58  E-value=5.5e-14  Score=114.79  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=107.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hh--hHHHHcCceE-ecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HS--QLCHRSGISF-FSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~--~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ||+|+|+|+|+||+++|++|.+.||+|++.+|+. +.  ..+...+..+ ..+++++ ++.+|+||++||...+.+++.+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA-~~~aDVVvLAVP~~a~~~v~~~   79 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDA-AALADVVVLAVPFEAIPDVLAE   79 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHH-HhcCCEEEEeccHHHHHhHHHH
Confidence            5899999999999999999999999999886655 32  2333444321 2345554 4789999999999999999999


Q ss_pred             C-CCCCCCCCcEEEeCCCC---------------ChhHHHHHHhhCCCCCceeec-CCCCCCCCCcCCcc-ccceeeeee
Q 023897           87 L-PVHCLQRRTLIADVLSV---------------KEYPRNVLLQVLPEEMDVLCT-HPMFGPESGQNGWK-DFAFVYEKV  148 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~---------------k~~~~~~l~~~l~~~~~~v~~-hP~~g~~~~~~~~~-g~~~~~~~~  148 (275)
                      + ..  + .|+|++|++.-               .....+.+++.++.. ++|.. |-++.......... +...++.  
T Consensus        80 l~~~--~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~v--  153 (211)
T COG2085          80 LRDA--L-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLV--  153 (211)
T ss_pred             HHHH--h-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEE--
Confidence            9 53  3 48999998753               122355667777643 44432 32222211111111 2223332  


Q ss_pred             ecCChHHHHHHHHHHHHcCCeEEEcChhH
Q 023897          149 RIRDEATCSSFLRIFESEGCKMLEMSCEE  177 (275)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~  177 (275)
                      .++|.++.+.+.+|.+.+|++++...+-+
T Consensus       154 agDD~~Ak~~v~~L~~~iG~~~ld~G~L~  182 (211)
T COG2085         154 AGDDAEAKAVVAELAEDIGFRPLDAGPLE  182 (211)
T ss_pred             ecCcHHHHHHHHHHHHhcCcceeeccccc
Confidence            24477888999999999999998876543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.57  E-value=4.1e-13  Score=120.40  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=108.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-----------------EecChHHHhccCCCEEEE
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-----------------FFSDKRAFLEADNDVILI   73 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-----------------~~~~~~~~~~~~aD~iil   73 (275)
                      +|||+|||+|.||+++|..|.++|++|++|+|++..+...+.|..                 .+++. +. ...+|+||+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~D~vil   79 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AA-LATADLVLV   79 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hh-ccCCCEEEE
Confidence            479999999999999999999999999999997643333333432                 23444 33 378999999


Q ss_pred             ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeec-CCC----CCCCCCcCCccccceeeee
Q 023897           74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCT-HPM----FGPESGQNGWKDFAFVYEK  147 (275)
Q Consensus        74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~-hP~----~g~~~~~~~~~g~~~~~~~  147 (275)
                      |||.....++++.+ +.  +.++++++++.+... ..+.+++.++.. .++.+ +|.    .||........+. ..+. 
T Consensus        80 ~vk~~~~~~~~~~l~~~--~~~~~iii~~~nG~~-~~~~l~~~~~~~-~~~~g~~~~~~~~~~pg~~~~~~~g~-l~~~-  153 (341)
T PRK08229         80 TVKSAATADAAAALAGH--ARPGAVVVSFQNGVR-NADVLRAALPGA-TVLAGMVPFNVISRGPGAFHQGTSGA-LAIE-  153 (341)
T ss_pred             EecCcchHHHHHHHHhh--CCCCCEEEEeCCCCC-cHHHHHHhCCCC-cEEEEEEEEEEEecCCceEEecCCCc-eEec-
Confidence            99999999999998 76  788888887654222 235566666542 33332 331    1222111111222 2211 


Q ss_pred             eecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh
Q 023897          148 VRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS  185 (275)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~  185 (275)
                          +.+..+++.++|+..|.+++..+.-.......++
T Consensus       154 ----~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~  187 (341)
T PRK08229        154 ----ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLL  187 (341)
T ss_pred             ----CCchHHHHHHHHHhcCCCceecchhHHHHHHHHH
Confidence                2245688999999999998887755555555554

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.56  E-value=2.4e-15  Score=114.92  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChh-hhH-HHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDH-SQL-CHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~-~~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ....+||+|||+|++|..|+++|.++||.|.+ |+|++. .+. +...+.....++.+. ..++|++|++||++.+.++.
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~-~~~aDlv~iavpDdaI~~va   85 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEI-LRDADLVFIAVPDDAIAEVA   85 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGG-GCC-SEEEE-S-CCHHHHHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccc-cccCCEEEEEechHHHHHHH
Confidence            34678999999999999999999999999886 578773 332 333344444566664 58999999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCCh-hHHHHHHhhCCCCCceeecCC
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKE-YPRNVLLQVLPEEMDVLCTHP  127 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~-~~~~~l~~~l~~~~~~v~~hP  127 (275)
                      +++ ....+.++++++.+++... .+++-+++   .++...+.||
T Consensus        86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~---~Ga~~~s~HP  127 (127)
T PF10727_consen   86 EQLAQYGAWRPGQIVVHTSGALGSDVLAPARE---RGAIVASLHP  127 (127)
T ss_dssp             HHHHCC--S-TT-EEEES-SS--GGGGHHHHH---TT-EEEEEEE
T ss_pred             HHHHHhccCCCCcEEEECCCCChHHhhhhHHH---CCCeEEEeCc
Confidence            999 4322578999999886543 33333333   4567778887

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.55  E-value=4e-13  Score=117.46  Aligned_cols=152  Identities=16%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLE   65 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~   65 (275)
                      ..||+|||+|.||..+|..++.+|++|++||++++ .+.           ..+.|             ++.+++.++  +
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--~   82 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD--F   82 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH--h
Confidence            35899999999999999999999999999999985 222           12222             236777755  3


Q ss_pred             cCCCEEEEecCchh-H-HHHhhcC-CCCCC-CCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           66 ADNDVILISTSILS-L-SEVLNSL-PVHCL-QRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        66 ~~aD~iilavp~~~-~-~~v~~~l-~~~~l-~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++|+||-|+|.+. + .+++..+ ..  + ++++++.+.+|...  ...+........++++.|+..++...     +.
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~--~~~~~~il~snTS~~~--~~~la~~~~~~~r~~g~hf~~P~~~~-----~l  153 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKV--VTDPDAVLASNTSSIP--IMKLAAATKRPGRVLGLHFFNPVPVL-----PL  153 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHh--hCCCCcEEEECCCCCC--HHHHHhhcCCCccEEEEecCCCcccC-----ce
Confidence            89999999999974 2 4566666 54  6 78999988776543  34455555555689999998766542     22


Q ss_pred             ceeeeeeecCChHHHHHHHHHHH-HcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFE-SEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~-~~G~~v~~~~  174 (275)
                      .- +++...++++.++++..++. .+|..++.+.
T Consensus       154 vE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~  186 (286)
T PRK07819        154 VE-LVPTLVTSEATVARAEEFASDVLGKQVVRAQ  186 (286)
T ss_pred             EE-EeCCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence            22 33344568899999999988 5998888773

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.55  E-value=1.6e-13  Score=122.38  Aligned_cols=203  Identities=19%  Similarity=0.287  Sum_probs=127.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-------c-------CceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-------S-------GISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-------~-------g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.||+++|..|.++|++|++|+|+++ .+...+       .       ++..+++..+.+...+|+||+|||
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            6899999999999999999999999999999874 221111       0       123455666642257899999999


Q ss_pred             chhHHHHhhcC-C-CCCCCCCcEEEeC-CCCCh----hHHHHHHhhCCCCCceeecCC---CCCCCCCcCCccccceeee
Q 023897           77 ILSLSEVLNSL-P-VHCLQRRTLIADV-LSVKE----YPRNVLLQVLPEEMDVLCTHP---MFGPESGQNGWKDFAFVYE  146 (275)
Q Consensus        77 ~~~~~~v~~~l-~-~~~l~~~~iv~d~-~s~k~----~~~~~l~~~l~~~~~~v~~hP---~~g~~~~~~~~~g~~~~~~  146 (275)
                      ++.+.++++++ + .  +.+++.++.+ .+...    ...+.+.+.++       .||   +.||....+...+.+..+.
T Consensus        81 s~~~~~~l~~l~~~~--l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~-------~~~~~~~~Gp~~a~~~~~~~~~~~~  151 (326)
T PRK14620         81 TQQLRTICQQLQDCH--LKKNTPILICSKGIEKSSLKFPSEIVNEILP-------NNPIAILSGPSFAKEIAEKLPCSIV  151 (326)
T ss_pred             HHHHHHHHHHHHHhc--CCCCCEEEEEEcCeeCCCCccHHHHHHHHcC-------CCceEeecCCcHHHHHHcCCCcEEE
Confidence            99999999999 7 6  7766644432 22211    11244454443       233   2366543223333443322


Q ss_pred             eeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHhh---cccc--c-CcccCcchHHHHHHhh
Q 023897          147 KVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLSE---LEIQ--S-TSMNTKGFETLIRLKE  219 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~~---~~~~--~-~~l~~~~~~~~~rl~~  219 (275)
                      . .+.+.+..+.+.++|+..+++++..+    |...... ..+.++++.++.-   .+..  . ..+...+++++.+++.
T Consensus       152 ~-~~~~~~~~~~l~~~l~~~~~~~~~~~----Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~  226 (326)
T PRK14620        152 L-AGQNETLGSSLISKLSNENLKIIYSQ----DIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYS  226 (326)
T ss_pred             E-ecCCHHHHHHHHHHHCCCCeEEEecC----cchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            2 23355566788888988888887765    4333322 3455555443331   1222  1 3577888999999998


Q ss_pred             cCCCC--ChhhH
Q 023897          220 SSVND--SFDLF  229 (275)
Q Consensus       220 ~~~~~--~p~~~  229 (275)
                      .. +.  +|+.+
T Consensus       227 a~-G~~~~~~~~  237 (326)
T PRK14620        227 AK-NGSIDLNTL  237 (326)
T ss_pred             Hh-CCCCCcchh
Confidence            75 43  57766

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.54  E-value=2.9e-13  Score=126.98  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=113.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g-------------~~~~~~~~~~~   64 (275)
                      ...+|+|||+|.||..||..|+.+|++|++||++++ .+.+           .+.|             ++.+++++++ 
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-   84 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-   84 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence            456899999999999999999999999999999985 3321           2344             4677788763 


Q ss_pred             ccCCCEEEEecCchh-H-HHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           65 EADNDVILISTSILS-L-SEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        65 ~~~aD~iilavp~~~-~-~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                       .+||+||.|+|.+. + ..++.++ ..  +++++++. ++++...   ..+.+.+....++++.|...++...      
T Consensus        85 -~~aDlViEav~E~~~vK~~vf~~l~~~--~~~~ailasntStl~i---~~la~~~~~p~r~~G~hff~Pa~v~------  152 (507)
T PRK08268         85 -ADCDLVVEAIVERLDVKQALFAQLEAI--VSPDCILATNTSSLSI---TAIAAALKHPERVAGLHFFNPVPLM------  152 (507)
T ss_pred             -CCCCEEEEcCcccHHHHHHHHHHHHhh--CCCCcEEEECCCCCCH---HHHHhhcCCcccEEEEeecCCcccC------
Confidence             69999999999974 3 3455666 55  67888884 6665543   3556555555679999987655432      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..+.++++..++++.++.+.++++.+|..++++.
T Consensus       153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~  186 (507)
T PRK08268        153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAK  186 (507)
T ss_pred             eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence            2355555555688899999999999999988875

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.54  E-value=2.6e-14  Score=114.12  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=90.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH--------------cCceEecChHHHhccCCCEEEEecCc
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR--------------SGISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~--------------~g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      ||+|||+|+||.++|..|+++|++|++|+|+++ .+...+              ..+.++++++++ ++++|+|+++||.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a-~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA-LEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH-HTT-SEEEE-S-G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH-hCcccEEEecccH
Confidence            799999999999999999999999999999974 221111              123578889886 5899999999999


Q ss_pred             hhHHHHhhcC-CCCCCCCCcEEEeCC-CC----ChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee
Q 023897           78 LSLSEVLNSL-PVHCLQRRTLIADVL-SV----KEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV  148 (275)
Q Consensus        78 ~~~~~v~~~l-~~~~l~~~~iv~d~~-s~----k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~  148 (275)
                      +..+++++++ ++  ++++++++.+. +.    ...+.+.+++.++... +.   -+.||..+.|...+.++.++-.
T Consensus        80 ~~~~~~~~~l~~~--l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~-~~---~lsGP~~A~Ei~~~~pt~~~~a  150 (157)
T PF01210_consen   80 QAHREVLEQLAPY--LKKGQIIISATKGFEPGTLLLLSEVIEEILPIPR-IA---VLSGPSFAEEIAEGKPTAVVIA  150 (157)
T ss_dssp             GGHHHHHHHHTTT--SHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCG-EE---EEESS--HHHHHTT--EEEEEE
T ss_pred             HHHHHHHHHHhhc--cCCCCEEEEecCCcccCCCccHHHHHHHHhhhcc-eE---EeeCccHHHHHHcCCCeEEEEE
Confidence            9999999999 88  88888887654 11    1235566777766432 22   2468887777777877766643

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.51  E-value=3.7e-14  Score=103.66  Aligned_cols=87  Identities=30%  Similarity=0.533  Sum_probs=71.5

Q ss_pred             eEEEEcCChHHHHHHHHHHHCC---CeEEE-EcCChhh--hHHHHcCceEec-ChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQG---HILRA-TSRTDHS--QLCHRSGISFFS-DKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g---~~V~~-~dr~~~~--~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ||+|||+|+||.++++.|.+.|   ++|.+ ++|+++.  +.+.+.++.... +..++ ++++|+||+|||++.+.+++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEA-AQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHH-HHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHh-hccCCEEEEEECHHHHHHHHH
Confidence            7999999999999999999999   89995 4999963  456777876665 77775 589999999999999999999


Q ss_pred             cCCCCCCCCCcEEEeCC
Q 023897           86 SLPVHCLQRRTLIADVL  102 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~  102 (275)
                      +++.  ..++++++|+.
T Consensus        80 ~i~~--~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPH--LLKGKLVISIA   94 (96)
T ss_dssp             HHHH--HHTTSEEEEES
T ss_pred             HHhh--ccCCCEEEEeC
Confidence            9833  56788998875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.49  E-value=1.3e-12  Score=122.39  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=111.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC-------------ceEecChHHHhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG-------------ISFFSDKRAFLE   65 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g-------------~~~~~~~~~~~~   65 (275)
                      ..||+|||+|.||..||..|+++|++|++||++++ .+.+           .+.|             ++.+++++++  
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l--   82 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL--   82 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh--
Confidence            46899999999999999999999999999999985 3221           2233             3567788763  


Q ss_pred             cCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897           66 ADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA  142 (275)
Q Consensus        66 ~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~  142 (275)
                      .+||+||.|+|.+.  -..++.++ ..  +++++++...+|.-. + ..+.+.+....++++.|...++...      ..
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~--~~~~~IlasnTStl~-i-~~iA~~~~~p~r~~G~HFf~Papv~------~L  152 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEEL--CPADTIIASNTSSLS-I-TAIAAGLARPERVAGLHFFNPAPVM------AL  152 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhh--CCCCeEEEECCCCCC-H-HHHHHhcCcccceEEEeccCccccC------ce
Confidence            69999999999853  34566667 55  778888764444332 2 3455555555689999987655532      23


Q ss_pred             eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..++++..++++.++.+.++++.+|..++++.
T Consensus       153 vEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~  184 (503)
T TIGR02279       153 VEVVSGLATAAEVAEQLYETALAWGKQPVHCH  184 (503)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence            55555556688999999999999999988875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.48  E-value=2.6e-12  Score=118.08  Aligned_cols=167  Identities=14%  Similarity=0.107  Sum_probs=104.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCc-----------------eEecChHHHhccCCCEEEEe
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGI-----------------SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~-----------------~~~~~~~~~~~~~aD~iila   74 (275)
                      |||+|||+|.||..+|..|++ ||+|++||++++.....+.|.                 ..+++.+ + ++++|++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~-~-~~~advvii~   83 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIE-K-IKECNFYIIT   83 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHH-H-HcCCCEEEEE
Confidence            899999999999999999887 599999999986432222333                 3444444 3 4899999999


Q ss_pred             cCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHH-HhhCCC--C-----CceeecCCCCCCCCC-
Q 023897           75 TSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVL-LQVLPE--E-----MDVLCTHPMFGPESG-  134 (275)
Q Consensus        75 vp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l-~~~l~~--~-----~~~v~~hP~~g~~~~-  134 (275)
                      ||..          .+....+.+ +.  +++|+++++.+++.....+.+ ...+..  +     ..+++..|.+..+-. 
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a  161 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK  161 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence            9975          345555677 66  888999999888876554432 222211  1     123444454333211 


Q ss_pred             cCCccccceeeeeeecCChHHHHHHHHHHHHcC-CeEEEcChhHHHHHHHHhh
Q 023897          135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG-CKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~v~~~~~~~hD~~~a~~~  186 (275)
                      ...+...+.++.+   .+++..+.++++++.+. ..++.++.-+-..++.++.
T Consensus       162 ~~~~~~~~riv~G---~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~  211 (425)
T PRK15182        162 KHRLTNIKKITSG---STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE  211 (425)
T ss_pred             cccccCCCeEEEC---CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH
Confidence            1112233344442   25667788999999875 2244444344455666554

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.42  E-value=4.1e-12  Score=117.33  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cCceEecChHHHhcc---CCCEEEEecCch-hHHHHhhcC-CCC
Q 023897           22 FGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SGISFFSDKRAFLEA---DNDVILISTSIL-SLSEVLNSL-PVH   90 (275)
Q Consensus        22 mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g~~~~~~~~~~~~~---~aD~iilavp~~-~~~~v~~~l-~~~   90 (275)
                      ||+.||+.|.++||+|.+|||+++ .+...+     .|+....++++++ +   .+|+||+++|.. .+.++++.+ +. 
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v-~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~-   78 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFV-ASLEKPRKILLMVKAGAPVDAVIEQLLPL-   78 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHH-hhCCCCCEEEEECCCchHHHHHHHHHHhc-
Confidence            899999999999999999999985 333333     2477888999863 4   489999999986 567888888 87 


Q ss_pred             CCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCe
Q 023897           91 CLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCK  169 (275)
Q Consensus        91 ~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  169 (275)
                       +.+|.+++|.+++.........+.+ ..+..|++ .|++|.+.+.  ..|. .++.++   +++.+++++.+|+.++.+
T Consensus        79 -l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd-apVSGG~~gA--~~G~-siM~GG---~~~a~~~~~piL~~ia~~  150 (459)
T PRK09287         79 -LEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG-MGVSGGEEGA--LHGP-SIMPGG---QKEAYELVAPILEKIAAK  150 (459)
T ss_pred             -CCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe-cCCCCCHHHH--hcCC-EEEEeC---CHHHHHHHHHHHHHHhhh
Confidence             8999999999876655444444443 45678887 5888876432  2454 666543   788999999999999988


Q ss_pred             E-------EEcChhHHHHHHHHhhhhH
Q 023897          170 M-------LEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       170 v-------~~~~~~~hD~~~a~~~~lp  189 (275)
                      +       .++.+.....++.+++++-
T Consensus       151 ~~~g~~c~~~vG~~GaGh~vKmvhN~i  177 (459)
T PRK09287        151 VEDGEPCVTYIGPDGAGHYVKMVHNGI  177 (459)
T ss_pred             hcCCCCceeeeCCCCHHHHHHHHHHHH
Confidence            6       7888777677777775443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.42  E-value=4.7e-11  Score=105.90  Aligned_cols=231  Identities=14%  Similarity=0.113  Sum_probs=133.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce--------------EecChHHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS--------------FFSDKRAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~--------------~~~~~~~~~~~~aD~iil   73 (275)
                      .+..|||+|||+|.||+.+|..|+++|++|+++.|++. +...+.|..              ..++.++  ...+|+||+
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vil   78 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED--MPPCDWVLV   78 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh--cCCCCEEEE
Confidence            34568999999999999999999999999999999863 212222321              2233333  267899999


Q ss_pred             ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC-----ccccceeeee
Q 023897           74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG-----WKDFAFVYEK  147 (275)
Q Consensus        74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~-----~~g~~~~~~~  147 (275)
                      |||...+.++++.+ +.  +.++++++...+--. ..+.+.+.++.. +++.+-...|....+++     ..|. ..+..
T Consensus        79 avK~~~~~~~~~~l~~~--~~~~~~iv~lqNG~~-~~e~l~~~~~~~-~v~~g~~~~~a~~~~pg~v~~~~~g~-~~iG~  153 (313)
T PRK06249         79 GLKTTANALLAPLIPQV--AAPDAKVLLLQNGLG-VEEQLREILPAE-HLLGGLCFICSNRVGPGVIHHLAYGR-VNLGY  153 (313)
T ss_pred             EecCCChHhHHHHHhhh--cCCCCEEEEecCCCC-cHHHHHHHCCCC-cEEEEeeeEeEecCCCeEEEECCCCc-EEEec
Confidence            99999999999988 76  777776665543222 345667777643 34433222222111100     0122 22222


Q ss_pred             eecCC-----hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhh-----hHHHH----------------HHHHhh---
Q 023897          148 VRIRD-----EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQF-----LTHTI----------------GRVLSE---  198 (275)
Q Consensus       148 ~~~~~-----~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~-----lp~~~----------------a~~l~~---  198 (275)
                      ..+.+     .+..+.+.++|+..|..+...+.-++.....++-.     +..++                ...+.+   
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~  233 (313)
T PRK06249        154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI  233 (313)
T ss_pred             CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence            22212     34566788899999988766654455554443321     11111                001110   


Q ss_pred             -----cccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHHH
Q 023897          199 -----LEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAA  249 (275)
Q Consensus       199 -----~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~~  249 (275)
                           .|.+   +...-++...+++.......+.||+|+...-++.++.+.-+.-.
T Consensus       234 ~va~a~Gi~---~~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i~G~vv~  286 (313)
T PRK06249        234 QGAAACGHT---LPEGYADHMLAVTERMPDYRPSMYHDFEEGRPLELEAIYANPLA  286 (313)
T ss_pred             HHHHhcCCC---CChhHHHHHHHHhhcCCCCCChHHHHHHCCCcccHHHHhhHHHH
Confidence                 1211   22223455566666654456899999986555556666555443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.41  E-value=2.3e-11  Score=107.34  Aligned_cols=155  Identities=12%  Similarity=0.222  Sum_probs=96.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-------------EecChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-------------FFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-------------~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+|||+|.||+.+|..|+++|++|++++|.+..+...+.|+.             ..++.++. ...+|+||+|||..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEEL-TGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHc-cCCCCEEEEEeccc
Confidence            68999999999999999999999999999993233333333432             23345553 37899999999999


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCC-----CCCCCCCcCCccccc-eeeeeeec
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHP-----MFGPESGQNGWKDFA-FVYEKVRI  150 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP-----~~g~~~~~~~~~g~~-~~~~~~~~  150 (275)
                      .+.++++.+ +.  +.++++++.+. ++  ...+.+.+.++.. +++++-.     ..++..-.  ..+.. +.+.....
T Consensus        80 ~~~~~~~~l~~~--~~~~~~ii~~~nG~--~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~--~~~~~~~~iG~~~~  152 (305)
T PRK12921         80 QLDAAIPDLKPL--VGEDTVIIPLQNGI--GQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVV--QRADHRLTFGEIPG  152 (305)
T ss_pred             CHHHHHHHHHhh--cCCCCEEEEeeCCC--ChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEE--EcCCCcEEEcCCCC
Confidence            999999999 76  77777776543 32  2235566666532 2332211     11221100  01111 22211112


Q ss_pred             CChHHHHHHHHHHHHcCCeEEEcC
Q 023897          151 RDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ...+..+.+.++|...|..+...+
T Consensus       153 ~~~~~~~~l~~~l~~~g~~~~~~~  176 (305)
T PRK12921        153 QRSERTRAVRDALAGARLEVVLSE  176 (305)
T ss_pred             CcCHHHHHHHHHHHhCCCCceecH
Confidence            224466788889999997765543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=8e-12  Score=103.10  Aligned_cols=166  Identities=14%  Similarity=0.166  Sum_probs=117.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHh--ccCCCEEEEecCch-hHHHHhhcC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFL--EADNDVILISTSIL-SLSEVLNSL   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~-~~~~v~~~l   87 (275)
                      |+|+.||+|+||..++++|.+.||+|++||+|+. .+.+...|++..+++++.+  +...-.|-+.||.. .+.++++++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l   80 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL   80 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence            6899999999999999999999999999999995 5777788888888877653  24568899999987 778999999


Q ss_pred             -CCCCCCCCcEEEeCCCCCh-hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           88 -PVHCLQRRTLIADVLSVKE-YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~-~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                       +.  +.+|.+|+|-+++.- +......+....+..|+.+-.--|.. +.  ..|. .++++   .+++++++++.+|+.
T Consensus        81 a~~--L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~-G~--~~G~-~lMiG---G~~~a~~~~~pif~~  151 (300)
T COG1023          81 APL--LSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVW-GA--ERGY-CLMIG---GDEEAVERLEPIFKA  151 (300)
T ss_pred             Hhh--cCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCch-hh--hcCc-eEEec---CcHHHHHHHHHHHHh
Confidence             88  999999999876543 22233333334567887653222221 11  1233 34443   278899999999998


Q ss_pred             cCC---eEEEcChhHHHHHHHHhh
Q 023897          166 EGC---KMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       166 ~G~---~v~~~~~~~hD~~~a~~~  186 (275)
                      +-.   -..++.|.....+...+.
T Consensus       152 lA~ge~Gyl~~Gp~GsGHfvKMVH  175 (300)
T COG1023         152 LAPGEDGYLYCGPSGSGHFVKMVH  175 (300)
T ss_pred             hCcCcCccccccCCCcchhHHHHh
Confidence            754   134555554444445544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.40  E-value=1.6e-11  Score=108.27  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=95.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce-----------EecChHHHhccCCCEEEEecCchh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS-----------FFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~-----------~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      |||+|||+|.||+.+|..|.+.|++|++++|+++ .+...+.|..           ..++..+ + ..+|+||+|||...
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~d~vila~k~~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-L-GPQDLVILAVKAYQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-c-CCCCEEEEeccccc
Confidence            6899999999999999999999999999999764 3333333442           2344555 3 78999999999999


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCC-----CCCCCCcCCccccceeeeeeecCCh
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM-----FGPESGQNGWKDFAFVYEKVRIRDE  153 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~-----~g~~~~~~~~~g~~~~~~~~~~~~~  153 (275)
                      +.++++.+ +.  +.++++++.+.+-.. ..+.+.+.++.. .++.+-..     .+|........+. ..+..... ..
T Consensus        79 ~~~~~~~l~~~--l~~~~~iv~~~nG~~-~~~~l~~~~~~~-~i~~~~~~~~~~~~~p~~v~~~~~g~-~~ig~~~~-~~  152 (304)
T PRK06522         79 LPAALPSLAPL--LGPDTPVLFLQNGVG-HLEELAAYIGPE-RVLGGVVTHAAELEGPGVVRHTGGGR-LKIGEPDG-ES  152 (304)
T ss_pred             HHHHHHHHhhh--cCCCCEEEEecCCCC-cHHHHHHhcCcc-cEEEEEEEEeeEecCCCEEEEcCCCC-EEEeCCCC-Cc
Confidence            99999999 76  777776665443222 234556655432 23321111     1221100001122 22221111 22


Q ss_pred             HHHHHHHHHHHHcCCeEEEc
Q 023897          154 ATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       154 ~~~~~~~~l~~~~G~~v~~~  173 (275)
                      +..+.+.++|...|..+...
T Consensus       153 ~~~~~l~~~l~~~~~~~~~~  172 (304)
T PRK06522        153 AAAEALADLLNAAGLDVEWS  172 (304)
T ss_pred             HHHHHHHHHHHhcCCCCCCC
Confidence            34677888999988775554

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.39  E-value=2.5e-11  Score=110.28  Aligned_cols=165  Identities=13%  Similarity=0.067  Sum_probs=104.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----------------cCc--eEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----------------SGI--SFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----------------~g~--~~~~~~~~~~~~~aD~ii   72 (275)
                      |||+|||+|.||..+|..|+. ||+|++||++++. +...+                .+.  ..+.+..++ +.++|+||
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-~~~ad~vi   78 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-YRDADYVI   78 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-hcCCCEEE
Confidence            689999999999999988875 8999999999853 32221                122  233445564 48999999


Q ss_pred             EecCch-----------hHHHHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCC-CCcCCccc
Q 023897           73 ISTSIL-----------SLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPE-SGQNGWKD  140 (275)
Q Consensus        73 lavp~~-----------~~~~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~-~~~~~~~g  140 (275)
                      +|||..           .+.++++.+..  +++++++++.+++.....+.+.+.+..  ..+...|.+-.+ ..-..+..
T Consensus        79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~--~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~~PE~l~~G~a~~d~~~  154 (388)
T PRK15057         79 IATPTDYDPKTNYFNTSSVESVIKDVVE--INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIFSPEFLREGKALYDNLH  154 (388)
T ss_pred             EeCCCCCccCCCCcChHHHHHHHHHHHh--cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEECcccccCCcccccccC
Confidence            999965           45677777732  578899999998887777777765432  123333432221 11122334


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHH--cCCeEE--EcChhHHHHHHHHhh
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFES--EGCKML--EMSCEEHDKVAAKSQ  186 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~--~G~~v~--~~~~~~hD~~~a~~~  186 (275)
                      .+.++.+.   +++..+.+.+++..  ++..+.  .++. +-..++.++.
T Consensus       155 p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~AE~~Kl~~  200 (388)
T PRK15057        155 PSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDS-TEAEAIKLFA  200 (388)
T ss_pred             CCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCH-HHHHHHHHHH
Confidence            44666543   34566777777754  454333  4444 3344555554

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.37  E-value=1.9e-11  Score=106.63  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=109.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-----------HHcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-----------HRSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-----------~~~g-------------~~~~~~~~~~~   64 (275)
                      ..+||+|||+|.||+.+|..++..|++|+++|++++. ..+           .+.|             ++.+++...  
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--   79 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--   79 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH--
Confidence            4579999999999999999999988999999999642 111           1112             234455554  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++||+|+-+++.+.  -.+++.++ ..  .++++|+.+.+|.-.  ...+.+.+...-+|++.|+..++..-      .
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~--~~~~aIlASNTSsl~--it~ia~~~~rper~iG~HFfNP~~~m------~  149 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEAL--AKPDAILASNTSSLS--ITELAEALKRPERFIGLHFFNPVPLM------P  149 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhh--cCCCcEEeeccCCCC--HHHHHHHhCCchhEEEEeccCCCCcc------e
Confidence            389999999999974  35788888 66  788999987665433  34555555555689999997776531      1


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEE
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLE  172 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~  172 (275)
                      ..=+.++..++++.++.+.++.+.+|..+++
T Consensus       150 LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv  180 (307)
T COG1250         150 LVEVIRGEKTSDETVERVVEFAKKIGKTPVV  180 (307)
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCCCEe
Confidence            2333444556888999999999999965533

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.37  E-value=3.5e-11  Score=117.40  Aligned_cols=152  Identities=13%  Similarity=0.073  Sum_probs=114.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFLE   65 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~~   65 (275)
                      ..||+|||+|.||..+|..++.+|++|+++|++++ .+.+           .+.             .++.+++.++ + 
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  390 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-F-  390 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-h-
Confidence            46899999999999999999999999999999974 2211           111             2356677765 3 


Q ss_pred             cCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897           66 ADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA  142 (275)
Q Consensus        66 ~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~  142 (275)
                      ++||+||-|+|.+.  -.+++.++ +.  +++++++...+|.-  ....+.+.+....+|++.|+..++..-      ..
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~--~~~~~ilasNTSsl--~i~~la~~~~~p~r~~g~Hff~P~~~~------~l  460 (715)
T PRK11730        391 ERVDVVVEAVVENPKVKAAVLAEVEQK--VREDTILASNTSTI--SISLLAKALKRPENFCGMHFFNPVHRM------PL  460 (715)
T ss_pred             cCCCEEEecccCcHHHHHHHHHHHHhh--CCCCcEEEEcCCCC--CHHHHHhhcCCCccEEEEecCCccccc------ce
Confidence            89999999999964  35788888 76  88999998766543  345566666656789999987666532      12


Q ss_pred             eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      +=++++..++++.++.+.++++.+|..++++.
T Consensus       461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~  492 (715)
T PRK11730        461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVN  492 (715)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence            33344455688899999999999999988873

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.36  E-value=4.8e-11  Score=116.18  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=114.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChh-hhHH-----------HH-------------cCceEecChHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDH-SQLC-----------HR-------------SGISFFSDKRAF   63 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~~a-----------~~-------------~g~~~~~~~~~~   63 (275)
                      ...||+|||+|.||..+|..++ .+|++|+++|++++ ...+           .+             ..++.+++.+. 
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  381 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-  381 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence            3468999999999999999998 58999999999974 2211           11             12356677765 


Q ss_pred             hccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           64 LEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        64 ~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                       +++||+||-|+|.+.  -.+++.++ ..  +++++|+...+|.-  ....+.+.+....++++.|+..++...      
T Consensus       382 -~~~adlViEav~E~l~~K~~v~~~l~~~--~~~~~ilasnTS~l--~i~~la~~~~~p~r~~g~HffnP~~~~------  450 (699)
T TIGR02440       382 -FKDVDIVIEAVFEDLALKHQMVKDIEQE--CAAHTIFASNTSSL--PIGQIAAAASRPENVIGLHYFSPVEKM------  450 (699)
T ss_pred             -hccCCEEEEeccccHHHHHHHHHHHHhh--CCCCcEEEeCCCCC--CHHHHHHhcCCcccEEEEecCCccccC------
Confidence             389999999999974  35788888 76  88999998766543  345566666656789999998776542      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..+-++++..++++.++.+.++++.+|..++++.
T Consensus       451 ~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~  484 (699)
T TIGR02440       451 PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA  484 (699)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            2233444556688999999999999999998884

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.35  E-value=2.4e-12  Score=105.31  Aligned_cols=96  Identities=22%  Similarity=0.310  Sum_probs=67.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc---------------------CceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS---------------------GISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~---------------------g~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.+|..+|..|+++||+|+++|.+++.....+.                     ....+++.+++ +.++|+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a-i~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA-IKDADV   79 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH-HHH-SE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh-hhccce
Confidence            79999999999999999999999999999999853222221                     22566777775 489999


Q ss_pred             EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH
Q 023897           71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN  110 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~  110 (275)
                      +|+|||..          .+.++++.+ +.  ++++++++--+++.....+
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~--l~~~~lvV~~STvppGtt~  128 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPV--LRPGDLVVIESTVPPGTTE  128 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHH--HCSCEEEEESSSSSTTHHH
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHH--HhhcceEEEccEEEEeeeh
Confidence            99999863          467888888 66  7889998888877766655

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.35  E-value=5.9e-11  Score=115.67  Aligned_cols=153  Identities=12%  Similarity=0.086  Sum_probs=115.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~   64 (275)
                      ...+|+|||+|.||..+|..++.+|++|+++|++++ .+.+           .+.             .++.+++.+.  
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  389 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG--  389 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH--
Confidence            446899999999999999999999999999999974 2211           111             2355667755  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++||+||-|||.+.  -.+++.++ +.  +++++|+...+|.-.  ...+.+.++...+|++.|+..++..-      .
T Consensus       390 ~~~aDlViEav~E~l~~K~~vf~~l~~~--~~~~~ilasnTS~l~--i~~ia~~~~~p~r~ig~Hff~P~~~~------~  459 (714)
T TIGR02437       390 FDNVDIVVEAVVENPKVKAAVLAEVEQH--VREDAILASNTSTIS--ISLLAKALKRPENFCGMHFFNPVHRM------P  459 (714)
T ss_pred             hcCCCEEEEcCcccHHHHHHHHHHHHhh--CCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEecCCCcccC------c
Confidence            389999999999974  35888888 76  889999987666433  45566666666789999997666532      1


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .+=++++..++++.++.+.++++.+|..++++.
T Consensus       460 lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~  492 (714)
T TIGR02437       460 LVEVIRGEKSSDETIATVVAYASKMGKTPIVVN  492 (714)
T ss_pred             eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence            233344555688999999999999999988874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=5.7e-11  Score=105.27  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc--------------------C-ceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS--------------------G-ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~--------------------g-~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.+|...+.+|++.||+|+++|.+++.....+.                    | ...+++.+++ ++++|+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a-~~~adv   79 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA-VKDADV   79 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH-HhcCCE
Confidence            79999999999999999999999999999999853222211                    1 4678888886 489999


Q ss_pred             EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCC---c-eeecCCCCCCCCC-
Q 023897           71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEM---D-VLCTHPMFGPESG-  134 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~---~-~v~~hP~~g~~~~-  134 (275)
                      +|+|||.+          .+..+++++ +.  ++..++++.-+++.....+.+++.+....   . -|...|-|-.|-. 
T Consensus        80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~--~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A  157 (414)
T COG1004          80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEI--LDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEEcCCCCCCCCCccHHHHHHHHHHHHhh--cCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence            99999873          467788888 66  66668888878777666666555432111   1 1455676655521 


Q ss_pred             cCCccccceeeeeeecCChHHHHHHHHHHHHc---CCeEEEcChhHHH
Q 023897          135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESE---GCKMLEMSCEEHD  179 (275)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~---G~~v~~~~~~~hD  179 (275)
                      -..+....-++.+..  ++.+.+.++++++..   ...++.++.++..
T Consensus       158 v~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE  203 (414)
T COG1004         158 VYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAE  203 (414)
T ss_pred             hhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHH
Confidence            122333334444332  444678888888775   7777887766544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.33  E-value=6.1e-11  Score=115.82  Aligned_cols=153  Identities=13%  Similarity=0.085  Sum_probs=115.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~   64 (275)
                      ...+|+|||+|.||+.+|..++.+|++|+++|++++ .+.+           .+.             .++.+++.+.  
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  411 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG--  411 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--
Confidence            446899999999999999999999999999999974 2211           111             2356677765  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++||+||-|||.+.  -.+++.++ ..  +++++|+...+|.-  ....+.+.+....+|++.|+..++..-      .
T Consensus       412 ~~~aDlViEAv~E~l~~K~~vf~~l~~~--~~~~~ilasNTSsl--~i~~la~~~~~p~r~ig~Hff~P~~~m------~  481 (737)
T TIGR02441       412 FKNADMVIEAVFEDLSLKHKVIKEVEAV--VPPHCIIASNTSAL--PIKDIAAVSSRPEKVIGMHYFSPVDKM------Q  481 (737)
T ss_pred             hccCCeehhhccccHHHHHHHHHHHHhh--CCCCcEEEEcCCCC--CHHHHHhhcCCccceEEEeccCCcccC------c
Confidence            389999999999974  35888888 76  88999998766543  345566666656789999997766532      1


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .+-++++..++++.++.+.++++.+|..++++.
T Consensus       482 LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~  514 (737)
T TIGR02441       482 LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVK  514 (737)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence            233344455688899999999999999888873

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.31  E-value=1.2e-10  Score=113.71  Aligned_cols=153  Identities=16%  Similarity=0.087  Sum_probs=114.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAF   63 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~   63 (275)
                      ...||+|||+|.||..+|..++ ..|++|+++|++++ ...+           .+.             .++.+++.+. 
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  386 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-  386 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence            3468999999999999999999 88999999999874 2211           111             2356677754 


Q ss_pred             hccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           64 LEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        64 ~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                       +++||+||-|+|.+.  -.+++.++ ..  +++++++...+|.-  ....+.+.+....+|++.|+..++..-      
T Consensus       387 -~~~aDlViEav~E~~~~K~~v~~~le~~--~~~~~ilasnTS~l--~i~~la~~~~~p~r~ig~Hff~P~~~~------  455 (708)
T PRK11154        387 -FKHADVVIEAVFEDLALKQQMVAEVEQN--CAPHTIFASNTSSL--PIGQIAAAAARPEQVIGLHYFSPVEKM------  455 (708)
T ss_pred             -hccCCEEeecccccHHHHHHHHHHHHhh--CCCCcEEEECCCCC--CHHHHHHhcCcccceEEEecCCccccC------
Confidence             389999999999964  35788888 76  88999998766643  345566666555789999987666532      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..+=+++++.++++.++.+.++++.+|..++++.
T Consensus       456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~  489 (708)
T PRK11154        456 PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR  489 (708)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence            2233445556789999999999999999888773

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.26  E-value=1.5e-09  Score=95.67  Aligned_cols=232  Identities=16%  Similarity=0.209  Sum_probs=137.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------------ecChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------------FSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------------~~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+|+|+|.||+.++..|.++|++|+++.|++..+...+.|+.+             ..+.+.  ...+|+||++|+..
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~--~~~~Dlviv~vKa~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEA--LGPADLVIVTVKAY   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhh--cCCCCEEEEEeccc
Confidence            799999999999999999999999999999998644444445421             122222  26899999999999


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccc-cceeeeeeecCC
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKD-FAFVYEKVRIRD  152 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g-~~~~~~~~~~~~  152 (275)
                      ++.+++..+ +.  +++++.|+-+ .+...  .+.+.+.++.. .++.+--..|....+.+   ..| ..+.+....+..
T Consensus        79 q~~~al~~l~~~--~~~~t~vl~lqNG~g~--~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~  153 (307)
T COG1893          79 QLEEALPSLAPL--LGPNTVVLFLQNGLGH--EEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR  153 (307)
T ss_pred             cHHHHHHHhhhc--CCCCcEEEEEeCCCcH--HHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence            999999999 87  8888765543 33332  34677776644 33322211122111111   122 122222222223


Q ss_pred             hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhH-----HHHHH----------------HHhhcccc-----cCcc
Q 023897          153 EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLT-----HTIGR----------------VLSELEIQ-----STSM  206 (275)
Q Consensus       153 ~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp-----~~~a~----------------~l~~~~~~-----~~~l  206 (275)
                      ++..+.+.++|+..|..+.+.+.-.+.....++-..+     .++..                .+......     -..+
T Consensus       154 ~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~  233 (307)
T COG1893         154 DELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVEL  233 (307)
T ss_pred             hHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCC
Confidence            4678888999999999887765444444433322111     11100                00000000     0122


Q ss_pred             cCcchHHHHHHhhcC-CCCChhhHHHHHHHCHHHHHHHHHHHHHH
Q 023897          207 NTKGFETLIRLKESS-VNDSFDLFSGLYIHNRFAKQELLDLEAAF  250 (275)
Q Consensus       207 ~~~~~~~~~rl~~~~-~~~~p~~~~~i~~~N~~~~~~l~~~~~~l  250 (275)
                      ....+....+..... ....+.|++|+....++.++.|.-+.-.+
T Consensus       234 ~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~  278 (307)
T COG1893         234 PEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRL  278 (307)
T ss_pred             CHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHH
Confidence            333344555555554 34558999999987777777777766554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.26  E-value=6.7e-10  Score=103.20  Aligned_cols=170  Identities=12%  Similarity=0.100  Sum_probs=109.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHHc--------------------CceEecChHHHhccCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQLCHRS--------------------GISFFSDKRAFLEADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~~--------------------g~~~~~~~~~~~~~~a   68 (275)
                      +|||+|||+|.+|..+|..|++.|  ++|+++|++++...+.+.                    ....+++..++ +.++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~-i~~a   79 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH-VAEA   79 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH-HhcC
Confidence            589999999999999999999985  789999999753221110                    13566777765 4899


Q ss_pred             CEEEEecCch---------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC---CC-ceeecCCC
Q 023897           69 DVILISTSIL---------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE---EM-DVLCTHPM  128 (275)
Q Consensus        69 D~iilavp~~---------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~---~~-~~v~~hP~  128 (275)
                      |++|+|||+.               .+.++++.+ +.  ++++++|+--+++.....+.+.+.+..   +. .++...|.
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~--l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE  157 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV--SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE  157 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhh--CCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence            9999999632               467888888 77  888999887777666555555443321   22 24566665


Q ss_pred             CCCC-CCcCCccccceeeeeeecC--ChHHHHHHHHHHHHcC--CeEEEcChhHHHHHHHH
Q 023897          129 FGPE-SGQNGWKDFAFVYEKVRIR--DEATCSSFLRIFESEG--CKMLEMSCEEHDKVAAK  184 (275)
Q Consensus       129 ~g~~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~G--~~v~~~~~~~hD~~~a~  184 (275)
                      +-.+ ..-..+...+.++.+....  .++..+.++++++.+-  ..+..++.+. ..+..+
T Consensus       158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~-AE~~K~  217 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWS-AELSKL  217 (473)
T ss_pred             ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHH-HHHHHH
Confidence            4332 1223345556565433210  1345788889998874  4556666554 334443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.24  E-value=9.5e-10  Score=91.71  Aligned_cols=161  Identities=16%  Similarity=0.224  Sum_probs=118.2

Q ss_pred             CCeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChhh------hHHHHcCceEecChHHHh
Q 023897           11 TLKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDHS------QLCHRSGISFFSDKRAFL   64 (275)
Q Consensus        11 ~~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~~------~~a~~~g~~~~~~~~~~~   64 (275)
                      +|||+|.|+|+-                    |+.||..++++||+|++.++|.+.      +.-...|++++++-.++ 
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~ea-   79 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEA-   79 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhh-
Confidence            489999999985                    889999999999999999988642      23456799888777775 


Q ss_pred             ccCCCEEEEecCch-hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHH-HHHHhhCC---CCCceeecCCCCCCCCCcCCc
Q 023897           65 EADNDVILISTSIL-SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPR-NVLLQVLP---EEMDVLCTHPMFGPESGQNGW  138 (275)
Q Consensus        65 ~~~aD~iilavp~~-~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~-~~l~~~l~---~~~~~v~~hP~~g~~~~~~~~  138 (275)
                      ++.+++.++-+|.. .+..+.+++ ++  ++.|.+++.++++....+ ..++..|.   .++-+-+.||-.-|....   
T Consensus        80 a~~~Ei~VLFTPFGk~T~~Iarei~~h--vpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---  154 (340)
T COG4007          80 AEHGEIHVLFTPFGKATFGIAREILEH--VPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---  154 (340)
T ss_pred             hhcceEEEEecccchhhHHHHHHHHhh--CcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---
Confidence            58999999999998 778899999 87  899999999888766543 33444443   234566778854443211   


Q ss_pred             cccceeeeee-----ecCChHHHHHHHHHHHHcCCeEEEcChhHH
Q 023897          139 KDFAFVYEKV-----RIRDEATCSSFLRIFESEGCKMLEMSCEEH  178 (275)
Q Consensus       139 ~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~G~~v~~~~~~~h  178 (275)
                      ++. +++.+.     .-.+++.++++.++.++.|..+|+++++--
T Consensus       155 h~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~  198 (340)
T COG4007         155 HGH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV  198 (340)
T ss_pred             Cce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence            222 332211     113678899999999999999999986533

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.20  E-value=3.2e-11  Score=95.79  Aligned_cols=115  Identities=18%  Similarity=0.133  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-h-hHHHHcCc----eEecChHHHhccCCCEEEEecCchhH-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-S-QLCHRSGI----SFFSDKRAFLEADNDVILISTSILSL-   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~-~~a~~~g~----~~~~~~~~~~~~~aD~iilavp~~~~-   80 (275)
                      ...++|+|+|+|.||.+++..|.+.| ++|++++|+++ . +.+.+.+.    ....+.++. ++++|+||.|+|+... 
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL-LAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc-cccCCEEEeCcCCCCCC
Confidence            45679999999999999999999986 78999999974 2 23344342    234566664 4899999999999864 


Q ss_pred             -HHHhhcCCCCCCCCCcEEEeCCCCCh--hHHHHHHhhCCCCCceeecCCCC
Q 023897           81 -SEVLNSLPVHCLQRRTLIADVLSVKE--YPRNVLLQVLPEEMDVLCTHPMF  129 (275)
Q Consensus        81 -~~v~~~l~~~~l~~~~iv~d~~s~k~--~~~~~l~~~l~~~~~~v~~hP~~  129 (275)
                       .++......  ++++++++|+++.+.  ...+.+++   .+..++++|||+
T Consensus        96 ~~~~~~~~~~--~~~~~~v~D~~~~~~~~~l~~~~~~---~g~~~v~g~~~~  142 (155)
T cd01065          96 GDELPLPPSL--LKPGGVVYDVVYNPLETPLLKEARA---LGAKTIDGLEML  142 (155)
T ss_pred             CCCCCCCHHH--cCCCCEEEEcCcCCCCCHHHHHHHH---CCCceeCCHHHH
Confidence             111111112  578899999998876  33344333   357889888875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=3e-10  Score=100.09  Aligned_cols=151  Identities=17%  Similarity=0.189  Sum_probs=108.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHH----cCceEecChHHHh--ccCCCEEEEecCch-hH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHR----SGISFFSDKRAFL--EADNDVILISTSIL-SL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~----~g~~~~~~~~~~~--~~~aD~iilavp~~-~~   80 (275)
                      .++.||+||+|.||+.||..+.++|+.|.+|+|+.+. . ...+    ..+..+.++++.+  ++..--|++.|+.. .+
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V   81 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV   81 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence            4568999999999999999999999999999999853 2 2222    2345556676643  25677888888874 46


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCCCCC-hhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHH
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVLSVK-EYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~s~k-~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                      ..+++++ |+  +.+|.|++|-++.. .+......++...+..||+. =++|.+.+   ...-|.++.+   .++++++.
T Consensus        82 D~~I~~L~p~--Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~-GVSGGEeG---A~~GPSiMpG---G~~eay~~  152 (473)
T COG0362          82 DAVIEQLLPL--LEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM-GVSGGEEG---ARHGPSIMPG---GQKEAYEL  152 (473)
T ss_pred             HHHHHHHHhh--cCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec-cccccccc---cccCCCcCCC---CCHHHHHH
Confidence            7889999 98  99999999988654 33444555555567889984 34555533   3334566543   37889999


Q ss_pred             HHHHHHHcCCe
Q 023897          159 FLRIFESEGCK  169 (275)
Q Consensus       159 ~~~l~~~~G~~  169 (275)
                      ++.+|..+.++
T Consensus       153 v~pil~~IaAk  163 (473)
T COG0362         153 VAPILTKIAAK  163 (473)
T ss_pred             HHHHHHHHHhh
Confidence            99999987543

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.15  E-value=2.5e-09  Score=93.44  Aligned_cols=186  Identities=13%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~   86 (275)
                      ...++|+|||+|.||..+|+.|+..|++|++|+|... ...+...|... .+++++ ++.||+|++++|......++. +
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Ea-ak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEA-VRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHH-HhcCCEEEEeCCChHHHHHHHHH
Confidence            4668999999999999999999999999999987643 34556667765 378886 589999999999877778774 4


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCC-CCc--CCccccceeeeeeecCChHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPE-SGQ--NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~-~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      + +.  +++|.+++=.-+... .   ..... |.++.++=..|=.+.. ...  ..-.|.|.++.-..-.+..+.+....
T Consensus        92 il~~--MK~GaiL~f~hgfni-~---~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala  165 (335)
T PRK13403         92 VEEN--LREGQMLLFSHGFNI-H---FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA  165 (335)
T ss_pred             HHhc--CCCCCEEEECCCcce-e---cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence            5 76  889887763322111 0   11111 3455555444422111 100  11146666655332234557778888


Q ss_pred             HHHHcCCe---EEEcCh---hHHHHHH---HHhhhhHHHH---HHHHhhcccc
Q 023897          162 IFESEGCK---MLEMSC---EEHDKVA---AKSQFLTHTI---GRVLSELEIQ  202 (275)
Q Consensus       162 l~~~~G~~---v~~~~~---~~hD~~~---a~~~~lp~~~---a~~l~~~~~~  202 (275)
                      ....+|+.   ++.++-   .+-|...   .+++.+..++   -..|++.|..
T Consensus       166 ~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~  218 (335)
T PRK13403        166 YAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYR  218 (335)
T ss_pred             HHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCC
Confidence            88999876   555542   2445432   2344555443   2355555554

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.15  E-value=2.5e-09  Score=94.75  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHH--------------------HHcC-ceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLC--------------------HRSG-ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a--------------------~~~g-~~~~~~~~~~~~~~aD~   70 (275)
                      ++|+|||+|.+|..+|..++++|++|+++|.++.....                    .+.| .+.+++.+++  +.||+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--~~~dv   87 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--KECDV   87 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--ccCCE
Confidence            79999999999999999999999999999999742211                    1222 3678888874  79999


Q ss_pred             EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHH----Hhh---CCCCCceeecCCCCCCC
Q 023897           71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVL----LQV---LPEEMDVLCTHPMFGPE  132 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l----~~~---l~~~~~~v~~hP~~g~~  132 (275)
                      +++|||..          .+....+.+ +.  |++|.+++-=+++.....+.+    .+.   |.-+..|.-.|   .|+
T Consensus        88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay---sPE  162 (436)
T COG0677          88 FIICVPTPLKKYREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY---SPE  162 (436)
T ss_pred             EEEEecCCcCCCCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee---Ccc
Confidence            99999983          466777888 77  999998876555554444433    332   11122232222   334


Q ss_pred             CCcCC-----ccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          133 SGQNG-----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       133 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .-.++     ....+-++.   +.+++..+..+.|++.+--.++.++
T Consensus       163 Rv~PG~~~~el~~~~kVIg---G~tp~~~e~a~~lY~~iv~~~~~vt  206 (436)
T COG0677         163 RVLPGNVLKELVNNPKVIG---GVTPKCAELAAALYKTIVEGVIPVT  206 (436)
T ss_pred             ccCCCchhhhhhcCCceee---cCCHHHHHHHHHHHHHheEEEEEcC
Confidence            32111     122333443   2367777888888888765555554

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=99.10  E-value=7.4e-10  Score=96.00  Aligned_cols=210  Identities=12%  Similarity=0.156  Sum_probs=132.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--C-----CeEEEEcCChhhh-----HHH--H---------------cCceEecCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--G-----HILRATSRTDHSQ-----LCH--R---------------SGISFFSDK   60 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g-----~~V~~~dr~~~~~-----~a~--~---------------~g~~~~~~~   60 (275)
                      ...||+|||.|+||+++|+.+.+.  +     .+|..|-+.....     ...  +               .++...+|+
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            346899999999999999999874  2     2677776554211     110  0               123467788


Q ss_pred             HHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-C----CCh----hHHHHHHhhCCCCCceeecCCCCC
Q 023897           61 RAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVL-S----VKE----YPRNVLLQVLPEEMDVLCTHPMFG  130 (275)
Q Consensus        61 ~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s----~k~----~~~~~l~~~l~~~~~~v~~hP~~g  130 (275)
                      .++ +.+||+++..+|.+.+..+++++ .+  ++++...+++. +    -++    -+.+.+.+.++-...+     +.|
T Consensus       100 ~ea-~~dADilvf~vPhQf~~~ic~~l~g~--vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v-----L~G  171 (372)
T KOG2711|consen  100 VEA-AKDADILVFVVPHQFIPRICEQLKGY--VKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV-----LMG  171 (372)
T ss_pred             HHH-hccCCEEEEeCChhhHHHHHHHHhcc--cCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee-----ecC
Confidence            886 58999999999999999999999 77  88887776532 0    111    1344555555433333     345


Q ss_pred             CCCCcCCccccceeeeeeecCChHHH-HHHHHHHHHcCCeEEEcChhHHHHHHH-HhhhhHHHHHHHHh--h-ccccc--
Q 023897          131 PESGQNGWKDFAFVYEKVRIRDEATC-SSFLRIFESEGCKMLEMSCEEHDKVAA-KSQFLTHTIGRVLS--E-LEIQS--  203 (275)
Q Consensus       131 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~v~~~~~~~hD~~~a-~~~~lp~~~a~~l~--~-~~~~~--  203 (275)
                      ++.+.|.+.+...-.+-. +.++... ..+.++|+.-.++++.++    |.... +.+.|.+++|.+..  + ++...  
T Consensus       172 aNiA~EVa~~~f~e~tIg-~~~~~~~~~~l~~lf~~p~FrV~~~~----D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NT  246 (372)
T KOG2711|consen  172 ANIASEVANEKFCETTIG-YKDKKEAGILLKKLFRTPYFRVVVVE----DADGVEICGALKNVVAIAAGFVDGLGLGNNT  246 (372)
T ss_pred             CchHHHHHhccccceeEe-ccchhhcchHHHHHhCCCceEEEEec----cchHhHHhhhHHhHHHHhhhhhhhccCCcch
Confidence            555444333321111111 1122222 358999999999988875    55443 55799999876554  3 33322  


Q ss_pred             -CcccCcchHHHHHHhhcCCCC-ChhhHHHH
Q 023897          204 -TSMNTKGFETLIRLKESSVND-SFDLFSGL  232 (275)
Q Consensus       204 -~~l~~~~~~~~~rl~~~~~~~-~p~~~~~i  232 (275)
                       ..+.-.|+.+|.+++.-.+.+ .|++|.+-
T Consensus       247 kaAi~r~Gl~Em~~F~~~f~p~~~~~t~~es  277 (372)
T KOG2711|consen  247 KAAIIRLGLLEMIKFATHFYPGSKPTTFFES  277 (372)
T ss_pred             HHHHHHhhHHHHHHHHHHhCCCCCcceeecc
Confidence             346677899999988887766 56555443

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.10  E-value=1.7e-09  Score=96.66  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|+||+.+|+.|+..|.+|.+|||++........|... .+++++ +++||+|++++|... +..++. 
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~el-l~~aDiV~l~lP~t~~T~~~i~~  224 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEEL-LRESDFVSLHVPLTKETYHMINE  224 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHH-HhhCCEEEEeCCCChHHhhccCH
Confidence            4567899999999999999999999999999999987433334445544 478886 589999999999753 455553 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      +. ..  +++|.++++++.......+.+.+.+..
T Consensus       225 ~~~~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~  256 (333)
T PRK13243        225 ERLKL--MKPTAILVNTARGKVVDTKALVKALKE  256 (333)
T ss_pred             HHHhc--CCCCeEEEECcCchhcCHHHHHHHHHc
Confidence            33 55  889999999986544334455555543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.07  E-value=1.1e-08  Score=90.42  Aligned_cols=164  Identities=12%  Similarity=0.146  Sum_probs=98.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHH-HcCceEe------------cChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCH-RSGISFF------------SDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~-~~g~~~~------------~~~~~~~~~~aD~iilavp   76 (275)
                      .|||+|+|+|.||+.+|..|.+.|++|++++|.+ ..+... +.|+...            .+.++  ...+|+||+||+
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~--~~~~D~viv~vK   79 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA--AEPIHRLLLACK   79 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc--ccccCEEEEECC
Confidence            4799999999999999999999999999999986 333222 2243221            11111  246899999999


Q ss_pred             chhHHHHhhcC-CCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccccceeeeeeecC
Q 023897           77 ILSLSEVLNSL-PVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDFAFVYEKVRIR  151 (275)
Q Consensus        77 ~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~~~~~~~~~~~  151 (275)
                      .....+++..+ +.  +.+++.++.+- ++-  ..+.+.+.++.. +++++--..|....+++   ..+...+..+..  
T Consensus        80 ~~~~~~al~~l~~~--l~~~t~vv~lQNGv~--~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~--  152 (305)
T PRK05708         80 AYDAEPAVASLAHR--LAPGAELLLLQNGLG--SQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP--  152 (305)
T ss_pred             HHhHHHHHHHHHhh--CCCCCEEEEEeCCCC--CHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEEEEcCC--
Confidence            99999999999 87  88887666433 332  234566666543 23322222222211100   111111222211  


Q ss_pred             ChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          152 DEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       152 ~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                      +.+..+.+.++|...|..+...+.-+......
T Consensus       153 ~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~K  184 (305)
T PRK05708        153 RNPTAPAWLDDLREAGIPHEWTVDILTRLWRK  184 (305)
T ss_pred             CCcchHHHHHHHHhcCCCCccCHHHHHHHHHH
Confidence            22345778888888887666544334444444

>PLN03139 formate dehydrogenase; Provisional

Probab=99.03  E-value=9.5e-09  Score=92.99  Aligned_cols=108  Identities=18%  Similarity=0.240  Sum_probs=81.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|+||..+|+.|+..|.+|.+|||+.. .....+.|+....+++++ ++++|+|++++|.. .+..++.
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~sDvV~l~lPlt~~T~~li~  274 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAM-LPKCDVVVINTPLTEKTRGMFN  274 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHH-HhhCCEEEEeCCCCHHHHHHhC
Confidence            45778999999999999999999999999999999863 333445677666789996 58999999999964 4556554


Q ss_pred             c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      + . ..  +++|.++++++--.....+.+.+.+..
T Consensus       275 ~~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~s  307 (386)
T PLN03139        275 KERIAK--MKKGVLIVNNARGAIMDTQAVADACSS  307 (386)
T ss_pred             HHHHhh--CCCCeEEEECCCCchhhHHHHHHHHHc
Confidence            2 2 44  899999999885443333455555543

>PRK07574 formate dehydrogenase; Provisional

Probab=99.03  E-value=8.6e-09  Score=93.32  Aligned_cols=107  Identities=15%  Similarity=0.285  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|+||+.+|+.|+..|.+|.+|||+. ........|+....+++++ ++.||+|++++|.. .+..++.
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~lPlt~~T~~li~  267 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSL-VSVCDVVTIHCPLHPETEHLFD  267 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHH-hhcCCEEEEcCCCCHHHHHHhC
Confidence            3567899999999999999999999999999999986 3333345577666789996 58999999999964 4566664


Q ss_pred             c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      + . ..  +++|.++++++.......+.+.+.+.
T Consensus       268 ~~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~  299 (385)
T PRK07574        268 ADVLSR--MKRGSYLVNTARGKIVDRDAVVRALE  299 (385)
T ss_pred             HHHHhc--CCCCcEEEECCCCchhhHHHHHHHHH
Confidence            3 2 54  89999999988655433445555544

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.02  E-value=1.9e-09  Score=96.01  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHh-h
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVL-N   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~-~   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++.....   ......+++++ ++++|+|++++|... +..++ .
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~el-l~~aDiVil~lP~t~~t~~li~~  218 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEA-IKDADIISLHVPANKESYHLFDK  218 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHH-HhcCCEEEEeCCCcHHHHHHHhH
Confidence            456789999999999999999999999999999998743211   12234578886 589999999999764 33333 3


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      ++ +.  +++|.++++++--...-.+.+.+.+.
T Consensus       219 ~~l~~--mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        219 AMFDH--VKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             HHHhc--CCCCcEEEEcCCccccCHHHHHHHHH
Confidence            44 55  88999999987433222234444443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.99  E-value=1.7e-09  Score=85.11  Aligned_cols=151  Identities=14%  Similarity=0.104  Sum_probs=88.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh-hc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL-NS   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~-~~   86 (275)
                      +.++|+|||+|..|.+.|..|++.|++|++..|...  .+.|++.|.++. +..|+ ++++|+|++.+|+....++. ++
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eA-v~~aDvV~~L~PD~~q~~vy~~~   80 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEA-VKKADVVMLLLPDEVQPEVYEEE   80 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHH-HHC-SEEEE-S-HHHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHH-HhhCCEEEEeCChHHHHHHHHHH
Confidence            457999999999999999999999999999888764  578888999875 55665 48999999999999999998 67


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCc---CCccccceeeeeeecCChHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQ---NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      + |+  +++|.++.=.-+.  -+  ...... +.++.++-.+|-.+...-.   ..-.|.|.++.-..-.+..+.+....
T Consensus        81 I~p~--l~~G~~L~fahGf--ni--~~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala  154 (165)
T PF07991_consen   81 IAPN--LKPGATLVFAHGF--NI--HYGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALA  154 (165)
T ss_dssp             HHHH--S-TT-EEEESSSH--HH--HCTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHH
T ss_pred             HHhh--CCCCCEEEeCCcc--hh--hcCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHH
Confidence            7 88  9999887643221  11  111111 3445555555532221100   01135555544322223445566666


Q ss_pred             HHHHcCC
Q 023897          162 IFESEGC  168 (275)
Q Consensus       162 l~~~~G~  168 (275)
                      +...+|+
T Consensus       155 ~A~~iG~  161 (165)
T PF07991_consen  155 YAKAIGG  161 (165)
T ss_dssp             HHHHTTH
T ss_pred             HHHHhCC
Confidence            6666653

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.98  E-value=9.6e-09  Score=91.05  Aligned_cols=109  Identities=15%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....+++||||+|++|+.+|+.++..|.+|++||+..........+.....+++++ +++||+|++.+|.. .++.++..
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~l-L~~sDiv~lh~PlT~eT~g~i~~  217 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDEL-LAEADILTLHLPLTPETRGLINA  217 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHH-HhhCCEEEEcCCCCcchhcccCH
Confidence            34578999999999999999999999999999999554334444556666789996 58999999999974 45666643


Q ss_pred             C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897           87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE  119 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~  119 (275)
                      -  ..  +++|.++++++--.....+.+.+.+..+
T Consensus       218 ~~~a~--MK~gailIN~aRG~vVde~aL~~AL~~G  250 (324)
T COG0111         218 EELAK--MKPGAILINAARGGVVDEDALLAALDSG  250 (324)
T ss_pred             HHHhh--CCCCeEEEECCCcceecHHHHHHHHHcC
Confidence            3  44  8899999998743332234455555433

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.96  E-value=6.5e-09  Score=90.91  Aligned_cols=94  Identities=21%  Similarity=0.292  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe--cChHHHhccCCCEEEEecCchhHH-HH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF--SDKRAFLEADNDVILISTSILSLS-EV   83 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~-~v   83 (275)
                      .....+|+|||+|.+|.++|+.|+..|.+|++++|+++ ...+.+.|....  .++.+. +.++|+||.++|...+. +.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~-l~~aDiVint~P~~ii~~~~  226 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEK-VAEIDIVINTIPALVLTADV  226 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHH-hccCCEEEECCChHHhCHHH
Confidence            44568999999999999999999999999999999984 444555565432  345564 48999999999976432 22


Q ss_pred             hhcCCCCCCCCCcEEEeCCCCChh
Q 023897           84 LNSLPVHCLQRRTLIADVLSVKEY  107 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~k~~  107 (275)
                      +   ..  ++++.+++|+++.+..
T Consensus       227 l---~~--~k~~aliIDlas~Pg~  245 (287)
T TIGR02853       227 L---SK--LPKHAVIIDLASKPGG  245 (287)
T ss_pred             H---hc--CCCCeEEEEeCcCCCC
Confidence            2   33  6778999999987654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.96  E-value=1.5e-09  Score=88.48  Aligned_cols=106  Identities=16%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhH-HHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQL-CHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|.+|+.+|+.++..|.+|++|||+..... ....++. ..+++++ ++.+|+|++++|.. .+..++.
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~el-l~~aDiv~~~~plt~~T~~li~  110 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDEL-LAQADIVSLHLPLTPETRGLIN  110 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHH-HHH-SEEEE-SSSSTTTTTSBS
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhh-cchhhhhhhhhccccccceeee
Confidence            45678999999999999999999999999999999986433 5555664 4588886 58999999999953 2333332


Q ss_pred             cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +-  ..  +++|.++++++--.....+.+.+.+.
T Consensus       111 ~~~l~~--mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen  111 AEFLAK--MKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             HHHHHT--STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             eeeeec--cccceEEEeccchhhhhhhHHHHHHh
Confidence            21  33  78899999987543322344554443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.94  E-value=3.4e-09  Score=94.62  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHH-HHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH-HHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTM-IKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS-EVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L-~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~-~v~~   85 (275)
                      ....++|||||+|.||+++|+.| ...|.+|++||+++....  ..++....+++++ ++++|+|++++|..... .++.
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~el-l~~aDvIvl~lP~t~~t~~li~  219 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEA-VEGADIVTLHMPATKYNHYLFN  219 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHH-HHhCCEEEEeCCCCcchhhhcC
Confidence            45678999999999999999999 446889999998864221  1234445688886 58999999999986543 3332


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                       +. +.  +++|.++++++.......+.+.+.+
T Consensus       220 ~~~l~~--mk~gailIN~sRG~~vd~~aL~~aL  250 (332)
T PRK08605        220 ADLFKH--FKKGAVFVNCARGSLVDTKALLDAL  250 (332)
T ss_pred             HHHHhc--CCCCcEEEECCCCcccCHHHHHHHH
Confidence             22 45  7899999998854433334444444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.93  E-value=1.9e-08  Score=88.48  Aligned_cols=102  Identities=24%  Similarity=0.357  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-EecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-FFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|.||+.+|+.++..|++|++|||+...     .+.. ...+++++ +++||+|++++|.. .+..++.
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~~~~~~~~~l~el-l~~aDiv~~~lp~t~~T~~li~  192 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----DGISSIYMEPEDI-MKKSDFVLISLPLTDETRGMIN  192 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----cCcccccCCHHHH-HhhCCEEEECCCCCchhhcCcC
Confidence            456789999999999999999998889999999997531     1222 24578886 58999999999975 3455544


Q ss_pred             c--CCCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 S--LPVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~--l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +  +..  +++|.++++++.......+.+.+.+.
T Consensus       193 ~~~l~~--mk~ga~lIN~sRG~~vd~~aL~~aL~  224 (303)
T PRK06436        193 SKMLSL--FRKGLAIINVARADVVDKNDMLNFLR  224 (303)
T ss_pred             HHHHhc--CCCCeEEEECCCccccCHHHHHHHHH
Confidence            2  244  78999999988644433344555443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.91  E-value=2.1e-08  Score=94.85  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+.+|+.|+..|.+|++||+......+.+.|+....+++++ +++||+|++++|.. .+..++. 
T Consensus       135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDEL-LARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHH-HhhCCEEEEccCCChhhccCcCH
Confidence            45678999999999999999999999999999998643334455677666688986 58999999999965 4555552 


Q ss_pred             -cCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 -SLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 -~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                       .+..  ++++.++++++.-.....+.+.+.+..
T Consensus       214 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~  245 (525)
T TIGR01327       214 EELAK--MKKGVIIVNCARGGIIDEAALYEALEE  245 (525)
T ss_pred             HHHhc--CCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence             2244  889999999885443233445554443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.91  E-value=3.8e-08  Score=87.21  Aligned_cols=142  Identities=16%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEcCChhh--------hHH-----------HHcC-------------ceEecC--hHHHhccC
Q 023897           22 FGQFLAKTMIKQGHILRATSRTDHS--------QLC-----------HRSG-------------ISFFSD--KRAFLEAD   67 (275)
Q Consensus        22 mG~sla~~L~~~g~~V~~~dr~~~~--------~~a-----------~~~g-------------~~~~~~--~~~~~~~~   67 (275)
                      ||+.+|..++.+|++|++||++++.        +.+           .+.|             ++++++  ..++ +++
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a-~~~   79 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA-LAD   79 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH-hcc
Confidence            7999999999999999999998831        111           1112             234433  4464 489


Q ss_pred             CCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897           68 NDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV  144 (275)
Q Consensus        68 aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~  144 (275)
                      ||+||.|+|.+.  -..++.++ ..  +++++++...+|.  .....+.+.++...++++.|+..+|..-      ..+-
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~--~~~~~ilaSntS~--~~~~~la~~~~~p~r~~g~Hf~~Pp~~~------~lvE  149 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRH--VDADAIIASTTST--FLVTDLQRHVAHPERFLNAHWLNPAYLM------PLVE  149 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhh--CCCCcEEEEcccc--CCHHHHHhhcCCcccEEEEecCCccccC------ceEE
Confidence            999999999874  24667777 66  7899999765554  3345666666555689999998777542      1233


Q ss_pred             eeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          145 YEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ++++..++++.++.+..+++.+|.+++++.
T Consensus       150 Vv~g~~t~~e~~~~~~~ll~~lGk~~v~v~  179 (314)
T PRK08269        150 VSPSDATDPAVVDRLAALLERIGKVPVVCG  179 (314)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            344556688999999999999999988875

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.91  E-value=5.3e-09  Score=85.92  Aligned_cols=156  Identities=17%  Similarity=0.075  Sum_probs=107.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------HcC--------------ceEecChHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RSG--------------ISFFSDKRAFL   64 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~g--------------~~~~~~~~~~~   64 (275)
                      ..||+|+|.|.+|+++|..|+..||+|..||..++ ...|.           +.|              +..+++++|+ 
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~-   81 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL-   81 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH-
Confidence            46999999999999999999999999999999874 22221           122              2457888996 


Q ss_pred             ccCCCEEEEecCchhH--HHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILSL--SEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~~--~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      .++|=.|=-|+|.+--  ..+...+ ..  +.+.+|+.+.+|+--  ...+.+-+....+.+-.||+.+|-.-+      
T Consensus        82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i--~d~~tIlaSSTSt~m--pS~~s~gL~~k~q~lvaHPvNPPyfiP------  151 (313)
T KOG2305|consen   82 VKGAIHIQECVPEDLNLKKQLYKQLDEI--ADPTTILASSTSTFM--PSKFSAGLINKEQCLVAHPVNPPYFIP------  151 (313)
T ss_pred             HhhhhhHHhhchHhhHHHHHHHHHHHHh--cCCceEEeccccccC--hHHHhhhhhhhhheeEecCCCCCcccc------
Confidence            5888888889998632  3344444 33  566777775544332  223333333334567789998886531      


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhH
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEE  177 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~  177 (275)
                      .+-++|.+.+.++.+++..++++++|.+++....+.
T Consensus       152 LvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei  187 (313)
T KOG2305|consen  152 LVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREI  187 (313)
T ss_pred             hheeccCCCCChhHHHHHHHHHHHhCCCCccccccc
Confidence            133445555678899999999999998888775443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.89  E-value=3.1e-08  Score=93.73  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+.+|+.|+..|.+|++|||+.....+...|+... +++++ ++++|+|++++|.. .+..++. 
T Consensus       137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~el-l~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDEL-LARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHH-HhhCCEEEEccCCChHhhcCcCH
Confidence            34678999999999999999999999999999999754334455677665 78886 58999999999975 4555553 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      +. ..  ++++.++++++.......+.+.+.+..
T Consensus       215 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~  246 (526)
T PRK13581        215 EELAK--MKPGVRIINCARGGIIDEAALAEALKS  246 (526)
T ss_pred             HHHhc--CCCCeEEEECCCCceeCHHHHHHHHhc
Confidence            23 44  889999999875443333455555543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.87  E-value=1.7e-08  Score=79.74  Aligned_cols=109  Identities=26%  Similarity=0.380  Sum_probs=75.4

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE--------------ecChHHHhccCCCEEEEecCchh
Q 023897           14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF--------------FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~--------------~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      |+|+|+|.||..+|..|++.|++|.+++|++..+...+.|+..              .....+. ...+|+||+||+..+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSAD-AGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHH-HSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhc-cCCCcEEEEEecccc
Confidence            7899999999999999999999999999998333333344422              1222122 378999999999999


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCC
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP  127 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP  127 (275)
                      ..++++.+ +.  +.+++.++..-+--. ..+.+++.++.. +++.+..
T Consensus        80 ~~~~l~~l~~~--~~~~t~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~  124 (151)
T PF02558_consen   80 LEQALQSLKPY--LDPNTTIVSLQNGMG-NEEVLAEYFPRP-RVLGGVT  124 (151)
T ss_dssp             HHHHHHHHCTG--EETTEEEEEESSSSS-HHHHHHCHSTGS-GEEEEEE
T ss_pred             hHHHHHHHhhc--cCCCcEEEEEeCCCC-cHHHHHHHcCCC-cEEEEEE
Confidence            99999999 76  777755554433322 346777776543 4444433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.85  E-value=4.3e-09  Score=86.43  Aligned_cols=155  Identities=11%  Similarity=0.091  Sum_probs=103.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----------cC------------------ceEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----------SG------------------ISFF   57 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----------~g------------------~~~~   57 (275)
                      .....+|+|||+|.||+.+|+.-+..|++|+++|++++ +..+.+           .+                  +...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            34556899999999999999999999999999999974 322211           00                  1235


Q ss_pred             cChHHHhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC
Q 023897           58 SDKRAFLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG  134 (275)
Q Consensus        58 ~~~~~~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~  134 (275)
                      ++...+ +.++|+||-++-.+.  -.++..++ ..  .++.++++..+|.-.  +..+...+....+|.+.|-+.++.. 
T Consensus        88 tnv~~~-v~dadliiEAivEn~diK~~lF~~l~~~--ak~~~il~tNTSSl~--lt~ia~~~~~~srf~GlHFfNPvPv-  161 (298)
T KOG2304|consen   88 TNVSDA-VSDADLIIEAIVENLDIKRKLFKDLDKI--AKSSTILATNTSSLS--LTDIASATQRPSRFAGLHFFNPVPV-  161 (298)
T ss_pred             CCHHHh-hhhhHHHHHHHHHhHHHHHHHHHHHHhh--cccceEEeeccccee--HHHHHhhccChhhhceeeccCCchh-
Confidence            566665 478999988876542  35677777 54  677888875444322  3445555555578999996555442 


Q ss_pred             cCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                          ... .-+..+..++++.+..+..+-+.+|..++-+
T Consensus       162 ----MKL-vEVir~~~TS~eTf~~l~~f~k~~gKttVac  195 (298)
T KOG2304|consen  162 ----MKL-VEVIRTDDTSDETFNALVDFGKAVGKTTVAC  195 (298)
T ss_pred             ----HHH-hhhhcCCCCCHHHHHHHHHHHHHhCCCceee
Confidence                111 1122233357888899999999999776655

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.82  E-value=1.1e-07  Score=84.42  Aligned_cols=107  Identities=15%  Similarity=0.230  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....+++||||+|+||+.+|+.++ ..|.+|.+|+|..........++.. .+++++ +++||+|++++|-. .+..++.
T Consensus       142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~-~~l~el-l~~sDvv~lh~plt~~T~~li~  219 (323)
T PRK15409        142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARY-CDLDTL-LQESDFVCIILPLTDETHHLFG  219 (323)
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEe-cCHHHH-HHhCCEEEEeCCCChHHhhccC
Confidence            457789999999999999999997 6788999999875333233456654 488886 58999999999964 4555554


Q ss_pred             cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      .-  ..  ++++.++++++--.....+.+.+.+..
T Consensus       220 ~~~l~~--mk~ga~lIN~aRG~vVde~AL~~AL~~  252 (323)
T PRK15409        220 AEQFAK--MKSSAIFINAGRGPVVDENALIAALQK  252 (323)
T ss_pred             HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence            22  44  889999999874322222445555443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.80  E-value=3.4e-08  Score=85.74  Aligned_cols=79  Identities=15%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      +|+++||||||+|.||..++..|.+.  ++++. +|||+++.  ..+.+.|. ...++.+++ +.++|+|++|+|.+...
T Consensus         3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel-l~~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL-ATHADIVVEAAPASVLR   81 (271)
T ss_pred             CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH-hcCCCEEEECCCcHHHH
Confidence            35668999999999999999999874  67776 68998753  34455564 566788886 58899999999999888


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      ++....
T Consensus        82 e~~~~a   87 (271)
T PRK13302         82 AIVEPV   87 (271)
T ss_pred             HHHHHH
Confidence            887766

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.78  E-value=1.2e-07  Score=83.86  Aligned_cols=106  Identities=21%  Similarity=0.240  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|.||+.+|+.|...|++|.+|++++... ....  .....+++++ +++||+|++++|.. .+..++.
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~-l~~aDvvv~~lPlt~~T~~li~  209 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAF-LSQTRVLINLLPNTPETVGIIN  209 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHH-HhcCCEEEECCCCCHHHHHHhH
Confidence            4566899999999999999999999999999999876321 0010  0112467886 58999999999964 4556654


Q ss_pred             c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      + . ..  +++|.++++++--.....+.+.+.+..
T Consensus       210 ~~~l~~--mk~ga~lIN~aRG~vVde~aL~~aL~~  242 (312)
T PRK15469        210 QQLLEQ--LPDGAYLLNLARGVHVVEDDLLAALDS  242 (312)
T ss_pred             HHHHhc--CCCCcEEEECCCccccCHHHHHHHHhc
Confidence            3 2 44  889999999874322222345444443

>PLN02928 oxidoreductase family protein

Probab=98.78  E-value=1.4e-07  Score=84.78  Aligned_cols=107  Identities=19%  Similarity=0.252  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHH-------------cCceEecChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHR-------------SGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~-------------~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      ....++|||||+|.||+.+|+.|+..|.+|++|||+........             .+. ...+++++ +++||+|+++
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~el-l~~aDiVvl~  233 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEF-AGEADIVVLC  233 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHH-HhhCCEEEEC
Confidence            45678999999999999999999999999999999742111110             011 23578886 5899999999


Q ss_pred             cCch-hHHHHhhc-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           75 TSIL-SLSEVLNS-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        75 vp~~-~~~~v~~~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      +|-. .+..++.+ . ..  +++|.++++++--...-.+.+.+.+..
T Consensus       234 lPlt~~T~~li~~~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~  278 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSS--MKKGALLVNIARGGLLDYDAVLAALES  278 (347)
T ss_pred             CCCChHhhcccCHHHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence            9964 34445432 2 44  889999999874332223445555543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.75  E-value=1.2e-07  Score=83.41  Aligned_cols=94  Identities=26%  Similarity=0.300  Sum_probs=72.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe--cChHHHhccCCCEEEEecCchhHH-HH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF--SDKRAFLEADNDVILISTSILSLS-EV   83 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~-~v   83 (275)
                      .....|++|||+|.+|..++..|+..|.+|++++|++. ...+...|....  .++.+. +.++|+||.|+|...+. +.
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~-l~~aDiVI~t~p~~~i~~~~  227 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEE-VGKIDIIFNTIPALVLTKEV  227 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHH-hCCCCEEEECCChhhhhHHH
Confidence            44568999999999999999999999999999999984 455666777543  345564 48999999999976432 22


Q ss_pred             hhcCCCCCCCCCcEEEeCCCCChh
Q 023897           84 LNSLPVHCLQRRTLIADVLSVKEY  107 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~k~~  107 (275)
                      +   ..  ++++.+++|+++..+.
T Consensus       228 l---~~--~~~g~vIIDla~~pgg  246 (296)
T PRK08306        228 L---SK--MPPEALIIDLASKPGG  246 (296)
T ss_pred             H---Hc--CCCCcEEEEEccCCCC
Confidence            2   33  6788999999876654

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.74  E-value=4.9e-07  Score=82.27  Aligned_cols=159  Identities=15%  Similarity=0.136  Sum_probs=103.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC------h-hhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT------D-HSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~------~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ...++|+|||+|.+|.+.|..|+..|++|++--|.      . ....|.+.|..+ .+.+++ ++.||+|++.+|...-.
T Consensus        34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea-~~~ADvVviLlPDt~q~  111 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEEL-IPQADLVINLTPDKQHS  111 (487)
T ss_pred             hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHH-HHhCCEEEEcCChHHHH
Confidence            46689999999999999999999999999854443      2 234556668866 567776 58999999999999767


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCC-CCCCCc--CCccccceeeeeee--cCChHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMF-GPESGQ--NGWKDFAFVYEKVR--IRDEAT  155 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~-g~~~~~--~~~~g~~~~~~~~~--~~~~~~  155 (275)
                      .+.+++ +.  +++|..+.=.-+..  +... .-..+.++.++-..|=. |++...  ..-.|.|..+.-..  -.+..+
T Consensus       112 ~v~~~i~p~--LK~Ga~L~fsHGFn--i~~~-~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a  186 (487)
T PRK05225        112 DVVRAVQPL--MKQGAALGYSHGFN--IVEV-GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG  186 (487)
T ss_pred             HHHHHHHhh--CCCCCEEEecCCce--eeeC-ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence            777888 88  99988775222211  1100 11124556666555532 222211  01146676665431  124557


Q ss_pred             HHHHHHHHHHcCCe---EEEcC
Q 023897          156 CSSFLRIFESEGCK---MLEMS  174 (275)
Q Consensus       156 ~~~~~~l~~~~G~~---v~~~~  174 (275)
                      .+....+...+|+.   ++..+
T Consensus       187 ~~~ala~a~~iG~~ragv~~tt  208 (487)
T PRK05225        187 MAIAKAWAAATGGHRAGVLESS  208 (487)
T ss_pred             HHHHHHHHHHhCCCccceeecc
Confidence            77888888889876   55554

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.72  E-value=6.6e-08  Score=85.70  Aligned_cols=92  Identities=16%  Similarity=0.302  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....+++||||+|+||.++|+.++.-|.+|..|+|++..+...+.+..+.. ++++ ++++|+|.+.+|.. ....++..
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~el-l~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD-LDEL-LAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc-HHHH-HHhCCEEEEeCCCChHHhhhcCH
Confidence            467889999999999999999999778899999999862223334466655 8886 58999999999975 45555543


Q ss_pred             C--CCCCCCCCcEEEeCCC
Q 023897           87 L--PVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s  103 (275)
                      =  ..  ++++.++++++-
T Consensus       221 ~~l~~--mk~ga~lVNtaR  237 (324)
T COG1052         221 EELAK--MKPGAILVNTAR  237 (324)
T ss_pred             HHHHh--CCCCeEEEECCC
Confidence            2  44  889999999873

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=2.2e-07  Score=76.59  Aligned_cols=180  Identities=13%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             CCCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897            5 SPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         5 ~~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ....+..+.++|||+|+.|.+....-.+.++.... ..|++..  ..+...+.... +.+.. .+-.+++|+-+|...+.
T Consensus         4 ~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~-d~~~~-ael~~~vfv~vpd~~~s   81 (289)
T COG5495           4 DGLRPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPL-DVAKS-AELLLLVFVDVPDALYS   81 (289)
T ss_pred             cCccceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCcc-chhhC-hhhhceEEecchHHHHH
Confidence            33455668999999999999844333333333222 2344421  22222232211 11211 24468899999988666


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc-ceeeeeeecCChHHHHHHH
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF-AFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~  160 (275)
                      ++.... .  ..+|++++.+++..+.  ..+...-..++.-.+.||.|-++...+..+.. ..++.... .|+..+..++
T Consensus        82 ~vaa~~-~--~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~e-aD~~g~ai~q  155 (289)
T COG5495          82 GVAATS-L--NRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITE-ADDVGYAIVQ  155 (289)
T ss_pred             HHHHhc-c--cCCCeEEEEccCCCch--hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeec-ccccccHHHH
Confidence            665543 1  4689999998875442  22333223345557889988777544443322 23333323 3666788899


Q ss_pred             HHHHHcCCeEEEcChhHHHHHHHHhhhhHHHH
Q 023897          161 RIFESEGCKMLEMSCEEHDKVAAKSQFLTHTI  192 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~  192 (275)
                      ++...+|++++.+.++..-.+++...|.-+++
T Consensus       156 ~la~emgg~~f~V~~~~r~lYHaaa~~asnf~  187 (289)
T COG5495         156 SLALEMGGEPFCVREEARILYHAAAVHASNFI  187 (289)
T ss_pred             HHHHHhCCCceeechhHHHHHHHHHHHhhccH
Confidence            99999999999999988888888655444433

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.71  E-value=9.2e-07  Score=77.44  Aligned_cols=147  Identities=12%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce--------------EecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           21 PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS--------------FFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        21 ~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~--------------~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .||+.+|..|+++|++|++++|++..+...+.|+.              .++++++  ...+|+||+|||..++.++++.
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~--~~~~D~iiv~vKs~~~~~~l~~   78 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE--LPPADLVIITVKAYQTEEAAAL   78 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEecCCcEEEcccccccChhh--cCCCCEEEEeccchhHHHHHHH
Confidence            37999999999999999999998543333333431              1223444  2689999999999999999999


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccccc-eeeeeeecCChHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDFA-FVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~  161 (275)
                      + +.  +.++++|+.+.+--+ ..+.+.+.++.. +++.+.+..+....+++   ..+.. ..+..... +.+..+.+.+
T Consensus        79 l~~~--l~~~~~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~~  153 (293)
T TIGR00745        79 LLPL--IGKNTKVLFLQNGLG-HEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALAE  153 (293)
T ss_pred             hHhh--cCCCCEEEEccCCCC-CHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHHH
Confidence            9 77  777777765443222 234556655532 34333332222211100   01111 22221111 1245677888


Q ss_pred             HHHHcCCeEEEcC
Q 023897          162 IFESEGCKMLEMS  174 (275)
Q Consensus       162 l~~~~G~~v~~~~  174 (275)
                      +|+..|..+...+
T Consensus       154 ~l~~~~~~~~~~~  166 (293)
T TIGR00745       154 LLNEAGIPAELHG  166 (293)
T ss_pred             HHHhCCCCCEecc
Confidence            9998888766654

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.71  E-value=2.8e-07  Score=84.52  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....++|||||+|++|+.+|+.++..|.+|.+||+++...   ..++....+++++ ++.||+|++++|-. .+..++.+
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~el-l~~sDiVslh~Plt~~T~~li~~  223 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEEL-LAQSDVVSLHVPETPSTKNMIGA  223 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHH-HhhCCEEEEcCCCChHHhhccCH
Confidence            4577899999999999999999999999999999875321   1234445688996 58999999999964 45556543


Q ss_pred             C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      -  ..  +++|.++++++--...-.+.+.+.+.
T Consensus       224 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        224 EELAL--MKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             HHHhc--CCCCeEEEECCCCcccCHHHHHHHHH
Confidence            2  44  88999999987433222234444443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.68  E-value=1.3e-07  Score=81.99  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=61.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC--CCe-EEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ--GHI-LRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~--g~~-V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      +|||+|||+|.||..++..+.+.  +++ +.++|++++.  ..+...+...+++.++++ .++|+|++|+|++...++..
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell-~~~DvVvi~a~~~~~~~~~~   79 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELV-EDVDLVVECASVNAVEEVVP   79 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHh-cCCCEEEEcCChHHHHHHHH
Confidence            37999999999999999999876  355 4468998853  334456777778898864 89999999999998888877


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      .+
T Consensus        80 ~a   81 (265)
T PRK13304         80 KS   81 (265)
T ss_pred             HH
Confidence            76

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=9.4e-08  Score=83.41  Aligned_cols=148  Identities=18%  Similarity=0.222  Sum_probs=102.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh--HHHH---cCceEecChHHHh--ccCCCEEEEecCch-hHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ--LCHR---SGISFFSDKRAFL--EADNDVILISTSIL-SLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~--~a~~---~g~~~~~~~~~~~--~~~aD~iilavp~~-~~~   81 (275)
                      .+.||.||++.||..|+....++|+.|++|+|+.. ..  .+.+   ..+-...++++.+  ++..-.|++-|+.. .+.
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD   85 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD   85 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence            46899999999999999999999999999999874 22  2222   2234456777653  25677888888775 466


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCC-hhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVK-EYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k-~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      ..++++ ++  +.+|.+|+|-++.. .......++....+.-|+++- ++|.+   ++.+.-|.++.+   .+.+++..+
T Consensus        86 ~~I~~L~p~--LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~G-VSGGE---EGAR~GPSlMpG---g~~~Awp~i  156 (487)
T KOG2653|consen   86 QFIEELVPY--LEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSG-VSGGE---EGARYGPSLMPG---GSKEAWPHI  156 (487)
T ss_pred             HHHHHHHhh--cCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecC-ccCcc---cccccCCccCCC---CChHHHHHH
Confidence            788888 88  99999999977543 233344444445567788753 34444   334455666543   367888888


Q ss_pred             HHHHHHcC
Q 023897          160 LRIFESEG  167 (275)
Q Consensus       160 ~~l~~~~G  167 (275)
                      +.+|+.+-
T Consensus       157 k~ifq~ia  164 (487)
T KOG2653|consen  157 KDIFQKIA  164 (487)
T ss_pred             HHHHHHHH
Confidence            88888654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.67  E-value=6.6e-08  Score=87.49  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~   82 (275)
                      ....++|||||+|+||+.+|+.+...|++|.+||+.....    .+.....+++++ +++||+|++++|-..     +..
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~~~~~~~~l~el-l~~aDiV~lh~Plt~~g~~~T~~  187 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----EGDGDFVSLERI-LEECDVISLHTPLTKEGEHPTRH  187 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----ccCccccCHHHH-HhhCCEEEEeCcCCCCccccccc
Confidence            4466899999999999999999999999999999864311    121223578886 589999999999642     444


Q ss_pred             Hhhc--CCCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           83 VLNS--LPVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        83 v~~~--l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      ++.+  +..  +++|+++++++-....-.+.+.+.+
T Consensus       188 li~~~~l~~--mk~gailIN~aRG~vVde~AL~~aL  221 (381)
T PRK00257        188 LLDEAFLAS--LRPGAWLINASRGAVVDNQALREAL  221 (381)
T ss_pred             cCCHHHHhc--CCCCeEEEECCCCcccCHHHHHHHH
Confidence            4432  244  7899999998754332234444444

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.61  E-value=1.3e-07  Score=85.38  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~   82 (275)
                      ....++|||||+|+||+.+|+.|...|.+|.+||+.....   ... ....+++++ +++||+|++++|-..     +..
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~-~~~~~L~el-l~~sDiI~lh~PLt~~g~~~T~~  187 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDE-GDFRSLDEL-VQEADILTFHTPLFKDGPYKTLH  187 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccc-cccCCHHHH-HhhCCEEEEeCCCCCCccccccc
Confidence            3567899999999999999999999999999999754211   111 123578886 589999999999543     333


Q ss_pred             Hhh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           83 VLN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        83 v~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      ++. +. ..  +++|+++++++--...-.+.+.+.+
T Consensus       188 li~~~~l~~--mk~gailIN~aRG~vVDe~AL~~aL  221 (378)
T PRK15438        188 LADEKLIRS--LKPGAILINACRGAVVDNTALLTCL  221 (378)
T ss_pred             ccCHHHHhc--CCCCcEEEECCCchhcCHHHHHHHH
Confidence            432 22 44  7899999998743222223444444

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.60  E-value=4.3e-07  Score=71.92  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....+++.|+|+|.+|..+|+.|+..|.+|++++++|. ...|...|..+. +.+++ +..+|++|.+|....+  .+-+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a-~~~adi~vtaTG~~~vi~~e~~   97 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEA-LRDADIFVTATGNKDVITGEHF   97 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHH-TTT-SEEEE-SSSSSSB-HHHH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHH-HhhCCEEEECCCCccccCHHHH
Confidence            34567899999999999999999999999999999994 456777888775 57776 5899999999887542  4555


Q ss_pred             hcCCCCCCCCCcEEEeCCCCChhH-HHHHHh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKEYP-RNVLLQ  114 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~~~-~~~l~~  114 (275)
                      +.     +++++++.++++...++ ++.+.+
T Consensus        98 ~~-----mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   98 RQ-----MKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HH-----S-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HH-----hcCCeEEeccCcCceeEeeccccc
Confidence            55     57799999999866543 234443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.59  E-value=2.1e-07  Score=82.45  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....++|||||+|.+|+.+|+.++..|.+|.+|||.....   ..+... .+++++ +++||+|++++|-. .+..++.+
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~-~~l~el-l~~sDvv~lh~Plt~~T~~li~~  216 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYER-VSLEEL-LKTSDIISIHAPLNEKTKNLIAY  216 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCcee-ecHHHH-hhcCCEEEEeCCCCchhhcccCH
Confidence            4577899999999999999999999999999999864211   123333 478886 58999999999964 34455543


Q ss_pred             C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897           87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE  119 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~  119 (275)
                      =  ..  ++++.++++++--...-.+.+.+.|..+
T Consensus       217 ~~~~~--Mk~~a~lIN~aRG~vVDe~AL~~AL~~g  249 (311)
T PRK08410        217 KELKL--LKDGAILINVGRGGIVNEKDLAKALDEK  249 (311)
T ss_pred             HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            2  44  8899999998743222223454544433

>PLN02306 hydroxypyruvate reductase

Probab=98.56  E-value=1.3e-06  Score=79.28  Aligned_cols=93  Identities=16%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChhhhHH---HHcC------------ceEecChHHHhccCCCEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDHSQLC---HRSG------------ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~~~~a---~~~g------------~~~~~~~~~~~~~~aD~i   71 (275)
                      ....++|||||+|.+|+.+|+.+. ..|.+|.+||+.......   ...|            .....+++++ +++||+|
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el-l~~sDiV  240 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV-LREADVI  240 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH-HhhCCEE
Confidence            456789999999999999999986 678999999987631111   1111            1223578896 5899999


Q ss_pred             EEecCch-hHHHHhhcC--CCCCCCCCcEEEeCCC
Q 023897           72 LISTSIL-SLSEVLNSL--PVHCLQRRTLIADVLS  103 (275)
Q Consensus        72 ilavp~~-~~~~v~~~l--~~~~l~~~~iv~d~~s  103 (275)
                      ++++|-. .+..++..=  ..  +++|.++++++-
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~--MK~ga~lIN~aR  273 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLAL--MKKEAVLVNASR  273 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHh--CCCCeEEEECCC
Confidence            9999954 455555432  44  899999999873

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.54  E-value=2.5e-07  Score=82.05  Aligned_cols=102  Identities=11%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....++|||||+|.+|+.+|+.++..|.+|.+|++......    ... ..+++++ +++||+|++++|-. .+..++.+
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~----~~~-~~~l~el-l~~sDiv~l~~Plt~~T~~li~~  217 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVC----REG-YTPFEEV-LKQADIVTLHCPLTETTQNLINA  217 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccc----ccc-cCCHHHH-HHhCCEEEEcCCCChHHhcccCH
Confidence            45678999999999999999999999999999998642110    111 3478886 58999999999953 45555543


Q ss_pred             C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      =  ..  +++|.++++++--.....+.+.+.+.
T Consensus       218 ~~l~~--mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        218 ETLAL--MKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             HHHHh--CCCCeEEEECCCccccCHHHHHHHHH
Confidence            2  44  88999999987433222334544443

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.51  E-value=3.1e-06  Score=72.85  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~   86 (275)
                      +.++|+|||+|.=|.+=|..|+++|.+|++--|...  -+.|.+.|..+. +.+++ ++++|+|++-+|+..-.++.+ +
T Consensus        17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea-~k~ADvim~L~PDe~q~~vy~~~   94 (338)
T COG0059          17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEA-AKRADVVMILLPDEQQKEVYEKE   94 (338)
T ss_pred             cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHH-hhcCCEEEEeCchhhHHHHHHHH
Confidence            567999999999999999999999999887766653  467888899875 56675 599999999999999999998 7


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCC-Cc--CCccccceeeeeeecCChHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES-GQ--NGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                      + |.  +++|..+.=.-+.. .....+.  -|.++.++=..|=.+... ..  ..-.|.|.++.-..-.+..+.+.....
T Consensus        95 I~p~--Lk~G~aL~FaHGfN-ihf~~i~--ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~  169 (338)
T COG0059          95 IAPN--LKEGAALGFAHGFN-IHFGLIV--PPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY  169 (338)
T ss_pred             hhhh--hcCCceEEeccccc-eecceec--CCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence            7 88  88887654211111 0011111  134455554444222211 00  011467776654322355677888888


Q ss_pred             HHHcCC---eEEEcC
Q 023897          163 FESEGC---KMLEMS  174 (275)
Q Consensus       163 ~~~~G~---~v~~~~  174 (275)
                      .+.+|+   -++..+
T Consensus       170 AkgiGg~RaGvieTT  184 (338)
T COG0059         170 AKGIGGTRAGVIETT  184 (338)
T ss_pred             HHhcCCCccceEeee
Confidence            999883   355543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.50  E-value=3.4e-07  Score=81.32  Aligned_cols=101  Identities=10%  Similarity=0.126  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....++|||||+|.+|+.+|+.++..|.+|.+|+|.....     ... ..+++++ +++||+|++++|-. .+..++.+
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-----~~~-~~~l~el-l~~sDiv~l~lPlt~~T~~li~~  217 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-----RPD-RLPLDEL-LPQVDALTLHCPLTEHTRHLIGA  217 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-----ccc-ccCHHHH-HHhCCEEEECCCCChHHhcCcCH
Confidence            4567899999999999999999999999999999864211     111 2378886 58999999999964 45555543


Q ss_pred             C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      -  ..  ++++.++++++--.....+.+.+.+.
T Consensus       218 ~~~~~--mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        218 RELAL--MKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             HHHhc--CCCCeEEEECCCccccCHHHHHHHHH
Confidence            2  44  88999999987432222234444443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.47  E-value=1.4e-06  Score=76.98  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=61.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HHH---------c--CceEecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CHR---------S--GISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~~---------~--g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+|.||..+|..++..|+ +|+++|+++....  +.+         .  .+..+++.++ + .++|+||+|++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~-~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-T-ANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-h-CCCCEEEEcCCC
Confidence            699999999999999999999886 8999999765322  111         0  1234567776 3 899999999883


Q ss_pred             ----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 ----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                      ..+.++++++ ++   .++.+++.+++
T Consensus        80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~---~p~~~iIv~tN  119 (305)
T TIGR01763        80 PRKPGMSREDLLSMNAGIVREVTGRIMEH---SPNPIIVVVSN  119 (305)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence                            2345566666 43   35556665554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.46  E-value=1.4e-06  Score=77.09  Aligned_cols=88  Identities=19%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HHH-------cC--ce--EecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CHR-------SG--IS--FFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~~-------~g--~~--~~~~~~~~~~~~aD~iilavp   76 (275)
                      ++||+|||+|.||..+|..++..|+ +|+++|++++...  +.+       .+  .+  .+++.++  +++||+||+++.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~--~~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED--IAGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH--HCCCCEEEECCC
Confidence            4799999999999999999999876 9999999874321  111       11  12  2355654  389999999963


Q ss_pred             --c--------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 --I--------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 --~--------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                        .              ..+.+++..+ +.  . ++.+++.+++
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~--~-~~~~viv~tN  120 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKY--A-PDAIVIVVTN  120 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH--C-CCeEEEEecC
Confidence              2              2356666666 44  3 4455555443

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=98.46  E-value=4.3e-05  Score=65.01  Aligned_cols=129  Identities=16%  Similarity=0.232  Sum_probs=94.4

Q ss_pred             CceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCC
Q 023897           53 GISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMF  129 (275)
Q Consensus        53 g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~  129 (275)
                      |+++++|-.|+ ++++|++|+-+|... ..++++++ ++  +++|.+++..+++....+..+-+.++ .++.+.+.||-+
T Consensus       126 GvkVtsDD~EA-v~~aei~I~ftPfG~~q~~Iikkii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa  202 (340)
T TIGR01723       126 GLKVTTDDREA-VEDADIIITWLPKGNKQPDIIKKFIDD--IPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC  202 (340)
T ss_pred             CceEecCcHHH-hcCCCEEEEEcCCCCCchHHHHHHHhh--CCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence            55677776776 599999999999876 57888888 87  99999999999888765555444444 567888999977


Q ss_pred             CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897          130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT  191 (275)
Q Consensus       130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~  191 (275)
                      -|+.     .++.++...  -.+++.++++.+|.++.|..+|.++++-..-+.-..|.++..
T Consensus       203 VPgt-----~~q~Yi~eg--yAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv  257 (340)
T TIGR01723       203 VPEM-----KGQVYIAEG--YASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAI  257 (340)
T ss_pred             CCCC-----CCceEeecc--cCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHH
Confidence            7764     344455432  247899999999999999999999865333333344444443

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.44  E-value=1.1e-06  Score=66.45  Aligned_cols=75  Identities=23%  Similarity=0.448  Sum_probs=61.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVL   84 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~   84 (275)
                      +||+|||+|.+|......+.+.  +.+|. ++|++++.  ..+.+.|+..+++.++++ +  +.|+|++|+|+....+++
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~I~tp~~~h~~~~   79 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELL-ADEDVDAVIIATPPSSHAEIA   79 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHH-HHTTESEEEEESSGGGHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHH-HhhcCCEEEEecCCcchHHHH
Confidence            5899999999999999999887  35655 68999853  346778999999999864 4  689999999999887777


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ...
T Consensus        80 ~~~   82 (120)
T PF01408_consen   80 KKA   82 (120)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=98.44  E-value=1.3e-06  Score=77.13  Aligned_cols=107  Identities=19%  Similarity=0.299  Sum_probs=76.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      .+..++|+|+|+|+||..+|+.|...|..+..+.|++. .+.+.+.+.. ..+.++. +.++|+|++|.|-. .+..+++
T Consensus       159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~-~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEEL-LANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             cccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHH-HhhCCEEEEecCCCHHHHHHhh
Confidence            45778999999999999999999998856666777664 4455555554 3466775 58999999999975 4566665


Q ss_pred             cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897           86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE  118 (275)
Q Consensus        86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~  118 (275)
                      +-  ..  ++++.++++++--+-.--+.+.+.+++
T Consensus       237 k~~~~~--mk~g~vlVN~aRG~iide~~l~eaL~s  269 (336)
T KOG0069|consen  237 KKFIEK--MKDGAVLVNTARGAIIDEEALVEALKS  269 (336)
T ss_pred             HHHHHh--cCCCeEEEeccccccccHHHHHHHHhc
Confidence            33  44  789999998874333223455555543

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=98.42  E-value=5.9e-05  Score=64.08  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=93.8

Q ss_pred             CceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCC
Q 023897           53 GISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMF  129 (275)
Q Consensus        53 g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~  129 (275)
                      |+++++|-.|+ ++++|++|+-+|... ...+++++ ++  +++|.+|+..+++....+..+-+.++ .++.+.+.||-+
T Consensus       128 GvkVtsDD~EA-vk~aei~I~ftPfG~~t~~Iikki~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREA-VADADIVITWLPKGGMQPDIIEKFADD--IKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHH-hcCCCEEEEecCCCCCchHHHHHHHhh--CCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            55677776675 599999999999876 57888888 87  99999999999888766554433343 567888999987


Q ss_pred             CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897          130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT  191 (275)
Q Consensus       130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~  191 (275)
                      -|+..     |+.++-.  .-.+++.++++.+|.++.|..+|.++++-..-+.-..|.++..
T Consensus       205 VPgt~-----Gq~~i~e--gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv  259 (342)
T PRK00961        205 VPEMK-----GQVYIAE--GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAI  259 (342)
T ss_pred             CCCCC-----Cceeccc--ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH
Confidence            77653     4433322  1247889999999999999999999865433333344444443

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.41  E-value=2.6e-06  Score=75.72  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HH----H---cC----ceEecChHHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CH----R---SG----ISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~----~---~g----~~~~~~~~~~~~~~aD~iil   73 (275)
                      +...+||+|||+|.||.++|..++..|+ +|+++|++++...  +.    .   .+    +..+++.++  +++||+||+
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~--l~~aDiVI~   80 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED--IAGSDVVIV   80 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH--hCCCCEEEE
Confidence            4456799999999999999999999995 8999999885321  11    1   11    233456655  389999999


Q ss_pred             ecCc---------------------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecC
Q 023897           74 STSI---------------------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTH  126 (275)
Q Consensus        74 avp~---------------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~h  126 (275)
                      +.-.                     ..+.++.+.+ .+   .++.+++.+++.-......+.+..+. ..++++.+
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~---~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY---CPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            7621                     1245566666 43   34545555554333333444444321 23566654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.4e-06  Score=76.00  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|+|||.| .||..||..|.++|+.|++|++..             .+++++ +++||+||.|++....   +.
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~-~~~ADIVIsavg~~~~---v~  217 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKAL-CRQADIVVAAVGRPRL---ID  217 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHH-HhcCCEEEEecCChhc---cc
Confidence            34567899999995 999999999999999999998763             256665 4899999999997632   22


Q ss_pred             cCCCCCCCCCcEEEeCCC
Q 023897           86 SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s  103 (275)
                      .. .  +++|++++|++-
T Consensus       218 ~~-~--ik~GaiVIDvgi  232 (301)
T PRK14194        218 AD-W--LKPGAVVIDVGI  232 (301)
T ss_pred             Hh-h--ccCCcEEEEecc
Confidence            21 2  688999999873

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.37  E-value=5.4e-06  Score=68.76  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=62.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCchh-HHHH
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEV   83 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v   83 (275)
                      .+...++|+|+|+|+||+.+|+.|.+.|++|+++|++++ .. .....|....+. +++...++|+++-|..... ..+.
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~  102 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDT  102 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHH
Confidence            456778999999999999999999999999999999985 33 333446665444 4433347999997765543 3455


Q ss_pred             hhcCCCCCCCCCcEEEeCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.++     + ..+|++.++
T Consensus       103 ~~~l-----~-~~~v~~~AN  116 (200)
T cd01075         103 IPQL-----K-AKAIAGAAN  116 (200)
T ss_pred             HHHc-----C-CCEEEECCc
Confidence            5554     2 246666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.36  E-value=2.2e-06  Score=76.02  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-h-hHHHHcCceEe--cChHHHhccCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-S-QLCHRSGISFF--SDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~-~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ...++|+|||+|.||..+++.|...| .+|++++|+++ . ..+.+.|....  .+..+. +.++|+||.|+|.....++
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~-l~~aDvVi~at~~~~~~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLEL-LNEADVVISATGAPHYAKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHH-HhcCCEEEECCCCCchHHH
Confidence            35689999999999999999999866 68999999985 2 45666666432  234554 4789999999998766444


Q ss_pred             hhcC-CCCCCCCCcEEEeCC
Q 023897           84 LNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~  102 (275)
                      +... .. ...++.+++|++
T Consensus       255 ~~~~~~~-~~~~~~~viDla  273 (311)
T cd05213         255 VERAMKK-RSGKPRLIVDLA  273 (311)
T ss_pred             HHHHHhh-CCCCCeEEEEeC
Confidence            4444 22 023567899987

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.34  E-value=2.2e-06  Score=65.29  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             eEEEEc-CChHHHHHHHHHHHC-CCeEEEE-cCChhh-h-HHHHcC-ce------Ee-cChHHHhccCCCEEEEecCchh
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQ-GHILRAT-SRTDHS-Q-LCHRSG-IS------FF-SDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~-g~~V~~~-dr~~~~-~-~a~~~g-~~------~~-~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ||+|+| .|.+|..++..|.+. ++++..+ +++.+. + .....+ +.      .. .+++   ..++|+||+|+|++.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~DvV~~~~~~~~   77 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE---ELAVDIVFLALPHGV   77 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh---hcCCCEEEEcCCcHH
Confidence            689999 599999999999985 7777765 554321 1 121111 11      11 1221   148999999999999


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCC
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      ..+++..+ +.  +.+|++++|+++.-
T Consensus        78 ~~~~~~~~~~~--~~~g~~viD~s~~~  102 (122)
T smart00859       78 SKEIAPLLPKA--AEAGVKVIDLSSAF  102 (122)
T ss_pred             HHHHHHHHHhh--hcCCCEEEECCccc
Confidence            88877655 44  67899999998753

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.33  E-value=4.3e-06  Score=74.38  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhhh--HHHH-------cC----ceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHSQ--LCHR-------SG----ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~~--~a~~-------~g----~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..+||+|||+|.||.+++..+...| .+|.++|++++..  .+.+       .+    +..+++.++  +++||+||++.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~--l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED--IKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH--hCCCCEEEECC
Confidence            4579999999999999999999988 6899999987431  1111       11    123356664  38999999998


Q ss_pred             --Cc--------------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecC
Q 023897           76 --SI--------------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTH  126 (275)
Q Consensus        76 --p~--------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~h  126 (275)
                        |.              ..+.++.+.+ .+   .++.+++.+++.-......+.+..+. ..++++.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~---~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKY---CPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              32              2355666666 43   45555555544323333344443221 23566544

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.29  E-value=4.6e-06  Score=65.21  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------c--CceEecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------S--GISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~--g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+ |.+|+++|..|...+.  ++.++|+++...  .+.+       .  ......+..+. ++++|+|+++...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEA-LKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGG-GTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccc-cccccEEEEeccc
Confidence            79999999 9999999999999875  899999997421  2211       1  12333333443 4899999999744

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.29  E-value=3.5e-06  Score=77.76  Aligned_cols=92  Identities=10%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-   85 (275)
                      ....++|+|||+|.+|..+|+.++..|.+|+++++++.. ..+...|+.. .+++++ ++.+|+|++|+...   .++. 
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leel-l~~ADIVI~atGt~---~iI~~  325 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDV-VETADIFVTATGNK---DIITL  325 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHH-HhcCCEEEECCCcc---cccCH
Confidence            456789999999999999999999999999999998753 3445567754 367775 58999999998643   3332 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCCh
Q 023897           86 SL-PVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~  106 (275)
                      +. ..  ++++.++++++-...
T Consensus       326 e~~~~--MKpGAiLINvGr~d~  345 (476)
T PTZ00075        326 EHMRR--MKNNAIVGNIGHFDN  345 (476)
T ss_pred             HHHhc--cCCCcEEEEcCCCch
Confidence            22 33  788999999886543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.23  E-value=5.4e-06  Score=63.05  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCC-Ce-EEEEcCCh-h-hhHHHHc----C---ceEec-ChHHHhccCCCEEEEecCchh
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQG-HI-LRATSRTD-H-SQLCHRS----G---ISFFS-DKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g-~~-V~~~dr~~-~-~~~a~~~----g---~~~~~-~~~~~~~~~aD~iilavp~~~   79 (275)
                      ||+||| +|.+|+.+.+.|.+.- ++ +.+++++. . .......    +   ..+.. +.++  +.++|+||+|+|...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dvvf~a~~~~~   78 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE--LSDVDVVFLALPHGA   78 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH--HTTESEEEE-SCHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH--hhcCCEEEecCchhH
Confidence            799999 8999999999999953 35 44566665 2 2222221    1   12322 4444  389999999999998


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ..++...+    +.+|..++|.++.
T Consensus        79 ~~~~~~~~----~~~g~~ViD~s~~   99 (121)
T PF01118_consen   79 SKELAPKL----LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHHHHHH----HHTTSEEEESSST
T ss_pred             HHHHHHHH----hhCCcEEEeCCHH
Confidence            88888887    4568899998864

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=6.7e-06  Score=71.83  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEc-CChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATS-RTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~d-r~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ....++|+||| .|.||..||..|.++|+.|++|+ |++              +++++ +++||+||.|++...   .+.
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~-~~~ADIVIsavg~~~---~v~  216 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAV-CRRADILVAAVGRPE---MVK  216 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHH-HhcCCEEEEecCChh---hcc
Confidence            45678999999 99999999999999999999995 653              34564 489999999999865   222


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      .. .  +++|++++|++..
T Consensus       217 ~~-~--lk~GavVIDvGin  232 (296)
T PRK14188        217 GD-W--IKPGATVIDVGIN  232 (296)
T ss_pred             hh-e--ecCCCEEEEcCCc
Confidence            22 2  6889999999853

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.21  E-value=4.5e-06  Score=73.65  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      +++||+|||+|+||...+..+.+. +.++.+ +++++........+.....+..+. ..+.|+|++|+|.....+..
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~-l~~iDVViIctPs~th~~~~   77 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKH-LDDVDVLILCMGSATDIPEQ   77 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHh-ccCCCEEEEcCCCccCHHHH
Confidence            358999999999999999999876 678775 788862222223344344566564 47899999999986544333

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.19  E-value=1.7e-05  Score=72.71  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~   86 (275)
                      ....+|+|+|+|.+|..+|..++..|.+|+++|+++.. ..+...|... .+.+++ ++.+|+||.|+....   ++. +
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~ea-l~~aDVVI~aTG~~~---vI~~~  284 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEA-AELGDIFVTATGNKD---VITAE  284 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHH-HhCCCEEEECCCCHH---HHHHH
Confidence            35678999999999999999999999999999999853 4455557764 356775 589999999987543   232 2


Q ss_pred             C-CCCCCCCCcEEEeCCCCCh
Q 023897           87 L-PVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~  106 (275)
                      . ..  +++|.++++++....
T Consensus       285 ~~~~--mK~GailiNvG~~d~  303 (425)
T PRK05476        285 HMEA--MKDGAILANIGHFDN  303 (425)
T ss_pred             HHhc--CCCCCEEEEcCCCCC
Confidence            2 33  688999999886554

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.18  E-value=1.2e-05  Score=70.23  Aligned_cols=93  Identities=19%  Similarity=0.176  Sum_probs=69.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChh---hhHHHHcCceE-ecChHHHhc----cCCCEEEEecCch
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDH---SQLCHRSGISF-FSDKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~---~~~a~~~g~~~-~~~~~~~~~----~~aD~iilavp~~   78 (275)
                      +.++||+|||+|.+|+.+...+.+. +.++. ++|++++   .+.+.+.|+.. +++.++++.    .+.|+||+++|..
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            4568999999999999988777764 45665 5788874   24677788865 467887542    3579999999998


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      ...+.....    ...|..++|.++..
T Consensus        82 ~H~e~a~~a----~eaGk~VID~sPA~  104 (302)
T PRK08300         82 AHVRHAAKL----REAGIRAIDLTPAA  104 (302)
T ss_pred             HHHHHHHHH----HHcCCeEEECCccc
Confidence            887777766    45578888876543

>PLN02494 adenosylhomocysteinase

Probab=98.18  E-value=1.5e-05  Score=73.47  Aligned_cols=89  Identities=12%  Similarity=0.175  Sum_probs=69.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHhh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVLN   85 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~~   85 (275)
                      ...++|+|+|+|.+|..+|+.++..|.+|+++++++. ...+...|.... +.+++ +..+|+||.++....+  .+.+.
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEa-l~~ADVVI~tTGt~~vI~~e~L~  329 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDV-VSEADIFVTTTGNKDIIMVDHMR  329 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHH-HhhCCEEEECCCCccchHHHHHh
Confidence            4568999999999999999999999999999999985 356666777654 56775 4899999998876532  33333


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                         .  ++++.+++.++..
T Consensus       330 ---~--MK~GAiLiNvGr~  343 (477)
T PLN02494        330 ---K--MKNNAIVCNIGHF  343 (477)
T ss_pred             ---c--CCCCCEEEEcCCC
Confidence               3  6788999998763

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.16  E-value=2e-05  Score=71.85  Aligned_cols=90  Identities=11%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS-   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~-   86 (275)
                      ....+|+|+|+|.+|..+|+.++..|.+|+++++++. ...+...|..+. +.+++ ++.+|++|.++....+   +.. 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leea-l~~aDVVItaTG~~~v---I~~~  267 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEA-AKIGDIFITATGNKDV---IRGE  267 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHH-HhcCCEEEECCCCHHH---HHHH
Confidence            4677999999999999999999999999999999985 345566677554 45665 4899999999876443   221 


Q ss_pred             C-CCCCCCCCcEEEeCCCCC
Q 023897           87 L-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k  105 (275)
                      . ..  +++|.+++.++...
T Consensus       268 ~~~~--mK~GailiN~G~~~  285 (406)
T TIGR00936       268 HFEN--MKDGAIVANIGHFD  285 (406)
T ss_pred             HHhc--CCCCcEEEEECCCC
Confidence            2 33  78889999877543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.16  E-value=8.8e-06  Score=72.05  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=47.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhh--HHHHc--C------ce-EecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQ--LCHRS--G------IS-FFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~--~a~~~--g------~~-~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+|.+|+++|..|+.+|  .+|.++|+++...  .+.+.  .      .. .+.+.++  +++||++|+|++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~--l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD--CKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH--hCCCCEEEEccCC
Confidence            68999999999999999999999  5899999987421  11111  1      11 2345554  3899999999886

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.15  E-value=1.6e-05  Score=60.77  Aligned_cols=100  Identities=19%  Similarity=0.317  Sum_probs=65.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHH-CCCeEE-EEcCChh-h---hHH-----HHcCceEecChHHHhccCCCEEEEecCchh
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIK-QGHILR-ATSRTDH-S---QLC-----HRSGISFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~dr~~~-~---~~a-----~~~g~~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      |||+|+|+ |+||+.+++.+.+ .++++. +++++++ .   ...     ...|+.++++++++ ...+|++|-.+-++.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~-~~~~DVvIDfT~p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEEL-LEEADVVIDFTNPDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHH-TTH-SEEEEES-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHh-cccCCEEEEcCChHH
Confidence            69999999 9999999999999 577866 4787762 1   111     23466788899886 577999999998887


Q ss_pred             HHHHhhcCCCCCCCCCc-EEEeCCCCChhHHHHHHhhC
Q 023897           80 LSEVLNSLPVHCLQRRT-LIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~-iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +.+.++..    ++.+. +|+-+++....-.+.+++..
T Consensus        80 ~~~~~~~~----~~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   80 VYDNLEYA----LKHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             HHHHHHHH----HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             hHHHHHHH----HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence            77777776    22233 44444444444445566543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.15  E-value=1.7e-05  Score=73.22  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CeEEEEcCChHHHHHHH--HH----HHCCCeEEEEcCChhh-hHH--------HHc----CceEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPFGQFLAK--TM----IKQGHILRATSRTDHS-QLC--------HRS----GISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~--~L----~~~g~~V~~~dr~~~~-~~a--------~~~----g~~~~~~~~~~~~~~aD~ii   72 (275)
                      +||+|||+|.||.+++.  .+    ...|++|.+||++++. +..        ...    .+..+++..++ +++||+||
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea-l~~AD~Vi   79 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREA-LDGADFVI   79 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH-hcCCCEEE
Confidence            58999999999998766  34    3457899999999852 111        111    23467788776 48999999


Q ss_pred             EecCchh
Q 023897           73 ISTSILS   79 (275)
Q Consensus        73 lavp~~~   79 (275)
                      .++|...
T Consensus        80 ~ai~~~~   86 (423)
T cd05297          80 NTIQVGG   86 (423)
T ss_pred             EeeEecC
Confidence            9999643

linked to 3D####ucture

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.15  E-value=1.2e-05  Score=71.06  Aligned_cols=61  Identities=21%  Similarity=0.201  Sum_probs=44.8

Q ss_pred             EEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHH--H---H----c----CceEecChHHHhccCCCEEEEecC
Q 023897           14 IGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLC--H---R----S----GISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a--~---~----~----g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |+|||+|.||..+|..++..|+ +|+++|++++...+  .   .    .    .+..+++.++  +++||+||+++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~--l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED--IAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH--hCCCCEEEEecC
Confidence            6899999999999999998876 99999998753211  1   1    1    1123455555  389999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.15  E-value=5.5e-06  Score=72.00  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHH---cCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHR---SGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~---~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ..+++.|+|+|.+|.+++..|.+.|++|++++|+++.  ..+..   .+.....+.++....++|+||.|+|.....++-
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~  195 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID  195 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence            3568999999999999999999999999999999742  22222   122112233332235799999999985322111


Q ss_pred             h-cCCCCCCCCCcEEEeCCCCC
Q 023897           85 N-SLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        85 ~-~l~~~~l~~~~iv~d~~s~k  105 (275)
                      . .++...++++.+++|+....
T Consensus       196 ~~~~~~~~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       196 EPPVPAEKLKEGMVVYDMVYNP  217 (270)
T ss_pred             CCCCCHHHcCCCCEEEEeccCC
Confidence            1 11111167788999987543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.14  E-value=2.1e-05  Score=69.61  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=59.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhh--HHHH---------cCceE-ecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQ--LCHR---------SGISF-FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~--~a~~---------~g~~~-~~~~~~~~~~~aD~iilavp~   77 (275)
                      +||+|||+|.+|+++|..|...|  ++|+++|++++..  .+.+         ..... ..+.++  +.++|+||+++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~--l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD--CKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH--hCCCCEEEEccCC
Confidence            48999999999999999999998  5899999987532  2221         11122 234444  3899999999876


Q ss_pred             h----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 L----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                .+.++...+ .+   .++.+++.+++
T Consensus        79 ~~~~g~~R~dll~~N~~i~~~~~~~i~~~---~~~~~vivvsN  118 (306)
T cd05291          79 PQKPGETRLDLLEKNAKIMKSIVPKIKAS---GFDGIFLVASN  118 (306)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence            2                245555566 43   34556665553

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.14  E-value=6.5e-06  Score=74.31  Aligned_cols=76  Identities=17%  Similarity=0.227  Sum_probs=57.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-hhHHHHc---Cce-------EecChHHHhccCCCEEEEecCch
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-SQLCHRS---GIS-------FFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~~~a~~~---g~~-------~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      +|||.|||+|.+|+..|..|++.| .+|++.||+.+ +..+...   +++       -...+.++ +++.|+||.|.|+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d~VIn~~p~~   79 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFDLVINAAPPF   79 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCCEEEEeCCch
Confidence            589999999999999999999998 89999999974 4433332   121       11234454 47889999999998


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      ....+++..
T Consensus        80 ~~~~i~ka~   88 (389)
T COG1748          80 VDLTILKAC   88 (389)
T ss_pred             hhHHHHHHH
Confidence            777766543

>PLN02602 lactate dehydrogenase

Probab=98.11  E-value=2.9e-05  Score=69.77  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=46.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------cC-ceEe--cChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------SG-ISFF--SDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~g-~~~~--~~~~~~~~~~aD~iilavp   76 (275)
                      +||+|||+|.+|+++|..|...+.  ++.++|++++..  .+.+       .+ ..+.  .+.++  +++||+||++..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~--~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV--TAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH--hCCCCEEEECCC
Confidence            699999999999999999998875  799999987432  1111       11 2332  35555  389999999944

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=9.1e-06  Score=68.65  Aligned_cols=76  Identities=24%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH--HHHcCceE----ecC---hHHHhccCCCEEEEecCchhHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL--CHRSGISF----FSD---KRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~--a~~~g~~~----~~~---~~~~~~~~aD~iilavp~~~~~   81 (275)
                      |+|.|||+|.+|+++|+.|.+.|++|++.|++++ ...  +.+.+..+    .++   +.++-+.++|+++.++..+...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N   80 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN   80 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence            7899999999999999999999999999999985 333  22344321    122   2332247899999999998766


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      .++-.+
T Consensus        81 ~i~~~l   86 (225)
T COG0569          81 SVLALL   86 (225)
T ss_pred             HHHHHH
Confidence            666555

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.10  E-value=3.2e-05  Score=68.51  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH----c------CceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR----S------GISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~----~------g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..+||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+    .      .+..+.+.++ + ++||+||++.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~-~~adivvita   79 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T-ANSKVVIVTA   79 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h-CCCCEEEECC
Confidence            35699999999999999999998875  799999987421  1111    0      1233356666 3 8999999965


Q ss_pred             C
Q 023897           76 S   76 (275)
Q Consensus        76 p   76 (275)
                      .
T Consensus        80 G   80 (312)
T cd05293          80 G   80 (312)
T ss_pred             C
Confidence            4

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.08  E-value=3.6e-05  Score=70.43  Aligned_cols=90  Identities=11%  Similarity=0.163  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS-   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~-   86 (275)
                      ....+|+|+|+|.+|..++..++..|.+|+++|+++. ...+...|.... +.+++ +..+|+||.|+....+..  .. 
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~-v~~aDVVI~atG~~~~i~--~~~  275 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEA-VKEGDIFVTTTGNKDIIT--GEH  275 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHH-HcCCCEEEECCCCHHHHH--HHH
Confidence            3567999999999999999999999999999999985 567788888654 45564 478999999987654221  12 


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                      +..  +++|.+++.++..
T Consensus       276 l~~--mk~GgilvnvG~~  291 (413)
T cd00401         276 FEQ--MKDGAIVCNIGHF  291 (413)
T ss_pred             Hhc--CCCCcEEEEeCCC
Confidence            233  6788899887743

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.08  E-value=1.2e-05  Score=71.44  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHHH---cC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCHR---SG--ISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~~---~g--~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ...+|+|||+|.+|..++..+.. .+ .+|++|+|+++.  ..+.+   .|  +....+++++ +.++|+|+.|+|..  
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~a-v~~aDIVi~aT~s~--  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAA-VRQADIISCATLST--  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHH-HhcCCEEEEeeCCC--
Confidence            45789999999999999986665 34 689999999852  23332   24  4566788876 48999999988865  


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..++.. ..  +++|+.+.-+++
T Consensus       201 ~pvl~~-~~--l~~g~~i~~ig~  220 (314)
T PRK06141        201 EPLVRG-EW--LKPGTHLDLVGN  220 (314)
T ss_pred             CCEecH-HH--cCCCCEEEeeCC
Confidence            222211 12  677775544443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.08  E-value=4e-05  Score=66.10  Aligned_cols=99  Identities=22%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEE-EcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRA-TSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~-~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      +|||+|+|+ |.||+.++..+.+. ++++.+ +|++++. ......++..+++++++ +.++|+|+.++|++...+++..
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~l-l~~~DvVid~t~p~~~~~~~~~   79 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAV-LADADVLIDFTTPEATLENLEF   79 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHh-ccCCCEEEECCCHHHHHHHHHH
Confidence            479999998 99999999998864 677664 7887642 22234466667888886 4689999999999888777776


Q ss_pred             CCCCCCCCCc-EEEeCCCCChhHHHHHHh
Q 023897           87 LPVHCLQRRT-LIADVLSVKEYPRNVLLQ  114 (275)
Q Consensus        87 l~~~~l~~~~-iv~d~~s~k~~~~~~l~~  114 (275)
                      .    +..|. +++-..+......+.+.+
T Consensus        80 a----l~~G~~vvigttG~s~~~~~~l~~  104 (257)
T PRK00048         80 A----LEHGKPLVIGTTGFTEEQLAELEE  104 (257)
T ss_pred             H----HHcCCCEEEECCCCCHHHHHHHHH
Confidence            6    22333 333333333434445554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.03  E-value=1.6e-05  Score=61.72  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChhh--hHHHHc---Cc--eEecChHHHhccCCCEEEEecCchh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDHS--QLCHRS---GI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~~--~~a~~~---g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      +....++.|||+|.+|++++..|.+.|.+ |++++|+.+.  +.+...   .+  ...+++.+. ..++|+||.|+|...
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~-~~~~DivI~aT~~~~   87 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEA-LQEADIVINATPSGM   87 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHH-HHTESEEEE-SSTTS
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHH-HhhCCeEEEecCCCC
Confidence            45678999999999999999999999985 9999999853  334443   22  233455554 479999999999864


Q ss_pred             H---HHHhhcCCCCCCCC-CcEEEeCC
Q 023897           80 L---SEVLNSLPVHCLQR-RTLIADVL  102 (275)
Q Consensus        80 ~---~~v~~~l~~~~l~~-~~iv~d~~  102 (275)
                      .   .+.+...     .+ -.+++|++
T Consensus        88 ~~i~~~~~~~~-----~~~~~~v~Dla  109 (135)
T PF01488_consen   88 PIITEEMLKKA-----SKKLRLVIDLA  109 (135)
T ss_dssp             TSSTHHHHTTT-----CHHCSEEEES-
T ss_pred             cccCHHHHHHH-----Hhhhhceeccc
Confidence            2   2222222     11 14899986

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.03  E-value=3.4e-05  Score=65.96  Aligned_cols=91  Identities=13%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC---CeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG---HILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .+||+|||+|.||..++..|.+.+   +++. +++|+++........+...+++++++....|+|+-|-..+.+.+....
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~   81 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEG   81 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHH
Confidence            479999999999999999997643   4544 577776432222223667788998545789999999999999988888


Q ss_pred             C-CCCCCCCCcEEEeCCCC
Q 023897           87 L-PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~  104 (275)
                      + ..   ..+.++.+++..
T Consensus        82 iL~~---g~dlvv~SvGAL   97 (267)
T PRK13301         82 CLTA---GLDMIICSAGAL   97 (267)
T ss_pred             HHhc---CCCEEEEChhHh
Confidence            7 31   345566666543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.02  E-value=5.5e-05  Score=67.14  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH--------cCceEe-cChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR--------SGISFF-SDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~--------~g~~~~-~~~~~~~~~~aD~iilav   75 (275)
                      ...+||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+        ....+. .+.++  +++||+||++.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~--~~~adivIita   81 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD--CKDADLVVITA   81 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH--hCCCCEEEEec
Confidence            455799999999999999999999886  899999987431  1111        122332 34444  38999999985


Q ss_pred             Cc
Q 023897           76 SI   77 (275)
Q Consensus        76 p~   77 (275)
                      ..
T Consensus        82 g~   83 (315)
T PRK00066         82 GA   83 (315)
T ss_pred             CC
Confidence            54

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.02  E-value=2.1e-05  Score=63.30  Aligned_cols=76  Identities=12%  Similarity=0.262  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCChH-HHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPF-GQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~m-G~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      +....+|.|||+|.| |..+++.|.+.|.+|++++|+.             .++.+. +.++|+||.||+...+   +..
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~-l~~aDiVIsat~~~~i---i~~  103 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEH-TKQADIVIVAVGKPGL---VKG  103 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHH-HhhCCEEEEcCCCCce---ecH
Confidence            456789999999997 8889999999999999999873             234443 4899999999998642   211


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  ++++.+++|++.
T Consensus       104 -~~--~~~~~viIDla~  117 (168)
T cd01080         104 -DM--VKPGAVVIDVGI  117 (168)
T ss_pred             -HH--ccCCeEEEEccC
Confidence             12  567889999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.01  E-value=3.2e-05  Score=63.96  Aligned_cols=100  Identities=21%  Similarity=0.353  Sum_probs=72.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      |+|+|||+|.+|..+...+.+.  .+ -+.+|||+.+.  ......+....+++++.+ .+.|+++-|-.++++++...+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~-~~~DlvVEaAS~~Av~e~~~~   79 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELI-AEVDLVVEAASPEAVREYVPK   79 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHh-hccceeeeeCCHHHHHHHhHH
Confidence            6899999999999999888765  34 46789999853  233334444447888864 899999999999999988877


Q ss_pred             C-CCCCCCCCcEEEeCCCCCh-hHHHHHHhh
Q 023897           87 L-PVHCLQRRTLIADVLSVKE-YPRNVLLQV  115 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~-~~~~~l~~~  115 (275)
                      + ..   ..+.++++++.... ...+.+.+.
T Consensus        80 ~L~~---g~d~iV~SVGALad~~l~erl~~l  107 (255)
T COG1712          80 ILKA---GIDVIVMSVGALADEGLRERLREL  107 (255)
T ss_pred             HHhc---CCCEEEEechhccChHHHHHHHHH
Confidence            7 31   34678888875442 233444444

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.00  E-value=3.1e-05  Score=67.11  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhhh-HH--HHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHSQ-LC--HRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~~-~a--~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      +|||+|||+|.||+.+++.+.+. +.++.+ ++++.... ..  ...++..+++.+++ ..+.|+|+.|+|+....+...
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~~e~~~   79 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAALKEHVV   79 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHHHHHHH
Confidence            47999999999999999999876 455544 44433211 11  12266778888875 467999999999988877777


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      ..
T Consensus        80 ~a   81 (265)
T PRK13303         80 PI   81 (265)
T ss_pred             HH
Confidence            66

>PRK04148 hypothetical protein; Provisional

Probab=97.99  E-value=4.5e-05  Score=58.64  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-----ecChHHHhccCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-----FSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-----~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      +.+||..||+| .|.++|..|++.|++|++.|.++. .+.+.+.+..+     ++..-+ +-+++|+|--.=|+..+..-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~-~y~~a~liysirpp~el~~~   93 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE-IYKNAKLIYSIRPPRDLQPF   93 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH-HHhcCCEEEEeCCCHHHHHH
Confidence            34789999999 999999999999999999999995 55666666532     222223 24799999999998776655


Q ss_pred             hhcC-CCCCCCCCcEEEeCCC
Q 023897           84 LNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +.++ ..  +..+.++.-.++
T Consensus        94 ~~~la~~--~~~~~~i~~l~~  112 (134)
T PRK04148         94 ILELAKK--INVPLIIKPLSG  112 (134)
T ss_pred             HHHHHHH--cCCCEEEEcCCC
Confidence            5555 33  455556665554

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=1.9e-05  Score=68.43  Aligned_cols=77  Identities=10%  Similarity=0.159  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|+|||. |.||..||..|.++|+.|++|...             +.++++. +++||+||.|++...+   +..
T Consensus       155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~-~~~ADIVI~avg~~~~---v~~  217 (284)
T PRK14179        155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEV-ARKADILVVAIGRGHF---VTK  217 (284)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHH-HhhCCEEEEecCcccc---CCH
Confidence            456789999998 999999999999999999999321             1256664 4899999999997653   221


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       218 -~~--ik~GavVIDvgin  232 (284)
T PRK14179        218 -EF--VKEGAVVIDVGMN  232 (284)
T ss_pred             -HH--ccCCcEEEEecce
Confidence             12  6889999999743

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.98  E-value=3.2e-05  Score=69.01  Aligned_cols=91  Identities=15%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh--hHH---HHcC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS--QLC---HRSG--ISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~--~~a---~~~g--~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ...+++|||+|.+|.+.+.++...  ..+|.+|||+++.  ..+   .+.|  +....+++++ ++++|+|+.|||... 
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~ea-v~~aDiVitaT~s~~-  204 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREA-VEGCDILVTTTPSRK-  204 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHH-hccCCEEEEecCCCC-
Confidence            346899999999999988777653  3589999999853  222   2345  3567888886 589999999998753 


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                       .++.. ..  +++|+.+..+++-+.
T Consensus       205 -P~~~~-~~--l~~g~~v~~vGs~~p  226 (325)
T TIGR02371       205 -PVVKA-DW--VSEGTHINAIGADAP  226 (325)
T ss_pred             -cEecH-HH--cCCCCEEEecCCCCc
Confidence             22211 12  678888888876543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.93  E-value=3.6e-05  Score=69.21  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEE-EcCChh-hhHHHHcC-c-----eEecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRA-TSRTDH-SQLCHRSG-I-----SFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~-~dr~~~-~~~a~~~g-~-----~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ++||+|||+ |.+|..+++.|.+. ++++.. ++++.. ...+...+ +     ....+.++....++|+||+|+|....
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~   81 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS   81 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence            479999996 99999999999876 567655 554332 11221111 1     01222222123689999999999988


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      .++...+    ...|..|+|.++-
T Consensus        82 ~~~v~~a----~~aG~~VID~S~~  101 (343)
T PRK00436         82 MDLAPQL----LEAGVKVIDLSAD  101 (343)
T ss_pred             HHHHHHH----HhCCCEEEECCcc
Confidence            8888876    4468899998864

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.91  E-value=0.00013  Score=63.23  Aligned_cols=99  Identities=23%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHC-CCeEEE-EcCCh-hh---hHHHH-----cCceEecChHHHhccCCCEEEEecCchh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQ-GHILRA-TSRTD-HS---QLCHR-----SGISFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~-g~~V~~-~dr~~-~~---~~a~~-----~g~~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      +||+|+| +|+||..+++.+.+. ++++.+ +||+. ..   .....     .|+..+++++++ ...+|+|+.++|+..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~~~DvVIdfT~p~~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ETDPDVLIDFTTPEG   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cCCCCEEEECCChHH
Confidence            7999999 699999999999864 677664 77543 21   11111     356677888885 457899999999998


Q ss_pred             HHHHhhcCCCCCCCCCc-EEEeCCCCChhHHHHHHhh
Q 023897           80 LSEVLNSLPVHCLQRRT-LIADVLSVKEYPRNVLLQV  115 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~-iv~d~~s~k~~~~~~l~~~  115 (275)
                      ..+.+...    +..|. +++-..+......+.+.+.
T Consensus        81 ~~~~~~~a----l~~g~~vVigttg~~~e~~~~l~~a  113 (266)
T TIGR00036        81 VLNHLKFA----LEHGVRLVVGTTGFSEEDKQELADL  113 (266)
T ss_pred             HHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHH
Confidence            88887776    22232 4443334433344555544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.90  E-value=1.9e-05  Score=72.93  Aligned_cols=92  Identities=22%  Similarity=0.294  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhH---
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSL---   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~---   80 (275)
                      ....+|+|||+|.||..++..|...|. +|++++|+++.  ..+.+.|...  ..+..+. +.++|+||.||+....   
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~-l~~aDvVI~aT~s~~~~i~  258 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEA-LAEADIVISSTGAPHPIIG  258 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHH-hccCCEEEECCCCCCcEEc
Confidence            455799999999999999999999997 89999999853  3555555432  2344454 4789999999986531   


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCC
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      .+.+... .. +-..+.+++|++
T Consensus       259 ~~~l~~~~~~-~~~~~~vviDla  280 (423)
T PRK00045        259 KGMVERALKA-RRHRPLLLVDLA  280 (423)
T ss_pred             HHHHHHHHhh-ccCCCeEEEEeC
Confidence            2333332 11 012456888886

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.90  E-value=5.3e-05  Score=67.96  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhh-h-HHHHc------------------CceEecChHHHhccCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHS-Q-LCHRS------------------GISFFSDKRAFLEADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~-~-~a~~~------------------g~~~~~~~~~~~~~~a   68 (275)
                      ++||+|+|+|+||+.+++.+.+. +++|.+ ++++++. . .+.+.                  ++.+..+.++. ..++
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el-~~~v   79 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL-LEKA   79 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh-hccC
Confidence            47999999999999999998865 567765 5655532 1 22222                  23444566664 4789


Q ss_pred             CEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        69 D~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |+||.|+|+....+.....    ++.|..+++.++.
T Consensus        80 DVVIdaT~~~~~~e~a~~~----~~aGk~VI~~~~~  111 (341)
T PRK04207         80 DIVVDATPGGVGAKNKELY----EKAGVKAIFQGGE  111 (341)
T ss_pred             CEEEECCCchhhHHHHHHH----HHCCCEEEEcCCC
Confidence            9999999999877777765    4456778877764

>PRK11579 putative oxidoreductase; Provisional

Probab=97.90  E-value=7.6e-05  Score=67.18  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=55.1

Q ss_pred             CCeEEEEcCChHHH-HHHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQ-FLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~-sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v~~~   86 (275)
                      ++||||||+|.||. ..+..+.+. +.++. ++|++++...+...+...+++.++++. .+.|+|++|+|+....++...
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~   83 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA   83 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence            47999999999998 456766664 67776 578887533222225567789998642 257999999999877776665


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        84 a   84 (346)
T PRK11579         84 A   84 (346)
T ss_pred             H
Confidence            5

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.88  E-value=2.3e-05  Score=68.42  Aligned_cols=95  Identities=23%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcC----ceEecChHHHhccCCCEEEEecCchhH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSG----ISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g----~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      .....++.|+|+|.+|.+++.+|...| .+|++++|+.+.  ..+.+.+    +....+..+. +.++|+||-|+|....
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~DivInaTp~g~~  198 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEE-LADFDLIINATSAGMS  198 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhc-cccCCEEEECCcCCCC
Confidence            345678999999999999999999999 699999999853  2232222    1221122343 3789999999997643


Q ss_pred             HHH-hhcCCCCCCCCCcEEEeCCC
Q 023897           81 SEV-LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        81 ~~v-~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .+. ...++...++++.+++|+..
T Consensus       199 ~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        199 GELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEeec
Confidence            211 01111112667889999864

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.86  E-value=0.00014  Score=63.47  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChh---hhHHHHcCce-EecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDH---SQLCHRSGIS-FFSDKRAFLE-ADNDVILISTSILSLSEV   83 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~---~~~a~~~g~~-~~~~~~~~~~-~~aD~iilavp~~~~~~v   83 (275)
                      ++||+|||+|+||..++..+.+. +.++. ++|++++   ...+.+.|+. .+++.++++. .+.|+|++|+|.....+.
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~   80 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH   80 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            36899999999999887777654 56666 5788874   2467778885 4457777532 257899999999988777


Q ss_pred             hhcCCCCCCCCCcEEEeCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ....    +..|..++|...
T Consensus        81 a~~a----l~aGk~VIdekP   96 (285)
T TIGR03215        81 ARLL----AELGKIVIDLTP   96 (285)
T ss_pred             HHHH----HHcCCEEEECCc
Confidence            7665    445777777553

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.85  E-value=0.00012  Score=64.74  Aligned_cols=90  Identities=17%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHHH---cCceE-ecChHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCHR---SGISF-FSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~~---~g~~~-~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ...+++|||+|.+|.+.+.++.. .+ .+|.+|+|+++.  +.+.+   .++.. ..+.+++ +.++|+|+.|||...  
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~a-v~~aDiVitaT~s~~--  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAI-PEAVDLVVTATTSRT--  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHH-hhcCCEEEEccCCCC--
Confidence            44689999999999999999975 45 479999999852  23332   23333 4677776 489999999999874  


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      .++..  .  +++|+.|.-+++-+.
T Consensus       201 Pl~~~--~--~~~g~hi~~iGs~~p  221 (304)
T PRK07340        201 PVYPE--A--ARAGRLVVAVGAFTP  221 (304)
T ss_pred             ceeCc--c--CCCCCEEEecCCCCC
Confidence            33332  2  678888888886554

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.84  E-value=0.00012  Score=64.69  Aligned_cols=85  Identities=24%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             EEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHHc----------CceE--ecChHHHhccCCCEEEEecCch-
Q 023897           14 IGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQLCHRS----------GISF--FSDKRAFLEADNDVILISTSIL-   78 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~~----------g~~~--~~~~~~~~~~~aD~iilavp~~-   78 (275)
                      |+|||+|.+|+++|..|+..|  .+++++|++++...+...          ....  .++.++  +++||+||++.... 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~--l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD--AADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH--hCCCCEEEEcCCCCC
Confidence            689999999999999999988  589999998753221111          1122  344454  38999999997741 


Q ss_pred             ---------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           79 ---------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        79 ---------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                     .+.++...+ .+   .++.+++.+++
T Consensus        79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~---~p~~~viv~sN  116 (300)
T cd00300          79 KPGETRLDLINRNAPILRSVITNLKKY---GPDAIILVVSN  116 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccC
Confidence                           245566666 43   35666665554

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=7.5e-05  Score=64.92  Aligned_cols=78  Identities=19%  Similarity=0.250  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......+|.|||.|. +|..+|..|.+.|..|+++.+..             .++.+. ..+||+||.|++...+   +.
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~-~~~ADIVIsAvg~p~~---i~  216 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASY-LKDADVIVSAVGKPGL---VT  216 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHH-HhhCCEEEECCCCCcc---cC
Confidence            456778999999988 99999999999999999988652             245554 4899999999997642   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|++++|++..
T Consensus       217 ~-~~--vk~gavVIDvGi~  232 (286)
T PRK14175        217 K-DV--VKEGAVIIDVGNT  232 (286)
T ss_pred             H-HH--cCCCcEEEEcCCC
Confidence            1 12  6789999999864

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=97.82  E-value=5.6e-05  Score=66.04  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhcC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNSL   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~l   87 (275)
                      ...+++||+|+|++|+-+|.+++..|-.|++||.-...+.+...|++.. +++|+ ...||.|-+-+|-. .+..++..-
T Consensus       144 l~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~v-sl~Ei-l~~ADFitlH~PLtP~T~~lin~~  221 (406)
T KOG0068|consen  144 LRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLV-SLEEI-LPKADFITLHVPLTPSTEKLLNDE  221 (406)
T ss_pred             EeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceee-eHHHH-HhhcCEEEEccCCCcchhhccCHH
Confidence            3467899999999999999999999999999998766667777888774 67775 48999999999963 456666543


Q ss_pred             CCCCCCCCcEEEeCC
Q 023897           88 PVHCLQRRTLIADVL  102 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~  102 (275)
                      .++.+++|..+++++
T Consensus       222 tfA~mKkGVriIN~a  236 (406)
T KOG0068|consen  222 TFAKMKKGVRIINVA  236 (406)
T ss_pred             HHHHhhCCcEEEEec
Confidence            112288999998876

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.81  E-value=0.00014  Score=73.51  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-Ce-------------EEEEcCChhh-h-HHHHc-Cc---eE-ecChHHHh--cc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-HI-------------LRATSRTDHS-Q-LCHRS-GI---SF-FSDKRAFL--EA   66 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~-------------V~~~dr~~~~-~-~a~~~-g~---~~-~~~~~~~~--~~   66 (275)
                      .++||+|||+|.||+..+..|.+.. ++             |.+.|++.+. + .+... ++   .. ..+.+++.  ++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            4668999999999999999998753 33             8889999743 2 33333 42   33 45555532  25


Q ss_pred             CCCEEEEecCchhHHHHhhcC
Q 023897           67 DNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        67 ~aD~iilavp~~~~~~v~~~l   87 (275)
                      ++|+|++|+|.....+++...
T Consensus       648 ~~DaVIsalP~~~H~~VAkaA  668 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKAC  668 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHH
Confidence            799999999998776766665

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.80  E-value=9.1e-05  Score=66.22  Aligned_cols=79  Identities=19%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCChHH-HHHHHHHHHCCC--e-EEEEcCChhh--hHHHHcCce-EecChHHHhccC-CCEEEEecCchhH
Q 023897            9 SSTLKIGIIGFGPFG-QFLAKTMIKQGH--I-LRATSRTDHS--QLCHRSGIS-FFSDKRAFLEAD-NDVILISTSILSL   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG-~sla~~L~~~g~--~-V~~~dr~~~~--~~a~~~g~~-~~~~~~~~~~~~-aD~iilavp~~~~   80 (275)
                      ++++||||||+|.++ ...+..+.+.+.  . |.++|++++.  ..+.+.|+. .+++.++++... .|+|++|+|++..
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            356899999999665 568888888752  4 5567999853  467778884 788999875323 5999999999887


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .++....
T Consensus        81 ~e~~~~A   87 (342)
T COG0673          81 AELALAA   87 (342)
T ss_pred             HHHHHHH
Confidence            7766544

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.78  E-value=5.2e-05  Score=66.35  Aligned_cols=93  Identities=20%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc----C-ceE--ecChHHHhccCCCEEEEecCch
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS----G-ISF--FSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~----g-~~~--~~~~~~~~~~~aD~iilavp~~   78 (275)
                      ....+|.|||+|.+|++++..|...|. +|+++||+.+.  ..+...    . ...  ..+..+. +.++|+||-|+|..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~-~~~aDiVInaTp~G  203 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAA-LAAADGLVHATPTG  203 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhh-hCCCCEEEECCcCC
Confidence            345789999999999999999999997 89999999753  222221    1 121  2233333 37899999999875


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ....--..++...+.++.++.|+.
T Consensus       204 m~~~~~~~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        204 MAKHPGLPLPAELLRPGLWVADIV  227 (284)
T ss_pred             CCCCCCCCCCHHHcCCCcEEEEee
Confidence            311100012111156677888876

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.77  E-value=0.00018  Score=62.20  Aligned_cols=86  Identities=20%  Similarity=0.232  Sum_probs=58.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCC----CeEEEEcCChhh-h-HH-------HH---cCceEecChHHHhccCCCEEEEecC
Q 023897           14 IGIIGF-GPFGQFLAKTMIKQG----HILRATSRTDHS-Q-LC-------HR---SGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        14 I~IIG~-G~mG~sla~~L~~~g----~~V~~~dr~~~~-~-~a-------~~---~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |+|||+ |.||..++..|...|    .+|.++|++++. . ..       ..   ..+..++++.++ +++||+||++.-
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~-~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEA-FKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHH-hCCCCEEEECCC
Confidence            689999 999999999999988    689999998742 1 11       11   123445665565 489999999653


Q ss_pred             c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                ..+.++.+.+ .+   .++.+++.+++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~---~p~a~~i~~tN  120 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKY---SPDAWIIVVSN  120 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence            3                1345666666 43   46666666643

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.76  E-value=0.00023  Score=53.71  Aligned_cols=103  Identities=13%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             CeEEEEc----CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           12 LKIGIIG----FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        12 ~~I~IIG----~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      ++|+|||    .|.+|..+...|.+.|++|+..+.....    -.|...+.++.+ .-...|++++++|++.+.++++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e-~p~~iDlavv~~~~~~~~~~v~~~   75 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAE-IPEPIDLAVVCVPPDKVPEIVDEA   75 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGG-CSST-SEEEE-S-HHHHHHHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccC-CCCCCCEEEEEcCHHHHHHHHHHH
Confidence            4799999    6999999999999999999988766521    136677788876 346889999999999999999998


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      ..  +..+.+++-.++......+..++   .+.++++
T Consensus        76 ~~--~g~~~v~~~~g~~~~~~~~~a~~---~gi~vig  107 (116)
T PF13380_consen   76 AA--LGVKAVWLQPGAESEELIEAARE---AGIRVIG  107 (116)
T ss_dssp             HH--HT-SEEEE-TTS--HHHHHHHHH---TT-EEEE
T ss_pred             HH--cCCCEEEEEcchHHHHHHHHHHH---cCCEEEe
Confidence            22  34556666555333333333332   3456664

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.75  E-value=0.00016  Score=65.13  Aligned_cols=88  Identities=18%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHC-CCeEE-EEcCChh--hhHHHHc----C---ceEe-cChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQ-GHILR-ATSRTDH--SQLCHRS----G---ISFF-SDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~-g~~V~-~~dr~~~--~~~a~~~----g---~~~~-~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+|||+ |.+|..+.+.|.+. ++++. +++++..  .......    +   ..+. .+.++. ..++|++|+|+|..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~DvVf~alP~~   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEI-AEDADVVFLALPHG   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHh-hcCCCEEEECCCch
Confidence            58999997 99999999999976 56777 4454432  1121111    1   1121 144553 35899999999999


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ...++...+    ...|..|+|.++.
T Consensus        80 ~s~~~~~~~----~~~G~~VIDlS~~  101 (346)
T TIGR01850        80 VSAELAPEL----LAAGVKVIDLSAD  101 (346)
T ss_pred             HHHHHHHHH----HhCCCEEEeCChh
Confidence            888888876    3457899998864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.75  E-value=0.00016  Score=62.77  Aligned_cols=153  Identities=13%  Similarity=0.114  Sum_probs=92.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh-hHH-------------------HHcCceEecChHHHhccCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS-QLC-------------------HRSGISFFSDKRAFLEADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~-~~a-------------------~~~g~~~~~~~~~~~~~~a   68 (275)
                      ++||+.||+|.+|+.....++.+-  .+|+++|.+... ...                   +..+.-+.++.+.+ +.++
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdieka-i~ea   79 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKA-IKEA   79 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHH-hhhc
Confidence            479999999999998877766543  478888877532 111                   11122456788886 4899


Q ss_pred             CEEEEecCch---------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC---CCce-eecCCC
Q 023897           69 DVILISTSIL---------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE---EMDV-LCTHPM  128 (275)
Q Consensus        69 D~iilavp~~---------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~---~~~~-v~~hP~  128 (275)
                      |+||++|...               ..+...+.+ ..  -....|++.-+++.....+.+.+.+..   +.+| +-.+|-
T Consensus        80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~--s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe  157 (481)
T KOG2666|consen   80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADV--SVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE  157 (481)
T ss_pred             ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHh--ccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence            9999997651               244555555 33  345678998888776666777776642   3333 344565


Q ss_pred             CCCCC-CcCCccccceeeeeeecCChH---HHHHHHHHHHHcC
Q 023897          129 FGPES-GQNGWKDFAFVYEKVRIRDEA---TCSSFLRIFESEG  167 (275)
Q Consensus       129 ~g~~~-~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~G  167 (275)
                      |-.+- +-..+.+...++.+++. +++   +++.+..+++.+-
T Consensus       158 flaegtaikdl~npdrvligg~e-tpeg~~av~~l~~vyehwv  199 (481)
T KOG2666|consen  158 FLAEGTAIKDLFNPDRVLIGGRE-TPEGFQAVQALKDVYEHWV  199 (481)
T ss_pred             HhcccchhhhhcCCceEEECCCC-ChhHHHHHHHHHHHHHhhC
Confidence            54431 11223344445555443 233   4555666677654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.74  E-value=0.0001  Score=68.04  Aligned_cols=91  Identities=24%  Similarity=0.339  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhH---
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSL---   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~---   80 (275)
                      ....+|+|||+|.||..+++.|...| .+|++++|+...  ..+.+.|...  ..+..+. +.++|+||.|++....   
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~-l~~aDvVi~aT~s~~~ii~  256 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEY-LAEADIVISSTGAPHPIVS  256 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHH-HhhCCEEEECCCCCCceEc
Confidence            34578999999999999999999999 689999999853  3555555432  2345554 4799999999876431   


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCC
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      .+.+... ..  -+...+++|++
T Consensus       257 ~e~l~~~~~~--~~~~~~viDla  277 (417)
T TIGR01035       257 KEDVERALRE--RTRPLFIIDIA  277 (417)
T ss_pred             HHHHHHHHhc--CCCCeEEEEeC
Confidence            2333332 11  11235788876

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.71  E-value=0.00015  Score=59.79  Aligned_cols=92  Identities=22%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHH----cCce--E--ecCh---HHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHS--QLCHR----SGIS--F--FSDK---RAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~----~g~~--~--~~~~---~~~~~~~aD~iil   73 (275)
                      ....+++.|+|. |.+|..++..|.+.|++|++++|+.+.  ..+..    .+..  .  ..+.   .++ +.++|+||.
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~diVi~  103 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA-IKGADVVFA  103 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH-HhcCCEEEE
Confidence            456689999995 999999999999999999999999742  22221    1221  1  1222   243 478999999


Q ss_pred             ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCC
Q 023897           74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~  104 (275)
                      ++|.....  .... ..  .+++.+++|+.-.
T Consensus       104 at~~g~~~--~~~~~~~--~~~~~vv~D~~~~  131 (194)
T cd01078         104 AGAAGVEL--LEKLAWA--PKPLAVAADVNAV  131 (194)
T ss_pred             CCCCCcee--chhhhcc--cCceeEEEEccCC
Confidence            99977631  1111 12  3457889998643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.70  E-value=0.00017  Score=64.33  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CCC-eEEEEcCChhh--hHHH----HcCc--eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QGH-ILRATSRTDHS--QLCH----RSGI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g~-~V~~~dr~~~~--~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+++|||+|.+|.+.+.++.. .+. +|.+|+|+++.  +.+.    +.++  ....+.+++ +.++|+|+.|||...
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~aDiVi~aT~s~~  204 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEA-IEEADIIVTVTNAKT  204 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEccCCCC
Confidence            34689999999999999888764 353 89999999853  2222    2344  346777876 489999999999763


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                        .++.  ..  +++|+.|..+++-+.
T Consensus       205 --p~i~--~~--l~~G~hV~~iGs~~p  225 (325)
T PRK08618        205 --PVFS--EK--LKKGVHINAVGSFMP  225 (325)
T ss_pred             --cchH--Hh--cCCCcEEEecCCCCc
Confidence              3333  23  788999988887544

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.68  E-value=0.00026  Score=62.69  Aligned_cols=63  Identities=27%  Similarity=0.385  Sum_probs=45.6

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCCh--hhh--HH----H---HcC--c--eEecChHHHhccCCCEEEE
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTD--HSQ--LC----H---RSG--I--SFFSDKRAFLEADNDVILI   73 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~--~~~--~a----~---~~g--~--~~~~~~~~~~~~~aD~iil   73 (275)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++  +..  .+    .   ..+  .  ...++.++  +.++|+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~--l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD--VAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH--hCCCCEEEE
Confidence            79999997 9999999999999986  599999965  211  11    0   112  1  23345554  389999999


Q ss_pred             ecC
Q 023897           74 STS   76 (275)
Q Consensus        74 avp   76 (275)
                      |+.
T Consensus        79 tag   81 (309)
T cd05294          79 TAG   81 (309)
T ss_pred             ecC
Confidence            986

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.66  E-value=0.00028  Score=64.11  Aligned_cols=90  Identities=16%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-HHcCceE---e---cChHHHhccCCCEEEEecCch---
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-HRSGISF---F---SDKRAFLEADNDVILISTSIL---   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-~~~g~~~---~---~~~~~~~~~~aD~iilavp~~---   78 (275)
                      ...+|.|||+|.+|...++.++..|.+|+++||++.. +.+ ...+..+   .   .++.+. +.++|+||.|++..   
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEEEccccCCCC
Confidence            3467999999999999999999999999999999753 322 2333321   1   233454 47899999998431   


Q ss_pred             ----hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           79 ----SLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        79 ----~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                          ...+.+   ..  ++++.+++|++...
T Consensus       245 ~p~lit~~~l---~~--mk~g~vIvDva~d~  270 (370)
T TIGR00518       245 APKLVSNSLV---AQ--MKPGAVIVDVAIDQ  270 (370)
T ss_pred             CCcCcCHHHH---hc--CCCCCEEEEEecCC
Confidence                123333   33  67788999987543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN00203 glutamyl-tRNA reductase

Probab=97.65  E-value=0.00013  Score=68.88  Aligned_cols=93  Identities=24%  Similarity=0.422  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc-Cce----EecChHHHhccCCCEEEEecCchh-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS-GIS----FFSDKRAFLEADNDVILISTSILS-   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~-g~~----~~~~~~~~~~~~aD~iilavp~~~-   79 (275)
                      ....+|+|||+|.||..+++.|...|+ +|++++|+.+.  ..+.+. +..    ...+..++ +.++|+||.||+... 
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~a-l~~aDVVIsAT~s~~p  342 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLAC-AAEADVVFTSTSSETP  342 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHH-HhcCCEEEEccCCCCC
Confidence            456799999999999999999999996 79999999853  333333 321    22355554 489999999986542 


Q ss_pred             --HHHHhhcC-CCC-CCCCCcEEEeCC
Q 023897           80 --LSEVLNSL-PVH-CLQRRTLIADVL  102 (275)
Q Consensus        80 --~~~v~~~l-~~~-~l~~~~iv~d~~  102 (275)
                        ..+.++.+ +.. ......+++|++
T Consensus       343 vI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        343 LFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             eeCHHHHHHhhhcccccCCCeEEEEeC
Confidence              35666665 210 001235788876

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.61  E-value=0.00012  Score=67.60  Aligned_cols=68  Identities=16%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      ...+|.|||.|.+|.++|+.|++.|++|+++|+++. .......+-......+.. ..++|++|.+.+..
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvV~s~gi~   70 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEF-PEQVDLVVRSPGIK   70 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHH-hcCCCEEEECCCCC
Confidence            346899999999999999999999999999998764 211110000111233332 36789999887653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.61  E-value=0.00045  Score=49.10  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      ...++++|+|+|.+|..++..|.+. +.+|.+|||                          |++|-|++......- +.+
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~-~~~   73 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE-EAT   73 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH-HHH
Confidence            4567999999999999999999998 578999987                          888888877543211 012


Q ss_pred             CCCCCCCCcEEEeC
Q 023897           88 PVHCLQRRTLIADV  101 (275)
Q Consensus        88 ~~~~l~~~~iv~d~  101 (275)
                      ..  ++++.+++|+
T Consensus        74 ~~--~~~~~~v~~~   85 (86)
T cd05191          74 AK--INEGAVVIDL   85 (86)
T ss_pred             Hh--cCCCCEEEec
Confidence            22  4567788875

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06046 alanine dehydrogenase; Validated

Probab=97.61  E-value=0.00019  Score=64.04  Aligned_cols=90  Identities=19%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CC-eEEEEcCChhh--hHHHH----cCc--eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GH-ILRATSRTDHS--QLCHR----SGI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~-~V~~~dr~~~~--~~a~~----~g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+|+|||+|.+|.+.+..+... +. .|.+|||+++.  +.+.+    .+.  ....+.+++ ++ +|+|+.|+|...
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEA-CD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHH-hh-CCEEEEecCCCC
Confidence            346899999999999999999854 43 78899999842  22222    243  456788886 45 999999999753


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                        .++.. ..  +++|+.|..+++-+.
T Consensus       206 --P~~~~-~~--l~~g~hV~~iGs~~p  227 (326)
T PRK06046        206 --PVVKA-EW--IKEGTHINAIGADAP  227 (326)
T ss_pred             --cEecH-HH--cCCCCEEEecCCCCC
Confidence              22211 12  678888888887554

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.61  E-value=0.00068  Score=60.37  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChh--hh--HHHH---------cCceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDH--SQ--LCHR---------SGISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~--~~--~a~~---------~g~~~~~~~~~~~~~~a   68 (275)
                      ...||+|||+ |.+|+++|..|...|.       ++.++|+++.  ..  .+.+         .+..+..+..+. +++|
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~da   80 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEA-FKDV   80 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHH-hCCC
Confidence            4579999998 9999999999998874       7999999652  11  1111         112333343343 4899


Q ss_pred             CEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           69 DVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        69 D~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      |+||++....                .+.++...+ .+  .+++.+++-+++
T Consensus        81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~--~~~~~iiivvsN  130 (323)
T TIGR01759        81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV--AKKDVKVLVVGN  130 (323)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh--CCCCeEEEEeCC
Confidence            9999985441                245566666 44  333666665543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.61  E-value=7.7e-05  Score=54.28  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHH-HCCCeE-EEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMI-KQGHIL-RATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~-~~g~~V-~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~   86 (275)
                      ..+++|+|+|+.|.+++..+. ..|+.+ .++|.++...-..-.|+.+..+.+++ .+.  .|+.+++||.....++..+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l-~~~~~i~iaii~VP~~~a~~~~~~   81 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDEL-EEFIEIDIAIITVPAEAAQEVADE   81 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHH-HHHCTTSEEEEES-HHHHHHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHh-hhhhCCCEEEEEcCHHHHHHHHHH
Confidence            468999999999999985444 357754 46788875321222377777777775 344  8999999999998888887


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      +
T Consensus        82 ~   82 (96)
T PF02629_consen   82 L   82 (96)
T ss_dssp             H
T ss_pred             H
Confidence            7

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.60  E-value=0.00032  Score=62.65  Aligned_cols=88  Identities=19%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH-CCC-eEEEEcCChhh--hHHH----HcCce--EecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK-QGH-ILRATSRTDHS--QLCH----RSGIS--FFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~-~g~-~V~~~dr~~~~--~~a~----~~g~~--~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ..+++|||+|.+|.+.+.+|.. .+. +|++|+|+++.  +.+.    +.|+.  ...+.+++ +.++|+|+.|||... 
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~a-v~~aDiVvtaT~s~~-  206 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAA-MSGADIIVTTTPSET-  206 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHH-hccCCEEEEecCCCC-
Confidence            4689999999999999999974 564 79999999853  2222    22553  35777876 489999999999753 


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                       .++.. ..  +++|+.+..+++-
T Consensus       207 -p~i~~-~~--l~~g~~i~~vg~~  226 (326)
T TIGR02992       207 -PILHA-EW--LEPGQHVTAMGSD  226 (326)
T ss_pred             -cEecH-HH--cCCCcEEEeeCCC
Confidence             22211 12  6778877777653

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.59  E-value=0.0002  Score=66.68  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-cCceEe----cC---hHHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-SGISFF----SD---KRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-~g~~~~----~~---~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |+|.|+|+|.+|..++..|.+.|++|++++++++ .....+ .|+...    .+   ++++-+.++|.+|++++.+....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~   80 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNM   80 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHH
Confidence            6899999999999999999999999999999985 333333 454321    11   22221368999999999875543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.58  E-value=0.00027  Score=65.00  Aligned_cols=70  Identities=20%  Similarity=0.304  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC-ce--EecChHHHhccCCCEEEEecCchh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG-IS--FFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g-~~--~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...++|.|||+|.||..++..|...|. +|++++|+.+.  ..+.+.+ ..  ..+++.+. +.++|+||.||+.+.
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~-l~~aDiVI~aT~a~~  254 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQL-IKKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHH-hccCCEEEECcCCCC
Confidence            456789999999999999999999995 79999999742  3455444 32  22444554 478999999998754

>PRK15076 alpha-galactosidase; Provisional

Probab=97.57  E-value=0.00042  Score=64.14  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             CCeEEEEcCChHHHHHHH--HHH--H--CCCeEEEEcCChhh-hHH--------HHcC----ceEecChHHHhccCCCEE
Q 023897           11 TLKIGIIGFGPFGQFLAK--TMI--K--QGHILRATSRTDHS-QLC--------HRSG----ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~--~L~--~--~g~~V~~~dr~~~~-~~a--------~~~g----~~~~~~~~~~~~~~aD~i   71 (275)
                      ++||+|||+|.||.+.+.  .+.  .  .+.+|+++|++++. +..        ...+    +..+++..++ +++||+|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~ea-l~dADfV   79 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREA-LQGADYV   79 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHH-hCCCCEE
Confidence            379999999999977655  443  1  24689999999853 211        1122    2456776675 4899999


Q ss_pred             EEecCch
Q 023897           72 LISTSIL   78 (275)
Q Consensus        72 ilavp~~   78 (275)
                      |.++-..
T Consensus        80 v~ti~vg   86 (431)
T PRK15076         80 INAIQVG   86 (431)
T ss_pred             eEeeeeC
Confidence            9997764

>PRK05442 malate dehydrogenase; Provisional

Probab=97.56  E-value=0.00077  Score=60.09  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=45.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--h--HHHH---------cCceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--Q--LCHR---------SGISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~--~a~~---------~g~~~~~~~~~~~~~~a   68 (275)
                      .++||+|||+ |.+|+++|..|...|.       ++.++|+++..  .  .+.+         .+..++.+..+. +++|
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~-~~da   81 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVA-FKDA   81 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHH-hCCC
Confidence            4579999998 9999999999887663       79999985421  1  1110         123344444343 4899


Q ss_pred             CEEEEecC
Q 023897           69 DVILISTS   76 (275)
Q Consensus        69 D~iilavp   76 (275)
                      |+||++-.
T Consensus        82 DiVVitaG   89 (326)
T PRK05442         82 DVALLVGA   89 (326)
T ss_pred             CEEEEeCC
Confidence            99999855

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.53  E-value=0.00026  Score=63.41  Aligned_cols=87  Identities=13%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCChh--hhHHHH-cCceEec-ChHHHhccCCCEEEEecCchhHHH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTDH--SQLCHR-SGISFFS-DKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~~--~~~a~~-~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ++||+|+| .|..|..+.+.|.+.+|   ++....++..  ...... ..+.... +..+ + .++|+||+|+|.....+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~-~-~~vDvVf~A~g~g~s~~   78 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFD-F-SGVDIALFSAGGSVSKK   78 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHH-H-cCCCEEEECCChHHHHH
Confidence            47999999 69999999999999876   4455544432  111110 1122221 2223 2 68999999999998888


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +...+    +..|..|+|.++
T Consensus        79 ~~~~~----~~~G~~VIDlS~   95 (334)
T PRK14874         79 YAPKA----AAAGAVVIDNSS   95 (334)
T ss_pred             HHHHH----HhCCCEEEECCc
Confidence            88776    456789999876

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.51  E-value=0.0003  Score=64.08  Aligned_cols=90  Identities=26%  Similarity=0.414  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchh--H-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILS--L-   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~--~-   80 (275)
                      ....++.|||+|-||...|+.|..+| .+|++.+|+.+.  ..+.+.|..+  .+++.+. +.++|+||.||....  + 
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~-l~~~DvVissTsa~~~ii~  254 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEA-LAEADVVISSTSAPHPIIT  254 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHh-hhhCCEEEEecCCCccccC
Confidence            45678999999999999999999999 589999999853  5678887543  3455554 479999999976542  2 


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCC
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      .+-++.. .   -++..+++|++
T Consensus       255 ~~~ve~a~~---~r~~~livDia  274 (414)
T COG0373         255 REMVERALK---IRKRLLIVDIA  274 (414)
T ss_pred             HHHHHHHHh---cccCeEEEEec
Confidence            2333332 2   12235788876

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.51  E-value=0.00049  Score=62.64  Aligned_cols=92  Identities=13%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC-CCeEEEEcCChhh-hH-HH-H-----cCceEecChHHHhccCCCEEEEecCc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ-GHILRATSRTDHS-QL-CH-R-----SGISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~~dr~~~~-~~-a~-~-----~g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      +..++||+|+| .|..|..+.+.|.+. +++|..+.++... +. .. .     .......+.+...++++|+||+|+|.
T Consensus        35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~  114 (381)
T PLN02968         35 SEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH  114 (381)
T ss_pred             cccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence            34667999999 599999999999988 6788887665421 11 11 1     01111112221112789999999999


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ....+++..+     ..+..++|.++-
T Consensus       115 ~~s~~i~~~~-----~~g~~VIDlSs~  136 (381)
T PLN02968        115 GTTQEIIKAL-----PKDLKIVDLSAD  136 (381)
T ss_pred             HHHHHHHHHH-----hCCCEEEEcCch
Confidence            8777777764     346889998863

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.51  E-value=0.001  Score=58.59  Aligned_cols=62  Identities=23%  Similarity=0.353  Sum_probs=44.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceEec--ChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISFFS--DKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~~~--~~~~~~~~~aD~iilav   75 (275)
                      +||+|||+|.+|+++|..|...+.  ++.++|++++..  .+.+         ....+..  +.++  ++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~--~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYED--LKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhh--hcCCCEEEEeC
Confidence            589999999999999999977753  899999995321  1111         1123333  2455  38999999997

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.51  E-value=0.00088  Score=59.65  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=45.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--h--HHHH---------cCceEecChHHHhccCCC
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--Q--LCHR---------SGISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~--~a~~---------~g~~~~~~~~~~~~~~aD   69 (275)
                      .+||+|||+ |.+|+++|..|...|.       ++.++|+++..  .  .+.+         ..+.+..+..+. +++||
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~daD   80 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVA-FKDAD   80 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHH-hCCCC
Confidence            469999998 9999999999998775       79999995432  1  1111         122333343343 48999


Q ss_pred             EEEEecCc
Q 023897           70 VILISTSI   77 (275)
Q Consensus        70 ~iilavp~   77 (275)
                      +||++-..
T Consensus        81 ivvitaG~   88 (322)
T cd01338          81 WALLVGAK   88 (322)
T ss_pred             EEEEeCCC
Confidence            99998544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.48  E-value=0.00034  Score=61.83  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=45.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------c---CceE-ecChHHHhccCCCEEEEecCc
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------S---GISF-FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~---g~~~-~~~~~~~~~~~aD~iilavp~   77 (275)
                      ||+|||+|.+|+++|..|...+.  ++.++|++++..  .+.+       .   .+++ ..+.++  +++||+||++...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~--~~~aDivvitaG~   78 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD--CADADIIVITAGP   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH--hCCCCEEEECCCC
Confidence            79999999999999999998875  799999986422  1111       0   1223 234454  3899999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.47  E-value=0.00044  Score=61.86  Aligned_cols=89  Identities=10%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCChh--hhHHHH-cCceEe-cChHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTDH--SQLCHR-SGISFF-SDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~~--~~~a~~-~g~~~~-~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      .++||+|+| +|.+|.-+.+.|.+.+|   ++........  ...... ....+. .+..+ + +++|++|+|+|.....
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~-~~vD~vFla~p~~~s~   80 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-F-SQVQLAFFAAGAAVSR   80 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-h-cCCCEEEEcCCHHHHH
Confidence            447999999 59999999999998766   3333322211  111100 112221 12233 2 7899999999987666


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +++..+    ...|..++|.++-
T Consensus        81 ~~v~~~----~~~G~~VIDlS~~   99 (336)
T PRK05671         81 SFAEKA----RAAGCSVIDLSGA   99 (336)
T ss_pred             HHHHHH----HHCCCeEEECchh
Confidence            766665    3457899998863

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.46  E-value=0.00053  Score=61.53  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HHcCc--eEecChHHHhccCCCEEEEecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HRSGI--SFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ..+++|||+|..+.+-.+++..- . .+|.+|+|+++.  +.+   .+.++  ....+.+++ +.++|+|+.||+.....
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~a-v~~ADIIvtaT~S~~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEA-VEGADIITTVTADKTNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEecCCCCCC
Confidence            46799999999999998877764 2 389999999853  222   22243  456788886 58999999999854322


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      .++.. ..  +++|+.|.-+++-+.
T Consensus       208 Pvl~~-~~--lkpG~hV~aIGs~~p  229 (346)
T PRK07589        208 TILTD-DM--VEPGMHINAVGGDCP  229 (346)
T ss_pred             ceecH-HH--cCCCcEEEecCCCCC
Confidence            22221 12  678888887776554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.46  E-value=0.00054  Score=60.60  Aligned_cols=88  Identities=14%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHH--HHcC-----ceEe-cC--hHHHhccCCCEEEEecCc-
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLC--HRSG-----ISFF-SD--KRAFLEADNDVILISTSI-   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a--~~~g-----~~~~-~~--~~~~~~~~aD~iilavp~-   77 (275)
                      |||+|||+ |.+|+++|..|...+.  ++.++|++.....+  ....     +... .+  +.+. ++++|+||++... 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~-~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKA-LKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHh-cCCCCEEEEeCCCC
Confidence            69999999 9999999999998884  89999988211111  1111     2222 22  2333 4899999998654 


Q ss_pred             ---------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 ---------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ---------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                     ..+.++...+ .+   .++.+++.+++
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~---~p~a~vivvtN  118 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKA---CPKALILIISN  118 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccC
Confidence                           1234555555 33   45677776664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.44  E-value=0.00048  Score=60.11  Aligned_cols=77  Identities=8%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|||.|. .|.+++..|.+.|..|+++++..             .++.+. +.++|+||.||+...   .+.
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------~~L~~~-~~~aDIvI~AtG~~~---~v~  217 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------QNLPEL-VKQADIIVGAVGKPE---LIK  217 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------hhHHHH-hccCCEEEEccCCCC---cCC
Confidence            345678999999997 99999999999999999998732             234443 379999999996433   111


Q ss_pred             cCCCCCCCCCcEEEeCCC
Q 023897           86 SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s  103 (275)
                      . ..  ++++.+++|++.
T Consensus       218 ~-~~--lk~gavViDvg~  232 (283)
T PRK14192        218 K-DW--IKQGAVVVDAGF  232 (283)
T ss_pred             H-HH--cCCCCEEEEEEE
Confidence            1 23  788999999874

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.44  E-value=0.0012  Score=61.94  Aligned_cols=88  Identities=22%  Similarity=0.268  Sum_probs=63.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-ecC--------------------------hHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-FSD--------------------------KRA   62 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~~~--------------------------~~~   62 (275)
                      ..|+.|+|+|.+|...+..++..|..|+++|+++. .+.++..|... .-+                          ..+
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e  243 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA  243 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999985 45666666543 001                          122


Q ss_pred             HhccCCCEEEEec-----Cch--hHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           63 FLEADNDVILIST-----SIL--SLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        63 ~~~~~aD~iilav-----p~~--~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      . .+++|+||-|+     |..  ..++.++.     +++|.+++|++.-
T Consensus       244 ~-~~~~DIVI~TalipG~~aP~Lit~emv~~-----MKpGsvIVDlA~d  286 (511)
T TIGR00561       244 Q-AKEVDIIITTALIPGKPAPKLITEEMVDS-----MKAGSVIVDLAAE  286 (511)
T ss_pred             H-hCCCCEEEECcccCCCCCCeeehHHHHhh-----CCCCCEEEEeeeC
Confidence            2 36899999998     433  23333333     6788899997743

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.42  E-value=0.00051  Score=59.71  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcCChH-HHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPF-GQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~m-G~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|+|||.|.+ |..++..|.+.|..|+++...             +.++.+. .++||+||.+++...+   +..
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~-~~~ADIVV~avG~~~~---i~~  217 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAH-TRQADIVVAAVGKRNV---LTA  217 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHH-hhhCCEEEEcCCCcCc---cCH
Confidence            456789999998776 999999999999999987643             2355554 4899999999996542   111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       218 -~~--ik~gavVIDVGin  232 (285)
T PRK14189        218 -DM--VKPGATVIDVGMN  232 (285)
T ss_pred             -HH--cCCCCEEEEcccc
Confidence             23  7899999999853

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.42  E-value=0.0011  Score=54.94  Aligned_cols=80  Identities=18%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcC-ceEec-ChHHHhccCCCEEEEecCchhHHHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSG-ISFFS-DKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g-~~~~~-~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ....++|.|||.|.+|...++.|.+.|++|++++++..  .......+ +.... ...+..+.++|+||.|+..+.+...
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~   86 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ   86 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence            35678999999999999999999999999999987652  22222222 32211 1111113789999999999877666


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        87 i~~~   90 (202)
T PRK06718         87 VKED   90 (202)
T ss_pred             HHHH
Confidence            5554

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.42  E-value=0.00058  Score=60.30  Aligned_cols=79  Identities=15%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      ++||+||| .|..|.-+.+.|.+... ++.....+....      .   .+.++. ..++|++|+|+|.....++..++ 
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~---~~~~~~-~~~~DvvFlalp~~~s~~~~~~~-   70 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A---AARREL-LNAADVAILCLPDDAAREAVALI-   70 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c---cCchhh-hcCCCEEEECCCHHHHHHHHHHH-
Confidence            57999999 69999999999988753 554443332111      1   122232 36899999999999888887776 


Q ss_pred             CCCCCCCcEEEeCCC
Q 023897           89 VHCLQRRTLIADVLS  103 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s  103 (275)
                         ...|+.|+|.++
T Consensus        71 ---~~~g~~VIDlSa   82 (313)
T PRK11863         71 ---DNPATRVIDAST   82 (313)
T ss_pred             ---HhCCCEEEECCh
Confidence               346889999875

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.40  E-value=0.00068  Score=63.66  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ....++++|+|+|.+|.+++..|.+.|++|++++|+++.  ..+...+...  ..+..+  +.++|+||.|+|...
T Consensus       329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~--l~~~DiVInatP~g~  402 (477)
T PRK09310        329 PLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE--LHRIDIIINCLPPSV  402 (477)
T ss_pred             CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc--cCCCCEEEEcCCCCC
Confidence            345678999999999999999999999999999998742  2233332221  122233  268999999999875

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.40  E-value=0.0022  Score=59.25  Aligned_cols=91  Identities=15%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHC-------CC--eEEEEcCChhhhH--HHH---------cCceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQ-------GH--ILRATSRTDHSQL--CHR---------SGISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~-------g~--~V~~~dr~~~~~~--a~~---------~g~~~~~~~~~~~~~~a   68 (275)
                      ...||+|||+ |.+|.++|..|...       +.  ++.++|++++...  +.+         ..+.+..+..+. +++|
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~-~kda  177 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEV-FQDA  177 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHH-hCcC
Confidence            4579999999 99999999999987       65  7889999875321  111         123333333343 4899


Q ss_pred             CEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           69 DVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        69 D~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      |+||++....                .+.++...+ .+  ..++.+++.+++
T Consensus       178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~--a~p~~ivIVVsN  227 (444)
T PLN00112        178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEV--ASRNVKVIVVGN  227 (444)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEcCC
Confidence            9999986541                244555555 42  345666666554

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.39  E-value=0.00093  Score=59.77  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHH----HcCce--EecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCH----RSGIS--FFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~----~~g~~--~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ..++|+|||+|.+|.+.+.++.. .+ .+|.+|+|+++.  ..+.    +.|+.  ...+++++ +.++|+|+.|+|...
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~a-l~~aDiVi~aT~s~~  209 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEA-VAGADIIVTTTPSEE  209 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHH-HccCCEEEEeeCCCC
Confidence            34689999999999999888885 44 489999999853  2222    22553  45777786 489999999999753


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                        .++.. ..  +++++.+..+++
T Consensus       210 --p~i~~-~~--l~~g~~v~~vg~  228 (330)
T PRK08291        210 --PILKA-EW--LHPGLHVTAMGS  228 (330)
T ss_pred             --cEecH-HH--cCCCceEEeeCC
Confidence              22211 11  455666655554

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.38  E-value=0.00059  Score=61.29  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEE--cCChhhhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH---ILRAT--SRTDHSQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~--dr~~~~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+||+|+| .|..|.-+.+.|.+.+|   ++...  .|+....... .|.  .+. .+.+. + .++|++|+|+|...
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~~~~~v~~~~~~~-~-~~~D~vf~a~p~~~   81 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EGRDYTVEELTEDS-F-DGVDIALFSAGGSI   81 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cCceeEEEeCCHHH-H-cCCCEEEECCCcHH
Confidence            3457999999 69999999999998776   34332  3333211111 122  221 12233 3 78999999999998


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..++..++    ...|+.++|.++
T Consensus        82 s~~~~~~~----~~~g~~VIDlS~  101 (344)
T PLN02383         82 SKKFGPIA----VDKGAVVVDNSS  101 (344)
T ss_pred             HHHHHHHH----HhCCCEEEECCc
Confidence            77877775    346889999886

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=97.38  E-value=0.035  Score=46.10  Aligned_cols=131  Identities=15%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             CceEecChHHHhccCCCEEEEecCchhH-HHHhhcC-CCCCCCCCcEEEeCCCCChhHHHH-HHhhCCCCCceeecCCCC
Q 023897           53 GISFFSDKRAFLEADNDVILISTSILSL-SEVLNSL-PVHCLQRRTLIADVLSVKEYPRNV-LLQVLPEEMDVLCTHPMF  129 (275)
Q Consensus        53 g~~~~~~~~~~~~~~aD~iilavp~~~~-~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~-l~~~l~~~~~~v~~hP~~  129 (275)
                      |+.++++-+++ ++++|+|+.=.|-... .+++.++ ..  +++|+|++..+++...-... +++.-.....+-+.||-.
T Consensus       126 g~~vttddrea-vedad~iitwlpkg~~qpdiikkfidd--ipegaivthactipttkf~kifed~gredlnvtsyhpg~  202 (343)
T COG4074         126 GIVVTTDDREA-VEDADMIITWLPKGGVQPDIIKKFIDD--IPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGT  202 (343)
T ss_pred             eeEEecCcHhh-hcCCCeEEEeccCCCCCccHHHHHHhc--CCCCceEeeecccchHHHHHHHHHhCccccceeccCCCC
Confidence            44677777786 5899999998887543 4666666 55  78899999988776543333 333333456778889988


Q ss_pred             CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHH
Q 023897          130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIG  193 (275)
Q Consensus       130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a  193 (275)
                      -|+.     +|+.++..+-  .++++++.+-++=+......+.++..-..-+.-..|.++.++.
T Consensus       203 vpem-----kgqvyiaegy--aseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivy  259 (343)
T COG4074         203 VPEM-----KGQVYIAEGY--ASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVY  259 (343)
T ss_pred             Cccc-----cCcEEEeccc--ccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHH
Confidence            7775     5665544322  3788888887777666556677765555545555666665443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.37  E-value=0.00095  Score=59.24  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh--hH---HHHcCc--eEecChHHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS--QL---CHRSGI--SFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~--~~---a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ...+++|||+|..|.+-++++...-  .+|.+|+|+++.  +.   ..+.++  ...++.+++ +.+||+|+.||+... 
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~a-v~~ADIV~taT~s~~-  204 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEV-AHAANLIVTTTPSRE-  204 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHH-hcCCCEEEEecCCCC-
Confidence            3468999999999999999887642  389999999853  22   222344  446788886 589999999998653 


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                       .+++. ..  +++|+.|.-+++-+.
T Consensus       205 -P~~~~-~~--l~~G~hi~~iGs~~p  226 (315)
T PRK06823        205 -PLLQA-ED--IQPGTHITAVGADSP  226 (315)
T ss_pred             -ceeCH-HH--cCCCcEEEecCCCCc
Confidence             33321 12  678888888876544

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.37  E-value=0.001  Score=51.81  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|+| .+..|..++..|.+.|..|+.++++.             .++++. +++||+|+.+++....   +.
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~-v~~ADIVvsAtg~~~~---i~   86 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSK-VHDADVVVVGSPKPEK---VP   86 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHH-HhhCCEEEEecCCCCc---cC
Confidence            355778999999 68999999999999999999998652             245554 4899999999997632   11


Q ss_pred             cCCCCCCCCCcEEEeCCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~k  105 (275)
                      . ..  +++|++++|++..+
T Consensus        87 ~-~~--ikpGa~Vidvg~~~  103 (140)
T cd05212          87 T-EW--IKPGATVINCSPTK  103 (140)
T ss_pred             H-HH--cCCCCEEEEcCCCc
Confidence            1 23  78999999988544

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.36  E-value=0.00062  Score=50.93  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c---C---hHHHhccCCCEEEEecCchhH
Q 023897           14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S---D---KRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~---~---~~~~~~~~aD~iilavp~~~~   80 (275)
                      |.|+|+|.+|..+++.|.+.+.+|++.+++++ ...+.+.|..+. .   +   ++++-+++++.++++++.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~   75 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE   75 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence            57999999999999999997779999999985 466666676321 1   2   222224789999999998753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.35  E-value=0.013  Score=52.95  Aligned_cols=168  Identities=19%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-h---HHHHc--Cc--------------------eEecChHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-Q---LCHRS--GI--------------------SFFSDKRAF   63 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~---~a~~~--g~--------------------~~~~~~~~~   63 (275)
                      |.+|.|+|+|..+--+|..+.+.+. +|=+++|.... +   .+...  +.                    .+..+.++.
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i   80 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI   80 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence            4589999999999999999998864 68788886421 1   12221  11                    123455663


Q ss_pred             hccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCCCh--hHHHHHHhhCCCCCceeecCCCCCCCCCc------
Q 023897           64 LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKE--YPRNVLLQVLPEEMDVLCTHPMFGPESGQ------  135 (275)
Q Consensus        64 ~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k~--~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------  135 (275)
                       ..+-|.+|+|||.++..+|+++++...++.=.-++-++..-+  -.++.+-...+.++.+|+.-.-+|...--      
T Consensus        81 -~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~  159 (429)
T PF10100_consen   81 -EGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPN  159 (429)
T ss_pred             -cccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcc
Confidence             467899999999999999999993222432222222232222  23333333334456666544434433210      


Q ss_pred             ----CCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHH
Q 023897          136 ----NGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKV  181 (275)
Q Consensus       136 ----~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~  181 (275)
                          .+.+..  ++.+....+.....++..+++.+|-.+..++.-.+...
T Consensus       160 ~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~  207 (429)
T PF10100_consen  160 RVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAES  207 (429)
T ss_pred             eehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhh
Confidence                112222  22222222455788999999999999988874444333

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.35  E-value=0.0006  Score=60.92  Aligned_cols=90  Identities=14%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCC--hhhhHHH-HcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRT--DHSQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~--~~~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      +..+||+||| +|..|.-|.+.|.+..|   ++..+..+  .-..... .....+. +.++....++|++|+|+|.....
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~   80 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASA   80 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHH
Confidence            4668999999 59999999999998543   55544322  2111111 1122332 33332126799999999998777


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ++..++    ...|..++|.++
T Consensus        81 ~~~~~~----~~~g~~VIDlS~   98 (336)
T PRK08040         81 AYAEEA----TNAGCLVIDSSG   98 (336)
T ss_pred             HHHHHH----HHCCCEEEECCh
Confidence            777776    346889999886

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.34  E-value=0.0012  Score=58.21  Aligned_cols=91  Identities=19%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHHH----HcCc--eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLCH----RSGI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+++|||+|..|.+-+.++... . .+|.+|+|+++.  +.+.    +.|+  ....+++++ +.+||+|+.||+...
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~ea-v~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAA-LRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEecCCCC
Confidence            346899999999999999998874 3 389999999853  2222    2353  556788886 589999999999753


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                        .++.. ..  +++|+.|.-+++-+.
T Consensus       195 --P~~~~-~~--l~pg~hV~aiGs~~p  216 (301)
T PRK06407        195 --PIFNR-KY--LGDEYHVNLAGSNYP  216 (301)
T ss_pred             --cEecH-HH--cCCCceEEecCCCCC
Confidence              22211 12  677888877776543

>cd00704 MDH Malate dehydrogenase

Probab=97.32  E-value=0.0013  Score=58.61  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCCh--hhhHH------HH-----cCceEecChHHHhccCCCE
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTD--HSQLC------HR-----SGISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~--~~~~a------~~-----~g~~~~~~~~~~~~~~aD~   70 (275)
                      .||+|||+ |.+|++++..|...|.       ++.++|+++  +....      ..     .+..+..+..+. +++||+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~-~~~aDi   79 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEA-FKDVDV   79 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHH-hCCCCE
Confidence            38999998 9999999999998663       499999986  32111      10     122333444454 489999


Q ss_pred             EEEecCc
Q 023897           71 ILISTSI   77 (275)
Q Consensus        71 iilavp~   77 (275)
                      ||++--.
T Consensus        80 VVitAG~   86 (323)
T cd00704          80 AILVGAF   86 (323)
T ss_pred             EEEeCCC
Confidence            9988544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.32  E-value=0.0016  Score=51.92  Aligned_cols=78  Identities=13%  Similarity=0.204  Sum_probs=52.9

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.|||- +.+|..++..|.+.|..|+.+....             .++++. .++||+||.+++...+   +..
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~-~~~ADIVVsa~G~~~~---i~~   95 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEI-TRRADIVVSAVGKPNL---IKA   95 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHH-HTTSSEEEE-SSSTT----B-G
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------Ccccce-eeeccEEeeeeccccc---ccc
Confidence            457789999996 5799999999999999999987652             345554 4899999999987543   221


Q ss_pred             CCCCCCCCCcEEEeCCCCC
Q 023897           87 LPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~k  105 (275)
                       ..  +++|.+++|++...
T Consensus        96 -~~--ik~gavVIDvG~~~  111 (160)
T PF02882_consen   96 -DW--IKPGAVVIDVGINY  111 (160)
T ss_dssp             -GG--S-TTEEEEE--CEE
T ss_pred             -cc--ccCCcEEEecCCcc
Confidence             23  78999999998644

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.32  E-value=0.0016  Score=56.89  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~   86 (275)
                      +..||+|.| .|.+|..+-..+...|++ .++..++..-...-.|+..+.+..++ .+.  .|+.++++|...+.+++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~G~~~y~sv~dl-p~~~~~Dlavi~vpa~~v~~~l~e   82 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFDSVKEA-VEETGANASVIFVPAPFAADAIFE   82 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceecCeeccCCHHHH-hhccCCCEEEEecCHHHHHHHHHH
Confidence            356899999 799999999999999988 56666664212223578888899885 343  6999999999999999998


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        83 ~   83 (286)
T TIGR01019        83 A   83 (286)
T ss_pred             H
Confidence            8

ATP citrate lyases appear to form an outgroup.

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.31  E-value=0.00078  Score=59.86  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=47.7

Q ss_pred             CCCCCCCeEEEEcC-ChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHH-------cCceEecCh---HHHhccCCCEEE
Q 023897            6 PSSSSTLKIGIIGF-GPFGQFLAKTMIKQG--HILRATSRTDHSQLCHR-------SGISFFSDK---RAFLEADNDVIL   72 (275)
Q Consensus         6 ~~~~~~~~I~IIG~-G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~-------~g~~~~~~~---~~~~~~~aD~ii   72 (275)
                      |+..++.||+|||+ |.+|+++|..|...+  .++.++|++.....+.+       ..+...++.   .++ ++++|+||
T Consensus         3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~-l~gaDvVV   81 (321)
T PTZ00325          3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKA-LRGADLVL   81 (321)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHH-hCCCCEEE
Confidence            45567789999998 999999999998665  58999999432111111       112222221   343 48999999


Q ss_pred             EecCc
Q 023897           73 ISTSI   77 (275)
Q Consensus        73 lavp~   77 (275)
                      ++.-.
T Consensus        82 itaG~   86 (321)
T PTZ00325         82 ICAGV   86 (321)
T ss_pred             ECCCC
Confidence            88554

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.31  E-value=0.0017  Score=51.64  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc-CceEe-cChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS-GISFF-SDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~-g~~~~-~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ..+.++|.|||.|.+|...++.|.+.|++|++++++...+. .+. .+... ...++.-+.++|+||.|+..+.+...+.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l-~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~   88 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEM-KELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVK   88 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHH-HhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHH
Confidence            45678999999999999999999999999999975432111 122 22211 1111111378999999999988766665


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      ..
T Consensus        89 ~~   90 (157)
T PRK06719         89 QA   90 (157)
T ss_pred             HH
Confidence            55

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.30  E-value=0.00052  Score=55.25  Aligned_cols=66  Identities=24%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHH------HHcCceEecChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLC------HRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a------~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+||| .|..|+.+++-..+.||+|+.+-||+....+      .+..+---++..+. +.+.|+||.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~-l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASD-LAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhh-hcCCceEEEeccCC
Confidence            7999999 5999999999999999999999999853222      11122111122343 37899999997653

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00087  Score=59.25  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEcCCh-h-hhHHHH----cCc---eE-ecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRATSRTD-H-SQLCHR----SGI---SF-FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~dr~~-~-~~~a~~----~g~---~~-~~~~~~~~~~~aD~iilavp~   77 (275)
                      .++||+|+| .|.-|.-|.+.|.... .++..+..+. . ......    .|.   .. .-+.++....++|++|+|+|.
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            368999999 5999999999998874 4766655443 1 111111    111   11 112233223568999999999


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..-.+++.++    +.++..|+|++.
T Consensus        81 g~s~~~v~~l----~~~g~~VIDLSa  102 (349)
T COG0002          81 GVSAELVPEL----LEAGCKVIDLSA  102 (349)
T ss_pred             hhHHHHHHHH----HhCCCeEEECCc
Confidence            9888888887    445677999885

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.29  E-value=0.0017  Score=57.56  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             eEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHH--HHcC---ceEe----c-ChHHHhccCCCEEEEecCch-
Q 023897           13 KIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLC--HRSG---ISFF----S-DKRAFLEADNDVILISTSIL-   78 (275)
Q Consensus        13 ~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a--~~~g---~~~~----~-~~~~~~~~~aD~iilavp~~-   78 (275)
                      ||+|||+ |.+|+++|..|...++  ++.++|+++....+  ....   ..+.    . ++.+. ++++|+||++.... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~-~~daDivvitaG~~~   79 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENA-LKGADVVVIPAGVPR   79 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHH-cCCCCEEEEeCCCCC
Confidence            7999999 9999999999998875  79999998721111  1111   2222    1 22343 48999999986541 


Q ss_pred             ---------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           79 ---------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        79 ---------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                     .+.++...+ .+   .++.+++.+++
T Consensus        80 ~~g~~R~dll~~N~~I~~~i~~~i~~~---~p~~iiivvsN  117 (312)
T TIGR01772        80 KPGMTRDDLFNVNAGIVKDLVAAVAES---CPKAMILVITN  117 (312)
T ss_pred             CCCccHHHHHHHhHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence                           234555555 33   45666666654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=97.29  E-value=0.0027  Score=56.46  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHHHH-------cCceE---ecChHHHhccCCCEEEEecCc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLCHR-------SGISF---FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a~~-------~g~~~---~~~~~~~~~~~aD~iilavp~   77 (275)
                      ..||+|||+ |++|+++|..|..++.  ++.++|+++....+.+       ..+..   .+++.++ ++++|+||++.-.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~-l~~aDiVVitAG~   96 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDA-LKGADLVIIPAGV   96 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHH-cCCCCEEEEeCCC
Confidence            359999998 9999999999997765  8999999872111111       11121   2233454 4899999998553

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.27  E-value=0.0011  Score=57.66  Aligned_cols=77  Identities=12%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|||-|. +|..++..|.+.|..|+++.+..             .++.+. .++||+||.|++-..+  +-.
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~-~~~ADIvi~avG~p~~--v~~  218 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHH-VRNADLLVVAVGKPGF--IPG  218 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHH-HhhCCEEEEcCCCccc--ccH
Confidence            345678999999877 99999999999999999987542             355664 4899999999964432  111


Q ss_pred             cCCCCCCCCCcEEEeCCC
Q 023897           86 SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s  103 (275)
                        ..  +++|++++|++.
T Consensus       219 --~~--vk~gavVIDvGi  232 (285)
T PRK10792        219 --EW--IKPGAIVIDVGI  232 (285)
T ss_pred             --HH--cCCCcEEEEccc
Confidence              23  788999999983

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0011  Score=58.83  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=65.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HH-cC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HR-SG--ISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~-~g--~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      -..++|||+|..+..-..++..- + -+|.+|+|+++.  +.+   .+ .+  +....+.+++ +++||+|+-|||... 
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~a-v~~aDiIvt~T~s~~-  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEA-VEGADIVVTATPSTE-  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHH-hhcCCEEEEecCCCC-
Confidence            35799999999999999999875 3 389999999852  222   22 23  3567788886 589999999999876 


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                       .++.. ..  +++|+.|.-+++-
T Consensus       208 -Pil~~-~~--l~~G~hI~aiGad  227 (330)
T COG2423         208 -PVLKA-EW--LKPGTHINAIGAD  227 (330)
T ss_pred             -CeecH-hh--cCCCcEEEecCCC
Confidence             33222 23  7888888877763

>PRK10206 putative oxidoreductase; Provisional

Probab=97.25  E-value=0.00093  Score=60.14  Aligned_cols=77  Identities=18%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CCeEEEEcCChHHH-HHHHHHHH--CCCeEE-EEcCChhh-hHHHHcC-ceEecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897           11 TLKIGIIGFGPFGQ-FLAKTMIK--QGHILR-ATSRTDHS-QLCHRSG-ISFFSDKRAFLE-ADNDVILISTSILSLSEV   83 (275)
Q Consensus        11 ~~~I~IIG~G~mG~-sla~~L~~--~g~~V~-~~dr~~~~-~~a~~~g-~~~~~~~~~~~~-~~aD~iilavp~~~~~~v   83 (275)
                      +.||||||+|.++. ..+..+..  .+++|. ++|++++. +.+.+.+ +..+++.++++. .+.|+|++|+|+....++
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~   80 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY   80 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            36899999999875 33454533  256766 58888743 3344454 567788998642 256999999999877776


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      ....
T Consensus        81 ~~~a   84 (344)
T PRK10206         81 AKRA   84 (344)
T ss_pred             HHHH
Confidence            6654

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.23  E-value=0.0024  Score=56.98  Aligned_cols=66  Identities=15%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCC-------CeEEEEcCChhh--hHHHH-----------cCceEecChHHHhccCCC
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQG-------HILRATSRTDHS--QLCHR-----------SGISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g-------~~V~~~dr~~~~--~~a~~-----------~g~~~~~~~~~~~~~~aD   69 (275)
                      ..||+|+|+ |.+|++++..|...+       .+|.++|+++..  .....           ..+....+..+. ++++|
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~-l~~aD   80 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEA-FKDVD   80 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHH-hCCCC
Confidence            468999998 999999999998854       489999996521  11111           112234555454 48999


Q ss_pred             EEEEecCc
Q 023897           70 VILISTSI   77 (275)
Q Consensus        70 ~iilavp~   77 (275)
                      +||++.-.
T Consensus        81 iVI~tAG~   88 (325)
T cd01336          81 VAILVGAM   88 (325)
T ss_pred             EEEEeCCc
Confidence            99988543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0013  Score=57.31  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc---Cc----eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS---GI----SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~---g~----~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...++.|+|+|-.+++++..|++.|. +|++++|+.+.  +.+...   +.    ....+++.  ..++|+||-|||...
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm  202 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGM  202 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCC
Confidence            45789999999999999999999995 89999999853  233222   21    11122322  125899999999864


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCC--ChhHHHHHHhhCCCCCceeecCCC
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSV--KEYPRNVLLQVLPEEMDVLCTHPM  128 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~--k~~~~~~l~~~l~~~~~~v~~hP~  128 (275)
                      ....-..+ +...++++.++.|+--.  .++.++..++.   +.+++.+..|
T Consensus       203 ~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~---G~~~idGl~M  251 (283)
T COG0169         203 AGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQ---GAKTIDGLGM  251 (283)
T ss_pred             CCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHc---CCeEECcHHH
Confidence            33211111 11126788899997633  34444444432   3445555444

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.22  E-value=0.005  Score=56.01  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCC-e------EEEE--cCChhhhHH--HH---------cCceEecChHHHhccC
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGH-I------LRAT--SRTDHSQLC--HR---------SGISFFSDKRAFLEAD   67 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~-~------V~~~--dr~~~~~~a--~~---------~g~~~~~~~~~~~~~~   67 (275)
                      ....||+|||+ |.+|.++|..|...|. +      +.++  |++.+...+  .+         .++.++++..+. +++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~-~kd  120 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV-FED  120 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHH-hCC
Confidence            34579999999 9999999999998764 2      3345  766643211  11         123333343343 489


Q ss_pred             CCEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           68 NDVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        68 aD~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +|+||++....                .+.++...+ .+  .+++.+++-+++
T Consensus       121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~--a~~~~iviVVsN  171 (387)
T TIGR01757       121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAV--ASKNCKVLVVGN  171 (387)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEEcCC
Confidence            99999975431                144555555 43  446666665553

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.21  E-value=0.00088  Score=64.77  Aligned_cols=71  Identities=18%  Similarity=0.319  Sum_probs=54.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cChH---HHhccCCCEEEEecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDKR---AFLEADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~~---~~~~~~aD~iilavp~~~~~   81 (275)
                      .++|.|+|+|++|..+++.|.+.|+++++.|.|++ .+.+++.|..+ .   ++.+   ++-++++|.++++++.+...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n  478 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT  478 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence            46899999999999999999999999999999996 46666677632 1   2222   21146899999999987543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.20  E-value=0.0026  Score=59.84  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-cCh----------------H------HHh-
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-SDK----------------R------AFL-   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~~~----------------~------~~~-   64 (275)
                      ...||.|+|+|.+|...+..++..|.+|+++|++++ .+.+++.|.+.. -+.                +      +.+ 
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~  243 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA  243 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence            356999999999999999999999999999999995 577788887521 100                1      000 


Q ss_pred             --ccCCCEEEEecCch------h-HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           65 --EADNDVILISTSIL------S-LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        65 --~~~aD~iilavp~~------~-~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                        ..++|++|-|+...      . ..+.++.     +++|.+++|++.
T Consensus       244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~-----mkpGgvIVdvg~  286 (509)
T PRK09424        244 EQAKEVDIIITTALIPGKPAPKLITAEMVAS-----MKPGSVIVDLAA  286 (509)
T ss_pred             hccCCCCEEEECCCCCcccCcchHHHHHHHh-----cCCCCEEEEEcc
Confidence              14699999998642      1 2333333     677888888764

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.18  E-value=0.0013  Score=53.78  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHH--HcCceEe--cC----hHHHhccCCCEEEEecCch
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCH--RSGISFF--SD----KRAFLEADNDVILISTSIL   78 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~--~~g~~~~--~~----~~~~~~~~aD~iilavp~~   78 (275)
                      ....++|.||| ...+|..+|..|.+.|..|+++|.+.......  ..+-..+  .+    +.+. .++||+||.|++..
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~-~~~ADIVIsAvG~~  137 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDC-LSQSDVVITGVPSP  137 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHH-hhhCCEEEEccCCC
Confidence            56778999999 67899999999999999999997654211100  0000111  12    4564 48999999999976


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .+.  +.. ..  +++|++++|++..+
T Consensus       138 ~~~--i~~-d~--ik~GavVIDVGi~~  159 (197)
T cd01079         138 NYK--VPT-EL--LKDGAICINFASIK  159 (197)
T ss_pred             CCc--cCH-HH--cCCCcEEEEcCCCc
Confidence            541  110 22  78899999998654

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.18  E-value=0.0022  Score=57.54  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCc----hhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSI----LSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~----~~~   80 (275)
                      ...||+|||+ .||...+.++.+.  ++++. ++|++++.  +.+.+.|+..+++.+++ +.+.|++++++|.    ..-
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eel-l~d~Di~~V~ipt~~P~~~H   79 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEEL-PDDIDIACVVVRSAIVGGQG   79 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHH-hcCCCEEEEEeCCCCCCccH
Confidence            4579999999 6899999999875  46766 48888853  56777898888999996 4778888888754    343


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .++..+.
T Consensus        80 ~e~a~~a   86 (343)
T TIGR01761        80 SALARAL   86 (343)
T ss_pred             HHHHHHH
Confidence            4554444

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.17  E-value=0.0018  Score=58.08  Aligned_cols=90  Identities=13%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHH-CCCe---EEEEcC--ChhhhHH-HHcCceEe-cChHHHhccCCCEEEEecCchh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIK-QGHI---LRATSR--TDHSQLC-HRSGISFF-SDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~-~g~~---V~~~dr--~~~~~~a-~~~g~~~~-~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+||+||| .|..|+-|.+.|.+ ..++   +..+..  +.-.... ......+. .+.++ . .+.|++|+|+|...
T Consensus         3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~-~~~Divf~a~~~~~   80 (347)
T PRK06728          3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-F-EGVDIAFFSAGGEV   80 (347)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-h-cCCCEEEECCChHH
Confidence            3457999999 59999999999995 5665   544432  2211110 00122221 23444 2 78999999999988


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ..++...+    ...|+.++|.++.
T Consensus        81 s~~~~~~~----~~~G~~VID~Ss~  101 (347)
T PRK06728         81 SRQFVNQA----VSSGAIVIDNTSE  101 (347)
T ss_pred             HHHHHHHH----HHCCCEEEECchh
Confidence            77777776    3568899998863

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.17  E-value=0.0011  Score=63.67  Aligned_cols=69  Identities=13%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILS   79 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~   79 (275)
                      +.+|.|+|+|++|+.+++.|.+.|++|++.|.|++ .+.+++.|... .   ++.   +++-++++|.++++++.+.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~  493 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY  493 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence            35799999999999999999999999999999985 45666667632 1   122   2222368999999998864

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.16  E-value=0.001  Score=59.03  Aligned_cols=91  Identities=18%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HHcCc--eEecChHHHhccCCCEEEEecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HRSGI--SFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ..+++|||+|..|.+-+.++... + .+|.+|+|+++.  +.+   .+.++  ....+.+++ +++||+|+.|||.....
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~a-v~~aDii~taT~s~~~~  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEA-VRGADIIVTATPSTTPA  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHH-HTTSSEEEE----SSEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhh-cccCCEEEEccCCCCCC
Confidence            35899999999999999988774 3 389999999842  211   22344  457788886 58999999999976421


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .++.. ..  +++|+.|..+++-+
T Consensus       207 P~~~~-~~--l~~g~hi~~iGs~~  227 (313)
T PF02423_consen  207 PVFDA-EW--LKPGTHINAIGSYT  227 (313)
T ss_dssp             ESB-G-GG--S-TT-EEEE-S-SS
T ss_pred             ccccH-HH--cCCCcEEEEecCCC
Confidence            22221 12  68888888887644

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.15  E-value=0.0028  Score=56.55  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=42.8

Q ss_pred             eEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--hHHHH-----------cCceEecChHHHhccCCCEE
Q 023897           13 KIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--QLCHR-----------SGISFFSDKRAFLEADNDVI   71 (275)
Q Consensus        13 ~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~~a~~-----------~g~~~~~~~~~~~~~~aD~i   71 (275)
                      ||+|||+ |.+|++++..|...+.       ++.++|+++..  ..+..           .++...++..+. ++++|+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~-~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVA-FTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHH-hCCCCEE
Confidence            6999999 9999999999998653       59999986532  11111           111222243343 4899999


Q ss_pred             EEecCc
Q 023897           72 LISTSI   77 (275)
Q Consensus        72 ilavp~   77 (275)
                      |++...
T Consensus        80 VitAG~   85 (324)
T TIGR01758        80 ILVGAF   85 (324)
T ss_pred             EEcCCC
Confidence            998544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.14  E-value=0.00063  Score=62.11  Aligned_cols=84  Identities=15%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             EEEEcCChHHHHHHHHHHHCC-C-eEEEEcCChhh-h-HHHH---cCceE----ecC---hHHHhccCCCEEEEecCchh
Q 023897           14 IGIIGFGPFGQFLAKTMIKQG-H-ILRATSRTDHS-Q-LCHR---SGISF----FSD---KRAFLEADNDVILISTSILS   79 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g-~-~V~~~dr~~~~-~-~a~~---~g~~~----~~~---~~~~~~~~aD~iilavp~~~   79 (275)
                      |.|+|+|.+|+.+++.|.+.+ + +|++.||+.+. + .+.+   ..+..    ..+   +.++ ++++|+||-|+|+..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-SSGGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECCccch
Confidence            789999999999999999986 4 89999999853 2 2221   12211    122   3454 489999999999976


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ...+++..    +..|.-.+|.+
T Consensus        80 ~~~v~~~~----i~~g~~yvD~~   98 (386)
T PF03435_consen   80 GEPVARAC----IEAGVHYVDTS   98 (386)
T ss_dssp             HHHHHHHH----HHHT-EEEESS
T ss_pred             hHHHHHHH----HHhCCCeeccc
Confidence            56666554    33455666643

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.11  E-value=0.0026  Score=51.38  Aligned_cols=62  Identities=24%  Similarity=0.359  Sum_probs=46.7

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEe----cC---hHHHhccCCCEEEEecCc
Q 023897           14 IGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFF----SD---KRAFLEADNDVILISTSI   77 (275)
Q Consensus        14 I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~----~~---~~~~~~~~aD~iilavp~   77 (275)
                      |.|+|+ |.+|..+++.|.+.|++|++..|++..... ..++++.    .+   ..++ +.++|.||.++++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAA-LKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHH-HTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhh-hhhcchhhhhhhh
Confidence            789995 999999999999999999999999863222 4444321    22   3443 4799999999984

...

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.09  E-value=0.0022  Score=56.55  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=42.5

Q ss_pred             EEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceEecChHHHhccCCCEEEEecCc
Q 023897           16 IIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        16 IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|.+|+++|..|...+.  ++.++|++++..  .+.+         ..+.+..+..+. +++||+||++...
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~daDivVitag~   74 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSD-CKDADLVVITAGA   74 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHH-HCCCCEEEECCCC
Confidence            69999999999999998875  799999987421  2211         122333333333 3899999998654

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.07  E-value=0.0008  Score=56.34  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHH--HCCCeEEE-EcCChhhhHHHHcCceE--ecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMI--KQGHILRA-TSRTDHSQLCHRSGISF--FSDKRAFLE-ADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~--~~g~~V~~-~dr~~~~~~a~~~g~~~--~~~~~~~~~-~~aD~iilavp~~~~~~v   83 (275)
                      ...+|+|||+|.+|..++..+.  ..|+++.+ +|+++......-.|..+  ..++.+.+. .+.|.+++|+|.....++
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            3468999999999999998643  45787775 68776421111122222  234455321 248999999999877666


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      ...+
T Consensus       163 ~~~l  166 (213)
T PRK05472        163 ADRL  166 (213)
T ss_pred             HHHH
Confidence            6555

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.07  E-value=0.0015  Score=56.70  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.|||-| .+|..+|..|.+.|..|+++....             .++.+. .++||+||.|++...+   +..
T Consensus       154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~-~~~ADIvV~AvG~p~~---i~~  216 (285)
T PRK14191        154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFY-TQNADIVCVGVGKPDL---IKA  216 (285)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHH-HHhCCEEEEecCCCCc---CCH
Confidence            4567899999987 999999999999999999875332             233443 4899999999986643   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++.
T Consensus       217 -~~--vk~GavVIDvGi  230 (285)
T PRK14191        217 -SM--VKKGAVVVDIGI  230 (285)
T ss_pred             -HH--cCCCcEEEEeec
Confidence             23  788999999884

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.07  E-value=0.0034  Score=53.04  Aligned_cols=89  Identities=12%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC---eEEEEcCC----hhh---------hHHHHcCc-eEecChHHHhccCCCEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH---ILRATSRT----DHS---------QLCHRSGI-SFFSDKRAFLEADNDVI   71 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~---~V~~~dr~----~~~---------~~a~~~g~-~~~~~~~~~~~~~aD~i   71 (275)
                      .+.+||.|+|+|.+|.+++..|.+.|.   +|+++||+    .+.         ..+...+. ....++.+. +.++|++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~-l~~~dvl  101 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEA-LKGADVF  101 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHH-HhcCCEE
Confidence            456799999999999999999999996   59999998    221         12233221 111356554 3789999


Q ss_pred             EEecCchhH-HHHhhcCCCCCCCCCcEEEeCCC
Q 023897           72 LISTSILSL-SEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        72 ilavp~~~~-~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      |-++|+..+ .+.++.     +.++.+++++.+
T Consensus       102 IgaT~~G~~~~~~l~~-----m~~~~ivf~lsn  129 (226)
T cd05311         102 IGVSRPGVVKKEMIKK-----MAKDPIVFALAN  129 (226)
T ss_pred             EeCCCCCCCCHHHHHh-----hCCCCEEEEeCC
Confidence            999985543 344444     345567777663

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.05  E-value=0.0043  Score=54.33  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~   86 (275)
                      +..||+|.| .|.+|+.+.+.|.+.|++ .+|-.+|..-...-.|+..+.++.++ .+.  .|+.++++|.+.+.+++++
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~G~~~y~sv~dl-p~~~~~DlAvi~vp~~~v~~~l~e   84 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFNTVAEA-VEATGANASVIYVPPPFAADAILE   84 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEeCeeccCCHHHH-hhccCCCEEEEEcCHHHHHHHHHH
Confidence            457899999 699999999999998886 45444443000112477788899885 344  7999999999999999998


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        85 ~   85 (291)
T PRK05678         85 A   85 (291)
T ss_pred             H
Confidence            8

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.03  E-value=0.0031  Score=56.90  Aligned_cols=89  Identities=18%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChh-h--hHH--H-H----------cCceEe-cChHHHhccCCCE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDH-S--QLC--H-R----------SGISFF-SDKRAFLEADNDV   70 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~-~--~~a--~-~----------~g~~~~-~~~~~~~~~~aD~   70 (275)
                      +++||+|+| .|.+|+.+.+.|.+... ++.++.+++. .  ...  . .          ....+. .+++. + .++|+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~Dv   79 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-V-DDVDI   79 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-h-cCCCE
Confidence            358999998 79999999999987653 7777744432 1  111  0 0          011221 23444 3 68999


Q ss_pred             EEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        71 iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ||.|+|.....++...+    ...|..++|.++.
T Consensus        80 Vf~a~p~~~s~~~~~~~----~~~G~~vIDls~~  109 (349)
T PRK08664         80 VFSALPSDVAGEVEEEF----AKAGKPVFSNASA  109 (349)
T ss_pred             EEEeCChhHHHHHHHHH----HHCCCEEEECCch
Confidence            99999998777777665    2457788888763

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.03  E-value=0.0011  Score=53.36  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHH--HHCCCeEE-EEcCChhhhHHHHcCceE--ecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTM--IKQGHILR-ATSRTDHSQLCHRSGISF--FSDKRAFLE-ADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L--~~~g~~V~-~~dr~~~~~~a~~~g~~~--~~~~~~~~~-~~aD~iilavp~~~~~~v   83 (275)
                      ++.++.|||+|++|.+++..-  .+.|.+++ ++|.+++..-..-.++.+  .++++..+. .+.|+.++|||.....++
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v  162 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV  162 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHH
Confidence            456899999999999998643  34567655 689988631111122322  234444321 278999999999888888


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      .+.+
T Consensus       163 ad~L  166 (211)
T COG2344         163 ADRL  166 (211)
T ss_pred             HHHH
Confidence            8877

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.02  E-value=0.0027  Score=59.40  Aligned_cols=65  Identities=22%  Similarity=0.328  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEec-ChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFS-DKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~-~~~~~~~~~aD~iilav   75 (275)
                      ..++|.|||+|..|.+ +|+.|.+.|++|+++|.++.  .....+.|+.+.. ...+. +.++|+||++-
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~d~vv~sp   74 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAEN-IKDADVVVYSS   74 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHH-CCCCCEEEECC
Confidence            4568999999999999 89999999999999998753  2233445776532 22232 36899998873

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.02  E-value=0.0038  Score=45.91  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-ecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-FSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+..+|.|||.|.+|..=++.|.+.|.+|++++++..   ..+..++. ....++. ++++|+||.|+......+.+...
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~---~~~~~i~~~~~~~~~~-l~~~~lV~~at~d~~~n~~i~~~   80 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIE---FSEGLIQLIRREFEED-LDGADLVFAATDDPELNEAIYAD   80 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEH---HHHTSCEEEESS-GGG-CTTESEEEE-SS-HHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh---hhhhHHHHHhhhHHHH-HhhheEEEecCCCHHHHHHHHHH
Confidence            4568999999999999999999999999999998841   11112211 1222332 47899999999887665544443

>PRK05086 malate dehydrogenase; Provisional

Probab=97.01  E-value=0.0041  Score=55.16  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=44.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHH-C--CCeEEEEcCChhh-h--HHHHc-C--ceE----ecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIK-Q--GHILRATSRTDHS-Q--LCHRS-G--ISF----FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~-~--g~~V~~~dr~~~~-~--~a~~~-g--~~~----~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+ |.+|.+++..|.. .  ++++.++|+++.. .  .-... +  ..+    .+++.+. ++++|+||+|...
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~-l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPA-LEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHH-cCCCCEEEEcCCC
Confidence            79999998 9999999988855 2  4589999987632 1  11111 1  122    2354454 4899999999765

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.0028  Score=55.10  Aligned_cols=78  Identities=15%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....+++.|||-|. +|..++..|.+.|..|+++....             .++.+. .++||+||.|+.-..+   +.
T Consensus       160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~-~~~ADIvv~AvG~p~~---i~  222 (287)
T PRK14176        160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKY-TLDADILVVATGVKHL---IK  222 (287)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHH-HhhCCEEEEccCCccc---cC
Confidence            345678999999877 99999999999999999987432             345554 4899999998775532   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|++++|++..
T Consensus       223 ~-~~--vk~gavVIDvGin  238 (287)
T PRK14176        223 A-DM--VKEGAVIFDVGIT  238 (287)
T ss_pred             H-HH--cCCCcEEEEeccc
Confidence            1 23  7889999999864

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.99  E-value=0.0029  Score=55.52  Aligned_cols=92  Identities=15%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh---h--hHHHHc----C--ceEecCh------HHHhccCCCE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH---S--QLCHRS----G--ISFFSDK------RAFLEADNDV   70 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~---~--~~a~~~----g--~~~~~~~------~~~~~~~aD~   70 (275)
                      ...+++.|+|+|..+++++..|...|. +|++++|+++   .  ..+...    +  +.. .++      .+. ..++|+
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~-~~~aDi  199 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEA-LASADI  199 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhh-cccCCE
Confidence            455689999999999999999999886 8999999842   1  222222    1  122 222      222 257899


Q ss_pred             EEEecCchhHHHHhhcC--CCCCCCCCcEEEeCC
Q 023897           71 ILISTSILSLSEVLNSL--PVHCLQRRTLIADVL  102 (275)
Q Consensus        71 iilavp~~~~~~v~~~l--~~~~l~~~~iv~d~~  102 (275)
                      ||-|+|.......-..+  +...++++.++.|+.
T Consensus       200 vINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  233 (288)
T PRK12749        200 LTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  233 (288)
T ss_pred             EEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEec
Confidence            99999975422110111  101156678888875

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.98  E-value=0.0015  Score=58.69  Aligned_cols=84  Identities=17%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCe---EEEEcCChh--hhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchhHHHH
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHI---LRATSRTDH--SQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~---V~~~dr~~~--~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ||+||| .|..|..+.+.|.+.+|.   +..+.++..  .... ..|.  ... .+.++  ..++|++|+|+|.....++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~D~v~~a~g~~~s~~~   77 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKGKELEVNEAKIES--FEGIDIALFSAGGSVSKEF   77 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCCeeEEEEeCChHH--hcCCCEEEECCCHHHHHHH
Confidence            689999 699999999999998774   334434332  1111 1122  111 12333  3789999999999988888


Q ss_pred             hhcCCCCCCCCCcEEEeCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ...+    +..|..++|.++
T Consensus        78 a~~~----~~~G~~VID~ss   93 (339)
T TIGR01296        78 APKA----AKCGAIVIDNTS   93 (339)
T ss_pred             HHHH----HHCCCEEEECCH
Confidence            7776    455778999875

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.97  E-value=0.0047  Score=51.40  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHH-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLS-   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~-   81 (275)
                      ....+|.|||.|.+|..-++.|.+.|.+|++++++..  .. .+.+.++....   ....  +.++|+||.|+...... 
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d--l~~~~lVi~at~d~~ln~   84 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI--LEGAFLVIAATDDEELNR   84 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH--hCCcEEEEECCCCHHHHH
Confidence            4567999999999999999999999999999988753  22 23322343211   2233  37999999999887443 


Q ss_pred             HHhhc
Q 023897           82 EVLNS   86 (275)
Q Consensus        82 ~v~~~   86 (275)
                      .+...
T Consensus        85 ~i~~~   89 (205)
T TIGR01470        85 RVAHA   89 (205)
T ss_pred             HHHHH
Confidence            34333

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.97  E-value=0.0025  Score=55.76  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC----ceEec---ChHHHhccCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG----ISFFS---DKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g----~~~~~---~~~~~~~~~aD~iilavp~~   78 (275)
                      ...++.|||+|.+|++++.+|.+.|. +|++++|+.+.  ..+...+    +....   +..+. ..++|+||-|||..
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~-~~~~DiVInaTp~g  201 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAI-EKAAEVLVSTVPAD  201 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhc-ccCCCEEEECCCCC
Confidence            45689999999999999999999996 79999999753  2333222    11111   22232 36789999999975

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.97  E-value=0.0055  Score=54.52  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c----ChHHHhccCCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S----DKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ..+|+|+|+|-+|..-.+..+..|.+|+++||+++ .+.+++.|...+ +    +..+.+.+.+|+|+.+++...+...+
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~~~~l  246 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPATLEPSL  246 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhhHHHHH
Confidence            46899999998888777777778999999999995 578888887321 1    11121222389999999944445555


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      +.+
T Consensus       247 ~~l  249 (339)
T COG1064         247 KAL  249 (339)
T ss_pred             HHH
Confidence            544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.97  E-value=0.0023  Score=51.42  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc---eEe-----------------------cChHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI---SFF-----------------------SDKRA   62 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~---~~~-----------------------~~~~~   62 (275)
                      ...+|.|+|+|+.|..-+..+...|++|+.+|.++.. ......+.   ...                       ..+.+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            4579999999999999999999999999999998853 33333332   110                       11233


Q ss_pred             HhccCCCEEEEec--CchhHHHHhhcC--CCCCCCCCcEEEeCCC
Q 023897           63 FLEADNDVILIST--SILSLSEVLNSL--PVHCLQRRTLIADVLS  103 (275)
Q Consensus        63 ~~~~~aD~iilav--p~~~~~~v~~~l--~~~~l~~~~iv~d~~s  103 (275)
                      . +..+|+||.+.  |......++.+-  ..  ++++.+|+|++.
T Consensus        99 ~-i~~~d~vI~~~~~~~~~~P~lvt~~~~~~--m~~gsvIvDis~  140 (168)
T PF01262_consen   99 F-IAPADIVIGNGLYWGKRAPRLVTEEMVKS--MKPGSVIVDISC  140 (168)
T ss_dssp             H-HHH-SEEEEHHHBTTSS---SBEHHHHHT--SSTTEEEEETTG
T ss_pred             H-HhhCcEEeeecccCCCCCCEEEEhHHhhc--cCCCceEEEEEe
Confidence            3 36789999764  333333333221  33  678999999863

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.96  E-value=0.003  Score=52.99  Aligned_cols=74  Identities=20%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCCh----------hh-hHHHHc-CceEe-----cChHHHhccCC
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTD----------HS-QLCHRS-GISFF-----SDKRAFLEADN   68 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~----------~~-~~a~~~-g~~~~-----~~~~~~~~~~a   68 (275)
                      .++..++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+.          +. +...+. ++...     .+.++....++
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            356778999999999999999999999874 55678776          32 222222 22111     12233223478


Q ss_pred             CEEEEecCchhH
Q 023897           69 DVILISTSILSL   80 (275)
Q Consensus        69 D~iilavp~~~~   80 (275)
                      |+++-|.+.+.+
T Consensus        99 DVlipaA~~~~i  110 (217)
T cd05211          99 DIFAPCALGNVI  110 (217)
T ss_pred             cEEeeccccCcc
Confidence            999999887754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.94  E-value=0.0038  Score=54.97  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=55.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPV   89 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~   89 (275)
                      .||+|+| .|..|.-|.+.|....+ ++....-+...        . ..+.++. .+++|++|+|+|.....++...+  
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------~-~~~~~~~-~~~~D~vFlalp~~~s~~~~~~~--   69 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------D-AAERAKL-LNAADVAILCLPDDAAREAVSLV--   69 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------C-cCCHhHh-hcCCCEEEECCCHHHHHHHHHHH--
Confidence            5899999 69999999999998743 44433211111        0 1133443 47899999999999888877776  


Q ss_pred             CCCCCCcEEEeCCC
Q 023897           90 HCLQRRTLIADVLS  103 (275)
Q Consensus        90 ~~l~~~~iv~d~~s  103 (275)
                        ...|+.|+|.++
T Consensus        70 --~~~g~~VIDlSa   81 (310)
T TIGR01851        70 --DNPNTCIIDAST   81 (310)
T ss_pred             --HhCCCEEEECCh
Confidence              346789999875

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.94  E-value=0.0023  Score=62.04  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~~   80 (275)
                      ..+|-|+|+|++|..+++.|.+.|+++++.|.|++ .+.+.+.|..+ .   ++.   +++-++++|.++++++.+..
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~  477 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT  477 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence            46899999999999999999999999999999996 56666667632 1   222   22113689999999998653

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.93  E-value=0.0024  Score=57.12  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|.|+|+ |.||+.+++.|.+. | .++++++|+...  ..+.+.+.....+++++ +.++|+|+.++...... 
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~-l~~aDiVv~~ts~~~~~-  229 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEA-LPEADIVVWVASMPKGV-  229 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHH-HccCCEEEECCcCCcCC-
Confidence            346689999997 99999999999854 5 589999998742  23333321112345665 47899999887653210 


Q ss_pred             HhhcCCCCCCCCCcEEEeCC
Q 023897           83 VLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ++.. ..  ++++.+++|++
T Consensus       230 ~I~~-~~--l~~~~~viDiA  246 (340)
T PRK14982        230 EIDP-ET--LKKPCLMIDGG  246 (340)
T ss_pred             cCCH-HH--hCCCeEEEEec
Confidence            0111 12  56778999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.92  E-value=0.0032  Score=58.61  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--CceE-e---cChH---HHhccCCCEEEEecCch
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--GISF-F---SDKR---AFLEADNDVILISTSIL   78 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--g~~~-~---~~~~---~~~~~~aD~iilavp~~   78 (275)
                      ..+++|.|+|+|.+|..+++.|.+.|++|+++|++++ .....+.  +... .   ++.+   ++-++++|.++++++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            3468899999999999999999999999999999985 3333332  4322 1   1222   22246899999998876


Q ss_pred             h
Q 023897           79 S   79 (275)
Q Consensus        79 ~   79 (275)
                      .
T Consensus       309 ~  309 (453)
T PRK09496        309 E  309 (453)
T ss_pred             H
Confidence            4

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.92  E-value=0.0037  Score=58.80  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecCh-HHHhccCCCEEEEecCc
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDK-RAFLEADNDVILISTSI   77 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~-~~~~~~~aD~iilavp~   77 (275)
                      .....++|.|||.|..|.++|..|++.|++|+++|+++. .     ....+.|+.+.... .+. ...+|+||++...
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~-~~~~D~Vv~s~Gi   88 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTL-PEDTDLVVTSPGW   88 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccc-cCCCCEEEECCCc
Confidence            344567899999999999999999999999999996652 1     22345687654221 111 2579999998643

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0046  Score=54.69  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC--e-EEEE--cCChhhh--HHHHcCceE---ecChHHHhccCCCEEEEecCchh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH--I-LRAT--SRTDHSQ--LCHRSGISF---FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~--~-V~~~--dr~~~~~--~a~~~g~~~---~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ++||+|+| .|.+|+-|.+.|.+..+  + +.++  .|+.-.+  ......+..   +.+..+  .++.|++|.|.+.+.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~--~~~~Divf~~ag~~~   78 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFV--FSDVDIVFFAAGGSV   78 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccc--cccCCEEEEeCchHH
Confidence            47999999 69999999999999654  2 3333  3443221  111111111   123333  368999999999988


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ..++..++    .+.|.+++|.+|.
T Consensus        79 s~~~~p~~----~~~G~~VIdnsSa   99 (334)
T COG0136          79 SKEVEPKA----AEAGCVVIDNSSA   99 (334)
T ss_pred             HHHHHHHH----HHcCCEEEeCCcc
Confidence            88887776    4568999998874

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.90  E-value=0.0039  Score=57.79  Aligned_cols=77  Identities=18%  Similarity=0.359  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--------C--CeEE-EEcCChhhhH-HHHcCceEecChHHHhc-cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--------G--HILR-ATSRTDHSQL-CHRSGISFFSDKRAFLE-ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--------g--~~V~-~~dr~~~~~~-a~~~g~~~~~~~~~~~~-~~aD~iilavp   76 (275)
                      +++||+|+|+|.||+.+++.|.++        |  .+|. +++++..... ....+...+++.++.+. .+.|+|+.|++
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg   81 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG   81 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence            457999999999999999888653        2  3444 5688764321 11123456778888531 24699999987


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. ...+.+.+
T Consensus        82 ~~~~~~~~~~~   92 (426)
T PRK06349         82 GIEPARELILK   92 (426)
T ss_pred             CchHHHHHHHH
Confidence            53 23344433

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.89  E-value=0.0035  Score=59.30  Aligned_cols=67  Identities=18%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHc--CceEec--ChHHHhccCCCEEEEe--cCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRS--GISFFS--DKRAFLEADNDVILIS--TSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~--g~~~~~--~~~~~~~~~aD~iila--vp~   77 (275)
                      ..++|.|+|.|..|.++|+.|.+.|++|+++|.+...   ....+.  |+.+..  ...+. +.++|+||++  +|+
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~-~~~~d~vv~sp~I~~   81 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPAL-LDGVDLVALSPGLSP   81 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhH-hcCCCEEEECCCCCC
Confidence            3568999999999999999999999999999976521   222233  444322  12332 3689999997  454

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.88  E-value=0.0035  Score=56.56  Aligned_cols=87  Identities=18%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             CCeEEEEc-CChHHHHHHH-HHHHCCCe---EEEEcCChh-hhH--HHHcCceEe--cChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIG-FGPFGQFLAK-TMIKQGHI---LRATSRTDH-SQL--CHRSGISFF--SDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~-~L~~~g~~---V~~~dr~~~-~~~--a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      |++|+||| .|.+|+-|.+ .|.+..+.   +..++.+.. ...  .........  .+.+.  ..++|++|+|+|....
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~--~~~~Divf~a~~~~~s   78 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDA--LKKLDIIITCQGGDYT   78 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhH--hcCCCEEEECCCHHHH
Confidence            37999999 5999999998 66666665   666554432 111  111111222  23344  2789999999999887


Q ss_pred             HHHhhcCCCCCCCCC--cEEEeCCC
Q 023897           81 SEVLNSLPVHCLQRR--TLIADVLS  103 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~--~iv~d~~s  103 (275)
                      .++..++    ...|  ++++|.+|
T Consensus        79 ~~~~~~~----~~aG~~~~VID~Ss   99 (369)
T PRK06598         79 NEVYPKL----RAAGWQGYWIDAAS   99 (369)
T ss_pred             HHHHHHH----HhCCCCeEEEECCh
Confidence            7877776    3456  67999886

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.87  E-value=0.0043  Score=58.06  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEe--cChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFF--SDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~--~~~~~~~~~~aD~iila   74 (275)
                      ..+||+|+|+|..|.++|+.|.+.|++|+++|+++. .     ....+.|+.+.  ....+.+ .++|+||++
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~dlVV~S   84 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-DGFDVIFKT   84 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-ccCCEEEEC
Confidence            346899999999999999999999999999998752 1     22345577543  2222323 789999988

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.87  E-value=0.0029  Score=54.84  Aligned_cols=78  Identities=10%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......+|.|||-+ ..|..+|..|...|..|+.+.++.             .++.+. .++||+||.|++-..+  +-.
T Consensus       148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~-~~~ADIvI~Avgk~~l--v~~  211 (279)
T PRK14178        148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAE-LRQADILVSAAGKAGF--ITP  211 (279)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHH-HhhCCEEEECCCcccc--cCH
Confidence            34567899999976 999999999999999999887653             245554 4899999999984422  111


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      +  .  +++|++++|++..
T Consensus       212 ~--~--vk~GavVIDVgi~  226 (279)
T PRK14178        212 D--M--VKPGATVIDVGIN  226 (279)
T ss_pred             H--H--cCCCcEEEEeecc
Confidence            2  2  6889999999853

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.86  E-value=0.0036  Score=54.24  Aligned_cols=76  Identities=9%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T-------------~~l~~~-~~~ADIvIsAvGkp~~---i~~  217 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT-------------KNLKEV-CKKADILVVAIGRPKF---IDE  217 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---cCH
Confidence            45678999999 68899999999999999999987431             345564 4899999999997653   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++-
T Consensus       218 -~~--ik~gavVIDvGi  231 (278)
T PRK14172        218 -EY--VKEGAIVIDVGT  231 (278)
T ss_pred             -HH--cCCCcEEEEeec
Confidence             23  789999999974

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.85  E-value=0.0035  Score=54.46  Aligned_cols=77  Identities=12%  Similarity=0.274  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~-~~~ADIvI~AvG~p~~---i~~  215 (282)
T PRK14169        153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQL-TKEADILVVAVGVPHF---IGA  215 (282)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cCH
Confidence            45678999999 68899999999999999999885331             345554 4899999999997653   111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       216 -~~--vk~GavVIDvGin  230 (282)
T PRK14169        216 -DA--VKPGAVVIDVGIS  230 (282)
T ss_pred             -HH--cCCCcEEEEeecc
Confidence             23  7899999999853

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.85  E-value=0.0045  Score=55.64  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=57.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChhh--hHHHHc------C----c---eEe-cChHHHhccCCCEEE
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDHS--QLCHRS------G----I---SFF-SDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~~--~~a~~~------g----~---~~~-~~~~~~~~~~aD~ii   72 (275)
                      +||+|+| .|.+|+.+++.|.+.. ++|... +++...  ......      +    .   .+. .+.+.  ..++|+||
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvVf   78 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVA--SKDVDIVF   78 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHH--hccCCEEE
Confidence            5899999 5999999999998875 577765 444321  111100      1    1   111 12222  37899999


Q ss_pred             EecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        73 lavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +|+|.....++...+    ...|..++|.++.
T Consensus        79 ~a~p~~~s~~~~~~~----~~~G~~VIDlsg~  106 (341)
T TIGR00978        79 SALPSEVAEEVEPKL----AEAGKPVFSNASN  106 (341)
T ss_pred             EeCCHHHHHHHHHHH----HHCCCEEEECChh
Confidence            999999877777665    3457788887764

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.84  E-value=0.0034  Score=54.64  Aligned_cols=77  Identities=9%  Similarity=0.223  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++...+   +..
T Consensus       155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~-~~~ADIvI~AvG~p~~---i~~  217 (284)
T PRK14190        155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAEL-TKQADILIVAVGKPKL---ITA  217 (284)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCCCCc---CCH
Confidence            45678999999 68999999999999999999885431             345554 4899999999986652   111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       218 -~~--ik~gavVIDvGi~  232 (284)
T PRK14190        218 -DM--VKEGAVVIDVGVN  232 (284)
T ss_pred             -HH--cCCCCEEEEeecc
Confidence             23  7899999999853

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.83  E-value=0.0043  Score=53.90  Aligned_cols=77  Identities=8%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+..  . 
T Consensus       156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~-~~~ADIvIsAvGk~~~i~--~-  218 (284)
T PRK14177        156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSI-VRQADIIVGAVGKPEFIK--A-  218 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEeCCCcCccC--H-
Confidence            45678999999 68999999999999999999987432             345554 489999999999765311  1 


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       219 -~~--ik~gavVIDvGin  233 (284)
T PRK14177        219 -DW--ISEGAVLLDAGYN  233 (284)
T ss_pred             -HH--cCCCCEEEEecCc
Confidence             23  7899999999853

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.82  E-value=0.0035  Score=55.57  Aligned_cols=64  Identities=14%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEe-------cChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFF-------SDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp   76 (275)
                      |||.|.| +|.+|+.+++.|.++||+|++.+|++.. ......+++..       .++.++ +.++|+||-++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEECCC
Confidence            6899999 6999999999999999999999998642 22223354321       123443 478999998765

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.0047  Score=53.67  Aligned_cols=77  Identities=12%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++...             +.++.+. .++||+||.|++-..+   +..
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~-~~~ADIvI~AvG~~~~---i~~  216 (284)
T PRK14170        154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQV-AKEADILVVATGLAKF---VKK  216 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEecCCcCc---cCH
Confidence            45678999999 6789999999999999999987543             1345664 4899999999997653   111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|.+++|++..
T Consensus       217 -~~--vk~GavVIDvGin  231 (284)
T PRK14170        217 -DY--IKPGAIVIDVGMD  231 (284)
T ss_pred             -HH--cCCCCEEEEccCc
Confidence             23  7899999999854

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.82  E-value=0.005  Score=57.84  Aligned_cols=64  Identities=14%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecC--hHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSD--KRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~--~~~~~~~~aD~iila   74 (275)
                      .++||.|+|+|..|.++|+.|.+.|++|+++|++...  +...+.|+.+...  ..+. +.++|+||.+
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~~~~d~vV~S   81 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQ-LDSFSLVVTS   81 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhH-hcCCCEEEeC
Confidence            3468999999999999999999999999999987632  2234458765422  2232 3688999887

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.0036  Score=54.32  Aligned_cols=76  Identities=9%  Similarity=0.250  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.++|..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~-~k~ADIvIsAvGkp~~---i~~  217 (282)
T PRK14180        155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSH-TTKADILIVAVGKPNF---ITA  217 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHH-hhhcCEEEEccCCcCc---CCH
Confidence            45678999999 68899999999999999999886432             345553 4899999999997653   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++.
T Consensus       218 -~~--vk~gavVIDvGi  231 (282)
T PRK14180        218 -DM--VKEGAVVIDVGI  231 (282)
T ss_pred             -HH--cCCCcEEEEecc
Confidence             23  788999999984

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.82  E-value=0.0061  Score=54.67  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|.|||+|.+|+.+|..|+..|+ +++++|++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45789999999999999999999997 899999874

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.81  E-value=0.0043  Score=58.05  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      ..+||.|||.|..|.+.|..|.+.|++|.++|+.+. .....+.|+.......+.+ .++|+||.+
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~-~~~d~vv~s   72 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADW-SGFAALVLS   72 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHH-cCCCEEEEC
Confidence            456899999999999999999999999999997753 2223455775432112222 689998875

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.77  E-value=0.0053  Score=53.72  Aligned_cols=78  Identities=13%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.||| ...+|..++..|.+.|..|+++...             +.++++. .++||+||.|++-..+   +.
T Consensus       154 i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~-~~~ADIvIsAvGkp~~---i~  216 (297)
T PRK14186        154 IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASI-TREADILVAAAGRPNL---IG  216 (297)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc---cC
Confidence            345678999999 6889999999999999999888543             1345564 4899999999996642   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|++++|++..
T Consensus       217 ~-~~--ik~gavVIDvGin  232 (297)
T PRK14186        217 A-EM--VKPGAVVVDVGIH  232 (297)
T ss_pred             H-HH--cCCCCEEEEeccc
Confidence            1 23  7899999999854

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.77  E-value=0.0043  Score=53.91  Aligned_cols=76  Identities=18%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~-~~~ADIvIsAvGkp~~---i~~  216 (282)
T PRK14166        154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLY-TRQADLIIVAAGCVNL---LRS  216 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---cCH
Confidence            45678999999 68899999999999999999886542             345554 4899999999997643   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++-
T Consensus       217 -~~--vk~GavVIDvGi  230 (282)
T PRK14166        217 -DM--VKEGVIVVDVGI  230 (282)
T ss_pred             -HH--cCCCCEEEEecc
Confidence             23  789999999984

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.77  E-value=0.013  Score=47.67  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             eEEEEcCChHHHHH--HHHHHHC----CCeEEEEcCChhh-h----H----HHHcCc----eEecChHHHhccCCCEEEE
Q 023897           13 KIGIIGFGPFGQFL--AKTMIKQ----GHILRATSRTDHS-Q----L----CHRSGI----SFFSDKRAFLEADNDVILI   73 (275)
Q Consensus        13 ~I~IIG~G~mG~sl--a~~L~~~----g~~V~~~dr~~~~-~----~----a~~~g~----~~~~~~~~~~~~~aD~iil   73 (275)
                      ||+|||+|..-...  ...+...    +.+|.++|++++. +    .    ..+.|.    ..++|.+++ +++||.||.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA-l~gADfVi~   79 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREA-LEGADFVIN   79 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH-HTTESEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH-hCCCCEEEE
Confidence            79999999765542  2233332    2389999999852 2    1    123333    568899997 499999999


Q ss_pred             ecCchhH--HHHhhcCC
Q 023897           74 STSILSL--SEVLNSLP   88 (275)
Q Consensus        74 avp~~~~--~~v~~~l~   88 (275)
                      ++-....  ...=+++|
T Consensus        80 ~irvGg~~~r~~De~Ip   96 (183)
T PF02056_consen   80 QIRVGGLEAREIDEEIP   96 (183)
T ss_dssp             ---TTHHHHHHHHHHTG
T ss_pred             EeeecchHHHHHHHHHH
Confidence            9887543  34445553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.77  E-value=0.005  Score=53.59  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+.   ..
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~-~~~ADIvIsAvGkp~~i---~~  214 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAV-TRRADVLVVAVGRPHLI---TP  214 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEecCCcCcc---CH
Confidence            45678999999 68899999999999999999876432             345554 48999999999866431   11


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       215 -~~--vk~GavVIDVGin  229 (287)
T PRK14173        215 -EM--VRPGAVVVDVGIN  229 (287)
T ss_pred             -HH--cCCCCEEEEccCc
Confidence             23  7899999999853

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.77  E-value=0.0024  Score=55.51  Aligned_cols=89  Identities=18%  Similarity=0.252  Sum_probs=58.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHH--HHh-
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS--EVL-   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~--~v~-   84 (275)
                      ..++.|+|+|-.+++++.+|.+.|. +|++++|+++.  ..+...+.....+..   ...+|+||-|+|.....  +.- 
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~---~~~~dlvINaTp~Gm~~~~~~~~  198 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLG---GIEADILVNVTPIGMAGGPEADK  198 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcc---cccCCEEEECCccccCCCCcccc
Confidence            3489999999999999999999997 69999999853  333344432211111   14689999999965321  100 


Q ss_pred             hcCCCCCCCCCcEEEeCC
Q 023897           85 NSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~  102 (275)
                      ..++...++++.++.|+.
T Consensus       199 ~pi~~~~l~~~~~v~D~v  216 (272)
T PRK12550        199 LAFPEAEIDAASVVFDVV  216 (272)
T ss_pred             CCCCHHHcCCCCEEEEee
Confidence            012111156778888875

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.76  E-value=0.0038  Score=46.21  Aligned_cols=79  Identities=11%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHCCCeEEEEcCChhhhHHHH----cCceEecChHHHhccCCCEEEEecCchhHHHH-hhcC-CCCCCCCCc
Q 023897           23 GQFLAKTMIKQGHILRATSRTDHSQLCHR----SGISFFSDKRAFLEADNDVILISTSILSLSEV-LNSL-PVHCLQRRT   96 (275)
Q Consensus        23 G~sla~~L~~~g~~V~~~dr~~~~~~a~~----~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v-~~~l-~~~~l~~~~   96 (275)
                      +..+++.|.+.|.+|.+||+.-.......    .+++..++++++ .+++|+||++++-+...++ .+++ ..  +.++.
T Consensus        19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vvl~t~h~~f~~l~~~~~~~~--~~~~~   95 (106)
T PF03720_consen   19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEA-LKGADAVVLATDHDEFRELDWEEIAKL--MRKPP   95 (106)
T ss_dssp             HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHH-HTTESEEEESS--GGGGCCGHHHHHHH--SCSSE
T ss_pred             HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHH-hcCCCEEEEEecCHHHhccCHHHHHHh--cCCCC
Confidence            55688999999999999998764332222    577888888886 4899999999998876542 2233 33  55778


Q ss_pred             EEEeCCCC
Q 023897           97 LIADVLSV  104 (275)
Q Consensus        97 iv~d~~s~  104 (275)
                      +|+|+-++
T Consensus        96 ~iiD~~~~  103 (106)
T PF03720_consen   96 VIIDGRNI  103 (106)
T ss_dssp             EEEESSST
T ss_pred             EEEECccc
Confidence            99998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.75  E-value=0.0052  Score=53.33  Aligned_cols=78  Identities=10%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|||-+ .+|..+|..|.++|..|+++...             +.++.+. .++||+||.|+.-..+   +.
T Consensus       153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------T~~l~~~-~~~ADIvV~AvGkp~~---i~  215 (281)
T PRK14183        153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------TKDLKAH-TKKADIVIVGVGKPNL---IT  215 (281)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CcCHHHH-HhhCCEEEEecCcccc---cC
Confidence            34567899999965 99999999999999999877532             1245554 4899999999986643   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       216 ~-~~--vk~gavvIDvGin  231 (281)
T PRK14183        216 E-DM--VKEGAIVIDIGIN  231 (281)
T ss_pred             H-HH--cCCCcEEEEeecc
Confidence            1 23  7889999999853

>PRK07236 hypothetical protein; Provisional

Probab=96.74  E-value=0.0024  Score=58.23  Aligned_cols=38  Identities=21%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++|+.++|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            45667899999999999999999999999999999875

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.73  E-value=0.0057  Score=53.40  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.||| ...+|..++..|.+.|..|+++....             .++.+. .++||+||.|++-..+   +.
T Consensus       156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~-~~~ADIvVsAvGkp~~---i~  218 (294)
T PRK14187        156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADY-CSKADILVAAVGIPNF---VK  218 (294)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cC
Confidence            345678999999 68899999999999999999886532             345554 4899999999997643   11


Q ss_pred             cCCCCCCCCCcEEEeCCC
Q 023897           86 SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s  103 (275)
                      . ..  +++|++++|++-
T Consensus       219 ~-~~--ik~gaiVIDVGi  233 (294)
T PRK14187        219 Y-SW--IKKGAIVIDVGI  233 (294)
T ss_pred             H-HH--cCCCCEEEEecc
Confidence            1 23  788999999974

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=96.73  E-value=0.0072  Score=52.92  Aligned_cols=77  Identities=10%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.|..|+++...             +.++++. .++||+||.|+.-..   .+..
T Consensus       164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~-~~~ADIvv~AvGk~~---~i~~  226 (299)
T PLN02516        164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESI-VREADIVIAAAGQAM---MIKG  226 (299)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEcCCCcC---ccCH
Confidence            45678999999 6889999999999999999998643             2345664 489999999998642   1111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       227 -~~--vk~gavVIDvGin  241 (299)
T PLN02516        227 -DW--IKPGAAVIDVGTN  241 (299)
T ss_pred             -HH--cCCCCEEEEeecc
Confidence             23  7899999999853

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.72  E-value=0.0057  Score=51.70  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcC----------Chh-hh-HHHHcC-------ceEecChHHHhccC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSR----------TDH-SQ-LCHRSG-------ISFFSDKRAFLEAD   67 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr----------~~~-~~-~a~~~g-------~~~~~~~~~~~~~~   67 (275)
                      ++..++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.          +.. +. ...+.|       .... +.++....+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~  106 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD  106 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence            4567899999999999999999999999988 5565          322 21 122223       1111 223322357


Q ss_pred             CCEEEEecCchhH-HHHhhcC
Q 023897           68 NDVILISTSILSL-SEVLNSL   87 (275)
Q Consensus        68 aD~iilavp~~~~-~~v~~~l   87 (275)
                      +|+++-|.+.+.+ .+.+.++
T Consensus       107 ~Dvlip~a~~~~i~~~~~~~l  127 (227)
T cd01076         107 CDILIPAALENQITADNADRI  127 (227)
T ss_pred             ccEEEecCccCccCHHHHhhc
Confidence            8888888877654 3444444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=96.71  E-value=0.0019  Score=58.92  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CeEEEEcCChHHH-HHHHHHHHCCCeEEEEcCChhh-hHHHHcCc------------------eEe--cChHHH--hccC
Q 023897           12 LKIGIIGFGPFGQ-FLAKTMIKQGHILRATSRTDHS-QLCHRSGI------------------SFF--SDKRAF--LEAD   67 (275)
Q Consensus        12 ~~I~IIG~G~mG~-sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~------------------~~~--~~~~~~--~~~~   67 (275)
                      |||.++|+|+||+ .++..|.+.|++|+++|+++.. ....+.|.                  ...  .+.+++  .+..
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~   80 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE   80 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence            7899999999998 4588888899999999987642 22222221                  011  011221  1247


Q ss_pred             CCEEEEecCchhHHHHhhcC
Q 023897           68 NDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        68 aD~iilavp~~~~~~v~~~l   87 (275)
                      +|+|.++|++.....+...+
T Consensus        81 ~dlvt~~v~~~~~~s~~~~l  100 (381)
T PRK02318         81 ADLVTTAVGPNILPFIAPLI  100 (381)
T ss_pred             CCEEEeCCCcccchhHHHHH
Confidence            89999999987655555544

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.008  Score=55.99  Aligned_cols=68  Identities=22%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--h----hHHHHcCceEe--cChHHHhccCCCEEEEecCc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--S----QLCHRSGISFF--SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~----~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~   77 (275)
                      +..++|.|+|.|.+|.++|..|++.|++|+++|++..  .    ....+.|+.+.  ...++. ...+|+||.++-.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~d~vv~~~g~   78 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEF-LEGVDLVVVSPGV   78 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhH-hhcCCEEEECCCC
Confidence            4567999999999999999999999999999999752  2    11223465432  122232 3679999998654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.69  E-value=0.0068  Score=50.32  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            45789999999999999999999997 899999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.68  E-value=0.031  Score=51.76  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             CeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCChhh-h--------HHHHcC----ceEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTDHS-Q--------LCHRSG----ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~~~-~--------~a~~~g----~~~~~~~~~~~~~~aD~ii   72 (275)
                      |||+|||+|.. ...+...|.+.     +-+|+++|.+++. +        ...+.|    +..++|.+++ +++||.||
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~A-l~gADfVi   79 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDA-IIDADFVI   79 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHH-hCCCCEEE
Confidence            69999999873 33455555543     2489999999842 2        122334    3578899997 59999999


Q ss_pred             EecCch
Q 023897           73 ISTSIL   78 (275)
Q Consensus        73 lavp~~   78 (275)
                      .++-..
T Consensus        80 ~~irvG   85 (425)
T cd05197          80 NQFRVG   85 (425)
T ss_pred             EeeecC
Confidence            998763

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.0083  Score=56.61  Aligned_cols=66  Identities=15%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEec--ChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS--DKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~--~~~~~~~~~aD~iilavp   76 (275)
                      ...+|.|+|+|..|.+.++.|.+.|++|+++|+++. ...+.+.|+....  ...+. +.++|+||.+-.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~-l~~~D~VV~SpG   79 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQ-IADYALVVTSPG   79 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhH-hhcCCEEEECCC
Confidence            456899999999999999999999999999997764 3344556775532  22232 368999998853

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.67  E-value=0.0071  Score=55.08  Aligned_cols=89  Identities=10%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC--C-CeEEEEcCChhh--hHH----HHc-C---ceEecChHHHhccCCCEEEEecCc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ--G-HILRATSRTDHS--QLC----HRS-G---ISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~--g-~~V~~~dr~~~~--~~a----~~~-g---~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      ..+++|||+|..+.+-..++...  . -+|.+|+|+++.  +.+    ... |   +....+.+++ +.+||+|+.||+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~ea-v~~ADIVvtaT~s  233 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEV-VRGSDIVTYCNSG  233 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHH-HcCCCEEEEccCC
Confidence            46899999999999999998873  2 389999999852  222    122 2   4567888886 5899999999974


Q ss_pred             hh----HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 LS----LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~----~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..    ...++.. ..  +++|+.|.-+++
T Consensus       234 ~~~~~s~~Pv~~~-~~--lkpG~hv~~ig~  260 (379)
T PRK06199        234 ETGDPSTYPYVKR-EW--VKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCCcCcEecH-HH--cCCCcEEecCCc
Confidence            32    1122211 12  677877765554

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.65  E-value=0.075  Score=46.75  Aligned_cols=180  Identities=11%  Similarity=0.153  Sum_probs=105.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh----hhHHHHcCc---------------------eEecChHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH----SQLCHRSGI---------------------SFFSDKRAF   63 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~----~~~a~~~g~---------------------~~~~~~~~~   63 (275)
                      .+.++.++|+|...--+|.-+...| +.+-+++|...    ...+...+-                     .+..+++++
T Consensus         3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~   82 (431)
T COG4408           3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA   82 (431)
T ss_pred             cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence            4568999999999999999999887 57777777542    222322211                     123455664


Q ss_pred             hccCCCEEEEecCchhHHHHhhcCCCCCCCC--CcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC----
Q 023897           64 LEADNDVILISTSILSLSEVLNSLPVHCLQR--RTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN----  136 (275)
Q Consensus        64 ~~~~aD~iilavp~~~~~~v~~~l~~~~l~~--~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~----  136 (275)
                       ..+-+.+|+|||.+...+++++++...++.  ..++++-+ +. ...++.+...++.++.+++.-.-.|..+-..    
T Consensus        83 -~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGs-n~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p  160 (431)
T COG4408          83 -VGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGS-NLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQP  160 (431)
T ss_pred             -hchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccc-cHHHHHHHhhhCCCceEEEeehhcccceeecccCc
Confidence             467899999999999999999994322432  33444322 22 2233433333355666766443333321100    


Q ss_pred             ------CccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhh--hhHHHHH
Q 023897          137 ------GWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQ--FLTHTIG  193 (275)
Q Consensus       137 ------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~--~lp~~~a  193 (275)
                            +.+.  -++.+....+....+++..+++..|..+.++..-.|...-..+-  |-|-++.
T Consensus       161 ~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlfln  223 (431)
T COG4408         161 NRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLN  223 (431)
T ss_pred             chHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhh
Confidence                  0111  12222222245577889999999999998886555544333322  6665554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.63  E-value=0.0051  Score=58.57  Aligned_cols=95  Identities=21%  Similarity=0.239  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ...+++.|+|+|.+|++++..|.+.|++|++++|+.+.  ..+...+...  ..+..+.....+|+|+-|+|.......-
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~  456 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD  456 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence            44568999999999999999999999999999998742  2333333211  1222221113568888888876422110


Q ss_pred             h-cCCCCCCCCCcEEEeCCC
Q 023897           85 N-SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        85 ~-~l~~~~l~~~~iv~d~~s  103 (275)
                      . .++...++++.++.|+.-
T Consensus       457 ~~pl~~~~l~~~~~v~D~vY  476 (529)
T PLN02520        457 ETPISKHALKHYSLVFDAVY  476 (529)
T ss_pred             CCcccHhhCCCCCEEEEecc
Confidence            1 121111566778888753

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.61  E-value=0.0053  Score=56.93  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhH---HH--HcCceEec-ChHHHhccCCCEEEEec
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQL---CH--RSGISFFS-DKRAFLEADNDVILIST   75 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~---a~--~~g~~~~~-~~~~~~~~~aD~iilav   75 (275)
                      ||.|||.|..|.++|+.|.+.|++|+++|..+.  ...   ..  ..|+.+.. ...+. +.++|+||++-
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~-~~~~d~vv~sp   70 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLED-LNNADLVVKSP   70 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHH-hccCCEEEECC
Confidence            589999999999999999999999999997653  221   12  24775432 11332 37899988874

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.61  E-value=0.007  Score=53.81  Aligned_cols=78  Identities=13%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.||| ...+|..+|..|.+.|..|+++....             .++.+. .++||+||.|++-..+   +.
T Consensus       210 i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~-~~~ADIvIsAvGkp~~---v~  272 (345)
T PLN02897        210 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQI-TRKADIVIAAAGIPNL---VR  272 (345)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cC
Confidence            345678999999 68899999999999999998875431             345554 4899999999997653   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       273 ~-d~--vk~GavVIDVGin  288 (345)
T PLN02897        273 G-SW--LKPGAVVIDVGTT  288 (345)
T ss_pred             H-HH--cCCCCEEEEcccc
Confidence            1 23  7899999999853

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.027  Score=48.08  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCC-CeEE-EEcCChhh---hHH------HHcCceEecChHHHhccCCCEEEEecCch
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQG-HILR-ATSRTDHS---QLC------HRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g-~~V~-~~dr~~~~---~~a------~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      +|||+|.|+ |+||+.+.+.+.+.. +++. .++|.+..   ..+      ...|+.+.+++... ..++|++|=-+-|.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~-~~~~DV~IDFT~P~   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLV-KADADVLIDFTTPE   80 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhc-ccCCCEEEECCCch
Confidence            689999996 999999999998875 5655 47777631   111      22355666665554 47899999888877


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      ...+.++.. .+    +-.+|+-+++....-.+.+++..
T Consensus        81 ~~~~~l~~~~~~----~~~lVIGTTGf~~e~~~~l~~~a  115 (266)
T COG0289          81 ATLENLEFALEH----GKPLVIGTTGFTEEQLEKLREAA  115 (266)
T ss_pred             hhHHHHHHHHHc----CCCeEEECCCCCHHHHHHHHHHH
Confidence            777777665 22    22466666666666566666553

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.60  E-value=0.0067  Score=54.23  Aligned_cols=76  Identities=11%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.+..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-------------~nl~~~-~r~ADIVIsAvGkp~~---i~~  290 (364)
T PLN02616        228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEI-TREADIIISAVGQPNM---VRG  290 (364)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---CCH
Confidence            45678999999 68899999999999999999885431             345564 4899999999987643   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++-
T Consensus       291 -d~--vK~GAvVIDVGI  304 (364)
T PLN02616        291 -SW--IKPGAVVIDVGI  304 (364)
T ss_pred             -HH--cCCCCEEEeccc
Confidence             23  789999999984

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.59  E-value=0.0077  Score=45.22  Aligned_cols=77  Identities=22%  Similarity=0.263  Sum_probs=48.1

Q ss_pred             cCChHHHHHHHHHHHC----CCeEE-EEcCCh--hh-hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhhcC
Q 023897           18 GFGPFGQFLAKTMIKQ----GHILR-ATSRTD--HS-QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        18 G~G~mG~sla~~L~~~----g~~V~-~~dr~~--~~-~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~~l   87 (275)
                      |+|.||+.++..|.+.    +++|. +++|+.  .. ......+...+.+++++ +.  ..|+||=|++.+.+.+.+...
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dvvVE~t~~~~~~~~~~~~   79 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEEL-IDDPDIDVVVECTSSEAVAEYYEKA   79 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHH-HTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHH-hcCcCCCEEEECCCchHHHHHHHHH
Confidence            8999999999999887    45655 467872  11 22222344566788875 35  788888888877777666655


Q ss_pred             CCCCCCCCcEEE
Q 023897           88 PVHCLQRRTLIA   99 (275)
Q Consensus        88 ~~~~l~~~~iv~   99 (275)
                          +..|.-++
T Consensus        80 ----L~~G~~VV   87 (117)
T PF03447_consen   80 ----LERGKHVV   87 (117)
T ss_dssp             ----HHTTCEEE
T ss_pred             ----HHCCCeEE
Confidence                34454444

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.59  E-value=0.0095  Score=50.20  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             EEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHcCceEe-------cChHHHhccCCCEEEEecCc
Q 023897           14 IGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRSGISFF-------SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        14 I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp~   77 (275)
                      |+|+| .|.+|+.++..|.+.+++|.+..|++..   ......|+++.       .++.++ ++++|.||++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEEeecCc
Confidence            78999 5999999999999999999999998742   33445676421       223443 4899999999993

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.0072  Score=52.55  Aligned_cols=77  Identities=13%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHH--CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIK--QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~--~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ....+++.||| .+.+|..++..|.+  .+..|+++...             +.++.+. .++||+||.|++-..+   +
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~-~k~ADIvV~AvGkp~~---i  217 (284)
T PRK14193        155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAH-TRRADIIVAAAGVAHL---V  217 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHH-HHhCCEEEEecCCcCc---c
Confidence            44678999999 68999999999998  67889888643             2355664 4899999999987642   1


Q ss_pred             hcCCCCCCCCCcEEEeCCCC
Q 023897           85 NSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~  104 (275)
                      .. ..  +++|++++|++..
T Consensus       218 ~~-~~--ik~GavVIDvGin  234 (284)
T PRK14193        218 TA-DM--VKPGAAVLDVGVS  234 (284)
T ss_pred             CH-HH--cCCCCEEEEcccc
Confidence            11 23  7899999999853

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.54  E-value=0.016  Score=48.52  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|+|||+|.+|+.++..|...|. +++++|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            45689999999999999999999997 699999873

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.51  E-value=0.011  Score=51.60  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....+++.||| ...+|..++..|.+.|..|+++...             +.++.+. .++||+||.|+.-..+   +..
T Consensus       156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~-~~~ADIvV~AvGkp~~---i~~  218 (288)
T PRK14171        156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSI-TSKADIVVAAIGSPLK---LTA  218 (288)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCCCc---cCH
Confidence            45678999999 6889999999999999999987633             1345554 4899999999986531   111


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                       ..  +++|.+++|++-
T Consensus       219 -~~--vk~GavVIDvGi  232 (288)
T PRK14171        219 -EY--FNPESIVIDVGI  232 (288)
T ss_pred             -HH--cCCCCEEEEeec
Confidence             23  789999999873

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.49  E-value=0.0045  Score=51.29  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT   43 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~   43 (275)
                      ...||+|+|+|.+|+.+|..|++.|+ +++++|++
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999998 79999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.49  E-value=0.0088  Score=52.06  Aligned_cols=77  Identities=13%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|.||| ...+|..++..|.+.    +..|+++...             +.++.+. .++||+||.|++-..+  
T Consensus       150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------T~~l~~~-~~~ADIvV~AvG~p~~--  213 (287)
T PRK14181        150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------SENLTEI-LKTADIIIAAIGVPLF--  213 (287)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc--
Confidence            45678999999 688999999999988    6788887543             1355664 4899999999987642  


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                       +.. ..  +++|++++|++..
T Consensus       214 -i~~-~~--ik~GavVIDvGin  231 (287)
T PRK14181        214 -IKE-EM--IAEKAVIVDVGTS  231 (287)
T ss_pred             -cCH-HH--cCCCCEEEEeccc
Confidence             111 23  7899999999843

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.47  E-value=0.0098  Score=51.65  Aligned_cols=77  Identities=10%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....++|.||| ...+|..++..|.+.+..|+++....             .++.+. .++||+||.|++-..+   +..
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~-~~~ADIvI~AvGk~~~---i~~  216 (282)
T PRK14182        154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGE-VGRADILVAAIGKAEL---VKG  216 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEecCCcCc---cCH
Confidence            45678999999 68899999999999999999886431             345554 4899999999986432   111


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|++++|++..
T Consensus       217 -~~--ik~gaiVIDvGin  231 (282)
T PRK14182        217 -AW--VKEGAVVIDVGMN  231 (282)
T ss_pred             -HH--cCCCCEEEEeece
Confidence             23  7899999999853

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.45  E-value=0.011  Score=59.23  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCChHHHHH-HHHHHHCCCeEEEEcCChh--hhHHHHcCceEec-ChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFL-AKTMIKQGHILRATSRTDH--SQLCHRSGISFFS-DKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sl-a~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~-~~~~~~~~~aD~iila   74 (275)
                      ++.+|.|||.|..|.+. |+.|.+.|++|+++|.++.  .....+.|+.+.. ...+. +.++|+||++
T Consensus         3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~-~~~~d~vV~S   70 (809)
T PRK14573          3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEH-VPEDAVVVYS   70 (809)
T ss_pred             CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHH-cCCCCEEEEC
Confidence            44579999999999997 9999999999999997652  2333456776532 22233 3689999887

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.42  E-value=0.013  Score=52.67  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|||+|.+|+.+|..|+..|. +|+++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            45789999999999999999999998 899999874

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.41  E-value=0.04  Score=51.18  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=45.5

Q ss_pred             CeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCChhh-h----HH----HHcC----ceEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTDHS-Q----LC----HRSG----ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~~~-~----~a----~~~g----~~~~~~~~~~~~~~aD~ii   72 (275)
                      |||+|||+|.. +..+...|...     +-+|+++|.+++. +    .+    .+.|    +..++|.+++ +++||.||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eA-l~gADfVi   79 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEA-FTDADFVF   79 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHH-hCCCCEEE
Confidence            79999999874 22344455433     2489999999842 1    12    2233    3578899997 59999999


Q ss_pred             EecCch
Q 023897           73 ISTSIL   78 (275)
Q Consensus        73 lavp~~   78 (275)
                      .++-..
T Consensus        80 ~~irvG   85 (437)
T cd05298          80 AQIRVG   85 (437)
T ss_pred             EEeeeC
Confidence            998764

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.38  E-value=0.011  Score=52.82  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=48.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh---HHHHcCceEec---ChHHHhccCCCEEEE---ecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ---LCHRSGISFFS---DKRAFLEADNDVILI---STSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~---~a~~~g~~~~~---~~~~~~~~~aD~iil---avp~~~~~   81 (275)
                      +++|||||.|..|..|+.+-...|++|++.|.+++.-   .+...=....+   .+.++ ++.||+|=.   -||.+.+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~el-a~~~DViT~EfE~V~~~aL~   79 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALREL-AAKCDVITYEFENVPAEALE   79 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHH-HhhCCEEEEeeccCCHHHHH
Confidence            4689999999999999999999999999999887532   12111011122   23453 467887633   35555444


Q ss_pred             HHhh
Q 023897           82 EVLN   85 (275)
Q Consensus        82 ~v~~   85 (275)
                      .+..
T Consensus        80 ~l~~   83 (375)
T COG0026          80 KLAA   83 (375)
T ss_pred             HHHh
Confidence            4433

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.38  E-value=0.015  Score=56.74  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS--------   58 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~--------   58 (275)
                      +..+||+|||.|..|.+.|..|++.|++|++|++.+.                      .+...+.|+.+..        
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            3578999999999999999999999999999987752                      1223445653211        


Q ss_pred             ChHHHhccCCCEEEEecCch
Q 023897           59 DKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        59 ~~~~~~~~~aD~iilavp~~   78 (275)
                      +.++. ...+|.||+++...
T Consensus       388 ~~~~l-~~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDL-TSEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHH-HhcCCEEEEeCCCC
Confidence            23343 36789999998753

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.38  E-value=0.012  Score=54.94  Aligned_cols=61  Identities=21%  Similarity=0.422  Sum_probs=45.4

Q ss_pred             eEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecC-hHHHhccCCCEEEEe
Q 023897           13 KIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSD-KRAFLEADNDVILIS   74 (275)
Q Consensus        13 ~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~-~~~~~~~~aD~iila   74 (275)
                      +|-|||.|..|.+ +|+.|++.|++|+++|.+..  .....+.|+.+... ..+. +.++|+||++
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~-~~~~d~vV~s   65 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAEN-LDDADVVVVS   65 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHH-CCCCCEEEEC
Confidence            4889999999998 99999999999999997653  22234457765432 2232 3679999887

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.37  E-value=0.0098  Score=52.01  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc----Cc--eEecCh---HHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS----GI--SFFSDK---RAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~----g~--~~~~~~---~~~~~~~aD~iilavp~   77 (275)
                      ..+++.|+|+|-.|++++..|.+.|. +|++++|+.+.  +.+...    +.  ....+.   .+. ...+|+||-|+|.
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~-~~~~divINaTp~  204 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDV-IAAADGVVNATPM  204 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHH-HhhcCEEEEcCCC
Confidence            45689999999999999999999986 79999999753  222221    21  111121   222 3678999999996


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      .....--..++...+.++.++.|+.
T Consensus       205 Gm~~~~~~~~~~~~l~~~~~v~D~v  229 (283)
T PRK14027        205 GMPAHPGTAFDVSCLTKDHWVGDVV  229 (283)
T ss_pred             CCCCCCCCCCCHHHcCCCcEEEEcc
Confidence            5311000001111155677888875

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.019  Score=53.50  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--h---hHHHHcCceEe--cChHHHhccC-CCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--S---QLCHRSGISFF--SDKRAFLEAD-NDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~---~~a~~~g~~~~--~~~~~~~~~~-aD~iilav   75 (275)
                      ..++|.|+|.|.+|.+.|+.|++.|++|+++|++..  .   ....+.|+...  ....+. ... .|+||.+.
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~d~vV~s~   76 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLEL-LDEDFDLMVKNP   76 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHH-hcCcCCEEEECC
Confidence            457899999999999999999999999999998652  1   22334576543  223332 233 89888875

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.35  E-value=0.017  Score=56.50  Aligned_cols=67  Identities=22%  Similarity=0.384  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------C
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS--------D   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~--------~   59 (275)
                      ..++|+|||.|..|.+.|..|++.|++|+++++.+.                      .....+.|+.+..        +
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~  405 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDIS  405 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCC
Confidence            567999999999999999999999999999997642                      1123445664321        2


Q ss_pred             hHHHhccCCCEEEEecCc
Q 023897           60 KRAFLEADNDVILISTSI   77 (275)
Q Consensus        60 ~~~~~~~~aD~iilavp~   77 (275)
                      .++. ...+|.||+++..
T Consensus       406 ~~~~-~~~~DavilAtGa  422 (654)
T PRK12769        406 LESL-LEDYDAVFVGVGT  422 (654)
T ss_pred             HHHH-HhcCCEEEEeCCC
Confidence            2332 3578999999864

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.34  E-value=0.015  Score=50.89  Aligned_cols=76  Identities=12%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|+||| ...+|..++..|.+.    +..|+++...             +.++.+. .++||+||.|+.-..+  
T Consensus       158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------T~~l~~~-~~~ADIvVsAvGkp~~--  221 (297)
T PRK14168        158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------SKNLARH-CQRADILIVAAGVPNL--  221 (297)
T ss_pred             CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------CcCHHHH-HhhCCEEEEecCCcCc--
Confidence            45678999999 689999999999987    5788887533             1345554 4899999999986543  


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       +.. ..  +++|++++|++-
T Consensus       222 -i~~-~~--ik~gavVIDvGi  238 (297)
T PRK14168        222 -VKP-EW--IKPGATVIDVGV  238 (297)
T ss_pred             -cCH-HH--cCCCCEEEecCC
Confidence             111 23  789999999974

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.31  E-value=0.015  Score=51.76  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHH--HHhh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS--EVLN   85 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~--~v~~   85 (275)
                      ...+++.|.|.|-.|...|..++..|.+|+++..+|-+ ..|.-.|..+.+ .+++ +..+|++|-|+....+.  +-+.
T Consensus       207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~-m~~A-a~~gDifiT~TGnkdVi~~eh~~  284 (420)
T COG0499         207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT-MEEA-AKTGDIFVTATGNKDVIRKEHFE  284 (420)
T ss_pred             ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE-hHHh-hhcCCEEEEccCCcCccCHHHHH
Confidence            45678999999999999999999999999999999953 456667887754 4554 47899999999875432  2222


Q ss_pred             cCCCCCCCCCcEEEeCC
Q 023897           86 SLPVHCLQRRTLIADVL  102 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~  102 (275)
                      .     ++.+.|+.+.+
T Consensus       285 ~-----MkDgaIl~N~G  296 (420)
T COG0499         285 K-----MKDGAILANAG  296 (420)
T ss_pred             h-----ccCCeEEeccc
Confidence            2     67788888766

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.30  E-value=0.0059  Score=56.08  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999975

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.29  E-value=0.021  Score=50.48  Aligned_cols=78  Identities=22%  Similarity=0.328  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC---CCeEE-EEcCChh--hhHHHHcCc---eEecChHHHhccCC--CEEEEecCc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ---GHILR-ATSRTDH--SQLCHRSGI---SFFSDKRAFLEADN--DVILISTSI   77 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~---g~~V~-~~dr~~~--~~~a~~~g~---~~~~~~~~~~~~~a--D~iilavp~   77 (275)
                      ....|+||+|+|.|++-+++.|.-.   +|.|+ +++|+.+  .+.|+..++   +.+.+.+++ +++.  |+|.+++|.
T Consensus         4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeL-akd~~vDvVyi~~~~   82 (351)
T KOG2741|consen    4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEEL-AKDPEVDVVYISTPN   82 (351)
T ss_pred             CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHH-hcCCCcCEEEeCCCC
Confidence            3456899999999999999998653   57766 5788764  356777776   577888886 4555  999999999


Q ss_pred             hhHHHHhhcC
Q 023897           78 LSLSEVLNSL   87 (275)
Q Consensus        78 ~~~~~v~~~l   87 (275)
                      .+..+++--+
T Consensus        83 ~qH~evv~l~   92 (351)
T KOG2741|consen   83 PQHYEVVMLA   92 (351)
T ss_pred             ccHHHHHHHH
Confidence            8777776554

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.28  E-value=0.017  Score=53.96  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             CCCeEEEEcC----ChHHHHHHHHHHHCCC--eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGF----GPFGQFLAKTMIKQGH--ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~----G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ...+|+|||+    |.+|..+.+.|.+.||  +|+.+++...    .-.|+..+.+++++ -...|++++++|++.+.++
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~l-p~~~Dlavi~vp~~~~~~~   80 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEI-PDPVDLAVIVVPAKYVPQV   80 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHC-CCCCCEEEEecCHHHHHHH
Confidence            3468999998    8999999999999998  5665555432    12477788888884 4677999999999999999


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      ++++
T Consensus        81 l~e~   84 (447)
T TIGR02717        81 VEEC   84 (447)
T ss_pred             HHHH
Confidence            9988

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.28  E-value=0.016  Score=50.80  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCCh---hh--hHHHHc-----CceE--e--cC---hHHHhccCCCE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTD---HS--QLCHRS-----GISF--F--SD---KRAFLEADNDV   70 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~---~~--~~a~~~-----g~~~--~--~~---~~~~~~~~aD~   70 (275)
                      .+.+++.|+|+|.+|.+++..|.+.|.+ |++++|+.   +.  +.+.+.     ++..  .  ++   .++. +..+|+
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~-~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAE-IASSDI  202 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhh-hccCCE
Confidence            3456899999999999999999999985 99999985   21  122111     1111  1  11   1222 256799


Q ss_pred             EEEecCchhHHHHhh-cC-CCCCCCCCcEEEeCC
Q 023897           71 ILISTSILSLSEVLN-SL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        71 iilavp~~~~~~v~~-~l-~~~~l~~~~iv~d~~  102 (275)
                      ||-|||.......-. -+ +...+.++.++.|+.
T Consensus       203 lINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  236 (289)
T PRK12548        203 LVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV  236 (289)
T ss_pred             EEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence            999998753211000 01 001155667788865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.25  E-value=0.01  Score=41.22  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ||.|||.|.+|.-+|..|++.|.+|+++.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            689999999999999999999999999988763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.011  Score=51.39  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHH----CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIK----QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~----~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....+++.||| ...+|..++..|.+    .+..|+.+..+.             .++.+. .++||+||.|++...+  
T Consensus       154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~-~~~ADIVI~AvG~p~l--  217 (286)
T PRK14184        154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEE-CREADFLFVAIGRPRF--  217 (286)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCCCCc--
Confidence            45678999999 68899999999998    677888876442             245554 4899999999976543  


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +-.  ..  +++|.+++|++-
T Consensus       218 i~~--~~--vk~GavVIDVGi  234 (286)
T PRK14184        218 VTA--DM--VKPGAVVVDVGI  234 (286)
T ss_pred             CCH--HH--cCCCCEEEEeee
Confidence            111  22  788999999874

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.013  Score=51.31  Aligned_cols=76  Identities=11%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHH----CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIK----QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~----~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|.||| ...+|..++..|.+    .+..|+.+..+.             .++++. +++||+||.|++-..+  
T Consensus       156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~-~~~ADIvI~Avg~~~l--  219 (295)
T PRK14174        156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSY-TRQADILIAAIGKARF--  219 (295)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCccCc--
Confidence            45678999999 68899999999987    577888876542             244554 4899999999975532  


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +-.  ..  +++|.+++|++.
T Consensus       220 i~~--~~--vk~GavVIDVgi  236 (295)
T PRK14174        220 ITA--DM--VKPGAVVIDVGI  236 (295)
T ss_pred             cCH--HH--cCCCCEEEEeec
Confidence            112  23  788999999874

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.22  E-value=0.019  Score=53.52  Aligned_cols=65  Identities=23%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHH--cCceEecC--hHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHR--SGISFFSD--KRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~--~g~~~~~~--~~~~~~~~aD~iilav   75 (275)
                      ..++|.|+|.|..|.+.|+.|.+.|++|+++|.++..   ....+  .|+.+...  .+. ...++|+||++.
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~-~~~~~d~vv~sp   75 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA-LDNGFDILALSP   75 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH-HHhCCCEEEECC
Confidence            4578999999999999999999999999999987632   22222  36654321  222 236899999984

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.22  E-value=0.018  Score=51.33  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             EEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhh--hHHHHcC------------------ceEecChHHHhccCCCEE
Q 023897           14 IGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHS--QLCHRSG------------------ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~--~~a~~~g------------------~~~~~~~~~~~~~~aD~i   71 (275)
                      |||+|+|+||...++.+.+. +.+|++ .|.+++.  ..+...|                  +.+..+++++ ..++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeL-l~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDL-LEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHH-hhcCCEE
Confidence            68999999999999998765 467665 5655542  2333333                  2334467775 4789999


Q ss_pred             EEecCchh
Q 023897           72 LISTSILS   79 (275)
Q Consensus        72 ilavp~~~   79 (275)
                      +.|+|...
T Consensus        80 ve~Tp~~~   87 (333)
T TIGR01546        80 VDATPGGI   87 (333)
T ss_pred             EECCCCCC
Confidence            99999753

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.21  E-value=0.064  Score=49.58  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=44.6

Q ss_pred             CeEEEEcCChHHH-HHHHHHHHC-----CCeEEEEcCC-hh-hh----HH----HHcC----ceEecChHHHhccCCCEE
Q 023897           12 LKIGIIGFGPFGQ-FLAKTMIKQ-----GHILRATSRT-DH-SQ----LC----HRSG----ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus        12 ~~I~IIG~G~mG~-sla~~L~~~-----g~~V~~~dr~-~~-~~----~a----~~~g----~~~~~~~~~~~~~~aD~i   71 (275)
                      |||+|||+|..-+ .+...|...     +-+|+++|.+ ++ +.    .+    .+.|    +..+++.+++ +++||+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~a-l~gadfV   79 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREA-LEGADFV   79 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHH-hCCCCEE
Confidence            6999999988633 344555542     2489999999 64 21    11    2233    3567889997 5999999


Q ss_pred             EEecCc
Q 023897           72 LISTSI   77 (275)
Q Consensus        72 ilavp~   77 (275)
                      |.+.-.
T Consensus        80 i~~~~v   85 (419)
T cd05296          80 FTQIRV   85 (419)
T ss_pred             EEEEee
Confidence            999765

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.20  E-value=0.036  Score=49.97  Aligned_cols=67  Identities=16%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHH-cCceEecChHH--------Hhc--cCCCEEEEecCchh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHR-SGISFFSDKRA--------FLE--ADNDVILISTSILS   79 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~-~g~~~~~~~~~--------~~~--~~aD~iilavp~~~   79 (275)
                      ++.|+|+|.||...+..++..|. +|++.|++++ ++.|++ .|.....+..+        .+.  ..+|++|-|+....
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            79999999999999888888885 7888999985 577777 45543222211        011  24899999999543

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.20  E-value=0.0073  Score=55.10  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++|.|||+|..|.++|..|++.|++|+++++++.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            46899999999999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.19  E-value=0.027  Score=52.82  Aligned_cols=68  Identities=19%  Similarity=0.349  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------C
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS--------D   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~--------~   59 (275)
                      ...+|.|||.|..|.+.|..|++.|++|+++++.+.                      .+...+.|+.+..        .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  219 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS  219 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence            557899999999999999999999999999987641                      1234456764321        2


Q ss_pred             hHHHhccCCCEEEEecCch
Q 023897           60 KRAFLEADNDVILISTSIL   78 (275)
Q Consensus        60 ~~~~~~~~aD~iilavp~~   78 (275)
                      .++. ...+|.||+|+...
T Consensus       220 ~~~~-~~~~D~vilAtGa~  237 (467)
T TIGR01318       220 LDDL-LEDYDAVFLGVGTY  237 (467)
T ss_pred             HHHH-HhcCCEEEEEeCCC
Confidence            2332 24789999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.05  Score=49.99  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCChHHHHHH--HHHHHC----CCeEEEEcCChhh-h----HH----HHcCc----eEecChHHHhccCCC
Q 023897            9 SSTLKIGIIGFGPFGQFLA--KTMIKQ----GHILRATSRTDHS-Q----LC----HRSGI----SFFSDKRAFLEADND   69 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla--~~L~~~----g~~V~~~dr~~~~-~----~a----~~~g~----~~~~~~~~~~~~~aD   69 (275)
                      ++++||+|||+|..+...-  -.+.+.    +.++.++|.++.. +    .+    .+.|.    ..++|.+++ +++||
T Consensus         1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eA-l~gAd   79 (442)
T COG1486           1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREA-LEGAD   79 (442)
T ss_pred             CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHH-hcCCC
Confidence            3567999999998776532  122221    3489999999842 2    11    22343    567899997 59999


Q ss_pred             EEEEecCchh
Q 023897           70 VILISTSILS   79 (275)
Q Consensus        70 ~iilavp~~~   79 (275)
                      .|+.++-+..
T Consensus        80 fVi~~~rvG~   89 (442)
T COG1486          80 FVITQIRVGG   89 (442)
T ss_pred             EEEEEEeeCC
Confidence            9999988754

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.13  E-value=0.017  Score=50.49  Aligned_cols=77  Identities=13%  Similarity=0.214  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|.||| ...+|..++..|.+.    +..|+++....             .++.+. .++||+||.|++-..+. 
T Consensus       154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~-~~~ADIvIsAvGkp~~i-  218 (293)
T PRK14185        154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKE-CLEADIIIAALGQPEFV-  218 (293)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHH-HhhCCEEEEccCCcCcc-
Confidence            45678999999 688999999999987    46788774321             345554 48999999999976531 


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                        .. ..  +++|++++|++..
T Consensus       219 --~~-~~--vk~gavVIDvGin  235 (293)
T PRK14185        219 --KA-DM--VKEGAVVIDVGTT  235 (293)
T ss_pred             --CH-HH--cCCCCEEEEecCc
Confidence              11 22  7889999999853

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.12  E-value=0.009  Score=54.35  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +...+|.|||+|..|.++|..|++.|++|.++++++
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            445679999999999999999999999999999874

>PRK06753 hypothetical protein; Provisional

Probab=96.11  E-value=0.0078  Score=54.44  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=31.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |+|.|||+|.-|.++|..|+++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998763

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.09  E-value=0.026  Score=50.74  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=43.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC----------CCeEE-EEcCChh--------h----hHHHHcCc-e------EecCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ----------GHILR-ATSRTDH--------S----QLCHRSGI-S------FFSDK   60 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~----------g~~V~-~~dr~~~--------~----~~a~~~g~-~------~~~~~   60 (275)
                      .+||+|+|+|.||+.+++.|.+.          +.+|+ ++|++..        .    ..+.+.+. .      .+.+.
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG   81 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence            46899999999999999999765          34555 4565321        1    11222221 1      12366


Q ss_pred             HHHhc-cCCCEEEEecCch
Q 023897           61 RAFLE-ADNDVILISTSIL   78 (275)
Q Consensus        61 ~~~~~-~~aD~iilavp~~   78 (275)
                      ++++. .+.|+|+.|+|+.
T Consensus        82 ~ell~~~~~DvVvd~T~s~  100 (341)
T PRK06270         82 LEVIRSVDADVVVEATPTN  100 (341)
T ss_pred             HHHhhccCCCEEEECCcCc
Confidence            66431 3679999999974

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.07  E-value=0.0096  Score=54.34  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ....+|.|||+|..|.++|..|+++|++|.++++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            445689999999999999999999999999999864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.07  E-value=0.01  Score=45.80  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ..||+|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999997 799999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.07  E-value=0.024  Score=48.96  Aligned_cols=77  Identities=10%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ....+++.|||- ..+|..|+..|...++.|+++....             .++.+. .++||+++.|+.-..+..   .
T Consensus       153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~-~k~ADIvv~AvG~p~~i~---~  215 (283)
T COG0190         153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASI-TKNADIVVVAVGKPHFIK---A  215 (283)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHH-hhhCCEEEEecCCccccc---c
Confidence            456789999995 5679999999999999999987542             244553 589999999998654321   1


Q ss_pred             CCCCCCCCCcEEEeCCCC
Q 023897           87 LPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~  104 (275)
                       ..  +++|.+++|++..
T Consensus       216 -d~--vk~gavVIDVGin  230 (283)
T COG0190         216 -DM--VKPGAVVIDVGIN  230 (283)
T ss_pred             -cc--ccCCCEEEecCCc
Confidence             23  7899999999853

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.06  E-value=0.0089  Score=54.89  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            589999999999999999999999999999975

>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E

Probab=96.05  E-value=0.013  Score=43.45  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHH-HHCHHHHH
Q 023897          173 MSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLY-IHNRFAKQ  241 (275)
Q Consensus       173 ~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~-~~N~~~~~  241 (275)
                      +++++.|.+++++++.|.+++.   ++.+    .|++.   ..++...|.+..++.... +.+|.-+.+-+ ..+..+.+
T Consensus         1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~-~~~~~~l~~~v~tPgG~T~~   79 (107)
T PF14748_consen    1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEES-GRSPAELRDEVTTPGGTTIA   79 (107)
T ss_dssp             -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHC-SS-HHHHHHHHS-TTSHHHH
T ss_pred             CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHhhhccCCCCcHHH
Confidence            4678899999999999977543   4444    35543   468899999999999975 54665555544 45667789


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          242 ELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       242 ~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      .|+.|.+.  .+++.+.+..++++.+
T Consensus        80 gl~~L~~~--~~~~~~~~a~~aa~~R  103 (107)
T PF14748_consen   80 GLEVLEKG--GLRAAIMEALEAAVER  103 (107)
T ss_dssp             HHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC--CHHHHHHHHHHHHHHH
Confidence            99999884  6788888777776543

...

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.05  E-value=0.024  Score=49.67  Aligned_cols=76  Identities=14%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ....++|.||| ...+|..+|..|.+.    +..|+++...             +.++.+. .++||+||.|+.-..+  
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~~l~~~-~~~ADIvIsAvGkp~~--  217 (297)
T PRK14167        154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------TDDLAAK-TRRADIVVAAAGVPEL--  217 (297)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc--
Confidence            45678999999 688999999999887    6788887432             1345554 4899999999886542  


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       +.. ..  +++|.+++|++-
T Consensus       218 -i~~-~~--ik~gaiVIDvGi  234 (297)
T PRK14167        218 -IDG-SM--LSEGATVIDVGI  234 (297)
T ss_pred             -cCH-HH--cCCCCEEEEccc
Confidence             111 23  788999999983

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.02  E-value=0.011  Score=45.93  Aligned_cols=32  Identities=16%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ||.|||+|.+|+.+++.|...|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            68999999999999999999997 799999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.02  E-value=0.11  Score=43.74  Aligned_cols=76  Identities=24%  Similarity=0.265  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      +.++|.|||.|.+|..=+..|.+.|.+|+++.+.-  +.. .+....++...   ...+  +.++++||.||....+..-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~d--l~g~~LViaATdD~~vN~~  101 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEF--IKDKHLIVIATDDEKLNNK  101 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH--hCCCcEEEECCCCHHHHHH
Confidence            46789999999999999999999999999998764  332 23322332211   2334  3789999999998876655


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus       102 I~~~  105 (223)
T PRK05562        102 IRKH  105 (223)
T ss_pred             HHHH
Confidence            5554

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.024  Score=52.81  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHH--cCceEec---ChHHHhccCCCEEEEe
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHR--SGISFFS---DKRAFLEADNDVILIS   74 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~--~g~~~~~---~~~~~~~~~aD~iila   74 (275)
                      -.|+|+|.|..|.++|+.|.+.|++|+++|..+..   ....+  .|+.+..   +.+.  +.++|+||++
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--~~~~d~vV~s   75 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCEL--LVQASEIIIS   75 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHH--hcCCCEEEEC
Confidence            46999999999999999999999999999976531   22222  3775532   3333  3689998887

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.99  E-value=0.018  Score=51.98  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHH-HCCCe---EEEEcCChh--h-hHHHHcCceEec-ChHHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGIIG-FGPFGQFLAKTMI-KQGHI---LRATSRTDH--S-QLCHRSGISFFS-DKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~-~~g~~---V~~~dr~~~--~-~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ++|+|+| +|.+|+.|.+.|. +..+.   +..++.+..  . .........+.. +..+. ..+.|++|.|.+.+...+
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~-~~~vDivffa~g~~~s~~   79 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDA-LKALDIIITCQGGDYTNE   79 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCccccc-ccCCCEEEEcCCHHHHHH
Confidence            4899999 5999999999998 55553   444433221  1 111111111111 11112 378999999999987777


Q ss_pred             HhhcCCCCCCCCC--cEEEeCCC
Q 023897           83 VLNSLPVHCLQRR--TLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~--~iv~d~~s  103 (275)
                      +...+    ...|  ++++|.+|
T Consensus        80 ~~p~~----~~aG~~~~VIDnSS   98 (366)
T TIGR01745        80 IYPKL----RESGWQGYWIDAAS   98 (366)
T ss_pred             HHHHH----HhCCCCeEEEECCh
Confidence            77765    3457  78999876

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.021  Score=52.55  Aligned_cols=63  Identities=16%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHh-ccCCCEEEEe--cCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFL-EADNDVILIS--TSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~-~~~aD~iila--vp~   77 (275)
                      |+|.|+|+|.-|.++|+.|. .|++|+++|.++......+.|+... . .+.. ..++|+||.+  +|+
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~   66 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPP   66 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEe-c-HHHcCcCCCCEEEECCCCCC
Confidence            68999999999999999999 9999999996543221223476553 2 2211 1468988877  444

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.95  E-value=0.041  Score=53.85  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45799999999999999999999999999998764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.92  E-value=0.021  Score=52.86  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-----hHHHHcCceEecC--hHHHhccCCCEEEEe--cCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-----QLCHRSGISFFSD--KRAFLEADNDVILIS--TSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-----~~a~~~g~~~~~~--~~~~~~~~aD~iila--vp~   77 (275)
                      .++||+|+|+|.-|.+.++.|.+.|++|+++|.++..     ......++.+...  ..+. ..++|+|+.+  +|+
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~-~~~~d~vV~SPGi~~   81 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDED-LAEFDLVVKSPGIPP   81 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhc-cccCCEEEECCCCCC
Confidence            3789999999999999999999999999999977632     1222345543221  1122 3678999987  454

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=95.91  E-value=0.013  Score=55.97  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             CCcCCCC-CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            1 MAVSSPS-SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         1 ~~~~~~~-~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+.|+++ ++...+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus        12 ~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         12 PHADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCccccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4556643 3456689999999999999999999999999999875

>PRK05868 hypothetical protein; Validated

Probab=95.91  E-value=0.011  Score=53.65  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |++|.|||.|..|.++|..|++.|++|+++++.+
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~   34 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP   34 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            4689999999999999999999999999999875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.89  E-value=0.015  Score=39.28  Aligned_cols=30  Identities=30%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             EEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           16 IIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        16 IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |||+|.-|.+.|..|++.|++|.++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999999874

...

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.88  E-value=0.012  Score=53.51  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            3589999999999999999999999999999753

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.86  E-value=0.15  Score=42.47  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hh-hHHHHcCceE---ecChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HS-QLCHRSGISF---FSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~-~~a~~~g~~~---~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ....++|.|||.|.+|..=++.|.+.|.+|+++..+.  +. ....+.++..   .-+.++ + ..+++||.||+.....
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~-~~~~lviaAt~d~~ln   86 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-L-DDAFLVIAATDDEELN   86 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-h-cCceEEEEeCCCHHHH
Confidence            3467899999999999999999999999999998765  22 2333334321   123334 2 5699999999998765


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +-+.+.
T Consensus        87 ~~i~~~   92 (210)
T COG1648          87 ERIAKA   92 (210)
T ss_pred             HHHHHH
Confidence            554444

>PRK06847 hypothetical protein; Provisional

Probab=95.86  E-value=0.013  Score=52.94  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++++|.|||+|.-|.++|..|++.|++|+++++++
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            45689999999999999999999999999999875

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.83  E-value=0.013  Score=51.92  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||+|.-|.++|..|+++|++|.++++++
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence            479999999999999999999999999999875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.82  E-value=0.013  Score=53.71  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ....+|.|||+|.-|.++|..|++.|++|+++++.+
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            345689999999999999999999999999998765

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.82  E-value=0.021  Score=50.94  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=53.5

Q ss_pred             eEEEEcCChHHHHHHHHHHHCC----CeEEEE-cCChh--hhHHHHcC-----------------------ceEe--cCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQG----HILRAT-SRTDH--SQLCHRSG-----------------------ISFF--SDK   60 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g----~~V~~~-dr~~~--~~~a~~~g-----------------------~~~~--~~~   60 (275)
                      ||+|+|+|++|+.+.+.|.+.+    ++|... |....  .....+.+                       +.+.  .++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p   80 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP   80 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence            6999999999999999988753    566654 33221  12222211                       1111  133


Q ss_pred             HHHh--ccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           61 RAFL--EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        61 ~~~~--~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ++.-  ..+.|++|.|++.....+.....    +..|...+++++
T Consensus        81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~----l~aGa~~V~~Sa  121 (325)
T TIGR01532        81 EALPWRALGVDLVLDCTGVYGNREQGERH----IRAGAKRVLFSH  121 (325)
T ss_pred             hhccccccCCCEEEEccchhccHHHHHHH----HHcCCeEEEecC
Confidence            3311  13789999999987766655554    556777777664

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=95.82  E-value=0.1  Score=46.15  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~   85 (275)
                      +..||.|-| +|.-|+..++...+.|-+|+ ++++..--..-...|+.++.+..++ .+.  .|+.+++||+..+.+.+.
T Consensus        28 ~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea-~~~~~~D~avI~VPa~~v~dai~  106 (317)
T PTZ00187         28 KNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEA-KKATGADASVIYVPPPHAASAII  106 (317)
T ss_pred             CCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHH-hcccCCCEEEEecCHHHHHHHHH
Confidence            346899999 79999999999999998765 4555441111112378888999986 455  899999999999888888


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      +.
T Consensus       107 Ea  108 (317)
T PTZ00187        107 EA  108 (317)
T ss_pred             HH
Confidence            77

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.81  E-value=0.043  Score=48.98  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC------C--CeEE-EEcCChhh--------hHH---HHcC-ce--Eec--ChHHHhcc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ------G--HILR-ATSRTDHS--------QLC---HRSG-IS--FFS--DKRAFLEA   66 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~------g--~~V~-~~dr~~~~--------~~a---~~~g-~~--~~~--~~~~~~~~   66 (275)
                      |||+|||+|++|+.+++.|.++      |  .+|+ ++|++...        ...   .+.| +.  ..+  +.++.+..
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            5899999999999999999873      3  4544 45655311        110   1112 11  112  45554335


Q ss_pred             CCCEEEEecCc
Q 023897           67 DNDVILISTSI   77 (275)
Q Consensus        67 ~aD~iilavp~   77 (275)
                      ++|++|=|+|.
T Consensus        81 ~~DVvVE~t~~   91 (326)
T PRK06392         81 KPDVIVDVTPA   91 (326)
T ss_pred             CCCEEEECCCC
Confidence            78999999974

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.78  E-value=0.028  Score=52.56  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh----HHHHcCceEecC--hH-----HHhccCCCEEEEec
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ----LCHRSGISFFSD--KR-----AFLEADNDVILIST   75 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~----~a~~~g~~~~~~--~~-----~~~~~~aD~iilav   75 (275)
                      ||.|||.|..|.+.|+.|.+.|++|.++|+++.  ..    .....|+++...  .+     .. ..+.|+|+++-
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~-~~~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPW-LDQPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHH-hhcCCEEEECC
Confidence            799999999999999999999999999998763  21    123457755321  11     22 36789998853

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.75  E-value=0.016  Score=46.88  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ||+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            68999999999999999999998 699999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.74  E-value=0.05  Score=52.34  Aligned_cols=69  Identities=19%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh----------------------hhhHHHHcCceEec------C-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD----------------------HSQLCHRSGISFFS------D-   59 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~----------------------~~~~a~~~g~~~~~------~-   59 (275)
                      ....+|.|||+|..|.+.|..|++.|++|+++++.+                      ....+.+.|+....      + 
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            356789999999999999999999999999998642                      12345566764221      1 


Q ss_pred             -hHHHhccCCCEEEEecCch
Q 023897           60 -KRAFLEADNDVILISTSIL   78 (275)
Q Consensus        60 -~~~~~~~~aD~iilavp~~   78 (275)
                       .++. ...+|.||+|+...
T Consensus       215 ~~~~~-~~~~D~Vi~AtG~~  233 (564)
T PRK12771        215 TLEQL-EGEFDAVFVAIGAQ  233 (564)
T ss_pred             CHHHH-HhhCCEEEEeeCCC
Confidence             2222 24689999998764

>PRK06185 hypothetical protein; Provisional

Probab=95.74  E-value=0.015  Score=53.27  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .....|.|||.|..|.++|..|++.|++|+++++++
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            344689999999999999999999999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.73  E-value=0.015  Score=52.98  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC---CCeEEEEcCC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ---GHILRATSRT   43 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~---g~~V~~~dr~   43 (275)
                      |.+++|.|||+|..|.++|..|+++   |++|.++++.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3557899999999999999999998   9999999984

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.71  E-value=0.046  Score=49.74  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +++|+|||.|..|..++.+..+.|++|+++|.+++
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~   36 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD   36 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            46899999999999999999999999999998864

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=95.70  E-value=0.08  Score=45.41  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh----HHHHcCc--------eEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ----LCHRSGI--------SFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~----~a~~~g~--------~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...||.|+|.|.+|.+.|..+..+|.  ++.+.|.++...    ...+.|.        ....|...  ..+++++|+..
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~--sa~S~lvIiTA   96 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSV--SANSKLVIITA   96 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccc--cCCCcEEEEec
Confidence            35799999999999999999988885  899999887531    1223332        22223332  36899999987


Q ss_pred             Cc
Q 023897           76 SI   77 (275)
Q Consensus        76 p~   77 (275)
                      ..
T Consensus        97 Ga   98 (332)
T KOG1495|consen   97 GA   98 (332)
T ss_pred             CC
Confidence            65

>PRK08013 oxidoreductase; Provisional

Probab=95.67  E-value=0.016  Score=53.08  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV   36 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence            3589999999999999999999999999999875

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.67  E-value=0.049  Score=48.24  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=48.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-h---HHHHc-C-----------ceEecChHHHhccCCCEEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-Q---LCHRS-G-----------ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~---~a~~~-g-----------~~~~~~~~~~~~~~aD~ii   72 (275)
                      ..++|+|-| .|-+|+++.+.|.++||.|.+.-|+++. +   ...+. |           +.-..+.+++ +++||.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~a-i~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKA-IDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHH-HhCCCEEE
Confidence            568999999 5999999999999999999999998842 1   22221 1           1223456776 48999988


Q ss_pred             Eec
Q 023897           73 IST   75 (275)
Q Consensus        73 lav   75 (275)
                      =+-
T Consensus        84 H~A   86 (327)
T KOG1502|consen   84 HTA   86 (327)
T ss_pred             EeC
Confidence            653

>PRK07538 hypothetical protein; Provisional

Probab=95.66  E-value=0.015  Score=53.55  Aligned_cols=33  Identities=27%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+|.|||+|.-|.++|..|+++|++|+++++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            689999999999999999999999999999875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.65  E-value=0.016  Score=52.94  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      .++|.|||+|..|.++|..|+++|++|.++++.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            468999999999999999999999999999997

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.63  E-value=0.059  Score=50.06  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEec--ChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFS--DKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~--~~~~~~~~~aD~iila   74 (275)
                      ..++|.|+|.|..|.+.++.|++.|++|+++|.++..  ....+.|+.+..  ..... +++.|++|.+
T Consensus         5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~-~~~~d~vv~s   72 (438)
T PRK03806          5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEW-LLAADLIVAS   72 (438)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHH-hcCCCEEEEC
Confidence            3568999999999999999999999999999976531  112334765432  12222 3678876665

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.61  E-value=0.12  Score=46.45  Aligned_cols=69  Identities=19%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcC---Ch-hhhHHHHcCceEecChHHH-----hccCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSR---TD-HSQLCHRSGISFFSDKRAF-----LEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr---~~-~~~~a~~~g~~~~~~~~~~-----~~~~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...+..++..|.+|+++++   ++ ..+.+++.|+......++-     .....|+||-|+...
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            346899999999999999999999999999988   34 3456777777543211100     013467888877753

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.014  Score=50.98  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHHcCce---Ee---cChHHHhccCCCEEEEecCc--hhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHRSGIS---FF---SDKRAFLEADNDVILISTSI--LSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~~g~~---~~---~~~~~~~~~~aD~iilavp~--~~~   80 (275)
                      .-||.|||.|.+|+--|+.....|-+|++.|+|.+. . .....+.+   ..   .++++. +.++|++|=+|-.  ...
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~-v~~aDlvIgaVLIpgaka  246 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEA-VKKADLVIGAVLIPGAKA  246 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHH-hhhccEEEEEEEecCCCC
Confidence            458999999999999999988889999999999753 2 22222322   22   234554 4899999988643  222


Q ss_pred             HH-HhhcC-CCCCCCCCcEEEeCCC
Q 023897           81 SE-VLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        81 ~~-v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .. +.++. ..  +++|.+++|++-
T Consensus       247 PkLvt~e~vk~--MkpGsVivDVAi  269 (371)
T COG0686         247 PKLVTREMVKQ--MKPGSVIVDVAI  269 (371)
T ss_pred             ceehhHHHHHh--cCCCcEEEEEEE
Confidence            22 33343 44  789999999873

>PRK07045 putative monooxygenase; Reviewed

Probab=95.55  E-value=0.02  Score=52.22  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||+|..|.++|..|+++|++|+++++.+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA   38 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            45689999999999999999999999999999776

>PRK07588 hypothetical protein; Provisional

Probab=95.53  E-value=0.018  Score=52.51  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++|.|||.|..|.++|..|++.|++|+++++.+
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~   33 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP   33 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence            589999999999999999999999999998765

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.51  E-value=0.02  Score=52.38  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3589999999999999999999999999999875

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.44  E-value=0.028  Score=48.84  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +|.|+| +|.+|+.+++.|.+.|++|.+..|+++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~   34 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS   34 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            588999 599999999999999999999999974

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.35  E-value=0.028  Score=55.13  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||.|.+|.+.|..|++.|++|+++|++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            589999999999999999999999999999874

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.35  E-value=0.023  Score=52.04  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=31.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .||.|||+|.-|.++|..|++.|++|.++++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            689999999999999999999999999999875

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.34  E-value=0.038  Score=49.57  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH--------CCC--eEE-EEcCChh--------hhH----HHHcCc--eEe-------c
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK--------QGH--ILR-ATSRTDH--------SQL----CHRSGI--SFF-------S   58 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~--------~g~--~V~-~~dr~~~--------~~~----a~~~g~--~~~-------~   58 (275)
                      .++|+|+|+|++|+.+++.|.+        .|.  +|. +.|++..        ...    ..+.+.  ...       .
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~   81 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF   81 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence            4799999999999999999877        453  444 3454421        111    111111  111       1


Q ss_pred             ChHHHh-ccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEE
Q 023897           59 DKRAFL-EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIA   99 (275)
Q Consensus        59 ~~~~~~-~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~   99 (275)
                      +.++.+ ..++|+||=+++.+...++....    +..|.-++
T Consensus        82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l~~G~~VV  119 (336)
T PRK08374         82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA----LKEGKSVV  119 (336)
T ss_pred             CHHHHHhcCCCCEEEECCCcHHHHHHHHHH----HhhCCcEE
Confidence            455543 14789999999887766666665    34454444

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.34  E-value=0.025  Score=51.55  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            44689999999999999999999999999999764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.34  E-value=0.032  Score=52.24  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..++|+|||+|.-|.+.|+.|.+.|++|+++++++.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~   44 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ   44 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3457899999999999999999999999999998753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.33  E-value=0.023  Score=52.86  Aligned_cols=38  Identities=29%  Similarity=0.520  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+..++|+|||+|.-|.+.|++|.+.|++++++.|++.
T Consensus         3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            45568999999999999999999999999999988764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.31  E-value=0.024  Score=51.50  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      +.+|.|||+|..|.++|..|++.|++|+++++.
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            357999999999999999999999999999975

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.31  E-value=0.026  Score=51.01  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||.|.+|.++|..|++.|++|+++++..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            469999999999999999999999999999875

>PRK06126 hypothetical protein; Provisional

Probab=95.29  E-value=0.027  Score=53.80  Aligned_cols=35  Identities=31%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34689999999999999999999999999999775

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.27  E-value=0.13  Score=45.92  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEec-----ChHHHhc--cCCCEEEEecCc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFS-----DKRAFLE--ADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~-----~~~~~~~--~~aD~iilavp~   77 (275)
                      ..+|.|+|+|.+|...+..++..|. +|++.+++++ .+.+.+.|+...-     +..+...  ...|++|-|+..
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~  245 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH  245 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence            5689999999999999998888897 6888998884 5677778874221     1222110  125777777765

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.23  E-value=0.032  Score=50.52  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +.+++|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            356789999999999999999999999999999876

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.21  E-value=0.031  Score=49.58  Aligned_cols=32  Identities=31%  Similarity=0.418  Sum_probs=30.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence            48999999999999999999999999999983

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.19  E-value=0.031  Score=51.27  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      ..+|.|||+|..|.++|..|++.|++|+++++.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            457999999999999999999999999999985

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.18  E-value=0.19  Score=43.56  Aligned_cols=46  Identities=17%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+|.+|...+..++..|.+ |++.+++++ .+.+++.|+.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT  167 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            345899999999999999999889986 888888874 4667777763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK09126 hypothetical protein; Provisional

Probab=95.17  E-value=0.029  Score=51.11  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|.-|.++|..|++.|++|+++++.+
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4679999999999999999999999999999864

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.16  E-value=0.027  Score=51.80  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~   45 (275)
                      |||.|||+|.-|.++|..|+++| ++|+++++.+.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            68999999999999999999998 49999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.15  E-value=0.04  Score=51.48  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+.|.|||+|.-|.+.|..|+++|++|.++++.+
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            44689999999999999999999999999999764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.13  E-value=0.044  Score=49.79  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...|||.|.|. |.+|+.+++.|.+.||+|++.+|..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            46789999995 9999999999999999999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.11  E-value=0.029  Score=51.37  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            469999999999999999999999999998764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.09  E-value=0.059  Score=49.12  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT   43 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~   43 (275)
                      ...||.|+|+|.+|+.++..|+..|. +++++|++
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45689999999999999999999997 79999987

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.06  E-value=0.029  Score=50.73  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||+|.-|.++|..|+++|++|+++++.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~   32 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATP   32 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            38999999999999999999999999999885

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.00  E-value=0.036  Score=51.14  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      +++|.|||+|..|...|..|++.|++|.+++..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r   34 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR   34 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            468999999999999999999999999999854

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.99  E-value=0.093  Score=53.28  Aligned_cols=71  Identities=30%  Similarity=0.512  Sum_probs=53.3

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh----------------------hHHHHcCceEe------
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS----------------------QLCHRSGISFF------   57 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~----------------------~~a~~~g~~~~------   57 (275)
                      |......+|+|||.|.-|.+-|..|-+.||.|++|.|+...                      ....+.|+.+.      
T Consensus      1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig 1859 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG 1859 (2142)
T ss_pred             cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccc
Confidence            34567889999999999999999999999999999887421                      01123466432      


Q ss_pred             --cChHHHhccCCCEEEEecCc
Q 023897           58 --SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        58 --~~~~~~~~~~aD~iilavp~   77 (275)
                        -+++++ .+..|.|++|+..
T Consensus      1860 k~vs~d~l-~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1860 KHVSLDEL-KKENDAIVLATGS 1880 (2142)
T ss_pred             ccccHHHH-hhccCeEEEEeCC
Confidence              245674 5789999999765

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=94.99  E-value=0.036  Score=50.67  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            4689999999999999999999999999999875

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=94.97  E-value=0.036  Score=50.63  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~   44 (275)
                      ..|.|||+|.+|.++|..|++.  |++|+++++.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            5799999999999999999998  99999999874

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.95  E-value=0.045  Score=46.25  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            45689999999999999999999997 788888764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=94.94  E-value=0.21  Score=44.04  Aligned_cols=75  Identities=13%  Similarity=0.182  Sum_probs=57.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~   85 (275)
                      +..||.|.| +|..|+..-..+...|-+|. +++.....  ..-.|+..+.++.++ .+.  .|+.++++|...+.++++
T Consensus        11 ~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~--~~i~G~~~y~sv~dl-p~~~~~DlAvI~vPa~~v~~al~   87 (300)
T PLN00125         11 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLGLPVFNTVAEA-KAETKANASVIYVPPPFAAAAIL   87 (300)
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCC--ceEcCeeccCCHHHH-hhccCCCEEEEecCHHHHHHHHH
Confidence            346899999 89999999999999987765 45555211  112477888888885 343  699999999999999998


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      +.
T Consensus        88 e~   89 (300)
T PLN00125         88 EA   89 (300)
T ss_pred             HH
Confidence            87

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.93  E-value=0.097  Score=48.97  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-CceEe-cChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-GISFF-SDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-g~~~~-~~~~~~~~~~aD~iila   74 (275)
                      +....||+|+|+|.-|.+.++.|.+ |.+|+++|.++. .....+. ..... ....+. ..++|+||++
T Consensus         3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vV~S   70 (454)
T PRK01368          3 SHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSR-WQNLDKIVLS   70 (454)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhH-hhCCCEEEEC
Confidence            3456789999999999999999995 999999996542 1111111 11111 112232 3679998887

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.90  E-value=0.077  Score=48.25  Aligned_cols=35  Identities=14%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            34689999999999999999999996 899998873

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.90  E-value=0.22  Score=44.41  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      ..+|.|.|+|.+|...+..++..|.+|++.+++++ .+.+++.|+...-+..+......|+++.++...
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~  234 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG  234 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH
Confidence            45899999999999888888888988998898874 577888887432221110113467777766543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.89  E-value=0.032  Score=49.27  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCe---EEEEcCC---hhhh-HHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHI---LRATSRT---DHSQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~---V~~~dr~---~~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ..++|+| | +|.+|..|-..|.+.++.   +..++..   .... ......+.+. ++++...++.|++|+ .+.....
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~-~l~~~~f~~vDia~f-ag~~~s~   78 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQI-APEEVEWADFNYVFF-AGKMAQA   78 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEE-ECCccCcccCCEEEE-cCHHHHH
Confidence            4578999 9 599999999999999873   4444332   2111 0011111111 111112378999999 8877666


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.....    ...|++++|.+|
T Consensus        79 ~~ap~a----~~aG~~VIDnSs   96 (322)
T PRK06901         79 EHLAQA----AEAGCIVIDLYG   96 (322)
T ss_pred             HHHHHH----HHCCCEEEECCh
Confidence            665544    457899999876

>PLN02477 glutamate dehydrogenase

Probab=94.87  E-value=0.088  Score=48.41  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcCC
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSRT   43 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr~   43 (275)
                      .+.+.++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus       202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            35677899999999999999999999999888 56665

>PRK06184 hypothetical protein; Provisional

Probab=94.86  E-value=0.041  Score=52.08  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34689999999999999999999999999999864

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.061  Score=45.08  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..++|.|+| .|.+|..+++.|.+.|++|++.+|++.
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~   41 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK   41 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence            456899999 599999999999999999999999874

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.82  E-value=0.11  Score=48.74  Aligned_cols=65  Identities=12%  Similarity=0.055  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhH--HHHcCc-eEec-ChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQL--CHRSGI-SFFS-DKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~--a~~~g~-~~~~-~~~~~~~~~aD~iilav   75 (275)
                      ..+||+|+|+|.-|.+.++.|.+.|.+|+++|.++.  ...  ..+.+. .... ...+. +.++|+||.+-
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~d~vV~Sp   77 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQR-LAAFDVVVKSP   77 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHH-ccCCCEEEECC
Confidence            356899999999999999999999999999996542  111  122233 2211 12232 36899998873

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=94.81  E-value=0.039  Score=53.80  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..+|.|||+|..|.++|.+|++.|++|.+++|++
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45789999999999999999999999999999864

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.81  E-value=0.054  Score=46.18  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+++|.|+| .|.+|+.+++.|.+.|++|++..|+++
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~   52 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD   52 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            3568999999 599999999999999999999998874

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.80  E-value=0.086  Score=48.30  Aligned_cols=68  Identities=13%  Similarity=0.027  Sum_probs=46.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILS   79 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~   79 (275)
                      +.+|-|+|.|.+|..+++.|.+.|+++++.+.++. +...+.|..+ .   ++.   +++-+++|+.++++++.+.
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~-~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~  314 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL-EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDA  314 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh-hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence            45699999999999999999999999999887642 2222233311 1   122   2222368888888888764

>PRK12828 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.064  Score=44.78  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...++|.|.| .|.+|.++++.|.+.|++|++.+|++.
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            4567899999 599999999999999999999999874

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.77  E-value=0.32  Score=45.57  Aligned_cols=90  Identities=10%  Similarity=0.115  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ....++|.|||.|.++..=++.|.+.|.+|+++.+.-  +.. .+.+..++...   ...+  ++++++||.||....+.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~d--l~~~~lv~~at~d~~~n   86 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESL--LDTCWLAIAATDDDAVN   86 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH--hCCCEEEEECCCCHHHh
Confidence            3567899999999999999999999999999997653  332 22222332211   2233  37999999999987665


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .-+...    .+...+++++..
T Consensus        87 ~~i~~~----a~~~~~lvN~~d  104 (457)
T PRK10637         87 QRVSEA----AEARRIFCNVVD  104 (457)
T ss_pred             HHHHHH----HHHcCcEEEECC
Confidence            444443    222345565543

>PLN02985 squalene monooxygenase

Probab=94.75  E-value=0.055  Score=51.41  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||+|..|.++|..|+++|++|.++++++
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            44589999999999999999999999999999874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.74  E-value=0.066  Score=44.88  Aligned_cols=37  Identities=11%  Similarity=0.096  Sum_probs=32.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..++|.|.| .|.+|..+++.|.++|++|++.+|++.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3456899999 599999999999999999999999874

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.72  E-value=0.054  Score=45.89  Aligned_cols=35  Identities=17%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45689999999999999999999997 899998775

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=94.72  E-value=0.14  Score=44.80  Aligned_cols=85  Identities=12%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHhhcCC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVLNSLP   88 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~~~l~   88 (275)
                      +.+.|.|.|-+|..-|.+|+..|..|++...+|-. ..|.-.|.+++ .++++ ....|+++-++.-..+  .+-+++  
T Consensus       215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea-~~e~difVTtTGc~dii~~~H~~~--  290 (434)
T KOG1370|consen  215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEA-IREVDIFVTTTGCKDIITGEHFDQ--  290 (434)
T ss_pred             cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHh-hhcCCEEEEccCCcchhhHHHHHh--
Confidence            34556799999999999999999999999999843 34444577764 56776 4899999988875432  233333  


Q ss_pred             CCCCCCCcEEEeCCC
Q 023897           89 VHCLQRRTLIADVLS  103 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s  103 (275)
                         ++.++|+.+++-
T Consensus       291 ---mk~d~IvCN~Gh  302 (434)
T KOG1370|consen  291 ---MKNDAIVCNIGH  302 (434)
T ss_pred             ---CcCCcEEecccc
Confidence               667888887663

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=94.70  E-value=0.058  Score=51.56  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ....+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~   43 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP   43 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            445689999999999999999999999999999875

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=94.67  E-value=0.19  Score=44.98  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC-CCeEEEE-cCC--hh-hhHHHHc----Cc-------------------eEe--cChH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ-GHILRAT-SRT--DH-SQLCHRS----GI-------------------SFF--SDKR   61 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~-g~~V~~~-dr~--~~-~~~a~~~----g~-------------------~~~--~~~~   61 (275)
                      +||+|.|+|+||+.+.+.+.+. +.+|... |+.  .+ .....+.    |-                   .+.  .+++
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~   82 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA   82 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence            6999999999999999998765 3566543 422  22 2222221    10                   111  1333


Q ss_pred             HHhccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           62 AFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        62 ~~~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.-.++.|++|.|+......+.....    +..|+..+|+++
T Consensus        83 ~~~w~gvDiVle~tG~~~s~~~a~~h----l~aGak~V~iSa  120 (334)
T PRK08955         83 DTDWSGCDVVIEASGVMKTKALLQAY----LDQGVKRVVVTA  120 (334)
T ss_pred             hCCccCCCEEEEccchhhcHHHHHHH----HHCCCEEEEECC
Confidence            32124788888888876555544443    455666666654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.66  E-value=0.049  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+|.|||+|.-|.++|..|++.|++|+++++.+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            45799999999999999999999999999998753

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.62  E-value=0.086  Score=44.79  Aligned_cols=41  Identities=15%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             CCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            5 SPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         5 ~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .....+.++|.|.| .|.+|..+++.|.+.|++|++++|+++
T Consensus         5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~   46 (256)
T PRK06124          5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA   46 (256)
T ss_pred             cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            34455678899999 599999999999999999999999874

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.62  E-value=0.064  Score=45.91  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            45689999999999999999999996 788888764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=94.62  E-value=0.046  Score=49.46  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||+|.+|.+.|..|++.|++|+++++..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.61  E-value=0.069  Score=47.97  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++..|+|.|.| +|.+|+.+++.|.+.|++|++.+|+..
T Consensus         6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~   45 (353)
T PLN02896          6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA   45 (353)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            467789999999 699999999999999999999888763

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.60  E-value=0.057  Score=44.61  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||+|||+|.+|+.+++.|...|. +++++|.+.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            35789999999999999999999997 699998774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08328 hypothetical protein; Provisional

Probab=94.60  E-value=0.06  Score=45.62  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35689999999999999999999996 799998775

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=94.57  E-value=0.044  Score=49.67  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHCC-CeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQG-HILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~   44 (275)
                      .|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            3899999999999999999999 9999999865

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.55  E-value=0.063  Score=45.79  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            45689999999999999999999996 788988875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.55  E-value=0.084  Score=50.45  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+.|.|.| .|.+|..+++.|.+.|++|++++|+..
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            445688999 599999999999999999999999874

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.54  E-value=0.076  Score=44.81  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=33.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...++|.|+| .|.+|..+++.|.+.|++|++.+|++.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3457899999 599999999999999999999999974

>PRK14031 glutamate dehydrogenase; Provisional

Probab=94.51  E-value=0.29  Score=45.38  Aligned_cols=35  Identities=14%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-Ec
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TS   41 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~d   41 (275)
                      .+.+.++|.|.|.|++|...|+.|.+.|.+|++ .|
T Consensus       224 ~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        224 TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            356788999999999999999999999999887 55

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=94.51  E-value=0.078  Score=47.43  Aligned_cols=24  Identities=29%  Similarity=0.724  Sum_probs=21.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG   34 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g   34 (275)
                      ++||+|.|+|++|+.+.+.|.+.+
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~   24 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESG   24 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcC
Confidence            369999999999999999998753

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.51  E-value=0.071  Score=45.51  Aligned_cols=35  Identities=9%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-----------CeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-----------HILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-----------~~V~~~dr~~   44 (275)
                      ...||.|||+|.+|+.++..|++.|           .+++++|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            5579999999999999999999864           2889998774

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.50  E-value=0.072  Score=47.62  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEec
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      .....+|.|||+|.||...++.|.++|. +|++.+|+.......+...    ..-+. ...+|+||.|+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~----~~~~~-~~~~DvVIs~t  234 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVR----EELSF-QDPYDVIFFGS  234 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhh----hhhhc-ccCCCEEEEcC
Confidence            3466899999999999999999999995 7999999974211100000    00021 25889999873

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.49  E-value=0.16  Score=49.02  Aligned_cols=37  Identities=19%  Similarity=0.405  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..+||+|||.|..|..++...++.|++|.++|.+++
T Consensus        20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4567999999999999999999999999999998874

>PTZ00367 squalene epoxidase; Provisional

Probab=94.47  E-value=0.06  Score=51.76  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||+|..|.++|..|+++|++|.+++|++
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            45689999999999999999999999999999875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.46  E-value=0.078  Score=44.68  Aligned_cols=37  Identities=11%  Similarity=0.051  Sum_probs=32.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++.++|.|.| .|.+|.++++.|.++|++|++.+|++.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~   41 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4457899999 699999999999999999999999863

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.46  E-value=0.063  Score=44.34  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||+|+|+|.+|+.+++.|...|. +++++|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            45789999999999999999999997 799998774

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.45  E-value=0.55  Score=42.12  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~   44 (275)
                      .++||||+|+|+||...++.+.+. +.++.+ .|++.
T Consensus         4 ~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~   40 (338)
T PLN02358          4 KKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI   40 (338)
T ss_pred             CceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence            357999999999999999998765 566665 56543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.43  E-value=0.071  Score=46.19  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|.|+|+|.+|+..|..|++.|. +++++|.+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            45689999999999999999999994 899998774

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.41  E-value=0.056  Score=51.54  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +||+|||+|.-|.+.++.|.+.|++++++++++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            6899999999999999999999999999998875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=94.41  E-value=0.077  Score=45.74  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             EEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHH-HHcCceEecChHHHhcc-CCCEEEEec
Q 023897           14 IGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLC-HRSGISFFSDKRAFLEA-DNDVILIST   75 (275)
Q Consensus        14 I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a-~~~g~~~~~~~~~~~~~-~aD~iilav   75 (275)
                      |.|-| +|.||++|...|.+.||+|++..|++..... ....+...+.+++. .. .+|+||--.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~-~~~~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADA-LTLGIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhc-ccCCCCEEEECC
Confidence            34556 8999999999999999999999999853221 11222222334442 23 588887543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.33  E-value=0.074  Score=47.78  Aligned_cols=36  Identities=14%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++||.|.| +|.+|+.+++.|.+.|++|+++||..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4568999999 69999999999999999999999854

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=94.31  E-value=0.062  Score=48.42  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.31  E-value=0.12  Score=44.12  Aligned_cols=64  Identities=22%  Similarity=0.315  Sum_probs=48.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------ecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------FSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp   76 (275)
                      |+|.|.| +|.+|+.+...|.+.|++|.+..|+++.......++..       ..++..+ +.+.|.++++.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a-~~G~~~~~~i~~   72 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAG-AKGVDGVLLISG   72 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHH-hccccEEEEEec
Confidence            5899999 79999999999999999999999998643222245432       1233443 478899888888

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=94.31  E-value=0.23  Score=40.42  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEE-cCChhhhHHHHcCceEecChHHHh--ccCCCEEEEecCchhH-HHHhhcC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRAT-SRTDHSQLCHRSGISFFSDKRAFL--EADNDVILISTSILSL-SEVLNSL   87 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~-dr~~~~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~~~-~~v~~~l   87 (275)
                      ++.|+|+|..|..++..|.+.|+++.++ |.++......-.|..+....+++.  ..+.+.++++++.... .++++.+
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l   79 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL   79 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence            4789999999999999999999998875 544432211224555544444321  2345789999875433 3444443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.29  E-value=0.16  Score=47.32  Aligned_cols=62  Identities=11%  Similarity=0.191  Sum_probs=44.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh--hHHHHcCceEe-c--ChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS--QLCHRSGISFF-S--DKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~--~~a~~~g~~~~-~--~~~~~~~~~aD~iilav   75 (275)
                      ++|.|||.|..|.+.++.|.+.  |++|+++|.++..  ....+.|+.+. .  +.+.  +.++|+||++.
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~--~~~~d~vV~Sp   76 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEW--LLEADLVVTNP   76 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHH--hccCCEEEECC
Confidence            6799999999999999999987  5899999976521  11123377652 2  3333  37899888874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.28  E-value=0.12  Score=44.00  Aligned_cols=45  Identities=18%  Similarity=0.045  Sum_probs=37.8

Q ss_pred             CCcCCCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            1 MAVSSPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         1 ~~~~~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ||.+-+..+..++|.|+| .|.+|..+++.|.+.|++|++.+|+..
T Consensus         1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~   46 (255)
T PRK06113          1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_pred             CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            666645555678899999 699999999999999999999998764

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.27  E-value=0.082  Score=47.40  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.++|.|.| +|.+|+.+++.|.+.|++|++.+|++.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            457899999 599999999999999999999998763

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=94.21  E-value=0.075  Score=47.60  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEEEcCChh
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~~dr~~~   45 (275)
                      +|+|.|.|+ |.+|+.+++.|.+. |++|++.+|+..
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~   37 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD   37 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH
Confidence            478999995 99999999999886 699999998753

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.20  E-value=0.084  Score=48.35  Aligned_cols=37  Identities=19%  Similarity=0.503  Sum_probs=33.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+++|.|+| .|.+|+.+++.|.+.|++|++.+|++.
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            4567999999 599999999999999999999999863

>PRK12939 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.11  Score=43.67  Aligned_cols=38  Identities=11%  Similarity=0.137  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+..++|.|.| .|.+|..+++.|.+.|++|++.+|+++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            34567899999 599999999999999999999998874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.14  E-value=0.1  Score=47.04  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .....++|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus        14 ~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   51 (352)
T PRK12770         14 PPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP   51 (352)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34456799999999999999999999999999999864

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.11  Score=43.60  Aligned_cols=36  Identities=25%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++++.|.| .|.+|..+++.|.++|++|++.+|++.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~   41 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQD   41 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346789999 599999999999999999999999874

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=94.08  E-value=0.079  Score=48.11  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +.+|.|+|+|..|.+-|.+|.+.|++|.+|+..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            4689999999999999999999999999998754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=94.08  E-value=0.087  Score=45.36  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|+|||+|.-|.+-|..|+.+|++|+++++..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            469999999999999999999999999999874

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=94.08  E-value=0.097  Score=45.30  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=28.8

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      ||.|+| .|.+|+.+++.|.+.|++|++.+|+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~   32 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS   32 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence            588999 5999999999999999999999886

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.07  E-value=0.32  Score=43.21  Aligned_cols=44  Identities=16%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hhHHHHcCc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~~a~~~g~   54 (275)
                      ..+|.|+|+|.+|...+..++..|.+ |++.+++++ .+.+.+.|+
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga  209 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA  209 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            56899999999999999999999987 999988874 456666665

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.069  Score=49.78  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |||+|+|+|.-|.+-|..|+++||+|++|.+.+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~   34 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR   34 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence            6899999999999999999999999999987764

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.11  Score=43.60  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..++|.|.| .|.+|..+++.|.+.|++|++.+|++.
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~   41 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK   41 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence            4457899999 599999999999999999999999974

>PRK08017 oxidoreductase; Provisional

Probab=94.05  E-value=0.18  Score=42.73  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++|.|.|+ |.+|.++++.|.+.|++|++.+|+++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~   37 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD   37 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47999996 99999999999999999999999874

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.04  E-value=0.32  Score=43.49  Aligned_cols=65  Identities=15%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChh-hhHHHHcCceEec-ChHHHhccCCCEEEEecCc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDH-SQLCHRSGISFFS-DKRAFLEADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~-~~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~   77 (275)
                      ..+|.|+|+|.+|...+..+++ .| .+|++.+++++ .+.+++.+..... +..+.  ...|+||=++..
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~--~g~d~viD~~G~  232 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPED--LAVDHAFECVGG  232 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhc--cCCcEEEECCCC
Confidence            4689999999999998887775 44 68999999874 4555554543211 11111  146888888873

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02028 ChlP geranylgeranyl reductase

Probab=94.03  E-value=0.076  Score=48.75  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++|.|||+|.-|.+.|..|+++|++|.++++.+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999999999999999999999999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=94.02  E-value=0.26  Score=44.02  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC---CCeEEEEc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ---GHILRATS   41 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~---g~~V~~~d   41 (275)
                      |+||||=|.|+||+.+.+.+.+.   ..+|...+
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvain   34 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAIN   34 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEec
Confidence            46999999999999999987654   35666554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.02  E-value=0.36  Score=45.38  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcC----------ChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHHc----------------------Cce
Q 023897            9 SSTLKIGIIGF----------GPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHRS----------------------GIS   55 (275)
Q Consensus         9 ~~~~~I~IIG~----------G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~~----------------------g~~   55 (275)
                      ....||+|+|+          ..-...++..|.+.|.+|.+||+--... .....                      +++
T Consensus       322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (473)
T PLN02353        322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVS  401 (473)
T ss_pred             cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccccccccccccccccccee
Confidence            45679999996          3367789999999999999999863221 11011                      234


Q ss_pred             EecChHHHhccCCCEEEEecCchhHHHH-hhcC-CCCCCCCCcEEEeCCCCCh
Q 023897           56 FFSDKRAFLEADNDVILISTSILSLSEV-LNSL-PVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        56 ~~~~~~~~~~~~aD~iilavp~~~~~~v-~~~l-~~~~l~~~~iv~d~~s~k~  106 (275)
                      ...+..++ ++++|+|+++++-..+.++ ++.+ ..  +....+|+|..++-.
T Consensus       402 ~~~~~~~a-~~~aD~vvi~t~~~ef~~l~~~~~~~~--m~~~~~viD~rn~l~  451 (473)
T PLN02353        402 VVWDAYEA-TKGAHGICILTEWDEFKTLDYQKIYDN--MQKPAFVFDGRNVLD  451 (473)
T ss_pred             eeCCHHHH-hcCCCEEEECCCChHhcccCHHHHHHh--ccCCCEEEECCCCCC
Confidence            45565665 4899999999998876543 2232 22  344457899876643

>PRK08244 hypothetical protein; Provisional

Probab=94.00  E-value=0.079  Score=50.01  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||+|..|.++|..|++.|++|.++++.+
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~   35 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK   35 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            579999999999999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	2e-25
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	2e-10
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	3e-10
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	3e-10
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	1e-09
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	1e-08
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	2e-07
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	5e-07
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	5e-07
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	1e-06
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	9e-05
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	3e-04
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	6e-04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	9e-04

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Length = 298

 Score =  101 bits (253), Expect = 2e-25
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 29/253 (11%)

Query: 16  IIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILIST 75
           + G+G  G   A+ +   G+ +    R D +             +     AD  V+++S 
Sbjct: 27  VGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANAD--VVIVSV 73

Query: 76  SILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPE-SG 134
            I    E +  L  + L    L+AD+ SVK  P   +L+V      VL  HPMFG + + 
Sbjct: 74  PINLTLETIERLKPY-LTENMLLADLTSVKREPLAKMLEVHTGA--VLGLHPMFGADIAS 130

Query: 135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH---- 190
                    V  +   R        L   +  G K+ + +  EHD      Q L H    
Sbjct: 131 MAKQ-----VVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTF 185

Query: 191 TIGRVLSELEI---QSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLE 247
             G  LS+  I      ++++  +   + +         +L++ + +        +  L+
Sbjct: 186 ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAELYADIIMDKSENLAVIETLK 245

Query: 248 AAFEKVKHKLQQK 260
             +++     +  
Sbjct: 246 QTYDEALTFFENN 258

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 Length = 281

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHSQLCHRSGI--SFFSDKRAFLEAD 67
            + I+G G  G   AK++ + G    I       +        GI     +      +  
Sbjct: 3   NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62

Query: 68  NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
            D +++S+ + +  E+   L  + L     + D  SVK      L  +L +    +  HP
Sbjct: 63  PDFVMLSSPVRTFREIAKKL-SYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHP 119

Query: 128 M-----FGPESGQNGWKDFAFVYEK---VRIRDEATCSSFL----RIFESEGCKMLEMSC 175
           +      G E           +YE    +    + T    L    R++E  G  +  MS 
Sbjct: 120 IAGTEKSGVEYS------LDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 173

Query: 176 EEHDKVAA 183
           E HD V  
Sbjct: 174 ELHDYVFG 181

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Length = 314

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHSQLCHRSGI--SFFSDKRAFLEAD 67
            + I+G G  G   AK++ + G    I       +        GI     +      +  
Sbjct: 35  NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 94

Query: 68  NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
            D +++S+ + +  E+   L  + L     + D  SVK      L  +L +    +  HP
Sbjct: 95  PDFVMLSSPVRTFREIAKKL-SYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHP 151

Query: 128 M-----FGPESGQNGWKDFAFVYEKVR---IRDEATCSSFL----RIFESEGCKMLEMSC 175
           +      G E           +YE  +      + T    L    R++E  G  +  MS 
Sbjct: 152 IAGTEKSGVEYS------LDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 205

Query: 176 EEHDKVAA 183
           E HD V  
Sbjct: 206 ELHDYVFG 213

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 58.6 bits (141), Expect = 3e-10
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 21/229 (9%)

Query: 8   SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDHS--QLCHRSGISFFSDKRAFL 64
           S     I +IG G     LAK + ++G  +    SRT+ S  +L  +    + +D  A +
Sbjct: 7   SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTD-LAEV 65

Query: 65  EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC 124
                + ++S    + +E+L  +     +   ++    S    P NV    +P       
Sbjct: 66  NPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGS---IPMNVWEGHVP---HYGV 119

Query: 125 THPMFGPESGQN-GWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEE----HD 179
            +PM      +   +K+  F  E     D A   +      +   ++ +   E+    H 
Sbjct: 120 FYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAI---ASTLSNRVYDADSEQRKSLHL 176

Query: 180 KVAAKSQFLTHTIG---RVLSELEIQSTSMNTKGFETLIRLKESSVNDS 225
                  F  H       +L +  +    M     ET  ++ E     +
Sbjct: 177 AAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTA 225

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 27/187 (14%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRT-DHSQLCHRSGI--SFFSDKRAFLEADN 68
           +KIG++G G  G  LA  + ++GH L   SR     +      +      D      A  
Sbjct: 1   MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAK- 59

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
            +I + T I  +   L  L +  L    ++ DV SVK        Q+       +  HPM
Sbjct: 60  -IIFLCTPIQLILPTLEKL-IPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPM 114

Query: 129 -----FGPESGQNGWKDFAFVYEKVRI-------RDEATCSSFLRIFESEGCKMLEMSCE 176
                 G +           ++             D    +    + E  G K+   +  
Sbjct: 115 AGTAAQGIDGA------EENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPA 168

Query: 177 EHDKVAA 183
           +HD+  A
Sbjct: 169 DHDQAVA 175

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHSQLCHRSG-ISFFSDKRAFLEADN 68
            I I G G  G  LA  + +      I+          +    G +   +       A  
Sbjct: 8   TIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALA 67

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHP 127
           DVI+++  I    + +  L    L+   +I D  S K          L +  +  + +HP
Sbjct: 68  DVIILAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHP 127

Query: 128 M-----FGPESGQNGWKDFAFVYE-------KVRIRDEATCSSFLRIFESEGCKMLEMSC 175
           M      G  +          ++E          +    T  +   +      + +E+  
Sbjct: 128 MAGSHKSGAVAA------NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181

Query: 176 EEHDKVAA 183
            EHD V +
Sbjct: 182 AEHDCVTS 189

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 13  KIGIIG-FGPFGQFLAKTMIKQGHILRATSRT-DHSQLCHRSGISFFSDKRAFLEADNDV 70
            + I+G  G  G  + + +    H L A     +        GI          EAD  V
Sbjct: 13  TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEAD--V 70

Query: 71  ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL------C 124
           ++++     + +V   + V  ++  T++  + +           V+PE  D+       C
Sbjct: 71  VVLALPDNIIEKVAEDI-VPRVRPGTIVLILDAAA-----PYAGVMPERADITYFIGHPC 124

Query: 125 THPMFGPESGQNGWKDF 141
             P+F  E+      D+
Sbjct: 125 HPPLFNDETDPAARTDY 141

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQGHILRATSRT-DHSQLCHRSGISFFSDKRAFLE---ADN 68
            + I+G G  G  L + +    H +   +R+   ++     G    +D  A L+   A++
Sbjct: 10  PVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAED 69

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC--TH 126
            +I+++  + ++  +L+++  H         DV+SVK     V   V    M      +H
Sbjct: 70  ALIVLAVPMTAIDSLLDAVHTH--APNNGFTDVVSVKT---AVYDAVKARNMQHRYVGSH 124

Query: 127 PMFGPESGQNGWK----------------DFAFVYEKVRIRDEATCSSFLRIFESEGCKM 170
           PM G     +GW                 D  F    +     +     +++  + G ++
Sbjct: 125 PMAGTA--NSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEV 182

Query: 171 LEMSCEEHDKVAA 183
           +      HD  AA
Sbjct: 183 VPSRVGPHDAAAA 195

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 28/212 (13%), Positives = 52/212 (24%), Gaps = 20/212 (9%)

Query: 11  TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADN 68
           +L +  +G G   +F  + +  +  I    SR+      L    G    + ++       
Sbjct: 2   SLVLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELN-- 59

Query: 69  DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
            V+ +      +  V N      L    L+            +  +     +        
Sbjct: 60  GVVFVIVPDRYIKTVANH---LNLGDAVLVHCSGF---LSSEIFKKSGRASIHPN--FSF 111

Query: 129 FGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEE----HDKVAAK 184
              E          F  E     DE       +I E    K   +  E+    H      
Sbjct: 112 SSLEKALEMKDQIVFGLEG----DERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIA 167

Query: 185 SQFLTHTIGRVLSELEIQSTSMNTKGFETLIR 216
           S F             +           TL++
Sbjct: 168 SNFPVALAYLSKRIYTLLGLDEPELLIHTLMK 199

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 1  MAVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43
            ++  SS     + I G G FG+ L   M++ G+ +   SR 
Sbjct: 9  FPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 2  AVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43
          +  +       K+GI+G G F + LA  ++  G  +   SR 
Sbjct: 19 SSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRN 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 53/376 (14%), Positives = 109/376 (28%), Gaps = 158/376 (42%)

Query: 15  GIIGFG------------------PFGQFLAKTMIKQGHILRATSRTDHSQ-LCHRSGIS 55
           G++G G                   F  F     +   +     +  +  Q L ++   +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 56  FFS------------------DKRAFLEADNDVILISTSIL---SLSEVLNSLPVHCLQR 94
           + S                   +R       +  L+   +L     ++  N+  + C   
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSC--- 266

Query: 95  RTLI-------ADVLSVKEYPR----------------NVLLQV-------LPEEMDVLC 124
           + L+        D LS                      ++LL+        LP E+  L 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LT 324

Query: 125 THP----MFGPESGQNG---WKDFAFV-YEKVRIRDEATCSSF-----------LRIF-- 163
           T+P    +   ES ++G   W ++  V  +K+    E++ +             L +F  
Sbjct: 325 TNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 164 --------------ESEGCKMLEMSCEEHDKVAAKSQF--LTHTIGRVLSELEIQSTSMN 207
                         +     ++ +  + H     + Q    T +I  +  EL+++  +  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 208 T------------KGF--ETLIR--------------LKESSVNDSFDLFSGLYIHNRFA 239
                        K F  + LI               LK     +   LF  +++  RF 
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 240 KQELLDLEAAFEKVKH 255
           +Q          K++H
Sbjct: 504 EQ----------KIRH 509

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 7  SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT-DHSQLCHRSGIS--FFSDKRAF 63
          S++ T  +   G G   + L++ +  QG  +  TSR  D  +    SG     +  +   
Sbjct: 1  SNAMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS 60

Query: 64 LEADNDVILIST 75
          L      +LIST
Sbjct: 61 L-DGVTHLLIST 71

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 6  PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45
                ++I I G G  GQ +       GH +      D 
Sbjct: 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Length = 438

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 23/92 (25%)

Query: 2  AVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQL---CHRS------ 52
          +VS+  +++ +++G +G      +  KT     H       +   Q+             
Sbjct: 11 SVSTVPNAAPIRVGFVGLNAAKGWAIKT-----HYPAILQLSSQFQITALYSPKIETSIA 65

Query: 53 --------GISFFSDKRAFLEADN-DVILIST 75
                    + F    +F  +   D+I+I+ 
Sbjct: 66 TIQRLKLSNATAFPTLESFASSSTIDMIVIAI 97

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 38.9 bits (90), Expect = 9e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 8  SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43
              +KI ++G G  G+ +A  +   GH +   +R 
Sbjct: 16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	100.0
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	100.0
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	100.0
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	100.0
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	100.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	100.0
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.97
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.95
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.95
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.95
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.94
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.93
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.92
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.91
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.91
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.87
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.86
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.86
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.85
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.85
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.84
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.84
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.84
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.84
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.83
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.83
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.82
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.82
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.82
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.81
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.8
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.8
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.8
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.77
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.77
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.76
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.76
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.75
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.75
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.74
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.74
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.74
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.74
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.73
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.73
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.73
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.72
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.72
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.72
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.71
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.7
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.7
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.7
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.7
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.7
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.7
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.69
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.68
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.68
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.67
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.67
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.67
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.66
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.65
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.64
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.64
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.63
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.63
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.62
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.62
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.61
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.6
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.6
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.6
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.6
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.37
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.58
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.58
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.58
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.57
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.56
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.53
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.51
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.48
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.48
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.41
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.37
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.36
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.33
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.33
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.33
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.32
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.31
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.3
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.3
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.29
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.29
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.29
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.28
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.27
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.26
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.25
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.23
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.23
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.23
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.22
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.21
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.21
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.18
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.17
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.17
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.14
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.1
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.1
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.09
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.08
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.08
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.05
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.01
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.97
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.92
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.92
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.89
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.88
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.86
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.85
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.85
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.84
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.84
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.83
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.82
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.82
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.8
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.79
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.79
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.77
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.76
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.76
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	98.75
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.7
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.67
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.67
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.66
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.66
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.64
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.63
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.62
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.62
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.61
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.6
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.6
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.59
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.58
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.57
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.57
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.57
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.56
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.56
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.56
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.55
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.55
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.54
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.54
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.53
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.52
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.5
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.49
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.49
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.48
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.48
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.47
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.47
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.47
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.47
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.44
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.44
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.42
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.42
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.42
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.42
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.42
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.41
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.41
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.41
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.4
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.39
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.38
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.38
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.38
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.37
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.36
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.36
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.36
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.35
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.34
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.34
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.33
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.32
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.31
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.31
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.3
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.3
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.28
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.28
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.28
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.26
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.26
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.25
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.24
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.24
4had_A	350	Probable oxidoreductase protein; structural genomi	98.24
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.23
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.23
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.21
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.21
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.19
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.19
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.19
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.18
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.17
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.16
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.16
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.16
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.16
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.15
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.14
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.14
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.13
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.12
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.12
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.12
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.09
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.09
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.04
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.04
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.04
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.04
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.03
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.01
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.01
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.01
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.0
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.0
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.98
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.98
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.96
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.96
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.94
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.94
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.93
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.92
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.9
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.9
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.89
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.88
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.87
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.87
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.87
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.84
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.83
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.82
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.8
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.77
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.75
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.73
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.72
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.71
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.71
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.7
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.69
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.68
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.68
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.68
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.68
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.67
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.67
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.67
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.66
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.66
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.65
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.65
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.64
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.64
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.63
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.6
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.59
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.59
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.58
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.58
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.57
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.55
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.54
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.54
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.53
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.52
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.48
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.48
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.46
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.43
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.41
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.41
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.37
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.36
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.32
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.3
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.3
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.29
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.28
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.25
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.24
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.23
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.22
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.2
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.17
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.17
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.15
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.14
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.11
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.1
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.08
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.07
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.04
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.04
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.04
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.03
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.02
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.02
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	97.0
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.99
1lnq_A	336	MTHK channels, potassium channel related protein;	96.99
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.95
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.91
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.9
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.88
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.87
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.84
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.8
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.76
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.74
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.73
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.7
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.69
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.67
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.64
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.63
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.62
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.59
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	96.59
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.58
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.56
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.56
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	96.53
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.52
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.51
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.5
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.48
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.47
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.46
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.41
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.4
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.4
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.38
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.36
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.33
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	96.32
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.32
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.27
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.26
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.25
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.23
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.22
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.2
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.18
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.17
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.17
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.16
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.15
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.11
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.1
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.09
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	96.09
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.07
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.04
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.01
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.99
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.98
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.98
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.97
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.92
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.9
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.87
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.86
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.86
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.86
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.83
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.83
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.82
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.79
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.78
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.76
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.74
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.74
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.74
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.73
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.73
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.73
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	95.73
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.72
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.68
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.68
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.68
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	95.67
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.66
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.65
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.65
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.63
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.62
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.62
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	95.61
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.59
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	95.58
3dme_A	369	Conserved exported protein; structural genomics, P	95.58
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.57
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.55
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.53
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.52
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	95.51
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.48
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.48
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.46
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.46
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.44
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.42
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.41
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.41
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.4
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.4
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.39
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.38
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	95.38
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	95.37
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.37
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.36
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.36
2csu_A	457	457AA long hypothetical protein; structural genomi	95.34
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.33
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.33
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.32
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.31
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.29
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.25
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.25
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.23
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.22
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.21
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.21
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.19
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.18
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.17
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.17
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.14
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.13
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.13
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.11
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	95.11
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.11
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.11
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.1
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.08
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.05
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.05
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.04
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.03
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.02
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.02
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.01
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.01
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	95.0

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=100.00  E-value=3.4e-46  Score=329.09  Aligned_cols=251  Identities=20%  Similarity=0.254  Sum_probs=219.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCc--eEecChHH-HhccCCCEEEEecCchhHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGI--SFFSDKRA-FLEADNDVILISTSILSLSE   82 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~--~~~~~~~~-~~~~~aD~iilavp~~~~~~   82 (275)
                      +..|||+|||+|.||+++|..|++.|+  +|++|||+++ .+.+.+.|+  ..++++++ + ++++|+||+|||++.+.+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~-~~~aDvVilavp~~~~~~  109 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVE-DFSPDFVMLSSPVRTFRE  109 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGG-GGCCSEEEECSCGGGHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHh-hccCCEEEEeCCHHHHHH
Confidence            345799999999999999999999999  9999999985 566777787  56677777 5 489999999999999999


Q ss_pred             HhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHH
Q 023897           83 VLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEAT  155 (275)
Q Consensus        83 v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~  155 (275)
                      +++++ +.  ++++++|+|++|+|..+.+.+.+.++.  +|+++|||+|++.++      +.|.|..+++++....+++.
T Consensus       110 vl~~l~~~--l~~~~iv~d~~Svk~~~~~~~~~~l~~--~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~  185 (314)
T 3ggo_A          110 IAKKLSYI--LSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKR  185 (314)
T ss_dssp             HHHHHHHH--SCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHH
T ss_pred             HHHHHhhc--cCCCcEEEECCCCcHHHHHHHHHhcCC--CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHH
Confidence            99999 77  899999999999998888888877653  899999999988643      23567788888776668889


Q ss_pred             HHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cc---ccCcccCcchHHHHHHhhcCCCCChhh
Q 023897          156 CSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EI---QSTSMNTKGFETLIRLKESSVNDSFDL  228 (275)
Q Consensus       156 ~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~---~~~~l~~~~~~~~~rl~~~~~~~~p~~  228 (275)
                      +++++++|+.+|++++++++++||+++|++||+||+++++|++.    +.   ....|++++|||++||+.++    |+|
T Consensus       186 ~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~frd~tRia~~~----p~~  261 (314)
T 3ggo_A          186 LKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSD----PIM  261 (314)
T ss_dssp             HHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTTTHHHHTTSC----HHH
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHHHHHHHhcCC----HHH
Confidence            99999999999999999999999999999999999999988763    22   12569999999999999876    999


Q ss_pred             HHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          229 FSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       229 ~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |.+|+..|++++ +.|++|+++|+++++.|+++|.+.|.++
T Consensus       262 w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~  302 (314)
T 3ggo_A          262 WRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEY  302 (314)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999985 9999999999999999999999887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=1.2e-46  Score=334.22  Aligned_cols=248  Identities=17%  Similarity=0.228  Sum_probs=215.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhcc----CCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEA----DNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~----~aD~iilavp~~~~~~v   83 (275)
                      +..+||+|||+|+||++||+.|++.|++|++|||+++ .+.+.+.|+..+.++++++ +    ++|+||+|||++.+.++
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~-~~a~~~aDlVilavP~~~~~~v   84 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATL-QRAAAEDALIVLAVPMTAIDSL   84 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHH-HHHHHTTCEEEECSCHHHHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHH-HhcccCCCEEEEeCCHHHHHHH
Confidence            4557999999999999999999999999999999985 5667788988778887753 4    47999999999999999


Q ss_pred             hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChH--
Q 023897           84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEA--  154 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~--  154 (275)
                      ++++ +   ++++++|+|++|+|..+.+.+.+.++ +.+|+++|||+|++.++      +.|.|.++++++....+++  
T Consensus        85 l~~l~~---~~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~  160 (341)
T 3ktd_A           85 LDAVHT---HAPNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI  160 (341)
T ss_dssp             HHHHHH---HCTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred             HHHHHc---cCCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence            9988 5   46889999999999988888888765 57899999999998432      3467888999987665666  


Q ss_pred             ------HHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccc----cCcccCcchHHHHHHhhcCCCC
Q 023897          155 ------TCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQ----STSMNTKGFETLIRLKESSVND  224 (275)
Q Consensus       155 ------~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~----~~~l~~~~~~~~~rl~~~~~~~  224 (275)
                            .+++++++|+.+|++++++++++||+++|++||+||+++++|++...+    ...|+++||||++||+.++   
T Consensus       161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~gfrd~tRia~s~---  237 (341)
T 3ktd_A          161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAGSYRDSTRVAGTD---  237 (341)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTGGGGSC---
T ss_pred             ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccccHHHHHHHhcCC---
Confidence                  789999999999999999999999999999999999999999875322    2458999999999999876   


Q ss_pred             ChhhHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897          225 SFDLFSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       225 ~p~~~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                       |+||.+|+..|++++ +.|++|+++|+++++.|+++| +.|.
T Consensus       238 -p~lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d-~~l~  278 (341)
T 3ktd_A          238 -PGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIE  278 (341)
T ss_dssp             -HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCH
T ss_pred             -HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHccc-HHHH
Confidence             999999999999886 999999999999999999988 6543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=1.3e-37  Score=272.70  Aligned_cols=233  Identities=22%  Similarity=0.286  Sum_probs=197.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      .++||+||| +|+||+++|..|++.|++|++|||++..            ++.++ +.++|+||+|||++.+.+++.++ 
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------~~~~~-~~~aDvVilavp~~~~~~vl~~l~   86 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------VAESI-LANADVVIVSVPINLTLETIERLK   86 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------GHHHH-HTTCSEEEECSCGGGHHHHHHHHG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------CHHHH-hcCCCEEEEeCCHHHHHHHHHHHH
Confidence            346899999 9999999999999999999999998642            34454 48999999999999999999999 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG  167 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G  167 (275)
                      +.  ++++++|+|++|+|..+.+.+.+.++  .++++.|||+|++.  +.+.+.++++++..  +++..+.++++|+.+|
T Consensus        87 ~~--l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~g~~~--~~~~g~~~~l~~~~--~~~~~~~v~~l~~~~G  158 (298)
T 2pv7_A           87 PY--LTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMFGADI--ASMAKQVVVRCDGR--FPERYEWLLEQIQIWG  158 (298)
T ss_dssp             GG--CCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECSCTTC--SCCTTCEEEEEEEE--CGGGTHHHHHHHHHTT
T ss_pred             hh--cCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCCCCCc--hhhcCCeEEEecCC--CHHHHHHHHHHHHHcC
Confidence            77  88999999999999887777777654  68999999999986  34567778887654  6778899999999999


Q ss_pred             CeEEEcChhHHHHHHHHhhhhHHHHHHHHhh----ccccc---CcccCcchHH----HHHHhhcCCCCChhhHHHHHHHC
Q 023897          168 CKMLEMSCEEHDKVAAKSQFLTHTIGRVLSE----LEIQS---TSMNTKGFET----LIRLKESSVNDSFDLFSGLYIHN  236 (275)
Q Consensus       168 ~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~----~~~~~---~~l~~~~~~~----~~rl~~~~~~~~p~~~~~i~~~N  236 (275)
                      ++++++++++||.+++++||+||++++++++    .|.+.   ..+++++|++    ++|++.+    +|++|.+++..|
T Consensus       159 ~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria~~----~p~~~~di~~sn  234 (298)
T 2pv7_A          159 AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQ----DAELYADIIMDK  234 (298)
T ss_dssp             CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTS----CHHHHHHHHC--
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHhcC----CHHHHHHHHHHC
Confidence            9999999999999999999999998776664    34432   4689999999    8998855    499999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          237 RFAKQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       237 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +.+...|++|++.|+++++.|+++|.+.|.+
T Consensus       235 ~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~  265 (298)
T 2pv7_A          235 SENLAVIETLKQTYDEALTFFENNDRQGFID  265 (298)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9886699999999999999999999888755

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=1.3e-36  Score=263.98  Aligned_cols=248  Identities=20%  Similarity=0.270  Sum_probs=206.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCce--EecChHHHhcc-CCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGIS--FFSDKRAFLEA-DNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~~--~~~~~~~~~~~-~aD~iilavp~~~~~~v~   84 (275)
                      ++||+|||+|.||++++..|.+.|+  +|++|||+++ .+.+.+.|+.  .+++++++ +. ++|+||+|||++.+.+++
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~aDvVilavp~~~~~~v~   79 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKV-EDFSPDFVMLSSPVRTFREIA   79 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-GGTCCSEEEECSCHHHHHHHH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHH-hcCCCCEEEEcCCHHHHHHHH
Confidence            3689999999999999999999998  9999999985 4555667764  45677775 58 999999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHH
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      .++ +.  ++++++++|+++++....+.+.+.++.  .+++.||++|++..+      +.+.+.++++++..+.+++..+
T Consensus        80 ~~l~~~--l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~  155 (281)
T 2g5c_A           80 KKLSYI--LSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK  155 (281)
T ss_dssp             HHHHHH--SCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHH
T ss_pred             HHHHhh--CCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHH
Confidence            988 76  788999999999988777777776653  389999999876432      2246777888876556788899


Q ss_pred             HHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhh----cccc---cCcccCcchHHHHHHhhcCCCCChhhHH
Q 023897          158 SFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSE----LEIQ---STSMNTKGFETLIRLKESSVNDSFDLFS  230 (275)
Q Consensus       158 ~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~----~~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~  230 (275)
                      .++++|+.+|++++++++++||.++++++|+||+++.++.+    .+.+   ...+++++|++++|++..    +|++|.
T Consensus       156 ~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~----~p~~~~  231 (281)
T 2g5c_A          156 LVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKS----DPIMWR  231 (281)
T ss_dssp             HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGGGC---CCS----CHHHHH
T ss_pred             HHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccccHHHHhHHhcC----CHHHHH
Confidence            99999999999999999999999999999999998776665    2333   256899999999999874    599999


Q ss_pred             HHHHHCHHH-HHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          231 GLYIHNRFA-KQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       231 ~i~~~N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +++..|+.+ ++.++.|+++|+.+++.|+++|.+.|.+
T Consensus       232 ~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~  269 (281)
T 2g5c_A          232 DIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVE  269 (281)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999976 4999999999999999999999988765

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=100.00  E-value=2.2e-36  Score=263.81  Aligned_cols=253  Identities=19%  Similarity=0.306  Sum_probs=205.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      |.+|||+|||+|.||+++|..|.+.  |++|++|||+++ .+.+.+.|.  ..+.+++++ +.++|+||+|||++.+.++
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~~aDvVilavp~~~~~~v   82 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVF-AALADVIILAVPIKKTIDF   82 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTT-GGGCSEEEECSCHHHHHHH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHh-hcCCCEEEEcCCHHHHHHH
Confidence            3468999999999999999999988  579999999985 445555676  456677765 4899999999999999999


Q ss_pred             hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCCCCCCc------CCccccceeeeeeecCChHH
Q 023897           84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEAT  155 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~  155 (275)
                      +.++ +.. ++++++++|+++++..+.+.+.+.++. +.+|++.||++|++..+      +.+.+.++++++..+.+++.
T Consensus        83 ~~~l~~~~-l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~  161 (290)
T 3b1f_A           83 IKILADLD-LKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNT  161 (290)
T ss_dssp             HHHHHTSC-CCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTH
T ss_pred             HHHHHhcC-CCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHH
Confidence            9888 420 467899999999887666777777664 67899999998765422      23456667777665557778


Q ss_pred             HHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHHHHHHhhcCCCCChhh
Q 023897          156 CSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFETLIRLKESSVNDSFDL  228 (275)
Q Consensus       156 ~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~  228 (275)
                      .+.++++|+.+|.+++++++++||.+++.+||+||+++.++.+.    |.+.   ..+++++|++++|++..    +|.+
T Consensus       162 ~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~~~~~~~rla~~----~p~~  237 (290)
T 3b1f_A          162 IPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAGGFRDMTRIAES----EPGM  237 (290)
T ss_dssp             HHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCHHHHHTTGGGGS----CHHH
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccccHHhhhhhhcC----CHHH
Confidence            99999999999999999999999999999999999988776652    3322   46899999999999965    4999


Q ss_pred             HHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          229 FSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       229 ~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      |.+++..|+... +.++.|.+.|+++++.|+++|.+.|.+
T Consensus       238 ~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~  277 (290)
T 3b1f_A          238 WTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWA  277 (290)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999875 999999999999999999999888765

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=2.3e-34  Score=249.56  Aligned_cols=245  Identities=21%  Similarity=0.285  Sum_probs=205.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+|||+|.||++++..|.+.|++|++|||+++ .+...+.|+  ..++++++ + .++|+||+|||++.+.++++++ 
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-~~~D~vi~av~~~~~~~~~~~l~   78 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSL-L-QTAKIIFLCTPIQLILPTLEKLI   78 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGG-G-TTCSEEEECSCHHHHHHHHHHHG
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHH-h-CCCCEEEEECCHHHHHHHHHHHH
Confidence            6899999999999999999999999999999985 444556676  35667777 4 7899999999999999999998 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      +.  ++++++++|+++++....+.+.+.++   ++++.||++|+...+      +.+.+.++++++....+++..+.+++
T Consensus        79 ~~--~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~  153 (279)
T 2f1k_A           79 PH--LSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRS  153 (279)
T ss_dssp             GG--SCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHH
T ss_pred             hh--CCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHH
Confidence            76  88899999999998877777776653   789999999776432      23456677777654447788899999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----ccc-----cCcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ-----STSMNTKGFETLIRLKESSVNDSFDLFSGL  232 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~-----~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i  232 (275)
                      +|+.+|++++++++.+||.++++++++||+++.++.+.    +.+     ...+++++|++++|++..    +|++|.++
T Consensus       154 l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~----~p~~~~~~  229 (279)
T 2f1k_A          154 VLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVGGG----NPELGTMM  229 (279)
T ss_dssp             HHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGGS----CHHHHHHH
T ss_pred             HHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhcccCC----CHHHHHHH
Confidence            99999999999999999999999999999999888763    322     145899999999999965    49999999


Q ss_pred             HHHCHHH-HHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          233 YIHNRFA-KQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       233 ~~~N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +..|+.+ ++.++.|++.|+.+++.+.++|.+++.+
T Consensus       230 ~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~  265 (279)
T 2f1k_A          230 ATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHR  265 (279)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            9999987 4999999999999999999888776543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.97  E-value=4e-30  Score=228.81  Aligned_cols=235  Identities=14%  Similarity=0.165  Sum_probs=188.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~   86 (275)
                      ..|+|+|||+|.||+++|..|++.|++|++++|++.  .+.+.+.|+... +++++ ++++|+||+|||++...+++. +
T Consensus        15 ~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~-~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTA-VAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHH-HHTCSEEEECSCHHHHHHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHH-HhcCCEEEEeCCcHHHHHHHHHH
Confidence            457999999999999999999999999999999874  456677888766 77775 489999999999999999998 9


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCC-cCCc---cccceeeeeeecCChHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESG-QNGW---KDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~-~~~~---~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                      + +.  ++++++++|++|++.    .+.+.. +.+..+++.|| .||... .+.+   .|.++++++....+++..+.+.
T Consensus        93 i~~~--l~~~~ivi~~~gv~~----~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~  165 (338)
T 1np3_A           93 IEPN--LKKGATLAFAHGFSI----HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVAL  165 (338)
T ss_dssp             TGGG--CCTTCEEEESCCHHH----HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHH
T ss_pred             HHhh--CCCCCEEEEcCCchh----HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHH
Confidence            8 77  889999999987543    223333 44567999999 555531 1112   3778887876555677889999


Q ss_pred             HHHHHcCC-e--EEEcChhHHHHHHHHhhh------hHHHHHHHH---hhccccc--------------Ccc-cCcchHH
Q 023897          161 RIFESEGC-K--MLEMSCEEHDKVAAKSQF------LTHTIGRVL---SELEIQS--------------TSM-NTKGFET  213 (275)
Q Consensus       161 ~l~~~~G~-~--v~~~~~~~hD~~~a~~~~------lp~~~a~~l---~~~~~~~--------------~~l-~~~~~~~  213 (275)
                      ++++.+|. +  ++.+++++||...++++|      +||+++.++   ++.|++.              ..+ +.++|++
T Consensus       166 ~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~~~~~~~~~~gg~~~  245 (338)
T 1np3_A          166 SYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIAN  245 (338)
T ss_dssp             HHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHhcCHHH
Confidence            99999998 6  899999999999898888      999998877   6666542              134 6889999


Q ss_pred             HHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhcch
Q 023897          214 LIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKM  261 (275)
Q Consensus       214 ~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~~l~~~~~~l~~~~  261 (275)
                      + |++.++    |.+|.++++.|+ .++  ++|.+.|+++++.|++++
T Consensus       246 ~-r~a~s~----p~~~~d~~~~~~-~~~--~~~~~~l~~~~~~i~~~~  285 (338)
T 1np3_A          246 M-NYSISN----NAEYGEYVTGPE-VIN--AESRAAMRNALKRIQDGE  285 (338)
T ss_dssp             H-HHHSCH----HHHHHHHHHHHH-HSC--HHHHHHHHHHHHHHHTTH
T ss_pred             H-HHhcCC----HHHHhhhhcCCc-ccc--HHHHHHHHHHHHHHhCCH
Confidence            9 988766    999999999998 224  888889999998888854

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.95  E-value=1.3e-27  Score=207.27  Aligned_cols=243  Identities=15%  Similarity=0.149  Sum_probs=186.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC---eEEEEcCChh-hhHH-HHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH---ILRATSRTDH-SQLC-HRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~---~V~~~dr~~~-~~~a-~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      .+|||+|||+|+||++++..|.++|+   +|++|||+++ .+.. .+.|+..+.++.++ ++++|+||+|||++.+.+++
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~-~~~aDvVilav~p~~~~~vl   80 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQG-ALNADVVVLAVKPHQIKMVC   80 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHH-HSSCSEEEECSCGGGHHHHH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHH-HhcCCeEEEEeCHHHHHHHH
Confidence            45899999999999999999999998   9999999985 3333 34588888888886 48999999999999999999


Q ss_pred             hcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                      +++ +. .++++++++++ ++++   .+.+++.++.+.++++.||+.+...+    .+. ..+++....+++..+.++++
T Consensus        81 ~~l~~~-~l~~~~iiiS~~agi~---~~~l~~~l~~~~~vvr~mPn~p~~v~----~g~-~~l~~~~~~~~~~~~~v~~l  151 (280)
T 3tri_A           81 EELKDI-LSETKILVISLAVGVT---TPLIEKWLGKASRIVRAMPNTPSSVR----AGA-TGLFANETVDKDQKNLAESI  151 (280)
T ss_dssp             HHHHHH-HHTTTCEEEECCTTCC---HHHHHHHHTCCSSEEEEECCGGGGGT----CEE-EEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHhh-ccCCCeEEEEecCCCC---HHHHHHHcCCCCeEEEEecCChHHhc----Ccc-EEEEeCCCCCHHHHHHHHHH
Confidence            998 42 03566566654 4444   35667777766789999998655432    333 33444444578889999999


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL  232 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i  232 (275)
                      |+.+|..+++.++++||.+++++++.|+++.   .+|.+    .|++.   ..++.++|.+..+++... +.+|..|.+.
T Consensus       152 ~~~iG~~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~-~~~p~~l~~~  230 (280)
T 3tri_A          152 MRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALET-EQSVVQLRQF  230 (280)
T ss_dssp             HGGGEEEEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred             HHHCCCeEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHh
Confidence            9999975545578899999999999998764   45554    45553   468899999999999876 7889999998


Q ss_pred             HHHCH-HHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 023897          233 YIHNR-FAKQELLDLEAAFEKVKHKLQQKMEEVQ  265 (275)
Q Consensus       233 ~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~  265 (275)
                      +.++. .+.+.|+.|++  ..++..+.+...++.
T Consensus       231 v~spgGtT~~~l~~le~--~g~~~~~~~av~aa~  262 (280)
T 3tri_A          231 VTSPGGTTEQAIKVLES--GNLRELFIKALTAAV  262 (280)
T ss_dssp             HCCTTSHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHHH--CChHHHHHHHHHHHH
Confidence            88775 44688888876  367777777666654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.95  E-value=1.1e-26  Score=199.34  Aligned_cols=235  Identities=17%  Similarity=0.205  Sum_probs=181.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .+|||+|||+|.||++++..|.+.|    ++|++|||+++.     .|+....++.++ ++++|+||+|||++.+.+++.
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~-~~~~D~vi~~v~~~~~~~v~~   76 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEEL-ARHCDIIVCAVKPDIAGSVLN   76 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHH-HHHCSEEEECSCTTTHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHH-HhcCCEEEEEeCHHHHHHHHH
Confidence            4579999999999999999999999    799999999754     578777788775 478999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC---CceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE---MDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~---~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ++ +.  ++++.++++.++++..   .+++.++.+   .++++.||+.+.       .| .+++++....+++..+.+++
T Consensus        77 ~l~~~--l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~-------~g-~~~~~~~~~~~~~~~~~~~~  143 (262)
T 2rcy_A           77 NIKPY--LSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVG-------EG-SFIYCSNKNVNSTDKKYVND  143 (262)
T ss_dssp             HSGGG--CTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGT-------CE-EEEEEECTTCCHHHHHHHHH
T ss_pred             HHHHh--cCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHc-------CC-eEEEEeCCCCCHHHHHHHHH
Confidence            99 76  7555677778887764   344555543   345677776654       35 45566544346788899999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHh----hccccc---CcccCcchHHHHHHhhcCCCCChhhHHH
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLS----ELEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSG  231 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~----~~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~  231 (275)
                      +|+.+|. +++++++.||.+++++++.|+++..   ++.    ..|++.   ..+..++|++..+++... +.+|.+|.+
T Consensus       144 ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d  221 (262)
T 2rcy_A          144 IFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKS-DQPVQQLKD  221 (262)
T ss_dssp             HHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred             HHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHH
Confidence            9999996 8889999999999999999987632   222    345543   356788899999988543 446999999


Q ss_pred             HHHHCHHH-HHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          232 LYIHNRFA-KQELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       232 i~~~N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      ++..|+.. .+.++.|.+.  .++..+.+...+.+++
T Consensus       222 ~~~~~~~t~~~~l~~l~~~--~~~~~~~~a~~~~~~r  256 (262)
T 2rcy_A          222 NIVSPGGITAVGLYSLEKN--SFKYTVMNAVEAACEK  256 (262)
T ss_dssp             HHCCTTSHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHC--ChHHHHHHHHHHHHHH
Confidence            99877655 4888888774  7888888887777654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.95  E-value=9e-27  Score=202.61  Aligned_cols=232  Identities=15%  Similarity=0.152  Sum_probs=169.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+|||+|||+ |.||++++..|.+.|++|++|||+++ .+...+.|+... ++.++ +.++|+||+|||++.+.++++++
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~-~~~aDvVi~av~~~~~~~v~~~l   87 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGW-IDEADVVVLALPDNIIEKVAEDI   87 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGG-GGTCSEEEECSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHH-hcCCCEEEEcCCchHHHHHHHHH
Confidence            3579999999 99999999999999999999999985 344444676554 55564 48999999999999999999998


Q ss_pred             -CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc----CCccc-------cceeeeeeecCChHH
Q 023897           88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ----NGWKD-------FAFVYEKVRIRDEAT  155 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~----~~~~g-------~~~~~~~~~~~~~~~  155 (275)
                       +.  ++++++++|+++ .. ..+.+++. ..+.+|++.||++|++...    ..+.|       ...++++.. .+++.
T Consensus        88 ~~~--l~~~~ivv~~s~-~~-~~~~l~~~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~-~~~~~  161 (286)
T 3c24_A           88 VPR--VRPGTIVLILDA-AA-PYAGVMPE-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQ-GPEEH  161 (286)
T ss_dssp             GGG--SCTTCEEEESCS-HH-HHHTCSCC-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEE-SCTHH
T ss_pred             HHh--CCCCCEEEECCC-Cc-hhHHHHhh-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccC-CCHHH
Confidence             76  788999999654 33 33444443 3357899999999887320    01234       223333332 46788


Q ss_pred             HHHHHHHHHHcCC---eEEEcChhHHHHH-HHHh--hhhHHHHHHH--Hhh----ccccc---CcccCcchHHHHHHhhc
Q 023897          156 CSSFLRIFESEGC---KMLEMSCEEHDKV-AAKS--QFLTHTIGRV--LSE----LEIQS---TSMNTKGFETLIRLKES  220 (275)
Q Consensus       156 ~~~~~~l~~~~G~---~v~~~~~~~hD~~-~a~~--~~lp~~~a~~--l~~----~~~~~---~~l~~~~~~~~~rl~~~  220 (275)
                      .+.++++|+.+|.   +++++++++||.+ .+++  ++.+|+++.+  +.+    .|++.   ..+..++|++.+++...
T Consensus       162 ~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T 3c24_A          162 YAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG  241 (286)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999   8999999999999 8887  6888876544  553    36653   45788899998855443


Q ss_pred             CCCCChhhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 023897          221 SVNDSFDLFSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQ  265 (275)
Q Consensus       221 ~~~~~p~~~~~i~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~  265 (275)
                         .+|.+|.+++..|             ++.++..|+++|.+.+
T Consensus       242 ---~~p~~~~di~~~~-------------i~~~~~~l~~~~~~~~  270 (286)
T 3c24_A          242 ---YSPKVPSDAALRL-------------MEFAKDIVVKEDWREA  270 (286)
T ss_dssp             ---SSCCC---CCSTT-------------HHHHHHHHBCTTGGGG
T ss_pred             ---hCCchhHHHHHHH-------------HHHHHHHHhccCHHHh
Confidence               3599999999988             3556666666555443

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.94  E-value=4.3e-26  Score=194.27  Aligned_cols=225  Identities=13%  Similarity=0.148  Sum_probs=155.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChhh-hH-HHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDHS-QL-CHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~~-~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      +|||+|||+|+||++++..|.++|+    +|++|||+++. +. +.+.|+..+.+++++ ++++|+||+|||++.+.+++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~-~~~aDvVilav~~~~~~~v~   80 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEV-AKNADILILSIKPDLYASII   80 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHH-HHHCSEEEECSCTTTHHHHC
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHH-HHhCCEEEEEeCHHHHHHHH
Confidence            4799999999999999999999998    99999999853 33 345688888888886 48899999999999999999


Q ss_pred             hcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                      +++ +.  ++++++++ +.++++.   +.+++.++.+.++++.||+.+...+    .|. +.+++....+++.+++++++
T Consensus        81 ~~l~~~--l~~~~~vvs~~~gi~~---~~l~~~~~~~~~~v~~~p~~p~~~~----~g~-~~~~~~~~~~~~~~~~~~~l  150 (247)
T 3gt0_A           81 NEIKEI--IKNDAIIVTIAAGKSI---ESTENAFNKKVKVVRVMPNTPALVG----EGM-SALCPNEMVTEKDLEDVLNI  150 (247)
T ss_dssp             ---CCS--SCTTCEEEECSCCSCH---HHHHHHHCSCCEEEEEECCGGGGGT----CEE-EEEEECTTCCHHHHHHHHHH
T ss_pred             HHHHhh--cCCCCEEEEecCCCCH---HHHHHHhCCCCcEEEEeCChHHHHc----Cce-EEEEeCCCCCHHHHHHHHHH
Confidence            999 77  88887766 5566664   3455665656788888987655432    233 44444434578889999999


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL  232 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i  232 (275)
                      |+.+|. ++++++++||.++++++++|+++.   .+|++    .|++.   ..+..+++.+..++.... +.+|..|.+.
T Consensus       151 ~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~-~~~p~~l~~~  228 (247)
T 3gt0_A          151 FNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLET-GIHPGELKDM  228 (247)
T ss_dssp             HGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHS-CC--------
T ss_pred             HHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHh
Confidence            999996 777899999999999999997653   35544    56664   457889999999998776 7789999888


Q ss_pred             HHHCH-HHHHHHHHHHH
Q 023897          233 YIHNR-FAKQELLDLEA  248 (275)
Q Consensus       233 ~~~N~-~~~~~l~~~~~  248 (275)
                      +.++. .+++.|+.|++
T Consensus       229 v~spgG~t~~gl~~le~  245 (247)
T 3gt0_A          229 VCSPGGTTIEAVATLEE  245 (247)
T ss_dssp             -----------------
T ss_pred             cCCCCchHHHHHHHHHh
Confidence            77554 45677776654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.93  E-value=3.9e-25  Score=195.44  Aligned_cols=242  Identities=14%  Similarity=0.128  Sum_probs=175.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCChh---hhHHHHcCceEecChHHHhccCCCEEEEecCchhH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTDH---SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~~---~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      .+.+|||+|||+|+||+++|..|.++|    ++|++|+|+++   .+...+.|+....++.++ +.++|+||+|||++.+
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~-~~~aDvVilav~~~~~   97 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKET-VQHSDVLFLAVKPHII   97 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHH-HHHCSEEEECSCGGGH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHH-hccCCEEEEEeCHHHH
Confidence            345689999999999999999999999    89999999974   344456788888888775 4789999999999999


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCC-CCChhHHHHHHhhCC---CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHH
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVL-SVKEYPRNVLLQVLP---EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEAT  155 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~---~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~  155 (275)
                      .+++.++ +.  ++++++++|++ +++..   .+.+.++   .+.++++.||+.+....    .+. .+++.....+++.
T Consensus        98 ~~vl~~l~~~--l~~~~ivvs~s~gi~~~---~l~~~l~~~~~~~~vv~~~p~~p~~~~----~g~-~v~~~g~~~~~~~  167 (322)
T 2izz_A           98 PFILDEIGAD--IEDRHIVVSCAAGVTIS---SIEKKLSAFRPAPRVIRCMTNTPVVVR----EGA-TVYATGTHAQVED  167 (322)
T ss_dssp             HHHHHHHGGG--CCTTCEEEECCTTCCHH---HHHHHHHTTSSCCEEEEEECCGGGGGT----CEE-EEEEECTTCCHHH
T ss_pred             HHHHHHHHhh--cCCCCEEEEeCCCCCHH---HHHHHHhhcCCCCeEEEEeCCcHHHHc----CCe-EEEEeCCCCCHHH
Confidence            9999998 76  78899999986 44432   2333332   13578899998777643    343 4444433335778


Q ss_pred             HHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCC
Q 023897          156 CSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDS  225 (275)
Q Consensus       156 ~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~  225 (275)
                      .+.++++|+.+|.++ +++++.+|.+++++++.|++++   .++++    .|++.   ..+..++|.+..++.... +.+
T Consensus       168 ~~~v~~ll~~~G~~~-~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~-~~~  245 (322)
T 2izz_A          168 GRLMEQLLSSVGFCT-EVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHS-EQH  245 (322)
T ss_dssp             HHHHHHHHHTTEEEE-ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHC-SSC
T ss_pred             HHHHHHHHHhCCCEE-EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            899999999999765 4678999999999999998654   23333    46653   457888999999988643 446


Q ss_pred             hhhHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHhcchhHH
Q 023897          226 FDLFSGLYIHNRFA-KQELLDLEAAFEKVKHKLQQKMEEV  264 (275)
Q Consensus       226 p~~~~~i~~~N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~  264 (275)
                      |.+|.+.+..|... ...++.|.+  ..++..+.+...+.
T Consensus       246 p~~l~~~v~sp~g~t~~~l~~l~~--~g~~~~~~~av~~~  283 (322)
T 2izz_A          246 PGQLKDNVSSPGGATIHALHVLES--GGFRSLLINAVEAS  283 (322)
T ss_dssp             HHHHHHHHCCTTSHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHH--CCHHHHHHHHHHHH
Confidence            99999999777543 467766655  24444444444433

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.92  E-value=6.3e-24  Score=181.92  Aligned_cols=240  Identities=13%  Similarity=0.153  Sum_probs=174.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+|||+|||+|.||++++..|.+.|++|.+|||+++. + .+.+.|+..+.+++++ ++++|+||+|+|++.+.+++.++
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~D~Vi~~v~~~~~~~v~~~l   80 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL-IDQVDLVILGIKPQLFETVLKPL   80 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH-HHTCSEEEECSCGGGHHHHHTTS
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHH-HhcCCEEEEEeCcHhHHHHHHHh
Confidence            3579999999999999999999999999999999853 3 3334588777788886 47999999999999888888775


Q ss_pred             CCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           88 PVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                           .+++++++.. +++..   .+++.++.+.+++..||.......    .|. ..++.....+++..+.++++|+.+
T Consensus        81 -----~~~~~vv~~~~~~~~~---~l~~~~~~~~~~v~~~p~~~~~~~----~g~-~~i~~~~~~~~~~~~~~~~ll~~~  147 (259)
T 2ahr_A           81 -----HFKQPIISMAAGISLQ---RLATFVGQDLPLLRIMPNMNAQIL----QSS-TALTGNALVSQELQARVRDLTDSF  147 (259)
T ss_dssp             -----CCCSCEEECCTTCCHH---HHHHHHCTTSCEEEEECCGGGGGT----CEE-EEEEECTTCCHHHHHHHHHHHHTT
T ss_pred             -----ccCCEEEEeCCCCCHH---HHHHhcCCCCCEEEEcCCchHHHc----Cce-EEEEcCCCCCHHHHHHHHHHHHhC
Confidence                 3567888874 55543   455555544566665553322211    343 333333233677889999999999


Q ss_pred             CCeEEEcChhHHHHHHHHhhhhHHH-------HHHHHhhccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHHHC
Q 023897          167 GCKMLEMSCEEHDKVAAKSQFLTHT-------IGRVLSELEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYIHN  236 (275)
Q Consensus       167 G~~v~~~~~~~hD~~~a~~~~lp~~-------~a~~l~~~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N  236 (275)
                      | +++++++++||.++++.++.|++       ++.+..+.|++.   ..+..++|++..++.... +.+|.+|.+.+..|
T Consensus       148 G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~~~p  225 (259)
T 2ahr_A          148 G-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTS-SQSPHDFIDAICSP  225 (259)
T ss_dssp             E-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHS-SSCHHHHHHHHCCT
T ss_pred             C-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhCCCC
Confidence            9 78999999999999876555543       333444566653   357788999999988754 55799999888777


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897          237 RFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       237 ~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      .... ..++.|.+  ..++..+.+...+.+++
T Consensus       226 ~~~~~~~~~~l~~--~g~~~~~~~a~~~~~~r  255 (259)
T 2ahr_A          226 GGTTIAGLMELER--LGLTATVSSAIDKTIDK  255 (259)
T ss_dssp             TSHHHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHH--CChHHHHHHHHHHHHHH
Confidence            6554 78888876  57888888887777654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.91  E-value=4e-24  Score=178.85  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=124.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      .+..|||+|||+|+||++||..|+++|++|++|++.                 ++ + .++|  |+|||++.+.+++.++
T Consensus         3 ~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------~~-~-~~aD--ilavP~~ai~~vl~~l   61 (232)
T 3dfu_A            3 QAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------ED-I-RDFE--LVVIDAHGVEGYVEKL   61 (232)
T ss_dssp             CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------GG-G-GGCS--EEEECSSCHHHHHHHH
T ss_pred             CCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------HH-h-ccCC--EEEEcHHHHHHHHHHH
Confidence            456689999999999999999999999999999983                 22 2 6789  9999999999999999


Q ss_pred             -CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           88 -PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        88 -~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                       +.  ++++++++|+ +++|..+.+.+.+   .+..|++.|||+|.          +++++..   +++..+.++++++.
T Consensus        62 ~~~--l~~g~ivvd~sgs~~~~vl~~~~~---~g~~fvg~HPm~g~----------~~~i~a~---d~~a~~~l~~L~~~  123 (232)
T 3dfu_A           62 SAF--ARRGQMFLHTSLTHGITVMDPLET---SGGIVMSAHPIGQD----------RWVASAL---DELGETIVGLLVGE  123 (232)
T ss_dssp             HTT--CCTTCEEEECCSSCCGGGGHHHHH---TTCEEEEEEEEETT----------EEEEEES---SHHHHHHHHHHHHH
T ss_pred             HHh--cCCCCEEEEECCcCHHHHHHHHHh---CCCcEEEeeeCCCC----------ceeeeCC---CHHHHHHHHHHHHH
Confidence             77  8899999996 4677766666553   35789999999754          3444432   66789999999999


Q ss_pred             cCCeEEEcChhHHHHHHHHhhhhHHHHHH
Q 023897          166 EGCKMLEMSCEEHDKVAAKSQFLTHTIGR  194 (275)
Q Consensus       166 ~G~~v~~~~~~~hD~~~a~~~~lp~~~a~  194 (275)
                      +|++++.+++++||.++|.++|+||+++.
T Consensus       124 lG~~vv~~~~~~hd~~~AAvsh~nhLv~L  152 (232)
T 3dfu_A          124 LGGSIVEIADDKRAQLAAALTYAGFLSTL  152 (232)
T ss_dssp             TTCEECCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEeCHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.91  E-value=4.6e-23  Score=176.79  Aligned_cols=238  Identities=13%  Similarity=0.146  Sum_probs=173.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-hhHH-HHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-SQLC-HRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~~~a-~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      |||+|||+|.||++++..|.+.| ++|++|||+++ .+.. .+.|+..+.+++++ + ++|+||+|||+..+.+++.++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~-~-~~D~vi~~v~~~~~~~v~~~l~   78 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPEL-H-SDDVLILAVKPQDMEAACKNIR   78 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCC-C-TTSEEEECSCHHHHHHHHTTCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHH-h-cCCEEEEEeCchhHHHHHHHhc
Confidence            68999999999999999999999 99999999985 3333 33588877777774 6 8999999999989999998872


Q ss_pred             CCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCC
Q 023897           89 VHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGC  168 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~  168 (275)
                      .   + +++++|+++....  +.+++.++.+.+++..+|.......    .|...++. ....+++..+.++++|+.+|.
T Consensus        79 ~---~-~~ivv~~~~g~~~--~~l~~~~~~~~~~v~~~~~~~~~~~----~g~~~i~~-~~~~~~~~~~~~~~l~~~~g~  147 (263)
T 1yqg_A           79 T---N-GALVLSVAAGLSV--GTLSRYLGGTRRIVRVMPNTPGKIG----LGVSGMYA-EAEVSETDRRIADRIMKSVGL  147 (263)
T ss_dssp             C---T-TCEEEECCTTCCH--HHHHHHTTSCCCEEEEECCGGGGGT----CEEEEEEC-CTTSCHHHHHHHHHHHHTTEE
T ss_pred             c---C-CCEEEEecCCCCH--HHHHHHcCCCCcEEEEcCCHHHHHc----CceEEEEc-CCCCCHHHHHHHHHHHHhCCC
Confidence            1   3 7899998443332  6677777665577776654332221    34433333 222367788999999999998


Q ss_pred             eEEEcC-hhHHHHHHHHhhhhHHHHHHHH---hh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHHHCH
Q 023897          169 KMLEMS-CEEHDKVAAKSQFLTHTIGRVL---SE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNR  237 (275)
Q Consensus       169 ~v~~~~-~~~hD~~~a~~~~lp~~~a~~l---~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~  237 (275)
                      ++ +++ ++.||.+++++++.|++++..+   .+    .|++.   ..+..+++++..++.... +.+|.+|.+....|.
T Consensus       148 ~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  225 (263)
T 1yqg_A          148 TV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQT-GEDFEKLQKNVTSKG  225 (263)
T ss_dssp             EE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHTCCTT
T ss_pred             EE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhcCCCC
Confidence            77 677 8899999999999998765433   22    45543   346788899999888754 556889999888777


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897          238 FAK-QELLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       238 ~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                      ... ..++.|.+  ..++..+.+...+.++
T Consensus       226 ~~~~~~l~~l~~--~~~~~~~~~a~~~~~~  253 (263)
T 1yqg_A          226 GTTHEAVEAFRR--HRVAEAISEGVCACVR  253 (263)
T ss_dssp             SHHHHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH--CCHHHHHHHHHHHHHH
Confidence            554 77777755  3466666655555443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.87  E-value=3.1e-21  Score=167.68  Aligned_cols=169  Identities=15%  Similarity=0.129  Sum_probs=136.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC-chhHHHHh---hc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS-ILSLSEVL---NS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp-~~~~~~v~---~~   86 (275)
                      |||+|||+|.||+++|..|.+.|++|++|||+++ .+...+.|+..+++++++ ++++|+||+||| +..+.+++   ++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEV-VESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHH-HhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            7999999999999999999999999999999985 455666788888899986 488999999999 46788888   77


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++|++++.....+.+.+.+. .+..|+. ||++|....  ...+...++++.   +++.+++++++|+
T Consensus        81 l~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~gg---~~~~~~~~~~ll~  152 (287)
T 3pef_A           81 VLEG--IGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP--AEDGTLIILAAG---DRNLYDEAMPGFE  152 (287)
T ss_dssp             HHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH--HHHTCEEEEEEE---CHHHHHHHHHHHH
T ss_pred             Hhhc--CCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH--HhcCCEEEEEeC---CHHHHHHHHHHHH
Confidence            7 66  78999999999888766665555432 3567887 898887632  123444555543   6788999999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      .+|.+++++++..++..+.+++++.
T Consensus       153 ~~g~~~~~~g~~g~~~~~Kl~~N~~  177 (287)
T 3pef_A          153 KMGKKIIHLGDVGKGAEMKLVVNMV  177 (287)
T ss_dssp             HHEEEEEECSSTTHHHHHHHHHHHH
T ss_pred             HhCCCeEEeCCCCHHHHHHHHHHHH
Confidence            9999999998888898888877655

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.86  E-value=9.4e-21  Score=166.46  Aligned_cols=173  Identities=12%  Similarity=0.118  Sum_probs=137.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL-   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~-   84 (275)
                      ...+|||+|||+|.||..+|..|.+.|++|++|||+++ .+...+.|+..+++++++ ++++|+||+|||.. .+.+++ 
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~-~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEV-IKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHH
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHH-HHhCCEEEEEcCCHHHHHHHHh
Confidence            44678999999999999999999999999999999985 455667788888899986 48899999999975 678888 


Q ss_pred             --hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           85 --NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        85 --~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                        +++ +.  ++++++++|+++++....+.+.+.+. .+..|+. ||++|....  ...+...++++.   +++.+++++
T Consensus        97 ~~~~l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~  168 (310)
T 3doj_A           97 DKGGVLEQ--ICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKP--AEDGQLIILAAG---DKALFEESI  168 (310)
T ss_dssp             STTCGGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH--HHHTCEEEEEEE---CHHHHHHHH
T ss_pred             Cchhhhhc--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhH--HhcCCeEEEEcC---CHHHHHHHH
Confidence              777 66  88999999999988776666655442 3567877 898876532  124554555543   678899999


Q ss_pred             HHHHHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          161 RIFESEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      ++|+.+|.+++++++......+.++.+..
T Consensus       169 ~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~  197 (310)
T 3doj_A          169 PAFDVLGKRSFYLGQVGNGAKMKLIVNMI  197 (310)
T ss_dssp             HHHHHHEEEEEECSSTTHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCcCHHHHHHHHHHHH
Confidence            99999999999997666666777765444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.86  E-value=1.6e-20  Score=164.46  Aligned_cols=170  Identities=13%  Similarity=0.188  Sum_probs=130.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-ecChHHHhccCCCEEEEecCch-hHHHHh-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-FSDKRAFLEADNDVILISTSIL-SLSEVL-   84 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~-~~~~v~-   84 (275)
                      .++|||+|||+|.||+++|..|.+.|++|++|||+++ .+...+.|... +++++++ ++++|+||+|||+. .+..++ 
T Consensus         5 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~-~~~aDvvi~~vp~~~~~~~v~~   83 (303)
T 3g0o_A            5 GTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREF-AGVVDALVILVVNAAQVRQVLF   83 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTT-TTTCSEEEECCSSHHHHHHHHC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHH-HhcCCEEEEECCCHHHHHHHHh
Confidence            3457999999999999999999999999999999985 45556668776 7888885 58999999999985 677887 


Q ss_pred             --hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           85 --NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        85 --~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                        +++ +.  ++++++++|+++++....+.+.+.+. .+..|+. ||++|....  ...+...++++   .+++.+++++
T Consensus        84 ~~~~l~~~--l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~g---g~~~~~~~~~  155 (303)
T 3g0o_A           84 GEDGVAHL--MKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVK--AAQGEMTVMAS---GSEAAFTRLK  155 (303)
T ss_dssp             --CCCGGG--SCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHH--HHTTCEEEEEE---CCHHHHHHHH
T ss_pred             ChhhHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhh--hhcCCeEEEeC---CCHHHHHHHH
Confidence              788 76  88999999999988766666655443 3567887 999876532  12344455553   2678899999


Q ss_pred             HHHHHcCCeEEEcCh-hHHHHHHHHhhh
Q 023897          161 RIFESEGCKMLEMSC-EEHDKVAAKSQF  187 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~-~~hD~~~a~~~~  187 (275)
                      ++|+.+|.+++++++ ......+.++.+
T Consensus       156 ~ll~~~g~~~~~~~~~~g~a~~~Kl~~N  183 (303)
T 3g0o_A          156 PVLDAVASNVYRISDTPGAGSTVKIIHQ  183 (303)
T ss_dssp             HHHHHHEEEEEEEESSTTHHHHHHHHHH
T ss_pred             HHHHHHCCCEEECCCCCcHHHHHHHHHH
Confidence            999999999888875 444455555543

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.85  E-value=2.4e-20  Score=162.89  Aligned_cols=170  Identities=16%  Similarity=0.178  Sum_probs=136.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc--
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS--   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~--   86 (275)
                      |+||||||+|.||..||++|.++||+|++|||+++ .+...+.|.....++.++ ++++|+||+|+|... +.+++..  
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~-~~~~dvv~~~l~~~~~v~~V~~~~~   81 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA-VQGADVVISMLPASQHVEGLYLDDD   81 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH-HTTCSEEEECCSCHHHHHHHHHSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHH-HhcCCceeecCCchHHHHHHHhchh
Confidence            56899999999999999999999999999999995 456677899999999996 589999999999864 5677754  


Q ss_pred             -C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           87 -L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        87 -l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                       + +.  +++|++++|++++.....+.+.+.+ ..+..|+. -|++|...+.  ..|...+++.+   +++.+++++++|
T Consensus        82 g~~~~--~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lD-aPVsGg~~~A--~~G~L~imvGG---~~~~~~~~~p~l  153 (300)
T 3obb_A           82 GLLAH--IAPGTLVLECSTIAPTSARKIHAAARERGLAMLD-APVSGGTAGA--AAGTLTFMVGG---DAEALEKARPLF  153 (300)
T ss_dssp             SSTTS--CCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHH--HHTCEEEEEES---CHHHHHHHHHHH
T ss_pred             hhhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-cCCCCCHHHH--HhCCEEEEEeC---CHHHHHHHHHHH
Confidence             4 44  7899999999998887777776665 35678887 4888766431  24555666643   688999999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +.+|.+++++.+......+.+++++-
T Consensus       154 ~~~g~~i~~~G~~G~g~~~Kl~~N~l  179 (300)
T 3obb_A          154 EAMGRNIFHAGPDGAGQVAKVCNNQL  179 (300)
T ss_dssp             HHHEEEEEEEESTTHHHHHHHHHHHH
T ss_pred             HHhCCCEEEeCCccHHHHHHHHHHHH
Confidence            99999999998777777777765443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.85  E-value=5.8e-21  Score=170.61  Aligned_cols=212  Identities=15%  Similarity=0.223  Sum_probs=151.0

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcC--------------ceEecChHHHhccCCCE
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSG--------------ISFFSDKRAFLEADNDV   70 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g--------------~~~~~~~~~~~~~~aD~   70 (275)
                      ++.+.+|||+|||+|.||+++|..|+++|++|++|+|+++ .+...+.+              +..+++++++ ++++|+
T Consensus        24 ~m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea-~~~aDv  102 (356)
T 3k96_A           24 AMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS-LEGVTD  102 (356)
T ss_dssp             ---CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH-HTTCCE
T ss_pred             cccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH-HhcCCE
Confidence            4445678999999999999999999999999999999975 33222222              3566788876 489999


Q ss_pred             EEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCC-CCh---hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceee
Q 023897           71 ILISTSILSLSEVLNSL-PVHCLQRRTLIADVLS-VKE---YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVY  145 (275)
Q Consensus        71 iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s-~k~---~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~  145 (275)
                      ||+|||++.+.++++++ +.  ++++++++++.. +..   .+.+.+++.++.....    -+.||+.+.+...+.+...
T Consensus       103 VilaVp~~~~~~vl~~i~~~--l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~----vlsgP~~a~ev~~g~pt~~  176 (356)
T 3k96_A          103 ILIVVPSFAFHEVITRMKPL--IDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMA----VISGPSLATEVAANLPTAV  176 (356)
T ss_dssp             EEECCCHHHHHHHHHHHGGG--CCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEE----EEESSCCHHHHHTTCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEE----EEECccHHHHHHcCCCeEE
Confidence            99999999999999999 77  888999888653 221   2234555655521111    2346665544445666655


Q ss_pred             eeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-ccc--cc-CcccCcchHHHHHHh
Q 023897          146 EKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEI--QS-TSMNTKGFETLIRLK  218 (275)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~--~~-~~l~~~~~~~~~rl~  218 (275)
                      +.. +.+++..+.++++|+..|+++++.+    |...+.. ..+.++++.+..  + +++  +. ..+.+.++.++.|++
T Consensus       177 via-~~~~~~~~~v~~lf~~~~~rv~~~~----Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~  251 (356)
T 3k96_A          177 SLA-SNNSQFSKDLIERLHGQRFRVYKND----DMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLV  251 (356)
T ss_dssp             EEE-ESCHHHHHHHHHHHCCSSEEEEEES----CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEe-cCCHHHHHHHHHHhCCCCeeEEEeC----CHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Confidence            433 3477888999999999999998876    5555444 477777765433  2 222  21 457889999999999


Q ss_pred             hcCCCCChhhHH
Q 023897          219 ESSVNDSFDLFS  230 (275)
Q Consensus       219 ~~~~~~~p~~~~  230 (275)
                      ... +.+|+++.
T Consensus       252 ~a~-G~~~~t~~  262 (356)
T 3k96_A          252 SVF-GGKQETLT  262 (356)
T ss_dssp             HHT-TCCHHHHT
T ss_pred             HHh-CCChHhhc
Confidence            987 88998776

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.84  E-value=3.2e-20  Score=161.25  Aligned_cols=170  Identities=14%  Similarity=0.111  Sum_probs=132.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---h
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---N   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~   85 (275)
                      ||||+|||+|.||.++|..|.+.|++|++|||+++ .+...+.|+..+++++++ ++++|+||+|||+. .+.+++   +
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~advvi~~v~~~~~~~~v~~~~~   79 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEV-CAACDITIAMLADPAAAREVCFGAN   79 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHH-HHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHH-HHcCCEEEEEcCCHHHHHHHHcCch
Confidence            46899999999999999999999999999999985 455566688888899986 48899999999986 788888   7


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      ++ +.  ++++++++|+++++....+.+.+.+. .+..|+.. |++|....  ...+...+++..   +++.+++++++|
T Consensus        80 ~l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~--a~~g~l~~~~gg---~~~~~~~~~~ll  151 (287)
T 3pdu_A           80 GVLEG--IGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKKP--AEDGTLIILAAG---DQSLFTDAGPAF  151 (287)
T ss_dssp             CGGGT--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHHH--HHHTCEEEEEEE---CHHHHHHTHHHH
T ss_pred             hhhhc--ccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHHH--HhcCCEEEEEeC---CHHHHHHHHHHH
Confidence            77 66  78999999999988766666655442 35677774 88776532  113444555432   678899999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      +.+|.+++++++......+.++++..
T Consensus       152 ~~~g~~~~~~g~~g~~~~~Kl~~N~~  177 (287)
T 3pdu_A          152 AALGKKCLHLGEVGQGARMKLVVNMI  177 (287)
T ss_dssp             HHHEEEEEECSSTTHHHHHHHHHHHH
T ss_pred             HHhCCCEEEcCCCChHHHHHHHHHHH
Confidence            99999999987666666666665443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.84  E-value=5.3e-20  Score=160.61  Aligned_cols=169  Identities=15%  Similarity=0.141  Sum_probs=133.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHhhcC-
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVLNSL-   87 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~~~l-   87 (275)
                      +|||+|||+|.||..+|..|.++|++|++|||+++ .+...+.|+..+++++++ ++ +|+||+|||. ..+.++++++ 
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~-aDvvi~~vp~~~~~~~v~~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADV-AA-ADLIHITVLDDAQVREVVGELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHH-TT-SSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHH-Hh-CCEEEEECCChHHHHHHHHHHH
Confidence            57999999999999999999999999999999985 456667789888899996 47 9999999996 4678888888 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                      +.  ++++++++|+++++....+.+.+.+. .+..|+. +|++|+...  ...+...+++..   +++.+++++++|+.+
T Consensus        93 ~~--l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~gg---~~~~~~~~~~ll~~~  164 (296)
T 3qha_A           93 GH--AKPGTVIAIHSTISDTTAVELARDLKARDIHIVD-APVSGGAAA--AARGELATMVGA---DREVYERIKPAFKHW  164 (296)
T ss_dssp             TT--CCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE-CCEESCHHH--HHHTCEEEEEEC---CHHHHHHHHHHHHHH
T ss_pred             Hh--cCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHHH--HhcCCccEEecC---CHHHHHHHHHHHHHH
Confidence            77  88999999999988776666665543 3567776 688876532  123444555432   678899999999999


Q ss_pred             CCeEEEcChhHHHHHHHHhhhhH
Q 023897          167 GCKMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       167 G~~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      |.+++++++......+.++.+..
T Consensus       165 g~~~~~~g~~g~a~~~Kl~~N~~  187 (296)
T 3qha_A          165 AAVVIHAGEPGAGTRMKLARNML  187 (296)
T ss_dssp             EEEEEEEESTTHHHHHHHHHHHH
T ss_pred             cCCeEEcCChhHHHHHHHHHHHH
Confidence            99998887666666666665443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.84  E-value=4.4e-20  Score=158.51  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=141.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .+|||+|||+|.||+.++..|.+.|++ |.+|||+++ .+ .....|+..+.+++++ ++++|+||+|||++.+.+++++
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~Dvvi~av~~~~~~~v~~~   87 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEV-NPYAKLYIVSLKDSAFAELLQG   87 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGS-CSCCSEEEECCCHHHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHH-hcCCCEEEEecCHHHHHHHHHH
Confidence            357999999999999999999999998 899999985 33 3344588888888885 5899999999999999999998


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES  165 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  165 (275)
                      + +.  ++++++++++++....  +.+.+.++....+....|+.|+..  ..+.+.++++.   +.+++..+.++++|+.
T Consensus        88 l~~~--~~~~~ivv~~s~~~~~--~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~v~---~~~~~~~~~~~~l~~~  158 (266)
T 3d1l_A           88 IVEG--KREEALMVHTAGSIPM--NVWEGHVPHYGVFYPMQTFSKQRE--VDFKEIPFFIE---ASSTEDAAFLKAIAST  158 (266)
T ss_dssp             HHTT--CCTTCEEEECCTTSCG--GGSTTTCSSEEEEEECCCC---CC--CCCTTCCEEEE---ESSHHHHHHHHHHHHT
T ss_pred             HHhh--cCCCcEEEECCCCCch--HHHHHHHHhccCcCCceecCCCch--hhcCCCeEEEe---cCCHHHHHHHHHHHHh
Confidence            8 76  7889999998876542  334544442111223344444332  13344554442   3367788999999999


Q ss_pred             cCCeEEEcChhH---HHHHHHHhhhhHHH---HHHHHhh-ccccc---CcccCcchHHHHHHh
Q 023897          166 EGCKMLEMSCEE---HDKVAAKSQFLTHT---IGRVLSE-LEIQS---TSMNTKGFETLIRLK  218 (275)
Q Consensus       166 ~G~~v~~~~~~~---hD~~~a~~~~lp~~---~a~~l~~-~~~~~---~~l~~~~~~~~~rl~  218 (275)
                      +|.+++++++++   +|..++++++++..   ++.++.+ .|++.   .++...++.+..++.
T Consensus       159 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~~~~~~~~  221 (266)
T 3d1l_A          159 LSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELE  221 (266)
T ss_dssp             TCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHSC
T ss_pred             cCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC
Confidence            999999999775   78888888888843   2344443 56653   235566666666654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.83  E-value=1.2e-19  Score=160.13  Aligned_cols=171  Identities=16%  Similarity=0.179  Sum_probs=132.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~~   85 (275)
                      .+.+|||+|||+|.||..+|..|.+.|++|++|||+++ .+...+.|+..+++++++ ++++|+||+|||. ..+.+++.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~-~~~aDvVi~~vp~~~~~~~v~~  106 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAA-ARDADIVVSMLENGAVVQDVLF  106 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHH-HTTCSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHH-HhcCCEEEEECCCHHHHHHHHc
Confidence            34568999999999999999999999999999999985 455556688888999986 5899999999996 56788886


Q ss_pred             --cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           86 --SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        86 --~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                        .+ +.  ++++++++|+++++....+.+.+.+. .+..|+. .|++|+...  ...+...+++++   +++.++++++
T Consensus       107 ~~~~~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~~  178 (320)
T 4dll_A          107 AQGVAAA--MKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTVG--AEQGTLVIMAGG---KPADFERSLP  178 (320)
T ss_dssp             TTCHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHHH--HHHTCEEEEEES---CHHHHHHHHH
T ss_pred             chhHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHhH--HhcCCeeEEeCC---CHHHHHHHHH
Confidence              66 66  78999999999988776666655442 3567877 588876532  113444555532   6788999999


Q ss_pred             HHHHcCCeEEEcChhHHHHHHHHhhhh
Q 023897          162 IFESEGCKMLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       162 l~~~~G~~v~~~~~~~hD~~~a~~~~l  188 (275)
                      +|+.+ .+++++++......+.++.++
T Consensus       179 ll~~~-~~~~~~g~~g~a~~~Kl~~N~  204 (320)
T 4dll_A          179 LLKVF-GRATHVGPHGSGQLTKLANQM  204 (320)
T ss_dssp             HHHHH-EEEEEEESTTHHHHHHHHHHH
T ss_pred             HHHhc-CCEEEeCCccHHHHHHHHHHH
Confidence            99999 888888766666666666544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.82  E-value=7.6e-23  Score=191.72  Aligned_cols=229  Identities=11%  Similarity=0.073  Sum_probs=169.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      .....++|||||+|+||+++|+.|+..|++|++||++.....+.+.|+... +++++ +++||+|++|+|.. .+..++.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~e~-~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDL-LARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEEC-CHHHH-HHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEc-CHHHH-HhcCCEEEECCCCchHHHHHhC
Confidence            345678999999999999999999999999999999875445666788765 78886 58999999999997 6677776


Q ss_pred             c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC------CCceeecCCCCCCCCCcCCccccceeeeeeec-CChHHH
Q 023897           86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE------EMDVLCTHPMFGPESGQNGWKDFAFVYEKVRI-RDEATC  156 (275)
Q Consensus        86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~------~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~-~~~~~~  156 (275)
                      + + +.  ++++++++|++.......+.+.+.+..      ...|++.||+..    .+.+.+..++++|..+ .+.+..
T Consensus       216 ~~~~~~--~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~----~~L~~~~~vilTPh~~~~t~ea~  289 (529)
T 1ygy_A          216 KEALAK--TKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTD----SPLFELAQVVVTPHLGASTAEAQ  289 (529)
T ss_dssp             HHHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSC----CGGGGCTTEEECSSCSSCBHHHH
T ss_pred             HHHHhC--CCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCC----chHHhCCCEEEccccCCCCHHHH
Confidence            5 4 55  889999999985433222334444432      235788899742    2456777788888765 455555


Q ss_pred             HH-----HHHHHHHcCCeE----EEcC-hhHHHHHHHHhhhhHHHHHHHHhh-cccccCcccCcchHHHHHHhhcCCCCC
Q 023897          157 SS-----FLRIFESEGCKM----LEMS-CEEHDKVAAKSQFLTHTIGRVLSE-LEIQSTSMNTKGFETLIRLKESSVNDS  225 (275)
Q Consensus       157 ~~-----~~~l~~~~G~~v----~~~~-~~~hD~~~a~~~~lp~~~a~~l~~-~~~~~~~l~~~~~~~~~rl~~~~~~~~  225 (275)
                      +.     +++++..++...    +.++ +++||.+.      ||+   .|++ .|.....+++++|++++|++.+.    
T Consensus       290 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~~~~hd~i~------P~l---~La~~lg~~~~qla~g~~~ditria~G~----  356 (529)
T 1ygy_A          290 DRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVA------PWL---DLVRKLGVLAGVLSDELPVSLSVQVRGE----  356 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTBCSCCSTTSCTTTT------THH---HHHHHHHHHHHHTSSSCCSEEEEEEEEG----
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCcccccchhhh------hHH---HHHHHHHHHHHHHhCCCceEEEEEEEee----
Confidence            54     667777777654    5678 79999776      776   2322 23223458899999999999876    


Q ss_pred             hhhHHHHHHHCHHHH-HHHHHHHHHHHHHHHHH
Q 023897          226 FDLFSGLYIHNRFAK-QELLDLEAAFEKVKHKL  257 (275)
Q Consensus       226 p~~~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l  257 (275)
                      |.+ .+++..|+..+ ..|+.+.+++.++++++
T Consensus       357 ~~~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~  388 (529)
T 1ygy_A          357 LAA-EEVEVLRLSALRGLFSAVIEDAVTFVNAP  388 (529)
T ss_dssp             GGG-SCCHHHHHHHHHHHTGGGSCTTCCCCCHH
T ss_pred             ccc-cCCcHHHHHHHHHhcCCCCCCCccccCHH
Confidence            888 78999999987 88999888887887773

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.82  E-value=2.8e-19  Score=157.18  Aligned_cols=167  Identities=18%  Similarity=0.211  Sum_probs=128.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC--hh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT--DH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~--~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      +.+|||+|||+|.||+++|..|.+.|+ +|++|||+  ++ .+...+.|+..++++.++ ++++|+||+|||++...+++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~-~~~aDvVi~~vp~~~~~~~~  100 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEV-AGECDVIFSLVTAQAALEVA  100 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHH-HHHCSEEEECSCTTTHHHHH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHH-HhcCCEEEEecCchhHHHHH
Confidence            356899999999999999999999999 99999997  33 455667799888899886 48999999999999988888


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-C--CCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-E--EMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~--~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (275)
                      .++ +.  ++++++++|++|++....+.+.+.+. .  +..|+. +|++|+...   ..+...++++.   +++  ++++
T Consensus       101 ~~l~~~--l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd-~pv~g~~~~---~~g~l~i~vgg---~~~--~~~~  169 (312)
T 3qsg_A          101 QQAGPH--LCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA-VAVMSAVKP---HGHRVPLVVDG---DGA--RRFQ  169 (312)
T ss_dssp             HHHGGG--CCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE-EEECSCSTT---TGGGSEEEEES---TTH--HHHH
T ss_pred             HhhHhh--cCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe-ccccCCchh---hcCCEEEEecC---ChH--HHHH
Confidence            888 77  88999999999998877666555442 2  567876 588886543   24555566543   333  8899


Q ss_pred             HHHHHcCCeEEEcCh-hHHHHHHHHhhh
Q 023897          161 RIFESEGCKMLEMSC-EEHDKVAAKSQF  187 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~-~~hD~~~a~~~~  187 (275)
                      ++|+.+|.+++++++ -.....+.++++
T Consensus       170 ~ll~~~g~~~~~~g~~~g~a~~~Kl~~n  197 (312)
T 3qsg_A          170 AAFTLYGCRIEVLDGEVGGAALLKMCRS  197 (312)
T ss_dssp             HHHHTTTCEEEECCSSTTHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEcCCCCCHHHHHHHHHH
Confidence            999999999999875 344445555543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.82  E-value=1.3e-19  Score=161.91  Aligned_cols=172  Identities=14%  Similarity=0.149  Sum_probs=132.2

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCC---CEEEEecCchhHH
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADN---DVILISTSILSLS   81 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~a---D~iilavp~~~~~   81 (275)
                      |.++.+|||+|||+|.||..+|..|.+.|++|++|||+++ .+...+.|+..+.+++++ ++++   |+||+|||+..+.
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~-~~~a~~~DvVi~~vp~~~v~   95 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEF-CAKLVKPRVVWLMVPAAVVD   95 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHH-HHHSCSSCEEEECSCGGGHH
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHH-HhcCCCCCEEEEeCCHHHHH
Confidence            4455678999999999999999999999999999999985 455566788888888886 4777   9999999999999


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      +++..+ +.  ++++++|+|+++++......+.+.+ ..+..|+. .|++|...+.  ..|. .+++.   .+++.++++
T Consensus        96 ~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vd-apVsGg~~~a--~~G~-~im~G---G~~~a~~~~  166 (358)
T 4e21_A           96 SMLQRMTPL--LAANDIVIDGGNSHYQDDIRRADQMRAQGITYVD-VGTSGGIFGL--ERGY-CLMIG---GEKQAVERL  166 (358)
T ss_dssp             HHHHHHGGG--CCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEE-EEEECGGGHH--HHCC-EEEEE---SCHHHHHHT
T ss_pred             HHHHHHHhh--CCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEe-CCCCCCHHHH--hcCC-eeeec---CCHHHHHHH
Confidence            999998 77  8899999999998865555554443 34677887 4888776431  2344 55543   267889999


Q ss_pred             HHHHHHcC--------------------CeEEEcChhHHHHHHHHhhh
Q 023897          160 LRIFESEG--------------------CKMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       160 ~~l~~~~G--------------------~~v~~~~~~~hD~~~a~~~~  187 (275)
                      +++|+.+|                    ..++++.+......+.++.+
T Consensus       167 ~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n  214 (358)
T 4e21_A          167 DPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHN  214 (358)
T ss_dssp             HHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHH
T ss_pred             HHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHH
Confidence            99999999                    45777776767777776653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.81  E-value=1.1e-18  Score=153.02  Aligned_cols=158  Identities=13%  Similarity=0.114  Sum_probs=122.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~   85 (275)
                      ...+|||+|||+|.||.++|..|.+.|++|++|||+++ .+...+.|+...++++++ ++++|+||+|+|.+. +.+++.
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~-~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAA-LSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHH-HHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHH-HhcCCEEEEEeCCHHHHHHHhc
Confidence            44568999999999999999999999999999999985 455556688888899886 488999999999874 788886


Q ss_pred             --cCCCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCC-CCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           86 --SLPVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPE-SGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        86 --~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                        .+..  +.++++++|+++++....+.+.+.+ ..+..|+.. |++|.. ..+   .+...+++++   +++.++++++
T Consensus        85 ~~~l~~--~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~~~---~~~~~i~~gg---~~~~~~~~~~  155 (306)
T 3l6d_A           85 MPGVAR--ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRNVG---HRESHSIHTG---DREAFEQHRA  155 (306)
T ss_dssp             STTHHH--HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGGTT---CTTCEEEEEE---CHHHHHHHHH
T ss_pred             ccchhh--ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCccccc---CCceEEEEcC---CHHHHHHHHH
Confidence              4532  5689999999998887766665544 245788874 887653 211   1223455533   6788999999


Q ss_pred             HHHHcCCeEEEc--Ch
Q 023897          162 IFESEGCKMLEM--SC  175 (275)
Q Consensus       162 l~~~~G~~v~~~--~~  175 (275)
                      +|+.+|.+++++  ++
T Consensus       156 ll~~lg~~~~~~~~g~  171 (306)
T 3l6d_A          156 LLEGLAGHTVFLPWDE  171 (306)
T ss_dssp             HHHTTCSEEEECCHHH
T ss_pred             HHHHhcCCEEEecCCC
Confidence            999998899998  64

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.80  E-value=4.9e-18  Score=149.55  Aligned_cols=164  Identities=15%  Similarity=0.076  Sum_probs=125.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCCh-------h-hhHHHHcCceEec-ChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTD-------H-SQLCHRSGISFFS-DKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~-------~-~~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~~~   79 (275)
                      ++|||+|||+|.||+++|..|.+.| ++|++|||++       . .+...+.|+  .+ ++.++ ++++|+||+|||++.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~-~~~aDvVi~avp~~~   99 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAG-IACADVVLSLVVGAA   99 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGG-GGGCSEEEECCCGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHH-HhcCCEEEEecCCHH
Confidence            3479999999999999999999999 9999999996       2 233445677  45 77775 589999999999998


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHH
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      ..+.++++ +.  ++++++++|+++++....+.+.+.+. .+..|+. +|++||...   ..+...++++.   +++  +
T Consensus       100 ~~~~~~~i~~~--l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d-~pv~g~~~a---~~g~l~i~vgg---~~~--~  168 (317)
T 4ezb_A          100 TKAVAASAAPH--LSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE-GAVMARVPP---YAEKVPILVAG---RRA--V  168 (317)
T ss_dssp             HHHHHHHHGGG--CCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE-EEECSCSTT---TGGGSEEEEES---TTH--H
T ss_pred             HHHHHHHHHhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-ccCCCCchh---hcCCEEEEEeC---ChH--H
Confidence            88888888 76  88999999999988877776666553 3567775 599997543   24555566543   333  8


Q ss_pred             HHHHHHHHcCCeEEEcCh-hHHHHHHHHhhh
Q 023897          158 SFLRIFESEGCKMLEMSC-EEHDKVAAKSQF  187 (275)
Q Consensus       158 ~~~~l~~~~G~~v~~~~~-~~hD~~~a~~~~  187 (275)
                      +++++|+.+|.+++++++ -.....+.++.+
T Consensus       169 ~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N  199 (317)
T 4ezb_A          169 EVAERLNALGMNLEAVGETPGQASSLKMIRS  199 (317)
T ss_dssp             HHHHHHHTTTCEEEEEESSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEeCCCcCHHHHHHHHHH
Confidence            899999999999988875 344555555543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.80  E-value=4.6e-19  Score=154.65  Aligned_cols=169  Identities=13%  Similarity=0.137  Sum_probs=125.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH-HHHhh-cC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL-SEVLN-SL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~-~~v~~-~l-   87 (275)
                      .||||||+|.||..||+.|.++||+|++|||+++ .+...+.|.....++.++ ++++|+||+|+|++.. .+++. .+ 
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDA-ITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGG-CCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHH-HhcCCceeeeccchhhHHHHHHHHHH
Confidence            4899999999999999999999999999999985 455566799988999996 5899999999998753 44443 34 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                      +.  +.++++++|++++.....+.+.+.+. .+..|+. -|++|...+.  ..|...++...   +++.+++++.+|+.+
T Consensus        85 ~~--~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld-apVsGg~~~a--~~g~l~im~gG---~~~~~~~~~~~l~~~  156 (297)
T 4gbj_A           85 EK--LGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVG-APIFARPEAV--RAKVGNICLSG---NAGAKERIKPIVENF  156 (297)
T ss_dssp             HH--HCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHH--HHTCCEEEEEE---CHHHHHHHHHHHHTT
T ss_pred             hh--cCCCeEEEECCCCChHHHHHHHHHHHhcCCceec-CCcCCCcccc--ccccceeeccc---chhHHHHHHHHHHHh
Confidence            55  78899999999988777776666543 4678887 5887765321  24554565543   678899999999999


Q ss_pred             CCeEEEcCh-hHHHHHHHHhhhhH
Q 023897          167 GCKMLEMSC-EEHDKVAAKSQFLT  189 (275)
Q Consensus       167 G~~v~~~~~-~~hD~~~a~~~~lp  189 (275)
                      |.+++++.. -.....+.++.++-
T Consensus       157 g~~i~~~g~~~G~g~~~Kl~~N~~  180 (297)
T 4gbj_A          157 VKGVFDFGDDPGAANVIKLAGNFM  180 (297)
T ss_dssp             CSEEEECCSCTTHHHHHHHHHHHH
T ss_pred             hCCeEEecCCccHHHHHHHHHHHH
Confidence            999888763 45566667665443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.80  E-value=1.4e-18  Score=150.60  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=124.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-----------C--------------ceEecChHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-----------G--------------ISFFSDKRAF   63 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-----------g--------------~~~~~~~~~~   63 (275)
                      ..+||+|||+|.||+++|..|+++|++|++||++++ .+.+.+.           |              +..+++++++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            457999999999999999999999999999999985 3322211           2              4667888875


Q ss_pred             hccCCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           64 LEADNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        64 ~~~~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                       ++++|+||+|+|++  ...+++.++ +.  +++++++++.+|...  ...+.+.++...++++.||+.++..      +
T Consensus        83 -~~~aDlVi~av~~~~~~~~~v~~~l~~~--~~~~~il~s~tS~~~--~~~la~~~~~~~~~ig~h~~~p~~~------~  151 (283)
T 4e12_A           83 -VKDADLVIEAVPESLDLKRDIYTKLGEL--APAKTIFATNSSTLL--PSDLVGYTGRGDKFLALHFANHVWV------N  151 (283)
T ss_dssp             -TTTCSEEEECCCSCHHHHHHHHHHHHHH--SCTTCEEEECCSSSC--HHHHHHHHSCGGGEEEEEECSSTTT------S
T ss_pred             -hccCCEEEEeccCcHHHHHHHHHHHHhh--CCCCcEEEECCCCCC--HHHHHhhcCCCcceEEEccCCCccc------C
Confidence             48999999999997  667888888 66  789999998777654  2445555555568999999875432      3


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHH
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA  182 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~  182 (275)
                      ..+.+++...++++.++.++++++.+|.++++++.+.++.+.
T Consensus       152 ~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~  193 (283)
T 4e12_A          152 NTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVL  193 (283)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTH
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEe
Confidence            334555555567889999999999999999998766666543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.77  E-value=4.1e-18  Score=148.55  Aligned_cols=168  Identities=19%  Similarity=0.264  Sum_probs=126.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC-chhHHHHh---hc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS-ILSLSEVL---NS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp-~~~~~~v~---~~   86 (275)
                      |||+|||+|.||..++..|.+.|++|++|||+++ .+...+.|+....+++++ ++++|+||+|+| +..+..++   ++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAI-AEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHH-HhCCCEEEEECCCHHHHHHHHhCcch
Confidence            7999999999999999999999999999999985 444555688888888885 478999999999 55678888   66


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++++++......+.+.+.++ .+..|+.. |+++.....  ..+...++++   .+++..+.++++|+
T Consensus        85 l~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-pv~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~ll~  156 (299)
T 1vpd_A           85 IIEG--AKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGEPKA--IDGTLSVMVG---GDKAIFDKYYDLMK  156 (299)
T ss_dssp             HHHH--CCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHHH--HHTCEEEEEE---SCHHHHHHHHHHHH
T ss_pred             Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEe-cCCCCHhHH--hcCCEEEEeC---CCHHHHHHHHHHHH
Confidence            6 66  78899999998876544555655543 35677765 776543211  1223344443   26778899999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhhhh
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~~l  188 (275)
                      .+|.+++++++..+...+.++.+.
T Consensus       157 ~~g~~~~~~~~~~~~~~~Kl~~n~  180 (299)
T 1vpd_A          157 AMAGSVVHTGDIGAGNVTKLANQV  180 (299)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHH
T ss_pred             HHcCCeEEeCCcCHHHHHHHHHHH
Confidence            999999888777788777766543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.77  E-value=3.3e-18  Score=157.82  Aligned_cols=170  Identities=15%  Similarity=0.144  Sum_probs=127.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc---C--ceEecChHHHhcc---CCCEEEEecCch-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS---G--ISFFSDKRAFLEA---DNDVILISTSIL-   78 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~---g--~~~~~~~~~~~~~---~aD~iilavp~~-   78 (275)
                      +.+|+|||||+|.||++||..|.++|++|++|||+++ .+...+.   |  +..+.++++++ +   ++|+||+|||+. 
T Consensus         2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v-~~l~~aDvVil~Vp~~~   80 (484)
T 4gwg_A            2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMV-SKLKKPRRIILLVKAGQ   80 (484)
T ss_dssp             -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHH-HTBCSSCEEEECSCSSH
T ss_pred             CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHH-hhccCCCEEEEecCChH
Confidence            4568999999999999999999999999999999985 3433332   2  34467888863 4   599999999995 


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHH
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATC  156 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (275)
                      .+.++++++ +.  ++++++|+|+++++......+.+.+ ..+..|++. |++|.+.+.  ..|. .++.++   +++.+
T Consensus        81 ~v~~vl~~l~~~--L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~-pVsGg~~gA--~~G~-~im~GG---~~ea~  151 (484)
T 4gwg_A           81 AVDDFIEKLVPL--LDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS-GVSGGEEGA--RYGP-SLMPGG---NKEAW  151 (484)
T ss_dssp             HHHHHHHHHGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHH--HHCC-EEEEEE---CGGGH
T ss_pred             HHHHHHHHHHHh--cCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC-CccCCHHHH--hcCC-eeecCC---CHHHH
Confidence            788899998 87  8999999999998864444443332 346788874 888765421  2344 555432   67889


Q ss_pred             HHHHHHHHHcCCeE-------EEcChhHHHHHHHHhhhh
Q 023897          157 SSFLRIFESEGCKM-------LEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       157 ~~~~~l~~~~G~~v-------~~~~~~~hD~~~a~~~~l  188 (275)
                      ++++++|+.+|.++       +++.+......+.++++.
T Consensus       152 ~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~  190 (484)
T 4gwg_A          152 PHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNG  190 (484)
T ss_dssp             HHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHH
Confidence            99999999999887       677766666666666533

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.76  E-value=5.2e-17  Score=142.77  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=119.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC-chhHHHHhhc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS-ILSLSEVLNS   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp-~~~~~~v~~~   86 (275)
                      +.+|||+|||+|.||+.+|..|.+.|++|++|||+++ .+...+.|+....++.++ +.++|+||+||| +..+.+++..
T Consensus        28 ~~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~DvVi~av~~~~~~~~v~~~  106 (316)
T 2uyy_A           28 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEV-VSTCDITFACVSDPKAAKDLVLG  106 (316)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHH-HHHCSEEEECCSSHHHHHHHHHS
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHH-HhcCCEEEEeCCCHHHHHHHHcC
Confidence            3458999999999999999999999999999999985 444555788777788775 478999999999 6778888876


Q ss_pred             C----CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897           87 L----PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        87 l----~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      +    +.  +.++++++|+++......+.+.+.++ .+..|++. |++|....  ...+...++++.   +++..+.+++
T Consensus       107 ~~~~~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~-p~~g~~~~--~~~g~~~~~~~g---~~~~~~~v~~  178 (316)
T 2uyy_A          107 PSGVLQG--IRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEA-PVSGNQQL--SNDGMLVILAAG---DRGLYEDCSS  178 (316)
T ss_dssp             TTCGGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESCHHH--HHHTCEEEEEEE---CHHHHHHTHH
T ss_pred             chhHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEc-CccCChhH--HhhCCEEEEeCC---CHHHHHHHHH
Confidence            4    34  67899999998877655566655543 35678775 67664321  112333344332   5678899999


Q ss_pred             HHHHcCCeEEEcCh
Q 023897          162 IFESEGCKMLEMSC  175 (275)
Q Consensus       162 l~~~~G~~v~~~~~  175 (275)
                      +|+.+|.+++++++
T Consensus       179 ll~~~g~~~~~~~~  192 (316)
T 2uyy_A          179 CFQAMGKTSFFLGE  192 (316)
T ss_dssp             HHHHHEEEEEECSS
T ss_pred             HHHHhcCCEEEeCC
Confidence            99999999888864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.76  E-value=2.9e-18  Score=158.82  Aligned_cols=170  Identities=15%  Similarity=0.155  Sum_probs=126.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc----CceEecChHHHhccC---CCEEEEecCc-hh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS----GISFFSDKRAFLEAD---NDVILISTSI-LS   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~----g~~~~~~~~~~~~~~---aD~iilavp~-~~   79 (275)
                      +.+++|+|||+|.||++||..|.++|++|++|||+++ .+...+.    |+..+.+++++ +++   +|+||+|||+ +.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~-v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF-VESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHH-HHTBCSSCEEEECSCSSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHH-HhCCCCCCEEEEECCCHHH
Confidence            4567899999999999999999999999999999985 3333332    78888888886 465   9999999999 57


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHH
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      +.++++++ +.  ++++++|+|+++......+.+.+.++ .+..|++ .|++|.+..  ...|. .+++.   .+++.++
T Consensus        92 v~~vl~~l~~~--l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~-~pv~gg~~~--a~~g~-~i~~g---g~~~~~~  162 (480)
T 2zyd_A           92 TDAAIDSLKPY--LDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG-TGVSGGEEG--ALKGP-SIMPG---GQKEAYE  162 (480)
T ss_dssp             HHHHHHHHGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHH--HHHCC-EEEEE---SCHHHHH
T ss_pred             HHHHHHHHHhh--cCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeC-CccccCHhH--HhcCC-eEEec---CCHHHHH
Confidence            89999998 77  88999999999887655444544443 3567775 487765432  11333 44443   2678899


Q ss_pred             HHHHHHHHcCCe-------EEEcChhHHHHHHHHhhhh
Q 023897          158 SFLRIFESEGCK-------MLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       158 ~~~~l~~~~G~~-------v~~~~~~~hD~~~a~~~~l  188 (275)
                      .++++|+.+|.+       +.++++......+.++.+.
T Consensus       163 ~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~  200 (480)
T 2zyd_A          163 LVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNG  200 (480)
T ss_dssp             HHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHH
Confidence            999999999988       6777776666666655443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.75  E-value=6.9e-18  Score=139.95  Aligned_cols=148  Identities=16%  Similarity=0.211  Sum_probs=110.9

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....+|||+|||+|.||+++|..|.+.|++|++|||+++                 . ++++|+||+|+|++.+.++++
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------~-~~~aD~vi~av~~~~~~~v~~   75 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------A-TTLGEIVIMAVPYPALAALAK   75 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------C-SSCCSEEEECSCHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------H-hccCCEEEEcCCcHHHHHHHH
Confidence            4456678999999999999999999999999999999854                 2 378999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCC-------------CChhHHHHHHhhCCCCCceee-cCCCCCCCCCcCCccc-cc-eeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLS-------------VKEYPRNVLLQVLPEEMDVLC-THPMFGPESGQNGWKD-FA-FVYEKV  148 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s-------------~k~~~~~~l~~~l~~~~~~v~-~hP~~g~~~~~~~~~g-~~-~~~~~~  148 (275)
                      ++ +.  ++ +++++|+++             .+..+.+.+++.++ +.++++ .||+++|..+.+...+ .+ .+++. 
T Consensus        76 ~l~~~--~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~-  150 (209)
T 2raf_A           76 QYATQ--LK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVA-  150 (209)
T ss_dssp             HTHHH--HT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHHHHHSEETTTEECEEEEE-
T ss_pred             HHHHh--cC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhhccccccCCCCCceeEEc-
Confidence            99 76  77 899999876             22233577788776 467888 7888877754332233 22 23332 


Q ss_pred             ecCChHHHHHHHHHHHHcCCeEEEcChhH
Q 023897          149 RIRDEATCSSFLRIFESEGCKMLEMSCEE  177 (275)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~  177 (275)
                       +.+++..+.++++|+.+|++++.+++-+
T Consensus       151 -g~~~~~~~~v~~ll~~~G~~~~~~~~i~  178 (209)
T 2raf_A          151 -GNDDSAKQRFTRALADSPLEVKDAGKLK  178 (209)
T ss_dssp             -ESCHHHHHHHHHHTTTSSCEEEEEESGG
T ss_pred             -CCCHHHHHHHHHHHHHcCCceEeCCCHh
Confidence             3366788999999999999998887533

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.75  E-value=9.6e-17  Score=134.05  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=120.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChhh-h-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDHS-Q-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~~-~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      +++|||+|||+|+||+++|..|.+.|++|++ |+|+++. + .+.+.|+....+..+. +.++|+||+|||++.+.+++.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~-~~~aDvVilavp~~~~~~v~~   99 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKD-ALQADVVILAVPYDSIADIVT   99 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHH-HTTSSEEEEESCGGGHHHHHT
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHH-HhcCCEEEEeCChHHHHHHHH
Confidence            4568999999999999999999999999999 9999853 3 3455676555455554 489999999999999999999


Q ss_pred             cCCCCCCCCCcEEEeCCCCCh------------hHHHHHHhhCCCCCceeecCCCCCCCCC--cCCccccce-eeeeeec
Q 023897           86 SLPVHCLQRRTLIADVLSVKE------------YPRNVLLQVLPEEMDVLCTHPMFGPESG--QNGWKDFAF-VYEKVRI  150 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~k~------------~~~~~l~~~l~~~~~~v~~hP~~g~~~~--~~~~~g~~~-~~~~~~~  150 (275)
                      ++..  + ++++++|+++.-.            ...+.+++.++ +.+++..+|.......  +..+.+.+. ++..  +
T Consensus       100 ~l~~--~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~--g  173 (220)
T 4huj_A          100 QVSD--W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAAVLAADPDKGTGSRVLFLS--G  173 (220)
T ss_dssp             TCSC--C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHHHHTSCSBCSSCEEEEEEE--E
T ss_pred             Hhhc--c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHHHhhhCcccCCCCeeEEEe--C
Confidence            9832  3 4789998874321            15677888886 5677887775433311  111122222 2222  3


Q ss_pred             CChHHHHHHHHHHHHcCCeEEEcChhHHHHH
Q 023897          151 RDEATCSSFLRIFESEGCKMLEMSCEEHDKV  181 (275)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~  181 (275)
                      .+++..+.++++++.+|++++.+.+-...+.
T Consensus       174 ~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~  204 (220)
T 4huj_A          174 NHSDANRQVAELISSLGFAPVDLGTLAASGP  204 (220)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECCSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCeEeeCChhhcch
Confidence            4678899999999999999999986554433

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.74  E-value=1.3e-17  Score=145.08  Aligned_cols=170  Identities=18%  Similarity=0.215  Sum_probs=125.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh---
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN---   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~---   85 (275)
                      +|||+|||+|.||+.++..|.+.|++|++|| +++ .+...+.|+....+++++ +.++|+||+|+|... +..++.   
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~-~~~~D~vi~~vp~~~~~~~v~~~~~   80 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQV-TEFADIIFIMVPDTPQVEDVLFGEH   80 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHH-HHTCSEEEECCSSHHHHHHHHHSTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHH-HhcCCEEEEECCCHHHHHHHHhCch
Confidence            4799999999999999999999999999999 774 444445577777788886 489999999998875 778887   


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      ++ +.  ++++++++++++......+.+.+.++ .+.+|+. .|+.+....  ...+...++++.   +++..+.++++|
T Consensus        81 ~l~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~--a~~g~~~~~~~~---~~~~~~~~~~ll  152 (295)
T 1yb4_A           81 GCAKT--SLQGKTIVDMSSISPIETKRFAQRVNEMGADYLD-APVSGGEIG--AREGTLSIMVGG---EQKVFDRVKPLF  152 (295)
T ss_dssp             SSTTS--CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE-CCEESHHHH--HHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred             hHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHH--HHcCCeEEEECC---CHHHHHHHHHHH
Confidence            67 66  78899999998776544555555443 2456664 366553211  012333444432   677889999999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHhhhhHH
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKSQFLTH  190 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~  190 (275)
                      +.+|.+++++++..++..+.++.+..+
T Consensus       153 ~~~g~~~~~~~~~~~~~~~Kl~~n~~~  179 (295)
T 1yb4_A          153 DILGKNITLVGGNGDGQTCKVANQIIV  179 (295)
T ss_dssp             HHHEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence            999999888877788888777765543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.74  E-value=4.1e-17  Score=141.59  Aligned_cols=151  Identities=16%  Similarity=0.148  Sum_probs=114.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-------CceEecChHHHhccCCCEEEEecCchhH-
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-------GISFFSDKRAFLEADNDVILISTSILSL-   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-------g~~~~~~~~~~~~~~aD~iilavp~~~~-   80 (275)
                      ..+||+|||+|.||++||..|+ +|++|++||++++ .+.+.+.       +++.++++++ + ++||+||.|+|.+.. 
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~-~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-V-KDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-G-GGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-H-cCCCEEEEcCcCCHHH
Confidence            4579999999999999999999 9999999999985 4545444       6777788876 3 899999999999752 


Q ss_pred             -HHHhhcCCCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHH
Q 023897           81 -SEVLNSLPVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        81 -~~v~~~l~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                       ..++.++..  + ++++++ +++|.+.   ..+.+.+....++++.||+.++..      +..+.++++..++++.++.
T Consensus        88 k~~l~~~l~~--~-~~~IlasntSti~~---~~~a~~~~~~~r~~G~Hf~~Pv~~------~~lveiv~g~~t~~~~~~~  155 (293)
T 1zej_A           88 KVEVLREVER--L-TNAPLCSNTSVISV---DDIAERLDSPSRFLGVHWMNPPHV------MPLVEIVISRFTDSKTVAF  155 (293)
T ss_dssp             HHHHHHHHHT--T-CCSCEEECCSSSCH---HHHHTTSSCGGGEEEEEECSSTTT------CCEEEEEECTTCCHHHHHH
T ss_pred             HHHHHHHHhc--C-CCCEEEEECCCcCH---HHHHHHhhcccceEeEEecCcccc------CCEEEEECCCCCCHHHHHH
Confidence             455566733  6 888886 5555543   345554444457999999884432      3345555554458899999


Q ss_pred             HHHHHHHcCCeEEEcCh
Q 023897          159 FLRIFESEGCKMLEMSC  175 (275)
Q Consensus       159 ~~~l~~~~G~~v~~~~~  175 (275)
                      +.++++.+|.+++++.+
T Consensus       156 ~~~l~~~lGk~~v~v~d  172 (293)
T 1zej_A          156 VEGFLRELGKEVVVCKG  172 (293)
T ss_dssp             HHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHcCCeEEEecc
Confidence            99999999999888863

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.74  E-value=9.5e-17  Score=140.30  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=114.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc------------------CceEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS------------------GISFFSD   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~------------------g~~~~~~   59 (275)
                      .++||+|||+|.||+++|..|+++|++|++||++++ .+.+           .+.                  ++..+++
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            457899999999999999999999999999999974 2221           112                  2456778


Q ss_pred             hHHHhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC
Q 023897           60 KRAFLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN  136 (275)
Q Consensus        60 ~~~~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~  136 (275)
                      ++++ ++++|+||+|||.+.  ..+++.++ +.  +++++++++.+|...  ...+.+.++...++++.||+.++..   
T Consensus        94 ~~~~-~~~aD~Vi~avp~~~~~~~~v~~~l~~~--~~~~~iv~s~ts~i~--~~~l~~~~~~~~~~~g~h~~~P~~~---  165 (302)
T 1f0y_A           94 AASV-VHSTDLVVEAIVENLKVKNELFKRLDKF--AAEHTIFASNTSSLQ--ITSIANATTRQDRFAGLHFFNPVPV---  165 (302)
T ss_dssp             HHHH-TTSCSEEEECCCSCHHHHHHHHHHHTTT--SCTTCEEEECCSSSC--HHHHHTTSSCGGGEEEEEECSSTTT---
T ss_pred             HHHh-hcCCCEEEEcCcCcHHHHHHHHHHHHhh--CCCCeEEEECCCCCC--HHHHHHhcCCcccEEEEecCCCccc---
Confidence            8765 489999999999864  46777888 66  788888886655432  3456666654457999999875432   


Q ss_pred             CccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          137 GWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       137 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                         +....+++....+++..+.+.++++.+|..++++.
T Consensus       166 ---~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~  200 (302)
T 1f0y_A          166 ---MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK  200 (302)
T ss_dssp             ---CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ---CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence               22233444444578899999999999998887764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.3e-17  Score=154.99  Aligned_cols=165  Identities=16%  Similarity=0.157  Sum_probs=124.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cCceEecChHHHhccC---CCEEEEecCc-hhHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SGISFFSDKRAFLEAD---NDVILISTSI-LSLS   81 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g~~~~~~~~~~~~~~---aD~iilavp~-~~~~   81 (275)
                      .+|+|||+|.||++||..|.++|++|++|||+++ .+...+     .|+..+.+++++ ++.   +|+||+|||+ ..+.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~-v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDF-ISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHH-HHTSCSSCEEEECCCSSHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHH-HhcCCCCCEEEEEcCChHHHH
Confidence            5899999999999999999999999999999985 343333     477777888886 355   9999999999 5889


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      ++++++ +.  ++++++|+|+++......+.+.+.+. .+..|++ .|++|.+.+.  ..|. .++...   +++.++.+
T Consensus        90 ~vl~~l~~~--l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~-~pVsgg~~~a--~~G~-~im~gg---~~e~~~~v  160 (497)
T 2p4q_A           90 ALINQIVPL--LEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVG-SGVSGGEEGA--RYGP-SLMPGG---SEEAWPHI  160 (497)
T ss_dssp             HHHHHHGGG--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHH--HHCC-EEEEEE---CGGGHHHH
T ss_pred             HHHHHHHHh--CCCCCEEEECCCCChhHHHHHHHHHHHcCCceeC-CCcccChhHh--hcCC-eEEecC---CHHHHHHH
Confidence            999988 77  88999999999887655454544442 3567775 4777654321  1333 444432   67789999


Q ss_pred             HHHHHHcCCe------EEEcChhHHHHHHHHhh
Q 023897          160 LRIFESEGCK------MLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       160 ~~l~~~~G~~------v~~~~~~~hD~~~a~~~  186 (275)
                      +++|+.+|.+      +.++++......+.++.
T Consensus       161 ~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~  193 (497)
T 2p4q_A          161 KNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVH  193 (497)
T ss_dssp             HHHHHHHSCEETTEESCCCCEETTHHHHHHHHH
T ss_pred             HHHHHHhcCccCCCCceEEECCccHHHHHHHHH
Confidence            9999999988      66777666665655554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.73  E-value=6.9e-17  Score=141.37  Aligned_cols=168  Identities=14%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe------------cChHHHhcc---CCCEEEE
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF------------SDKRAFLEA---DNDVILI   73 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~------------~~~~~~~~~---~aD~iil   73 (275)
                      .+|||+|||+|.||+++|..|.++|++|++|+|+++ .+...+.|+...            .+..++ .+   ++|+||+
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   80 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEI-DHQNEQVDLIIA   80 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGC-CTTSCCCSEEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhh-cccCCCCCEEEE
Confidence            357999999999999999999999999999999985 343344454322            133332 23   8999999


Q ss_pred             ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc-----CCccccceeeee
Q 023897           74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ-----NGWKDFAFVYEK  147 (275)
Q Consensus        74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~-----~~~~g~~~~~~~  147 (275)
                      |||++.+.++++++ +.  ++++++++++.+.-. ..+.+.+.++. .+++++++..+....+     ....|...+. .
T Consensus        81 ~v~~~~~~~v~~~l~~~--l~~~~~iv~~~~g~~-~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~-~  155 (316)
T 2ew2_A           81 LTKAQQLDAMFKAIQPM--ITEKTYVLCLLNGLG-HEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGDGEIELE-N  155 (316)
T ss_dssp             CSCHHHHHHHHHHHGGG--CCTTCEEEECCSSSC-THHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSCCCEEEE-E
T ss_pred             EeccccHHHHHHHHHHh--cCCCCEEEEecCCCC-cHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecCCcEEEe-e
Confidence            99999999999998 77  888999998864322 34567776653 3677666654433211     1223444432 2


Q ss_pred             eecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          148 VRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                      ..+.+++..+.++++|+..|.++++.+.-.......
T Consensus       156 ~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~K  191 (316)
T 2ew2_A          156 IDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRK  191 (316)
T ss_dssp             SSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHH
Confidence            223356778999999999999888876444444443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.73  E-value=7.4e-18  Score=146.08  Aligned_cols=164  Identities=19%  Similarity=0.116  Sum_probs=120.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-   87 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-   87 (275)
                      ||||+|||+|.||..++..|.+ |++|++|||+++ .+...+.|+...+ ++++ +.++|+||+|||... +.++++++ 
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~D~vi~~v~~~~~~~~v~~~l~   77 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLER-VAEARVIFTCLPTTREVYEVAEALY   77 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGG-GGGCSEEEECCSSHHHHHHHHHHHT
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHH-HhCCCEEEEeCCChHHHHHHHHHHH
Confidence            3689999999999999999999 999999999985 3434444666555 6664 478999999999775 78888887 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE  166 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  166 (275)
                      +.  ++++++++++++......+.+.+.++. +..|++. |++++....  ..+...++++   .+++..+.++++| .+
T Consensus        78 ~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~--~~g~~~~~~~---~~~~~~~~~~~ll-~~  148 (289)
T 2cvz_A           78 PY--LREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGA--EAGTLTVMLG---GPEEAVERVRPFL-AY  148 (289)
T ss_dssp             TT--CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHH--HHTCEEEEEE---SCHHHHHHHGGGC-TT
T ss_pred             hh--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHH--hhCCeEEEEC---CCHHHHHHHHHHH-hh
Confidence            66  788999999887766555666665543 5677775 876544211  1344344443   2677889999999 99


Q ss_pred             CCeEEEcChhHHHHHHHHhh
Q 023897          167 GCKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       167 G~~v~~~~~~~hD~~~a~~~  186 (275)
                      |.+++++++..+...+.++.
T Consensus       149 g~~~~~~~~~~~~~~~k~~~  168 (289)
T 2cvz_A          149 AKKVVHVGPVGAGHAVKAIN  168 (289)
T ss_dssp             EEEEEEEESTTHHHHHHHHH
T ss_pred             cCCeEEcCCCcHHHHHHHHH
Confidence            98888877666665555554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.73  E-value=2.9e-17  Score=143.31  Aligned_cols=169  Identities=18%  Similarity=0.247  Sum_probs=124.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh--
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN--   85 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~--   85 (275)
                      .+|||+|||+|.||..++..|.+.|++|++|||+++ .+...+.|+....+++++ +.++|+||+|+|.. .+..++.  
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~D~vi~~vp~~~~~~~v~~~~   81 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKV-AAASDIIFTSLPNAGIVETVMNGP   81 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHHST
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHH-HhCCCEEEEECCCHHHHHHHHcCc
Confidence            357999999999999999999999999999999985 344445588877888886 47899999999754 5778885  


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHH
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRI  162 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  162 (275)
                       ++ +.  ++++++++++++......+.+.+.++ .+.+|+. +|+++....  ...+...++++.   +++.++.++++
T Consensus        82 ~~l~~~--l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~--a~~g~~~~~~~g---~~~~~~~v~~l  153 (301)
T 3cky_A           82 GGVLSA--CKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKG--AEAGTLTIMVGA---SEAVFEKIQPV  153 (301)
T ss_dssp             TCHHHH--SCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHH--HHHTCEEEEEES---CHHHHHHHHHH
T ss_pred             chHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHH--HHcCCeEEEECC---CHHHHHHHHHH
Confidence             66 65  78899999998876544455555443 3567775 577654321  012333444432   67788999999


Q ss_pred             HHHcCCeEEEcChhHHHHHHHHhhh
Q 023897          163 FESEGCKMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       163 ~~~~G~~v~~~~~~~hD~~~a~~~~  187 (275)
                      |+.+|.+++++++..+...+.++.+
T Consensus       154 l~~~g~~~~~~~~~g~~~~~Kl~~N  178 (301)
T 3cky_A          154 LSVIGKDIYHVGDTGAGDAVKIVNN  178 (301)
T ss_dssp             HHHHEEEEEEEESTTHHHHHHHHHH
T ss_pred             HHHhcCCEEEeCCCCHHHHHHHHHH
Confidence            9999999888877777777666543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.72  E-value=4.4e-17  Score=147.93  Aligned_cols=189  Identities=14%  Similarity=0.145  Sum_probs=135.7

Q ss_pred             CCC-CeEEEEcCChHHHHHHHHHHHC------CCeEEEEcCCh-h-hhHHHHcCceE----ecChHHHhccCCCEEEEec
Q 023897            9 SST-LKIGIIGFGPFGQFLAKTMIKQ------GHILRATSRTD-H-SQLCHRSGISF----FSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~-~~I~IIG~G~mG~sla~~L~~~------g~~V~~~dr~~-~-~~~a~~~g~~~----~~~~~~~~~~~aD~iilav   75 (275)
                      ... +||+|||+|+||.++|+.|++.      |++|++.+++. . .+.+.+.|+..    ..++.++ ++++|+||+++
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEA-a~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWET-VSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHH-HHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHH-HhcCCEEEECC
Confidence            455 8999999999999999999999      99988776654 3 45677788764    2567776 58999999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHh---hCCCCCceeecCCCCCCCC-------C-cCCccccce
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQ---VLPEEMDVLCTHPMFGPES-------G-QNGWKDFAF  143 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~---~l~~~~~~v~~hP~~g~~~-------~-~~~~~g~~~  143 (275)
                      |+....+++.++ +.  +++|++|+...+..   +..+++   .++.+..++..||+.+...       + ...+.|.+.
T Consensus       130 P~~~~~eVl~eI~p~--LK~GaILs~AaGf~---I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~  204 (525)
T 3fr7_A          130 SDAAQADNYEKIFSH--MKPNSILGLSHGFL---LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINS  204 (525)
T ss_dssp             CHHHHHHHHHHHHHH--SCTTCEEEESSSHH---HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCE
T ss_pred             ChHHHHHHHHHHHHh--cCCCCeEEEeCCCC---HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccE
Confidence            999888899988 87  89999988777642   334443   4566788999999765543       1 012357776


Q ss_pred             eeeeeecCChHHHHHHHHHHHHcCCe-EEEcChh---HHHHH---HHHhhhhHHHH---HHHHhhccccc
Q 023897          144 VYEKVRIRDEATCSSFLRIFESEGCK-MLEMSCE---EHDKV---AAKSQFLTHTI---GRVLSELEIQS  203 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~G~~-v~~~~~~---~hD~~---~a~~~~lp~~~---a~~l~~~~~~~  203 (275)
                      +++.....+++..+.+..+++.+|.. ++..+..   +-|.+   +++++.+|.++   +.++++.|+++
T Consensus       205 liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~p  274 (525)
T 3fr7_A          205 SFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDE  274 (525)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCH
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCH
Confidence            66654334567889999999999975 3344433   22344   34567888754   34556667763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.72  E-value=2.4e-16  Score=144.26  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=117.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---------hHHHHcC-------------ceEecChHHHhccC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---------QLCHRSG-------------ISFFSDKRAFLEAD   67 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---------~~a~~~g-------------~~~~~~~~~~~~~~   67 (275)
                      ..+||+|||+|.||++||..|+++|++|++||++++.         ..+.+.|             ++.+++++.  +++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~a--l~~  130 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHK--LSN  130 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGG--CTT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHH--Hcc
Confidence            4579999999999999999999999999999999851         1122233             346778764  489


Q ss_pred             CCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897           68 NDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV  144 (275)
Q Consensus        68 aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~  144 (275)
                      ||+||.|||.+  ...+++.++ +.  +++++++++.+|+..  ...+.+.++...+|++.||+.++..      ...+.
T Consensus       131 aDlVIeAVpe~~~vk~~v~~~l~~~--~~~~aIlasnTSsl~--i~~ia~~~~~p~r~iG~HffnPv~~------m~LvE  200 (460)
T 3k6j_A          131 CDLIVESVIEDMKLKKELFANLENI--CKSTCIFGTNTSSLD--LNEISSVLRDPSNLVGIHFFNPANV------IRLVE  200 (460)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--SCTTCEEEECCSSSC--HHHHHTTSSSGGGEEEEECCSSTTT------CCEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhh--CCCCCEEEecCCChh--HHHHHHhccCCcceEEEEecchhhh------CCEEE
Confidence            99999999975  345788888 77  899999987766533  3566766655568999999886653      22344


Q ss_pred             eeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          145 YEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ++++..++++.++.+.++++.+|..++++.
T Consensus       201 Iv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~  230 (460)
T 3k6j_A          201 IIYGSHTSSQAIATAFQACESIKKLPVLVG  230 (460)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred             EEeCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence            454444588999999999999999998886

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.72  E-value=8.5e-17  Score=136.54  Aligned_cols=183  Identities=14%  Similarity=0.134  Sum_probs=123.6

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---------------h-HHHHcCceEecChHHHhccCCCE
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---------------Q-LCHRSGISFFSDKRAFLEADNDV   70 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---------------~-~a~~~g~~~~~~~~~~~~~~aD~   70 (275)
                      .....+||+|||+|.||+++|..|.++|++|++|||+++.               . .+.+.+.....++.++ ++++|+
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~aDv   93 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADV-AAGAEL   93 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHH-HHHCSE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHH-HhcCCE
Confidence            4566789999999999999999999999999999999853               1 1222344555677775 489999


Q ss_pred             EEEecCchhHHHHhhcC--CCCCCCCCcEEEeCCCC---------------ChhHHHHHHhhCCCCCceeecCCCCCCC-
Q 023897           71 ILISTSILSLSEVLNSL--PVHCLQRRTLIADVLSV---------------KEYPRNVLLQVLPEEMDVLCTHPMFGPE-  132 (275)
Q Consensus        71 iilavp~~~~~~v~~~l--~~~~l~~~~iv~d~~s~---------------k~~~~~~l~~~l~~~~~~v~~hP~~g~~-  132 (275)
                      ||+|||++.+.+++.++  +.  + ++++++|+++.               .....+.+++.++ +.+++...|..... 
T Consensus        94 Vilavp~~~~~~~~~~i~~~~--l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~a~v  169 (245)
T 3dtt_A           94 VVNATEGASSIAALTAAGAEN--L-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLNTMNASL  169 (245)
T ss_dssp             EEECSCGGGHHHHHHHHCHHH--H-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECSTTSCHHH
T ss_pred             EEEccCcHHHHHHHHHhhhhh--c-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeecccCHHH
Confidence            99999999988888776  33  4 78999998831               1235577888876 36777666543221 


Q ss_pred             CCcC-Cc-cccceeeeeeecCChHHHHHHHHHHHHcCCe-EEEcChhHHHHHHHHhhhhHHHHHHHH
Q 023897          133 SGQN-GW-KDFAFVYEKVRIRDEATCSSFLRIFESEGCK-MLEMSCEEHDKVAAKSQFLTHTIGRVL  196 (275)
Q Consensus       133 ~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~-v~~~~~~~hD~~~a~~~~lp~~~a~~l  196 (275)
                      .++. .. .+...+++.  +.+++..+.++++|+.+|++ ++.+.+-.....+..+..+-..++.++
T Consensus       170 ~~~~~~a~~g~~~~~v~--g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~~~  234 (245)
T 3dtt_A          170 MVDPGRAAGGDHSVFVS--GNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGAL  234 (245)
T ss_dssp             HHCGGGTGGGCCCEEEE--CSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHHHH
T ss_pred             hcCccccCCCCeeEEEE--CCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHHHc
Confidence            1111 11 233334432  23678899999999999985 577776665666666654443344333

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.71  E-value=1.1e-16  Score=148.09  Aligned_cols=168  Identities=15%  Similarity=0.157  Sum_probs=124.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-Hc---CceEecChHHHhccC---CCEEEEecCc-hhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-RS---GISFFSDKRAFLEAD---NDVILISTSI-LSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-~~---g~~~~~~~~~~~~~~---aD~iilavp~-~~~~   81 (275)
                      +++|+|||+|.||+.+|..|.++|++|.+|||+++ .+... +.   |+..+.+++++ +..   +|+||+|||+ ..+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~-v~~l~~aDvVilavp~~~~v~   83 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF-VGSLEKPRRIMLMVQAGAATD   83 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHH-HHTBCSSCEEEECCCTTHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHH-HhhccCCCEEEEEccCchHHH
Confidence            57899999999999999999999999999999985 33332 32   77777888886 355   9999999999 4788


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      ++++++ +.  ++++++|+|+++......+.+.+.++ .+..|++ .|++|.+..  ...|. .++..  + +++.++.+
T Consensus        84 ~vl~~l~~~--l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~--a~~g~-~i~~g--g-~~~~~~~v  154 (474)
T 2iz1_A           84 ATIKSLLPL--LDIGDILIDGGNTHFPDTMRRNAELADSGINFIG-TGVSGGEKG--ALLGP-SMMPG--G-QKEAYDLV  154 (474)
T ss_dssp             HHHHHHGGG--CCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE-EEECSHHHH--HHHCC-CEEEE--E-CHHHHHHH
T ss_pred             HHHHHHHhh--CCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC-CCCCCChhh--hccCC-eEEec--C-CHHHHHHH
Confidence            999888 77  88899999998877555555666654 3567775 587765431  11233 44433  2 67889999


Q ss_pred             HHHHHHcCCe--------EEEcChhHHHHHHHHhhhh
Q 023897          160 LRIFESEGCK--------MLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       160 ~~l~~~~G~~--------v~~~~~~~hD~~~a~~~~l  188 (275)
                      +++|+.+|.+        +.++++......+.++.+.
T Consensus       155 ~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~  191 (474)
T 2iz1_A          155 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNG  191 (474)
T ss_dssp             HHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhH
Confidence            9999999987        4666665555555555433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.70  E-value=1.8e-16  Score=146.66  Aligned_cols=152  Identities=14%  Similarity=0.097  Sum_probs=116.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----------cC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----------SG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----------~g-------------~~~~~~~~~~~   64 (275)
                      ..+||+|||+|.||+++|..|+++|++|++||++++ .+.+.+           .|             ++.+++++.  
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA--   81 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG--
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH--
Confidence            457999999999999999999999999999999985 332211           22             345677764  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEe-CCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIAD-VLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d-~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                      +++||+||+|||++.  ..+++.++ +.  +++++++++ ++|++.   ..+.+.++...++++.||+.++...      
T Consensus        82 ~~~aDlVIeAVpe~~~vk~~v~~~l~~~--~~~~~IlasntSti~i---~~ia~~~~~p~~~ig~hf~~Pa~v~------  150 (483)
T 3mog_A           82 LAAADLVIEAASERLEVKKALFAQLAEV--CPPQTLLTTNTSSISI---TAIAAEIKNPERVAGLHFFNPAPVM------  150 (483)
T ss_dssp             GGGCSEEEECCCCCHHHHHHHHHHHHHH--SCTTCEEEECCSSSCH---HHHTTTSSSGGGEEEEEECSSTTTC------
T ss_pred             hcCCCEEEEcCCCcHHHHHHHHHHHHHh--hccCcEEEecCCCCCH---HHHHHHccCccceEEeeecChhhhC------
Confidence            389999999999973  46788888 66  888999854 554432   4566666555689999998877642      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      ..+.+++...++++.++.+.++++.+|..++++.
T Consensus       151 ~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~  184 (483)
T 3mog_A          151 KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH  184 (483)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence            2345555555688899999999999999888875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.70  E-value=1e-16  Score=144.26  Aligned_cols=210  Identities=14%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-------CeEEEEcCChh-----hhH-HHH--------------cCceEecChHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-------HILRATSRTDH-----SQL-CHR--------------SGISFFSDKRAF   63 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-------~~V~~~dr~~~-----~~~-a~~--------------~g~~~~~~~~~~   63 (275)
                      +|||+|||+|.||+++|..|.++|       ++|++|+|+++     ... ..+              .++..+++++++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            468999999999999999999999       99999999875     321 111              134566777775


Q ss_pred             hccCCCEEEEecCchhHHHHhhcC-C----CCCCCCCcEEEeCCCC-Ch------hHHHHHHhhCCCCCceeecCCCCCC
Q 023897           64 LEADNDVILISTSILSLSEVLNSL-P----VHCLQRRTLIADVLSV-KE------YPRNVLLQVLPEEMDVLCTHPMFGP  131 (275)
Q Consensus        64 ~~~~aD~iilavp~~~~~~v~~~l-~----~~~l~~~~iv~d~~s~-k~------~~~~~l~~~l~~~~~~v~~hP~~g~  131 (275)
                       +.++|+||+|||++.+.+++.++ +    .  ++++++++++++. ..      .+.+.+.+.++.. ..+..    ||
T Consensus       101 -~~~aDvVilav~~~~~~~vl~~i~~~~~~~--l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~----gp  172 (375)
T 1yj8_A          101 -INDADLLIFIVPCQYLESVLASIKESESIK--IASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CSALS----GA  172 (375)
T ss_dssp             -HTTCSEEEECCCHHHHHHHHHHHTC---CC--CCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EEEEE----CS
T ss_pred             -HcCCCEEEEcCCHHHHHHHHHHHhhhhhcc--CCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EEEEe----CC
Confidence             48999999999999999999998 7    7  8889999988732 21      2334445444311 12222    33


Q ss_pred             CCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc--cccc-CcccC
Q 023897          132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL--EIQS-TSMNT  208 (275)
Q Consensus       132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~--~~~~-~~l~~  208 (275)
                      ....+...+.+...+.. +.+++..+.++++|+..|++++..+.-......+++-+..+.-+.++...  +.+. ..+..
T Consensus       173 ~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~  251 (375)
T 1yj8_A          173 NIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIR  251 (375)
T ss_dssp             CCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             chHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Confidence            33222223444443322 23677889999999999999888764444344333322221111111111  2111 33556


Q ss_pred             cchHHHHHHhhcCC-CCChhhH
Q 023897          209 KGFETLIRLKESSV-NDSFDLF  229 (275)
Q Consensus       209 ~~~~~~~rl~~~~~-~~~p~~~  229 (275)
                      .++.++.+++...- +-+++.+
T Consensus       252 ~~~~E~~~la~a~G~G~~~~~~  273 (375)
T 1yj8_A          252 NGINEMILFGKVFFQKFNENIL  273 (375)
T ss_dssp             HHHHHHHHHHHHHSSCCCGGGG
T ss_pred             HHHHHHHHHHHHhccCCCcchh
Confidence            78888888887652 2445544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.70  E-value=4.5e-16  Score=134.37  Aligned_cols=162  Identities=16%  Similarity=0.170  Sum_probs=104.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeE-EEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHIL-RATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V-~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      +|||+|||+|+||++++..|.+. ++| .+|||+++ .+ .+.+.|. .+.+++++ ++++|+||+|||++.+.+++.++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~DvVilav~~~~~~~v~~~l   78 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKH-PELNGVVFVIVPDRYIKTVANHL   78 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCC-CC---CEEECSCTTTHHHHHTTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHH-HhcCCEEEEeCChHHHHHHHHHh
Confidence            47999999999999999999988 999 59999985 33 3345566 56677764 47899999999999999999887


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCC---CCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMF---GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~---g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      .    .++++++|+++....  +.+++     ..+...||+.   |+......+.+.++.++.    +++..+.++++++
T Consensus        79 ~----~~~~ivi~~s~~~~~--~~l~~-----~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~  143 (276)
T 2i76_A           79 N----LGDAVLVHCSGFLSS--EIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEG----DERGLPIVKKIAE  143 (276)
T ss_dssp             C----CSSCCEEECCSSSCG--GGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECC----CTTTHHHHHHHHH
T ss_pred             c----cCCCEEEECCCCCcH--HHHHH-----hhccccchhhhcCCCchhHHHhCCCeEEEEe----ChHHHHHHHHHHH
Confidence            2    467888888743221  12221     1345567754   322111113444444432    4556899999999


Q ss_pred             HcCCeEEEcChhHHHHH---HHHhhhhHH
Q 023897          165 SEGCKMLEMSCEEHDKV---AAKSQFLTH  190 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~---~a~~~~lp~  190 (275)
                      .+|.+++++++++|+.+   ++++++++.
T Consensus       144 ~lG~~~~~v~~~~~~~~~~~~~l~~n~~~  172 (276)
T 2i76_A          144 EISGKYFVIPSEKKKAYHLAAVIASNFPV  172 (276)
T ss_dssp             HHCSCEEECCGGGHHHHHHHHHHHHTTHH
T ss_pred             HhCCCEEEECHHHHHHHHHHHHHHHHHHH
Confidence            99999999998877643   355555553

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.70  E-value=1.5e-16  Score=141.89  Aligned_cols=211  Identities=11%  Similarity=0.090  Sum_probs=132.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC-------CeEEEEcCChh-----hh-HHHH--------------cCceEecChH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG-------HILRATSRTDH-----SQ-LCHR--------------SGISFFSDKR   61 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g-------~~V~~~dr~~~-----~~-~a~~--------------~g~~~~~~~~   61 (275)
                      |.+|||+|||+|.||+++|..|.++|       ++|++|+|+++     .. ...+              .++..+++++
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence            34579999999999999999999999       99999999875     32 1111              1235567777


Q ss_pred             HHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCC-CC------hhHHHHHHhhCCCCCceeecCCCCCCCC
Q 023897           62 AFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVLS-VK------EYPRNVLLQVLPEEMDVLCTHPMFGPES  133 (275)
Q Consensus        62 ~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s-~k------~~~~~~l~~~l~~~~~~v~~hP~~g~~~  133 (275)
                      ++ +.++|+||+|||++.+.++++++ +.  ++++++++++++ +.      ..+.+.+.+.++. ...+..    ||..
T Consensus        86 ~~-~~~aD~Vilav~~~~~~~v~~~i~~~--l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~-~~~v~~----gp~~  157 (354)
T 1x0v_A           86 QA-AEDADILIFVVPHQFIGKICDQLKGH--LKANATGISLIKGVDEGPNGLKLISEVIGERLGI-PMSVLM----GANI  157 (354)
T ss_dssp             HH-HTTCSEEEECCCGGGHHHHHHHHTTC--SCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTC-CEEEEE----CSCC
T ss_pred             HH-HcCCCEEEEeCCHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCCCccccHHHHHHHHcCC-CEEEEE----CCCc
Confidence            75 48999999999999999999999 77  888999998764 32      1223334443331 112222    3333


Q ss_pred             CcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc--cccc-CcccCcc
Q 023897          134 GQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL--EIQS-TSMNTKG  210 (275)
Q Consensus       134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~--~~~~-~~l~~~~  210 (275)
                      ..+...+.+..++.. +.+++..+.++++|+..|.+++..+.-.+.....++-+..+....++...  +.+. ..+...+
T Consensus       158 a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~  236 (354)
T 1x0v_A          158 ASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLG  236 (354)
T ss_dssp             HHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHH
Confidence            222223544433322 23677889999999999999888764444444433322222211112112  2111 2356778


Q ss_pred             hHHHHHHhhcCCCC---ChhhH
Q 023897          211 FETLIRLKESSVND---SFDLF  229 (275)
Q Consensus       211 ~~~~~rl~~~~~~~---~p~~~  229 (275)
                      ++++.+++... +-   +++.+
T Consensus       237 ~~E~~~la~a~-G~~~~~~~~~  257 (354)
T 1x0v_A          237 LMEMIAFAKLF-CSGPVSSATF  257 (354)
T ss_dssp             HHHHHHHHHHH-SSSCCCGGGG
T ss_pred             HHHHHHHHHHh-cCCCCCcccc
Confidence            88888888875 43   55443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.70  E-value=1.2e-16  Score=139.07  Aligned_cols=166  Identities=14%  Similarity=0.172  Sum_probs=117.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHhhcC--
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVLNSL--   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~~~l--   87 (275)
                      |||+|||+|.||++++..|.+.|++|++|||+++ .+...+.|+..+.+++++ +.++|+||+|+|. ..+.+++.++  
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~Dvvi~~vp~~~~~~~v~~~~~~   79 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADV-AEKADRIITMLPTSINAIEAYSGANG   79 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEeCCCHHHHHHHHhCchh
Confidence            5899999999999999999999999999999985 445555688887888885 4789999999964 5678888764  


Q ss_pred             --CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           88 --PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        88 --~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                        +.  ++++++++|++++.....+.+.+.++ .+..|+ .+|+.+.....  ..+...++..   .+++..+.++++|+
T Consensus        80 ~~~~--l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~-~~p~~~g~~~a--~~~~~~~~~~---~~~~~~~~v~~l~~  151 (296)
T 2gf2_A           80 ILKK--VKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGGVGAA--RSGNLTFMVG---GVEDEFAAAQELLG  151 (296)
T ss_dssp             GGGT--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-ECCEESHHHHH--HHTCEEEEEE---SCGGGHHHHHHHHT
T ss_pred             HHhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE-EcCCCCChhHH--hcCcEEEEeC---CCHHHHHHHHHHHH
Confidence              24  67899999988877655555444332 233444 45766543110  0233233332   26778899999999


Q ss_pred             HcCCeEEEcChhHHHHHHHHhh
Q 023897          165 SEGCKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       165 ~~G~~v~~~~~~~hD~~~a~~~  186 (275)
                      .+|.+++.+..........+..
T Consensus       152 ~~g~~~~~~~~~g~~~~~kl~~  173 (296)
T 2gf2_A          152 CMGSNVVYCGAVGTGQAAKICN  173 (296)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHH
T ss_pred             HHcCCeEEeCCccHHHHHHHHH
Confidence            9999888776544444444443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.1e-17  Score=147.06  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=146.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--------eEEEEcCChhh-----hHHHH---------------cCceEecChH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--------ILRATSRTDHS-----QLCHR---------------SGISFFSDKR   61 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--------~V~~~dr~~~~-----~~a~~---------------~g~~~~~~~~   61 (275)
                      +..||+|||+|.||++||..|+++|+        +|.+|.|+++.     ....+               .++..+++++
T Consensus        33 ~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~  112 (391)
T 4fgw_A           33 KPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLI  112 (391)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHH
Confidence            34599999999999999999999874        59999998642     11111               1246788998


Q ss_pred             HHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-CC----C--hhHHHHHHhhCCCCCceeecCCCCCCCC
Q 023897           62 AFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVL-SV----K--EYPRNVLLQVLPEEMDVLCTHPMFGPES  133 (275)
Q Consensus        62 ~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~----k--~~~~~~l~~~l~~~~~~v~~hP~~g~~~  133 (275)
                      ++ ++++|+||++||.+.++++++++ ++  ++++.+++.++ +.    +  ..+.+.+.+.++.  ++   --+.||.+
T Consensus       113 ~a-l~~ad~ii~avPs~~~r~~l~~l~~~--~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~--~~---~vLsGPs~  184 (391)
T 4fgw_A          113 DS-VKDVDIIVFNIPHQFLPRICSQLKGH--VDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI--QC---GALSGANI  184 (391)
T ss_dssp             HH-HTTCSEEEECSCGGGHHHHHHHHTTT--SCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC--EE---EEEECSCC
T ss_pred             HH-HhcCCEEEEECChhhhHHHHHHhccc--cCCCceeEEeccccccccccchhHHHHHHHHhCc--cc---eeccCCch
Confidence            86 58999999999999999999999 77  88888887654 11    1  1234555555432  22   12578888


Q ss_pred             CcCCccccceeeeeeec--------CChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-ccc
Q 023897          134 GQNGWKDFAFVYEKVRI--------RDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEI  201 (275)
Q Consensus       134 ~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~  201 (275)
                      +.|...+.|+.++-...        .++...+.++++|..-.+++|..+    |.+...+ +.+++++|.+..  + +|+
T Consensus       185 A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~----DviGvElgGAlKNViAIAaGi~dGlg~  260 (391)
T 4fgw_A          185 ATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIE----DVAGISICGALKNVVALGCGFVEGLGW  260 (391)
T ss_dssp             HHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEES----CHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeC----CccceehHHHHHHHHHHHHHHHhcCCC
Confidence            77777787775553311        012235778999999999999987    8887766 599999876554  3 333


Q ss_pred             c--c-CcccCcchHHHHHHhhcCC--CCChhhH
Q 023897          202 Q--S-TSMNTKGFETLIRLKESSV--NDSFDLF  229 (275)
Q Consensus       202 ~--~-~~l~~~~~~~~~rl~~~~~--~~~p~~~  229 (275)
                      .  . ..|.++|+.+|.|++....  +.+|.+|
T Consensus       261 G~NakAALitrGl~Em~rlg~al~~~g~~~tt~  293 (391)
T 4fgw_A          261 GNNASAAIQRVGLGEIIRFGQMFFPESREETYY  293 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcccCCceee
Confidence            2  2 5689999999999987641  3345444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.69  E-value=8.5e-17  Score=149.22  Aligned_cols=168  Identities=14%  Similarity=0.106  Sum_probs=122.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cCceEecChHHHhc--cCCCEEEEecCch-hHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SGISFFSDKRAFLE--ADNDVILISTSIL-SLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g~~~~~~~~~~~~--~~aD~iilavp~~-~~~   81 (275)
                      +|||+|||+|.||+.+|..|.++|++|++|||+++ .+...+     .|+..+.++++++.  +++|+||+|||+. .+.
T Consensus         2 ~m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            37899999999999999999999999999999985 343333     57777788888531  3899999999995 789


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF  159 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (275)
                      ++++++ +.  ++++++|+|+++........+.+.++ .+..|++ +|++|.+...  ..|. .++...   +++.++.+
T Consensus        82 ~vl~~l~~~--l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~g~~~~a--~~g~-~i~~gg---~~e~~~~v  152 (482)
T 2pgd_A           82 NFIEKLVPL--LDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDGA--RYGP-SLMPGG---NKEAWPHI  152 (482)
T ss_dssp             HHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHH--HHCC-EEEEEE---CTTTHHHH
T ss_pred             HHHHHHHhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeC-CCCCCChhhh--ccCC-eEEeCC---CHHHHHHH
Confidence            999988 77  88899999998776544444444432 3567775 5887665321  1333 344332   56788999


Q ss_pred             HHHHHHcCCeE-------EEcChhHHHHHHHHhhh
Q 023897          160 LRIFESEGCKM-------LEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       160 ~~l~~~~G~~v-------~~~~~~~hD~~~a~~~~  187 (275)
                      +++|+.+|.++       ..+++......+.++.+
T Consensus       153 ~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N  187 (482)
T 2pgd_A          153 KAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHN  187 (482)
T ss_dssp             HHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHH
T ss_pred             HHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHH
Confidence            99999999886       45555555555555543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.68  E-value=8e-17  Score=144.42  Aligned_cols=157  Identities=16%  Similarity=0.179  Sum_probs=106.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--------------CceEecChHHHhccCCCEEEEecCc
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--------------GISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--------------g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      ||+|||+|.||+++|..|.++|++|++|+|+++ .+...+.              ++..+++++++ +.++|+||+|||+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA-YNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH-HTTCSSEEECCCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHH-HcCCCEEEECCCh
Confidence            999999999999999999999999999999984 3332222              24566788775 4899999999999


Q ss_pred             hhHHHHhhc----C-CCCCCCC-CcEEEeCC-CCChh----HHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897           78 LSLSEVLNS----L-PVHCLQR-RTLIADVL-SVKEY----PRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE  146 (275)
Q Consensus        78 ~~~~~v~~~----l-~~~~l~~-~~iv~d~~-s~k~~----~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~  146 (275)
                      +.+.+++.+    + +.  +++ ++++++++ ++...    +.+.+.+.++.....+.    .||....+...+.+..++
T Consensus        96 ~~~~~v~~~~~~gl~~~--l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~----~gp~~~~~~~~g~~~~~~  169 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAY--AKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVL----AGPSFAIEVATGVFTCVS  169 (366)
T ss_dssp             HHHHHHHHHHCHHHHHH--HHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEE----ESSCCHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhHHHHHHh--cCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEE----eCCChHHHHHhCCceEEE
Confidence            999999988    8 66  777 88888877 33221    22333333321101122    233332222234444333


Q ss_pred             eeecCChHHHHHHHHHHHHc--CCeEEEcChhH
Q 023897          147 KVRIRDEATCSSFLRIFESE--GCKMLEMSCEE  177 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~--G~~v~~~~~~~  177 (275)
                      .. +.+++..+.++++|+..  |.+++..+...
T Consensus       170 ~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~  201 (366)
T 1evy_A          170 IA-SADINVARRLQRIMSTGDRSFVCWATTDTV  201 (366)
T ss_dssp             EE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHH
T ss_pred             Ee-cCCHHHHHHHHHHhcCCCCeEEEEEcCCch
Confidence            22 23667889999999999  88887766433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.68  E-value=2.6e-15  Score=131.83  Aligned_cols=166  Identities=14%  Similarity=0.244  Sum_probs=108.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce--------------EecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS--------------FFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~--------------~~~~~~~~~~~~aD~iilavp   76 (275)
                      +|||+|||+|.||+++|..|.++|++|++|+|++ .+...+.|+.              .+++.++ + ..+|+||+|||
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~-~~~D~vilavk   78 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-I-GPMDLVLVGLK   78 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-H-CCCSEEEECCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-c-CCCCEEEEecC
Confidence            3799999999999999999999999999999987 3333344432              2355655 3 78999999999


Q ss_pred             chhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---cccc-ceeeeeeecC
Q 023897           77 ILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDF-AFVYEKVRIR  151 (275)
Q Consensus        77 ~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~-~~~~~~~~~~  151 (275)
                      +..+.++++.+ +.  +.++++|+.+..--. ..+.+.+.++. .+++++.+..+....+++   ..+. .+.+......
T Consensus        79 ~~~~~~~l~~l~~~--l~~~~~iv~l~nGi~-~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~  154 (312)
T 3hn2_A           79 TFANSRYEELIRPL--VEEGTQILTLQNGLG-NEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR  154 (312)
T ss_dssp             GGGGGGHHHHHGGG--CCTTCEEEECCSSSS-HHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred             CCCcHHHHHHHHhh--cCCCCEEEEecCCCC-cHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence            99999999999 77  888888877654322 24567777764 345544332222211111   0111 1222222222


Q ss_pred             ChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          152 DEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       152 ~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                      +.+..+.+.++|+..|.+++..+.-.......
T Consensus       155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~K  186 (312)
T 3hn2_A          155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEK  186 (312)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHH
Confidence            45677899999999999988765444343333

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.67  E-value=1.8e-15  Score=134.13  Aligned_cols=178  Identities=17%  Similarity=0.240  Sum_probs=114.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-------------EecChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-------------FFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-------------~~~~~~~~~~~~aD~iilavp   76 (275)
                      .+|||+|||+|.||+++|..|+++|++|++|+|++..+...+.|+.             .++++++ + .++|+||+|||
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~D~Vilavk   79 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-L-GEQDVVIVAVK   79 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-H-CCCSEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-c-CCCCEEEEeCC
Confidence            3589999999999999999999999999999997544444445542             3456766 3 78999999999


Q ss_pred             chhHHHHhhcC-CCCCCCCCcEEEeCCCCC------------------hhHHHHHHhhCCCCCceeecCCCC-----CCC
Q 023897           77 ILSLSEVLNSL-PVHCLQRRTLIADVLSVK------------------EYPRNVLLQVLPEEMDVLCTHPMF-----GPE  132 (275)
Q Consensus        77 ~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k------------------~~~~~~l~~~l~~~~~~v~~hP~~-----g~~  132 (275)
                      ...+.++++.+ +.  ++++++|+.+.+--                  ....+.+.+.++. .+++++....     +|.
T Consensus        80 ~~~~~~~~~~l~~~--l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~~~a~~~~pg  156 (335)
T 3ghy_A           80 APALESVAAGIAPL--IGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVHLTCATVSPG  156 (335)
T ss_dssp             HHHHHHHHGGGSSS--CCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEECCCEEESSTT
T ss_pred             chhHHHHHHHHHhh--CCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEEEEEEEcCCc
Confidence            99999999999 77  88898888755431                  0112345666653 2444333222     232


Q ss_pred             CCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHH
Q 023897          133 SGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIG  193 (275)
Q Consensus       133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a  193 (275)
                      .......+. +.+......+.+..+.+.++|+..|++++..+.-.......++ +...+.++
T Consensus       157 ~v~~~~~g~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~  217 (335)
T 3ghy_A          157 HIRHGNGRR-LILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVS  217 (335)
T ss_dssp             EEEECSCCE-EEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHH
T ss_pred             EEEECCCCe-EEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHH
Confidence            211111121 2222111224567788999999999998887644444444433 33334443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.67  E-value=8.2e-16  Score=141.26  Aligned_cols=171  Identities=15%  Similarity=0.176  Sum_probs=115.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH--------------------cCceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR--------------------SGISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~--------------------~g~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.||..+|..|+++|++|++||++++. +...+                    .++..+++++++ ++++|+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea-~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQA-VPEADI   81 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHH-GGGCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHH-HhcCCE
Confidence            79999999999999999999999999999999853 22211                    124677888886 489999


Q ss_pred             EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC---Cc-eeecCCCCCCCCCc
Q 023897           71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE---MD-VLCTHPMFGPESGQ  135 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~---~~-~v~~hP~~g~~~~~  135 (275)
                      ||+|||.+          .+.++++.+ +.  +++++++++.+++.....+.+.+.+...   .. .+..+..++|+...
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~--l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~  159 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRA--MSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK  159 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHH--CCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhh--CCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence            99999987          789999998 77  8899999999887765555444332110   00 01112234555443


Q ss_pred             CCcc----cc-ceeeeeeecCChHHHHHHHHHHHHcCC---eEEEcChhHHHHHHHHhhhh
Q 023897          136 NGWK----DF-AFVYEKVRIRDEATCSSFLRIFESEGC---KMLEMSCEEHDKVAAKSQFL  188 (275)
Q Consensus       136 ~~~~----g~-~~~~~~~~~~~~~~~~~~~~l~~~~G~---~v~~~~~~~hD~~~a~~~~l  188 (275)
                      ++..    .. +.++.+.  .+++..+.++++++.++.   .++..+.. -..++.+..+.
T Consensus       160 eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~-~aE~~Kl~~N~  217 (450)
T 3gg2_A          160 EGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIA-SAEMTKYAANA  217 (450)
T ss_dssp             TTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHH-HHHHHHHHHHH
T ss_pred             ccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHH-HHHHHHHHHHH
Confidence            3321    12 2344432  257888999999998875   35555543 34455555433

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.67  E-value=1.4e-15  Score=139.17  Aligned_cols=169  Identities=15%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH--------------------cCceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR--------------------SGISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~--------------------~g~~~~~~~~~~~~~~aD~   70 (275)
                      -+|+|||+|.||..+|..|+++||+|++||++++. +...+                    .++..++++.++ +++||+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea-~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG-VKDADA   87 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH-HTTCSE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH-HhcCCE
Confidence            58999999999999999999999999999999853 22111                    124678898876 489999


Q ss_pred             EEEecCch-----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCCCCCCcCC
Q 023897           71 ILISTSIL-----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFGPESGQNG  137 (275)
Q Consensus        71 iilavp~~-----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g~~~~~~~  137 (275)
                      ||+|||.+           .+.++++.+ +.  +++++++++.+++.....+.+.+.+.. ... ...+-.++|+...++
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~--l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~eG  164 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAEN--LTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLREG  164 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHS--CCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCCTT
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHh--cCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccccc
Confidence            99998765           488999988 77  899999999988776555554443211 000 111122455554433


Q ss_pred             cc----ccc-eeeeeeecCChHHHHHHHHHHHHcCCe---EEEcChhHHHHHHHHhh
Q 023897          138 WK----DFA-FVYEKVRIRDEATCSSFLRIFESEGCK---MLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       138 ~~----g~~-~~~~~~~~~~~~~~~~~~~l~~~~G~~---v~~~~~~~hD~~~a~~~  186 (275)
                      ..    ..+ .++.+.  .+++..+.++++|+.++..   ++.++.-.--.++.+..
T Consensus       165 ~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~  219 (446)
T 4a7p_A          165 AAIEDFKRPDRVVVGT--EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAA  219 (446)
T ss_dssp             SHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHH
T ss_pred             chhhhccCCCEEEEeC--CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHH
Confidence            21    222 444432  2567889999999988753   34443333344555544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.66  E-value=4e-16  Score=144.46  Aligned_cols=166  Identities=17%  Similarity=0.204  Sum_probs=120.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-HHHcC-------ceEecChHHHhcc---CCCEEEEecCch-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-CHRSG-------ISFFSDKRAFLEA---DNDVILISTSIL-   78 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-a~~~g-------~~~~~~~~~~~~~---~aD~iilavp~~-   78 (275)
                      |||+|||+|.||+.+|..|.++|++|++|||+++ .+. ..+.|       +..+.++++++ .   ++|+||+|||+. 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v-~~l~~aDvVilaVp~~~   80 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA-ASLKKPRKALILVQAGA   80 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHH-HHBCSSCEEEECCCCSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHH-hcccCCCEEEEecCChH
Confidence            6899999999999999999999999999999985 332 23335       66677888753 4   499999999995 


Q ss_pred             hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHH
Q 023897           79 SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATC  156 (275)
Q Consensus        79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (275)
                      .+.++++++ +.  ++++++|+|+++......+.+.+.++ .+..|++ .|+.|.+..  ...|. .++...   +++.+
T Consensus        81 ~v~~vl~~l~~~--l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~--a~~g~-~i~~gg---~~~~~  151 (478)
T 1pgj_A           81 ATDSTIEQLKKV--FEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEG--ARKGP-AFFPGG---TLSVW  151 (478)
T ss_dssp             HHHHHHHHHHHH--CCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHH--HHHCC-EEEEEE---CHHHH
T ss_pred             HHHHHHHHHHhh--CCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHH--HhcCC-eEeccC---CHHHH
Confidence            788999888 77  88899999998776544444444443 3566775 477665421  11233 444432   67788


Q ss_pred             HHHHHHHHHcCCe-------EEEcChhHHHHHHHHhhh
Q 023897          157 SSFLRIFESEGCK-------MLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       157 ~~~~~l~~~~G~~-------v~~~~~~~hD~~~a~~~~  187 (275)
                      +.++++|+.+|.+       ++.+++......+.++.+
T Consensus       152 ~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N  189 (478)
T 1pgj_A          152 EEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHN  189 (478)
T ss_dssp             HHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHH
Confidence            9999999999987       566766555555555543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.65  E-value=1.8e-14  Score=130.87  Aligned_cols=220  Identities=14%  Similarity=0.086  Sum_probs=140.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH------------------cCceEecChHHHhccCCC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR------------------SGISFFSDKRAFLEADND   69 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~------------------~g~~~~~~~~~~~~~~aD   69 (275)
                      +.+|||+|||+|.||.++|..|++ |++|++||++++. +...+                  .++..+++++++ ++++|
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea-~~~aD  111 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDA-YRNAD  111 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH-HTTCS
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHH-HhCCC
Confidence            356899999999999999999998 9999999999853 22211                  145778888776 48999


Q ss_pred             EEEEecCch-----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc-C
Q 023897           70 VILISTSIL-----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ-N  136 (275)
Q Consensus        70 ~iilavp~~-----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~-~  136 (275)
                      +||+|||.+           .+.++++.+ +   +++++++++.+++.....+.+.+.+..  ..+...|.++.+... .
T Consensus       112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~---l~~g~iVV~~STv~pgtt~~l~~~l~~--~~v~~sPe~~~~G~A~~  186 (432)
T 3pid_A          112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE---INPNAVMIIKSTIPVGFTRDIKERLGI--DNVIFSPEFLREGRALY  186 (432)
T ss_dssp             EEEECCCCEEETTTTEEECHHHHHHHHHHHH---HCTTSEEEECSCCCTTHHHHHHHHHTC--CCEEECCCCCCTTSHHH
T ss_pred             EEEEeCCCccccccccccHHHHHHHHHHHHh---cCCCcEEEEeCCCChHHHHHHHHHHhh--ccEeecCccCCcchhhh
Confidence            999999986           577777777 4   678999999999888777877776643  234446766554221 0


Q ss_pred             CccccceeeeeeecCChHHHHHHHHHHHH--cC--CeEEEcChhHHHHHHHHhhhhHH-----HHHH--HHh-hccccc-
Q 023897          137 GWKDFAFVYEKVRIRDEATCSSFLRIFES--EG--CKMLEMSCEEHDKVAAKSQFLTH-----TIGR--VLS-ELEIQS-  203 (275)
Q Consensus       137 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~G--~~v~~~~~~~hD~~~a~~~~lp~-----~~a~--~l~-~~~~~~-  203 (275)
                      +....+.++.+.   +++..+.+.++|..  ++  ..++.++... ..++.++.+.-.     ++..  .++ ..|+|. 
T Consensus       187 ~~l~p~rIvvG~---~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~-AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~  262 (432)
T 3pid_A          187 DNLHPSRIVIGE---RSARAERFADLLKEGAIKQDIPTLFTDSTE-AEAIKLFANTYLALRVAYFNELDSYAESQGLNSK  262 (432)
T ss_dssp             HHHSCSCEEESS---CSHHHHHHHHHHHHHCSSSSCCEEECCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             cccCCceEEecC---CHHHHHHHHHHHHhhhccCCCeEEecCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            111222455532   45677888999986  43  3466666543 445555432221     1111  222 234431 


Q ss_pred             -------------CcccCcch--------HHHHHHhhcCCCCChhhHHHHHHHCHHH
Q 023897          204 -------------TSMNTKGF--------ETLIRLKESSVNDSFDLFSGLYIHNRFA  239 (275)
Q Consensus       204 -------------~~l~~~~~--------~~~~rl~~~~~~~~p~~~~~i~~~N~~~  239 (275)
                                   ..+..+||        +|...|.....+-.+.++.....-|..-
T Consensus       263 ~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~~~~~~~~li~~~~~~N~~~  319 (432)
T 3pid_A          263 QIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNIIAAIVDANRTR  319 (432)
T ss_dssp             HHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHHTTTSCCSHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHHhcCCchhHHHHHHHHHHhh
Confidence                         11223333        6766665544344578888888877644

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.64  E-value=4.5e-15  Score=131.50  Aligned_cols=150  Identities=13%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcC-----------ceEecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSG-----------ISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g-----------~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      ..|||+|||+|.||+++|..|.++|++|++|+|+++ .+...+.|           +..++++++ + .++|+||+|||+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~-~~aDvVil~vk~   90 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-I-KKEDILVIAIPV   90 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-C-CTTEEEEECSCG
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-h-cCCCEEEEECCH
Confidence            357999999999999999999999999999999975 33333333           466777777 4 799999999999


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCC-CCCh----hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVL-SVKE----YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRD  152 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~-s~k~----~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~  152 (275)
                      +.+.+++.++.    .++++++++. ++..    .+.+.+.+.++ ....+...|....+    ...|.+..++...  +
T Consensus        91 ~~~~~v~~~l~----~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~----~~~g~~~~~~~g~--~  159 (335)
T 1z82_A           91 QYIREHLLRLP----VKPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEE----VAKKLPTAVTLAG--E  159 (335)
T ss_dssp             GGHHHHHTTCS----SCCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHH----HHTTCCEEEEEEE--T
T ss_pred             HHHHHHHHHhC----cCCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHH----HhCCCceEEEEEe--h
Confidence            99999999872    1678888877 3322    23344444443 11223334433222    1134443333222  2


Q ss_pred             hHHHHHHHHHHHHcCCeEEEcC
Q 023897          153 EATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       153 ~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      +  .+.++++|+..|.+++..+
T Consensus       160 ~--~~~~~~ll~~~g~~~~~~~  179 (335)
T 1z82_A          160 N--SKELQKRISTEYFRVYTCE  179 (335)
T ss_dssp             T--HHHHHHHHCCSSEEEEEES
T ss_pred             h--HHHHHHHhCCCCEEEEecC
Confidence            2  7889999999998887765

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.64  E-value=3.3e-15  Score=127.78  Aligned_cols=158  Identities=11%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcC--Chh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSR--TDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr--~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+|||+|.||+++|..|.+.|++|++|||  +++ .+...+.|+.  ++++++ +.++|+||+|||++...+.+.++ 
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~-~~~aDvvi~~v~~~~~~~~~~~~~   77 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEED-VYSCPVVISAVTPGVALGAARRAG   77 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHH-HHTSSEEEECSCGGGHHHHHHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHH-HhcCCEEEEECCCHHHHHHHHHHH
Confidence            6899999999999999999999999999998  543 3344445776  566675 48999999999998665556667 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG  167 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G  167 (275)
                      +.  +++  +++|++++.....+.+.+.++... |+. +|+.++...  ...+.+ ++++.   +.+  +.+++ |+.+|
T Consensus        78 ~~--~~~--~vi~~s~~~~~~~~~l~~~~~~~g-~~~-~~v~~~~~~--~~~g~~-~~~~g---~~~--~~~~~-l~~~g  142 (264)
T 1i36_A           78 RH--VRG--IYVDINNISPETVRMASSLIEKGG-FVD-AAIMGSVRR--KGADIR-IIASG---RDA--EEFMK-LNRYG  142 (264)
T ss_dssp             TT--CCS--EEEECSCCCHHHHHHHHHHCSSSE-EEE-EEECSCHHH--HGGGCE-EEEES---TTH--HHHHG-GGGGT
T ss_pred             Hh--cCc--EEEEccCCCHHHHHHHHHHHhhCC-eee-eeeeCCccc--cccCCe-EEecC---CcH--HHhhh-HHHcC
Confidence            65  655  889998887666677887776433 665 476654321  113454 44432   233  78888 99999


Q ss_pred             CeEEEcCh-hHHHHHHHHhhh
Q 023897          168 CKMLEMSC-EEHDKVAAKSQF  187 (275)
Q Consensus       168 ~~v~~~~~-~~hD~~~a~~~~  187 (275)
                      .+++.+++ -.....+.++.+
T Consensus       143 ~~~~~~~~~~g~~~~~kl~~n  163 (264)
T 1i36_A          143 LNIEVRGREPGDASAIKMLRS  163 (264)
T ss_dssp             CEEEECSSSTTHHHHHHHHHH
T ss_pred             CeeEECCCCcCHHHHHHHHHH
Confidence            98888875 245555555543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.63  E-value=2.2e-15  Score=125.29  Aligned_cols=163  Identities=16%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      .+|||+|||+|.||++++..|.+.|++|++++|+++ .+...+.|+... +++++ ++++|+||+|+|++...++++ + 
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~-~~~~DvVi~av~~~~~~~v~~-l~  103 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEA-VSSPEVIFVAVFREHYSSLCS-LS  103 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHH-TTSCSEEEECSCGGGSGGGGG-GH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHH-HhCCCEEEECCChHHHHHHHH-HH
Confidence            457999999999999999999999999999999985 333334477665 67675 489999999999987777765 6 


Q ss_pred             CCCCCCCCcEEEeCCCCChhH--------HHHHHhhCCCCCceeec-CCCCCCCCCcCCccccceeeeeeecCChHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYP--------RNVLLQVLPEEMDVLCT-HPMFGPESGQNGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~--------~~~l~~~l~~~~~~v~~-hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                      +.  + ++++++|+++.....        .+.+.+.++ +.++++. +++.+.........+...++..  +.+++..+.
T Consensus       104 ~~--~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~  177 (215)
T 2vns_A          104 DQ--L-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAGPRDGNRQVPIC--GDQPEAKRA  177 (215)
T ss_dssp             HH--H-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTCSCSSCCEEEEE--ESCHHHHHH
T ss_pred             Hh--c-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcccccCCceeEEEe--cCCHHHHHH
Confidence            44  4 788999998766421        233446665 3455543 3333221111111233222221  336788999


Q ss_pred             HHHHHHHcCCeEEEcChhHHHHH
Q 023897          159 FLRIFESEGCKMLEMSCEEHDKV  181 (275)
Q Consensus       159 ~~~l~~~~G~~v~~~~~~~hD~~  181 (275)
                      ++++|+.+|.+++.+++-.....
T Consensus       178 v~~ll~~~G~~~~~~g~~~~~~~  200 (215)
T 2vns_A          178 VSEMALAMGFMPVDMGSLASAWE  200 (215)
T ss_dssp             HHHHHHHTTCEEEECCSGGGHHH
T ss_pred             HHHHHHHcCCceEeecchhhhhH
Confidence            99999999999999986544433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.63  E-value=8.6e-16  Score=135.74  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=108.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcC--Chh-hhHHHHcCc-----------eEec--ChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSR--TDH-SQLCHRSGI-----------SFFS--DKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr--~~~-~~~a~~~g~-----------~~~~--~~~~~~~~~aD~iilav   75 (275)
                      |||+|||+|.||+++|..|.++|++|++|+|  +++ .+...+.|.           ..++  ++.++ +.++|+||+||
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~D~vi~~v   79 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC-LENAEVVLLGV   79 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH-HTTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHH-HhcCCEEEEcC
Confidence            6899999999999999999999999999999  774 333333332           4455  66665 48999999999


Q ss_pred             CchhHHHHhhcCCCCCCCCCcEEEeCC-CC---ChhHHHHHHhhCCC--CCceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           76 SILSLSEVLNSLPVHCLQRRTLIADVL-SV---KEYPRNVLLQVLPE--EMDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        76 p~~~~~~v~~~l~~~~l~~~~iv~d~~-s~---k~~~~~~l~~~l~~--~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      |++.+.+++..+..  ++++++++++. ++   +....+.+.+.++.  +..+ ......+|........+.+..++...
T Consensus        80 ~~~~~~~v~~~i~~--l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~~~~  156 (335)
T 1txg_A           80 STDGVLPVMSRILP--YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVVFSS  156 (335)
T ss_dssp             CGGGHHHHHHHHTT--TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             ChHHHHHHHHHHhc--CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEEEEe
Confidence            99999999988832  67788888886 44   21112233333332  1100 11113444432222234433333222


Q ss_pred             cCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          150 IRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       150 ~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                       .+++..+.++++|+..|.+++..+.-.......
T Consensus       157 -~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k  189 (335)
T 1txg_A          157 -PSESSANKMKEIFETEYFGVEVTTDIIGTEITS  189 (335)
T ss_dssp             -SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHH
T ss_pred             -CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHH
Confidence             357788999999999999888776544444443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.62  E-value=3.8e-15  Score=136.59  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=112.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH-------------------cC-ceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR-------------------SG-ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~-------------------~g-~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.||..+|..|++.|++|++||++++. +...+                   .| +..+++++++ +.++|+
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~-~~~aDv   79 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKA-VLDSDV   79 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH-HHTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHH-hccCCE
Confidence            69999999999999999999999999999999853 22222                   23 5677788775 489999


Q ss_pred             EEEecCchh----------HHHHhhcC-CCCCCCC---CcEEEeCCCCChhH-HHHHHhhCCC--CCce-eecCCCCCCC
Q 023897           71 ILISTSILS----------LSEVLNSL-PVHCLQR---RTLIADVLSVKEYP-RNVLLQVLPE--EMDV-LCTHPMFGPE  132 (275)
Q Consensus        71 iilavp~~~----------~~~v~~~l-~~~~l~~---~~iv~d~~s~k~~~-~~~l~~~l~~--~~~~-v~~hP~~g~~  132 (275)
                      ||+|||...          +.++++++ +.  +++   ++++++.+++.... .+.+.+.+..  +..+ +..+-.++|+
T Consensus        80 viiaVptp~~~~~~~dl~~v~~v~~~i~~~--l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           80 SFICVGTPSKKNGDLDLGYIETVCREIGFA--IREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHH--HTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEEcCCCcccCCCcchHHHHHHHHHHHHH--hcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            999999865          88898888 76  777   89999987776544 4444443321  1111 1111123444


Q ss_pred             CCcCCc-----cccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhh
Q 023897          133 SGQNGW-----KDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       133 ~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~  186 (275)
                      ...++.     ...+.++.+.  .+++..+.++++++.+|..+++.+ -.......++.
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G~--~~~~~~~~~~~l~~~~~~~v~~~~-~~~ae~~Kl~~  213 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIRKT-VEVAEMIKYTC  213 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEEEE-HHHHHHHHHHH
T ss_pred             cccccccchhccCCCEEEEEc--CCHHHHHHHHHHHhccCCCEEcCC-HHHHHHHHHHH
Confidence            332221     1122344332  257788899999999998776644 34444555544

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.62  E-value=6.4e-15  Score=135.93  Aligned_cols=153  Identities=12%  Similarity=0.134  Sum_probs=112.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----------cC-----------ceEecChHHHhcc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----------SG-----------ISFFSDKRAFLEA   66 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----------~g-----------~~~~~~~~~~~~~   66 (275)
                      ..+||+|||+|.||+++|..|+++|++|++||++++ .+.+.+           .|           ..++++++.  +.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~  113 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE--LS  113 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG--GT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH--HC
Confidence            457899999999999999999999999999999984 222111           11           234567754  38


Q ss_pred             CCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccce
Q 023897           67 DNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAF  143 (275)
Q Consensus        67 ~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~  143 (275)
                      +||+||+|||.+.  ..+++.++ +.  +++++++++.++.  .....+.+.+....++++.|++.++..      +..+
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~--~~~~~ii~snTs~--~~~~~la~~~~~~~~~ig~hf~~P~~~------~~lv  183 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSAL--CKPGAFLCTNTSA--LNVDDIASSTDRPQLVIGTHFFSPAHV------MRLL  183 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHH--SCTTCEEEECCSS--SCHHHHHTTSSCGGGEEEEEECSSTTT------CCEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhh--CCCCeEEEeCCCC--cCHHHHHHHhcCCcceEEeecCCCccc------ceeE
Confidence            9999999999864  46777888 66  7889999874432  233466766655568999999743322      2234


Q ss_pred             eeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          144 VYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .++++..++++.++.+.++++.+|..++++.
T Consensus       184 evv~g~~t~~e~~~~~~~l~~~lGk~~v~v~  214 (463)
T 1zcj_A          184 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVG  214 (463)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHTTCEEEEBC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhCCEEEEEC
Confidence            4444445688899999999999999888886

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.61  E-value=1.8e-15  Score=132.60  Aligned_cols=167  Identities=13%  Similarity=0.185  Sum_probs=109.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-----C-CeEEEEcCChh-hhHHHH-cCceEe--------------cChHHHhccC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-----G-HILRATSRTDH-SQLCHR-SGISFF--------------SDKRAFLEAD   67 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-----g-~~V~~~dr~~~-~~~a~~-~g~~~~--------------~~~~~~~~~~   67 (275)
                      .+|||+|||+|.||+++|..|.++     | ++|++|+| ++ .+...+ .|+...              ++.+.  +..
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~   83 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE--VGT   83 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH--HCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccc--cCC
Confidence            347999999999999999999999     9 99999999 53 444444 566443              33433  378


Q ss_pred             CCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC-----Ccccc
Q 023897           68 NDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN-----GWKDF  141 (275)
Q Consensus        68 aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~-----~~~g~  141 (275)
                      +|+||+|||++.+.++++.+ +.  ++++++++++.+... ..+.+.+.++.. +++.+.|..+....++     ...+.
T Consensus        84 ~D~vil~vk~~~~~~v~~~i~~~--l~~~~~iv~~~nG~~-~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~~~~~g~  159 (317)
T 2qyt_A           84 VDYILFCTKDYDMERGVAEIRPM--IGQNTKILPLLNGAD-IAERMRTYLPDT-VVWKGCVYISARKSAPGLITLEADRE  159 (317)
T ss_dssp             EEEEEECCSSSCHHHHHHHHGGG--EEEEEEEEECSCSSS-HHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEecCcccHHHHHHHHHhh--cCCCCEEEEccCCCC-cHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEEEcCCCc
Confidence            99999999999999999988 76  777888888654322 335677777542 3444444333221110     11222


Q ss_pred             ceeeeee-ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHH
Q 023897          142 AFVYEKV-RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAK  184 (275)
Q Consensus       142 ~~~~~~~-~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~  184 (275)
                      ..++... .+.+.+.. .++++|+..|.++++.+.-.......+
T Consensus       160 ~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl  202 (317)
T 2qyt_A          160 LFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKF  202 (317)
T ss_dssp             EEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHH
T ss_pred             eEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHH
Confidence            2223222 22245566 899999999988877664444444443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.60  E-value=6e-15  Score=122.04  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=119.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-hH-HHHcC-------ceEecChHHHhccCCCEEEEecCchhHH
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-QL-CHRSG-------ISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~-a~~~g-------~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      |||+||| +|.||+.++..|.+.|++|++++|+++. +. ....+       +. ..+++++ ++++|+||+|+|++.+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~D~Vi~~~~~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDA-AEACDIAVLTIPWEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHH-HHHCSEEEECSCHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHH-HhcCCEEEEeCChhhHH
Confidence            6899999 9999999999999999999999999742 22 22222       33 3566665 47899999999999999


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCC-CCh-----------hHHHHHHhhCCCCCceeecCC-CCCCCCCcCCccccceeeee
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLS-VKE-----------YPRNVLLQVLPEEMDVLCTHP-MFGPESGQNGWKDFAFVYEK  147 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s-~k~-----------~~~~~l~~~l~~~~~~v~~hP-~~g~~~~~~~~~g~~~~~~~  147 (275)
                      +++.++ +.  + ++++++|+++ +..           ...+.+++.++ +.+++..|| +.+.........+...++++
T Consensus        79 ~~~~~l~~~--~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  154 (212)
T 1jay_A           79 DTARDLKNI--L-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAARFANLDEKFDWDVPVC  154 (212)
T ss_dssp             HHHHHTHHH--H-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHHHHCTTCCCCEEEEEE
T ss_pred             HHHHHHHHH--c-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHHhhCcCCCCCccEEEE
Confidence            999988 65  6 4889999886 331           22466777665 367888764 43332111002344455554


Q ss_pred             eecCChHHHHHHHHHHHHc-CCeEEEcChhHHHHHHHHhhhhHHHHHHHH
Q 023897          148 VRIRDEATCSSFLRIFESE-GCKMLEMSCEEHDKVAAKSQFLTHTIGRVL  196 (275)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~-G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l  196 (275)
                      ..  +++..+.++++|+.+ |.+++.+++.+.  ...+-...|.++..+.
T Consensus       155 g~--~~~~~~~v~~l~~~~~G~~~~~~~~~~~--a~~~k~~~~~~~~~~~  200 (212)
T 1jay_A          155 GD--DDESKKVVMSLISEIDGLRPLDAGPLSN--SRLVESLTPLILNIMR  200 (212)
T ss_dssp             ES--CHHHHHHHHHHHHHSTTEEEEEEESGGG--HHHHHTHHHHHHHHHH
T ss_pred             CC--cHHHHHHHHHHHHHcCCCCceeccchhH--HHHhcchHHHHHHHHH
Confidence            32  577889999999999 998888775432  3333334444444443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.60  E-value=3.2e-14  Score=124.54  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=116.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC--------------ceEecChH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG--------------ISFFSDKR   61 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g--------------~~~~~~~~   61 (275)
                      ++...||+|||+|.||+.+|..++.+|++|++||++++ ...+           .+.|              ++.++++.
T Consensus         3 ~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~   82 (319)
T 3ado_A            3 SPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLA   82 (319)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchH
Confidence            44557999999999999999999999999999999974 2211           1111              24567887


Q ss_pred             HHhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCc
Q 023897           62 AFLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGW  138 (275)
Q Consensus        62 ~~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~  138 (275)
                      ++ ++++|+|+-|||.+.  -.+++.++ ..  +++++|+.+.+|.-.  ...+.+.++...+|++.||..++..-    
T Consensus        83 ~a-~~~ad~ViEav~E~l~iK~~lf~~l~~~--~~~~aIlaSNTSsl~--is~ia~~~~~p~r~ig~HffNP~~~m----  153 (319)
T 3ado_A           83 EA-VEGVVHIQECVPENLDLKRKIFAQLDSI--VDDRVVLSSSSSCLL--PSKLFTGLAHVKQCIVAHPVNPPYYI----  153 (319)
T ss_dssp             HH-TTTEEEEEECCCSCHHHHHHHHHHHHTT--CCSSSEEEECCSSCC--HHHHHTTCTTGGGEEEEEECSSTTTC----
T ss_pred             hH-hccCcEEeeccccHHHHHHHHHHHHHHH--hhhcceeehhhhhcc--chhhhhhccCCCcEEEecCCCCcccc----
Confidence            76 489999999999863  36888888 77  889999987666533  45667766666789999997777642    


Q ss_pred             cccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          139 KDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                        ..+=++++..++++.++.+.++++.+|.+++++.
T Consensus       154 --~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~  187 (319)
T 3ado_A          154 --PLVELVPHPETSPATVDRTHALMRKIGQSPVRVL  187 (319)
T ss_dssp             --CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             --chHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcC
Confidence              2233445556789999999999999999987663

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.60  E-value=1.4e-14  Score=140.10  Aligned_cols=153  Identities=11%  Similarity=0.068  Sum_probs=114.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g-------------~~~~~~~~~~~   64 (275)
                      ..+||+|||+|.||+++|..|+++|++|++||++++ .+.+           .+.|             ++.+++++.  
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~--  390 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD--  390 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT--
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHH--
Confidence            457899999999999999999999999999999985 2221           1233             345667743  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++||+||+|||.+.  ..+++.++ +.  +++++++++.+|...  ...+.+.+....+|++.|++.++..      +.
T Consensus       391 ~~~aDlVIeaV~e~~~vk~~v~~~l~~~--~~~~~IlasntStl~--i~~la~~~~~~~~~ig~hf~~P~~~------~~  460 (715)
T 1wdk_A          391 FGNVDLVVEAVVENPKVKQAVLAEVENH--VREDAILASNTSTIS--ISLLAKALKRPENFVGMHFFNPVHM------MP  460 (715)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHTT--SCTTCEEEECCSSSC--HHHHGGGCSCGGGEEEEECCSSTTT------CC
T ss_pred             HCCCCEEEEcCCCCHHHHHHHHHHHHhh--CCCCeEEEeCCCCCC--HHHHHHHhcCccceEEEEccCCccc------Cc
Confidence            489999999999764  45777888 76  888999987666543  3456666654468999999875442      22


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .+.++++..++++.++.+.++++.+|..++++.
T Consensus       461 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~  493 (715)
T 1wdk_A          461 LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN  493 (715)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEc
Confidence            233444444578899999999999999888875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.60  E-value=7.5e-15  Score=136.11  Aligned_cols=178  Identities=13%  Similarity=0.084  Sum_probs=114.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh-hHHHH-------------------cCceEecChHHHhcc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS-QLCHR-------------------SGISFFSDKRAFLEA   66 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~-~~a~~-------------------~g~~~~~~~~~~~~~   66 (275)
                      +++|||+|||+|.||..+|..|+++  |++|++||++++. +...+                   .++..++++.++ +.
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~-~~   85 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKA-IA   85 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH-HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH-hh
Confidence            3458999999999999999999998  7999999999853 22111                   134566777665 47


Q ss_pred             CCCEEEEecCch---------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC------CC-cee
Q 023897           67 DNDVILISTSIL---------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE------EM-DVL  123 (275)
Q Consensus        67 ~aD~iilavp~~---------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~------~~-~~v  123 (275)
                      ++|+||+|||..               .+.++++.+ +.  ++++++|++.+++.....+.+.+.+..      +. .++
T Consensus        86 ~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v  163 (481)
T 2o3j_A           86 EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQY--AGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQV  163 (481)
T ss_dssp             HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHH--CCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEE
T ss_pred             cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHh--CCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEE
Confidence            899999998764               378888888 77  889999999887776555555443321      12 235


Q ss_pred             ecCCCCCCCCCc-CCccccceeeeeeecC--ChHHHHHHHHHHHHcCC-eEEEcChhHHHHHHHHhhhhH
Q 023897          124 CTHPMFGPESGQ-NGWKDFAFVYEKVRIR--DEATCSSFLRIFESEGC-KMLEMSCEEHDKVAAKSQFLT  189 (275)
Q Consensus       124 ~~hP~~g~~~~~-~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~G~-~v~~~~~~~hD~~~a~~~~lp  189 (275)
                      ..+|.+..+-.. ......+.++.+....  .++..+.++++++.++. .++.++.-....+..++.+..
T Consensus       164 ~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~  233 (481)
T 2o3j_A          164 LSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAF  233 (481)
T ss_dssp             EECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred             EeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH
Confidence            566654332110 0001122344332210  12467889999999985 544444344466666665544

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.37  E-value=1.1e-16  Score=131.87  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=113.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      ...|||+|||+|.||++++..|.+.|++|++|+|+++.+.....|+... ++.++ ++++|+||+|||++.+.+++ ++.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~-~~~~~-~~~aDvVilav~~~~~~~v~-~l~   93 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL-CYSEA-ASRSDVIVLAVHREHYDFLA-ELA   93 (201)
Confidence            4668999999999999999999999999999999876322233466554 66664 47899999999999888777 552


Q ss_pred             CCCCCCCcEEEeCCCCCh------hHHHHHHhhCCCCCceeecCCCCCCCCCcCCc-cccc-eeeeeeecCChHHHHHHH
Q 023897           89 VHCLQRRTLIADVLSVKE------YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGW-KDFA-FVYEKVRIRDEATCSSFL  160 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s~k~------~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~  160 (275)
                      .  +.++++++|+++...      .-.+.+++.++. .+++++.|+.+......+. .+.. .++++   .+++..+.++
T Consensus        94 ~--~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g~~~~~~~g---~~~~~~~~v~  167 (201)
T 2yjz_A           94 D--SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDASRQVFVCG---NDSKAKDRVM  167 (201)
Confidence            2  356889999876432      113455555543 4677888877666432111 1221 33332   2566788999


Q ss_pred             HHHHHcCCeEEEcChhHHHH
Q 023897          161 RIFESEGCKMLEMSCEEHDK  180 (275)
Q Consensus       161 ~l~~~~G~~v~~~~~~~hD~  180 (275)
                      ++|+.+|.+++.+.+-...+
T Consensus       168 ~ll~~~G~~~~~~G~l~~a~  187 (201)
T 2yjz_A          168 DIARTLGLTPLDQGSLVAAK  187 (201)
Confidence            99999999988887543333

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.58  E-value=6e-14  Score=123.40  Aligned_cols=161  Identities=18%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc-------------eEecChHHHhccCCCEEEEe
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI-------------SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~-------------~~~~~~~~~~~~~aD~iila   74 (275)
                      -.+|||+|||+|.||+++|..|+++|++|++| ++++ .+...+.|.             ..+++.++ + .++|+||+|
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~D~vila   93 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-V-QGADLVLFC   93 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-G-TTCSEEEEC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-c-CCCCEEEEE
Confidence            35689999999999999999999999999999 7764 343333343             33456655 3 789999999


Q ss_pred             cCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCC-----CCCCCCCcCCccccceeeeee
Q 023897           75 TSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP-----MFGPESGQNGWKDFAFVYEKV  148 (275)
Q Consensus        75 vp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP-----~~g~~~~~~~~~g~~~~~~~~  148 (275)
                      ||...+.++++.+ +.  +.++++++.+.+--. ..+.+.+.++  .+++++..     ..||....+...|.++  .+ 
T Consensus        94 vk~~~~~~~l~~l~~~--l~~~~~iv~~~nGi~-~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~~~--ig-  165 (318)
T 3hwr_A           94 VKSTDTQSAALAMKPA--LAKSALVLSLQNGVE-NADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGELV--IE-  165 (318)
T ss_dssp             CCGGGHHHHHHHHTTT--SCTTCEEEEECSSSS-HHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEEEE--EC-
T ss_pred             cccccHHHHHHHHHHh--cCCCCEEEEeCCCCC-cHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCceEE--Ec-
Confidence            9999999999999 77  888888887654322 2356777775  34443221     2344432222223222  11 


Q ss_pred             ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897          149 RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA  183 (275)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a  183 (275)
                         ..+..+.++++|+..|++++..+.-.......
T Consensus       166 ---~~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~K  197 (318)
T 3hwr_A          166 ---PTSHGANLAAIFAAAGVPVETSDNVRGALWAK  197 (318)
T ss_dssp             ---CCTTTHHHHHHHHHTTCCEEECSCHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHhCCCCcEechHHHHHHHHH
Confidence               12356789999999999988876444444433

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.58  E-value=6.4e-15  Score=136.16  Aligned_cols=172  Identities=11%  Similarity=0.098  Sum_probs=109.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh-hHH---------------HH----cCceEecChHHHhccC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS-QLC---------------HR----SGISFFSDKRAFLEAD   67 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~-~~a---------------~~----~g~~~~~~~~~~~~~~   67 (275)
                      .+|||+|||+|.||..+|..|++.  |++|++|||+++. +..               ..    .++..++++.++ +++
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~-~~~   82 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDA-IKE   82 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH-HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH-Hhc
Confidence            357999999999999999999998  8999999999853 221               11    356677888775 479


Q ss_pred             CCEEEEecCchh---------------HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCC
Q 023897           68 NDVILISTSILS---------------LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFG  130 (275)
Q Consensus        68 aD~iilavp~~~---------------~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g  130 (275)
                      +|+||+|||...               +.++++.+ +.  +++++++++.+++.....+.+.+.+.. +..++..+-.++
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQN--SNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHT--CCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhh--CCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeC
Confidence            999999998643               46777777 66  788999999888776555555444321 111122222344


Q ss_pred             CCCCcCCc-----cccceeeeeeec--CChHHHHHHHHHHHHc-CCe-EEEcChhHHHHHHHHh
Q 023897          131 PESGQNGW-----KDFAFVYEKVRI--RDEATCSSFLRIFESE-GCK-MLEMSCEEHDKVAAKS  185 (275)
Q Consensus       131 ~~~~~~~~-----~g~~~~~~~~~~--~~~~~~~~~~~l~~~~-G~~-v~~~~~~~hD~~~a~~  185 (275)
                      |+...++.     ...+.++.+...  .+++..+.++++++.+ |.. ++..+. .......++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~ae~~Kl~  223 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT-WSSELSKLA  223 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECH-HHHHHHHHH
T ss_pred             HHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCH-HHHHHHHHH
Confidence            55432221     111124333210  1466788999999998 654 444443 333344443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.58  E-value=2e-14  Score=126.49  Aligned_cols=168  Identities=17%  Similarity=0.255  Sum_probs=108.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCc---------------eEecChHHHhccCCCEEEEec
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGI---------------SFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~---------------~~~~~~~~~~~~~aD~iilav   75 (275)
                      +|||+|||+|.||+++|..|+++|++|++|+|++. +...+.|+               ..+++++++ .+.+|+||+||
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~-~~~~DlVilav   79 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAEL-ETKPDCTLLCI   79 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGC-SSCCSEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHc-CCCCCEEEEec
Confidence            37999999999999999999999999999999873 22222232               234566663 35899999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC--cCCcc-ccceeeee-eec
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG--QNGWK-DFAFVYEK-VRI  150 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~--~~~~~-g~~~~~~~-~~~  150 (275)
                      |...+.++++.+ +.  +.++++++.+..--. ..+.+++.++.. .++++-...|....  ++... +...+..+ ..+
T Consensus        80 K~~~~~~~l~~l~~~--l~~~t~Iv~~~nGi~-~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~  155 (320)
T 3i83_A           80 KVVEGADRVGLLRDA--VAPDTGIVLISNGID-IEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPG  155 (320)
T ss_dssp             CCCTTCCHHHHHTTS--CCTTCEEEEECSSSS-CSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred             CCCChHHHHHHHHhh--cCCCCEEEEeCCCCC-hHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCCEEEEecCCC
Confidence            999999999999 77  888887776543221 125567777643 45544332322211  01111 11112221 122


Q ss_pred             CChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHH
Q 023897          151 RDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAK  184 (275)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~  184 (275)
                      .+.+..+.+.++|+..|++++..+.-.......+
T Consensus       156 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  189 (320)
T 3i83_A          156 GVSERVKTLAAAFEEAGIDGIATENITTARWQKC  189 (320)
T ss_dssp             CCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhCCCCceECHHHHHHHHHHH
Confidence            3456788999999999999888764444444443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.58  E-value=3.1e-14  Score=131.71  Aligned_cols=168  Identities=13%  Similarity=0.116  Sum_probs=109.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHc--------------------CceEecChHHHhccCCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRS--------------------GISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~--------------------g~~~~~~~~~~~~~~aD   69 (275)
                      .|||+|||+|.||..+|..|+++|++|++||++++. +...+.                    .+..+++++++ +.++|
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a-~~~aD   86 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA-VAHGD   86 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH-HHHCS
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH-hhcCC
Confidence            489999999999999999999999999999999853 222211                    24567788765 47899


Q ss_pred             EEEEecCc----------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC----CC---CceeecCCCCCC
Q 023897           70 VILISTSI----------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP----EE---MDVLCTHPMFGP  131 (275)
Q Consensus        70 ~iilavp~----------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~----~~---~~~v~~hP~~g~  131 (275)
                      +||+|||.          ..+.++++.+ +.  +++++++++.+++.....+.+.+.+.    .+   ..+   .-.++|
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~--l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~---~v~~~P  161 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRY--MTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMF---SVVSNP  161 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHH--CCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE---EEEECC
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHHHHHHHh--cCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccE---EEEECh
Confidence            99999998          7889999998 77  88999999988765444343333221    11   111   113455


Q ss_pred             CCCcCCcc----ccc-eeeeeeecCCh----HHHHHHHHHHHHcCC--eEEEcChhHHHHHHHHhh
Q 023897          132 ESGQNGWK----DFA-FVYEKVRIRDE----ATCSSFLRIFESEGC--KMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       132 ~~~~~~~~----g~~-~~~~~~~~~~~----~~~~~~~~l~~~~G~--~v~~~~~~~hD~~~a~~~  186 (275)
                      +...++..    +.+ .++.+.  .++    +..+.++++|+.++.  .++..+.-....+..++.
T Consensus       162 e~~~eG~~~~~~~~p~~iviG~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~  225 (478)
T 2y0c_A          162 EFLKEGAAVDDFTRPDRIVIGC--DDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAA  225 (478)
T ss_dssp             CCCCTTCHHHHHHSCSCEEEEC--CSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHH
T ss_pred             hhhcccceeeccCCCCEEEEEE--CCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHH
Confidence            54433221    112 344332  234    678889999998663  344443233334444443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.57  E-value=4.1e-14  Score=136.92  Aligned_cols=153  Identities=12%  Similarity=0.063  Sum_probs=112.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------HcC-------------ceEecChHHHh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RSG-------------ISFFSDKRAFL   64 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~g-------------~~~~~~~~~~~   64 (275)
                      .++||+|||+|.||+++|..|+++|++|++||++++ .+.+.           +.|             ++.+++++.  
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~--  388 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYES--  388 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGG--
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHH--
Confidence            457899999999999999999999999999999985 22211           122             345667743  


Q ss_pred             ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897           65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF  141 (275)
Q Consensus        65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~  141 (275)
                      +++||+||+|||.+.  ..+++.++ +.  +++++++++.+|...  ...+.+.+....++++.|++.++..      ..
T Consensus       389 ~~~aDlVIeaVpe~~~vk~~v~~~l~~~--~~~~~IlasntStl~--i~~la~~~~~p~~~iG~hf~~P~~~------~~  458 (725)
T 2wtb_A          389 FRDVDMVIEAVIENISLKQQIFADLEKY--CPQHCILASNTSTID--LNKIGERTKSQDRIVGAHFFSPAHI------MP  458 (725)
T ss_dssp             GTTCSEEEECCCSCHHHHHHHHHHHHHH--SCTTCEEEECCSSSC--HHHHTTTCSCTTTEEEEEECSSTTT------CC
T ss_pred             HCCCCEEEEcCcCCHHHHHHHHHHHHhh--CCCCcEEEeCCCCCC--HHHHHHHhcCCCCEEEecCCCCccc------Cc
Confidence            489999999999875  45777778 66  888999987665433  2456665544457999999775432      22


Q ss_pred             ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      .+.++++..++++.++.+.++++.+|..++++.
T Consensus       459 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~  491 (725)
T 2wtb_A          459 LLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVG  491 (725)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhCCEEEEEC
Confidence            344444444588899999999999999888875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.56  E-value=6.5e-15  Score=127.33  Aligned_cols=154  Identities=19%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc---Cc----e-EecChHHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS---GI----S-FFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~---g~----~-~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |||+|||+|.||+++|..|.++|++|++|+|+++ .+.....   |.    . ..++. +. ++++|+||+|||++.+.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~d~vi~~v~~~~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP-DF-LATSDLLLVTLKAWQVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH-HH-HHTCSEEEECSCGGGHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCc-cc-cCCCCEEEEEecHHhHHH
Confidence            6899999999999999999999999999999874 2211111   21    1 23344 43 378999999999999999


Q ss_pred             HhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCC-----CCCCCCcCCccccceeeeeeecCChHHH
Q 023897           83 VLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM-----FGPESGQNGWKDFAFVYEKVRIRDEATC  156 (275)
Q Consensus        83 v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~-----~g~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (275)
                      +++++ +.  ++++++++++.+.- ...+.+.+.++.   ++.++++     .+| .......|. ..+..... +++..
T Consensus        79 v~~~l~~~--l~~~~~vv~~~~g~-~~~~~l~~~~~~---~~~g~~~~~~~~~~p-~~~~~~~g~-~~i~~~~~-~~~~~  149 (291)
T 1ks9_A           79 AVKSLAST--LPVTTPILLIHNGM-GTIEELQNIQQP---LLMGTTTHAARRDGN-VIIHVANGI-THIGPARQ-QDGDY  149 (291)
T ss_dssp             HHHHHHTT--SCTTSCEEEECSSS-CTTGGGTTCCSC---EEEEEECCEEEEETT-EEEEEECCC-EEEEESSG-GGTTC
T ss_pred             HHHHHHhh--CCCCCEEEEecCCC-CcHHHHHHhcCC---eEEEEEeEccEEcCC-EEEEecccc-eEEccCCC-CcchH
Confidence            99999 77  88888888865422 122345555542   4444442     344 211122343 33332222 34567


Q ss_pred             HHHHHHHHHcCCeEEEcChh
Q 023897          157 SSFLRIFESEGCKMLEMSCE  176 (275)
Q Consensus       157 ~~~~~l~~~~G~~v~~~~~~  176 (275)
                      +.++++|+..|.++++.+.-
T Consensus       150 ~~~~~ll~~~g~~~~~~~~~  169 (291)
T 1ks9_A          150 SYLADILQTVLPDVAWHNNI  169 (291)
T ss_dssp             THHHHHHHTTSSCEEECTTH
T ss_pred             HHHHHHHHhcCCCCeecHHH
Confidence            88999999999988887643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.53  E-value=3.8e-14  Score=130.58  Aligned_cols=171  Identities=12%  Similarity=0.073  Sum_probs=112.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CC-eEEEEcCChh----hhHHHH----------------------cC-ceEecC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GH-ILRATSRTDH----SQLCHR----------------------SG-ISFFSD   59 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~-~V~~~dr~~~----~~~a~~----------------------~g-~~~~~~   59 (275)
                      ...|||+|||+|.||..+|..|+++ |+ +|++||++++    .....+                      .| +..+++
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            3568999999999999999999999 99 9999999976    322111                      22 355666


Q ss_pred             hHHHhccCCCEEEEecCchh------------HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHH-----hhCCC--C
Q 023897           60 KRAFLEADNDVILISTSILS------------LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLL-----QVLPE--E  119 (275)
Q Consensus        60 ~~~~~~~~aD~iilavp~~~------------~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~-----~~l~~--~  119 (275)
                       .++ ++++|+||+|||.+.            +..+.+.+ +.  +++++++++.+++.....+.+.     +..+.  +
T Consensus        96 -~ea-~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~  171 (478)
T 3g79_A           96 -FSR-ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKY--LKPGMLVVLESTITPGTTEGMAKQILEEESGLKAG  171 (478)
T ss_dssp             -GGG-GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHH--CCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBT
T ss_pred             -HHH-HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhh--cCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcC
Confidence             454 489999999999763            56777778 76  8899999998876654333222     22221  1


Q ss_pred             C-ceeecCCCCCCCCCc-CCccccceeeeeeecCChHHHHHHHHHHHHc-CCeEEEcChhHHHHHHHHhh
Q 023897          120 M-DVLCTHPMFGPESGQ-NGWKDFAFVYEKVRIRDEATCSSFLRIFESE-GCKMLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       120 ~-~~v~~hP~~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-G~~v~~~~~~~hD~~~a~~~  186 (275)
                      . ..+...|.++.+-.. ......+.++.+   .+++..++++++++.+ +..++.++.-.-..++.++.
T Consensus       172 ~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G---~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~  238 (478)
T 3g79_A          172 EDFALAHAPERVMVGRLLKNIREHDRIVGG---IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAE  238 (478)
T ss_dssp             TTBEEEECCCCCCTTSHHHHHHHSCEEEEE---SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHH
T ss_pred             CceeEEeCCccCCccchhhhhcCCcEEEEe---CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHH
Confidence            1 124445554433210 001112244432   3677889999999999 77766665555555666554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.51  E-value=3.9e-13  Score=121.87  Aligned_cols=167  Identities=14%  Similarity=0.107  Sum_probs=108.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcC------------------ceEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSG------------------ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g------------------~~~~~~~~~~~~~~aD~ii   72 (275)
                      |||+|||+|.||..+|..|++ |++|++|||+++. +...+.+                  +..++++.++ +.++|+||
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~-~~~aDvvi   78 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA-YKEAELVI   78 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH-HHHCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHH-hcCCCEEE
Confidence            699999999999999999999 9999999999853 3322222                  2456677665 47899999


Q ss_pred             EecCch-----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc-CCcc
Q 023897           73 ISTSIL-----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ-NGWK  139 (275)
Q Consensus        73 lavp~~-----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~-~~~~  139 (275)
                      +|||+.           .+.++++.+ +   +++++++++.+++.....+.+.+.++..  .+...|.+..+-.. ..+.
T Consensus        79 iavpt~~~~~~~~~dl~~v~~v~~~i~~---l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~  153 (402)
T 1dlj_A           79 IATPTNYNSRINYFDTQHVETVIKEVLS---VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL  153 (402)
T ss_dssp             ECCCCCEETTTTEECCHHHHHHHHHHHH---HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred             EecCCCcccCCCCccHHHHHHHHHHHHh---hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence            999997           588888887 4   5678999987777777777888777543  34445654332110 0011


Q ss_pred             ccceeeeeeecCC----hHHHHHHHHHHHHcCCe----EEEcChhHHHHHHHHhh
Q 023897          140 DFAFVYEKVRIRD----EATCSSFLRIFESEGCK----MLEMSCEEHDKVAAKSQ  186 (275)
Q Consensus       140 g~~~~~~~~~~~~----~~~~~~~~~l~~~~G~~----v~~~~~~~hD~~~a~~~  186 (275)
                      +.+.++.+.....    .+..+.+.++|...+.+    ++..+ -....+..++.
T Consensus       154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d-i~~ae~~Kl~~  207 (402)
T 1dlj_A          154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMG-ASEAEAVKLFA  207 (402)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEEC-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecC-hHHHHHHHHHH
Confidence            2222443322100    15567788888764433    34444 33444555443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.48  E-value=2.8e-13  Score=123.25  Aligned_cols=168  Identities=11%  Similarity=0.081  Sum_probs=110.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcC---------------------ceEecChHHHhccCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSG---------------------ISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g---------------------~~~~~~~~~~~~~~a   68 (275)
                      ...|..|||+|.||..+|..|+++||+|++||++++.....+.|                     +..+++    + ++|
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~-~~a   84 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----P-EAS   84 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----C-CCC
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----h-hhC
Confidence            35689999999999999999999999999999998643222222                     233333    2 579


Q ss_pred             CEEEEecCchh------------HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-C-CCC-----ceeecCCC
Q 023897           69 DVILISTSILS------------LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-P-EEM-----DVLCTHPM  128 (275)
Q Consensus        69 D~iilavp~~~------------~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~-~~~-----~~v~~hP~  128 (275)
                      |+||+|||.+.            +..+.+.+ +.  +++++++++.+++.....+.+.+.+ . .+.     ..+...|.
T Consensus        85 Dvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~--l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe  162 (431)
T 3ojo_A           85 DVFIIAVPTPNNDDQYRSCDISLVMRALDSILPF--LKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE  162 (431)
T ss_dssp             SEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGG--CCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred             CEEEEEeCCCccccccCCccHHHHHHHHHHHHHh--CCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence            99999999864            67777888 77  8999999999988876665543321 1 111     13444554


Q ss_pred             CCCCCCc-CCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhh
Q 023897          129 FGPESGQ-NGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQF  187 (275)
Q Consensus       129 ~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~  187 (275)
                      +..+-.. ......+.++.+   .+++..++++++++.++..++.++......++.++.+
T Consensus       163 ~~~~G~A~~~~~~p~~Iv~G---~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N  219 (431)
T 3ojo_A          163 RVLPGKILEELVHNNRIIGG---VTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMEN  219 (431)
T ss_dssp             CCCTTSHHHHHHHSCEEEEE---SSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHH
T ss_pred             cCCCcchhhcccCCCEEEEe---CCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHH
Confidence            4433110 011122244443   2678899999999999865544444455556666543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.48  E-value=7.3e-13  Score=115.90  Aligned_cols=229  Identities=13%  Similarity=0.112  Sum_probs=128.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecCh----------HHHhccCCCEEEEecCchh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDK----------RAFLEADNDVILISTSILS   79 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~----------~~~~~~~aD~iilavp~~~   79 (275)
                      +|||+|||+|.||+++|..|. +|++|++|+|++. .+...+.|+....+.          .+. ...+|+||+|||+..
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavK~~~   79 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSI-NSDFDLLVVTVKQHQ   79 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSC-CSCCSEEEECCCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccc-cCCCCEEEEEeCHHH
Confidence            489999999999999999999 9999999999984 444444566432110          222 368999999999999


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---cccc-ceeeeeeecCChHH
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDF-AFVYEKVRIRDEAT  155 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~-~~~~~~~~~~~~~~  155 (275)
                      +.+++..+..  +.+++ |+.+..--. ..+.+++.++. .+++++-...|....+++   ..+. .+.+....+ ..+.
T Consensus        80 ~~~~l~~l~~--~~~~~-ivs~~nGi~-~~e~l~~~~~~-~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~-~~~~  153 (307)
T 3ego_A           80 LQSVFSSLER--IGKTN-ILFLQNGMG-HIHDLKDWHVG-HSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDD-AEPD  153 (307)
T ss_dssp             HHHHHHHTTS--SCCCE-EEECCSSSH-HHHHHHTCCCS-CEEEEEEECCEEEECSSSEEEEEECCCEEEEECTT-CCGG
T ss_pred             HHHHHHHhhc--CCCCe-EEEecCCcc-HHHHHHHhCCC-CcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCC-CcHH
Confidence            9999999932  45666 554433222 23467777664 345444433333221111   0111 122221111 1334


Q ss_pred             HHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhH-HHHHHHHhhc--c-------------------cc--cCcccCcch
Q 023897          156 CSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLT-HTIGRVLSEL--E-------------------IQ--STSMNTKGF  211 (275)
Q Consensus       156 ~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp-~~~a~~l~~~--~-------------------~~--~~~l~~~~~  211 (275)
                      .+.+.++|...|..+...+.-...+...++-..+ +.++ ++.+.  |                   ..  ........+
T Consensus       154 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~lt-al~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~~~~~~  232 (307)
T 3ego_A          154 RLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLT-ALLQVKNGELLTTPAYLAFMKLVFQEACRILKLENEEKAW  232 (307)
T ss_dssp             GGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHH-HHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHH-HHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccChHHHH
Confidence            4556666777787777765444444444332222 1111 11110  0                   00  001111233


Q ss_pred             HHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHH
Q 023897          212 ETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEA  248 (275)
Q Consensus       212 ~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~  248 (275)
                      ..+.++........|.|++|+....+..++.+.-+.-
T Consensus       233 ~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i~G~vv  269 (307)
T 3ego_A          233 ERVQAVCGQTKENRSSMLVDVIGGRQTEADAIIGYLL  269 (307)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHTCCCSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCchHHHHHHcCCcccHHHhhhHHH
Confidence            4444555444455689999998777666665554443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.44  E-value=7.4e-13  Score=117.86  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-Cc--------------eEecChHHHhccCCCEEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-GI--------------SFFSDKRAFLEADNDVIL   72 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-g~--------------~~~~~~~~~~~~~aD~ii   72 (275)
                      |++|||+|||+|.||+.+|..|.+.|++|++|+|+++ .+...+. ++              ..+++++++ +.++|+||
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   80 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-VKDADVIL   80 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-HTTCSEEE
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH-HhcCCEEE
Confidence            3458999999999999999999999999999999975 3333222 22              345677775 47999999


Q ss_pred             EecCchhHHHHhhcC-CCCCCCCCcEEEeCCC-CChhH--HHHHHhhCCCCCcee--ecCCCCCCC
Q 023897           73 ISTSILSLSEVLNSL-PVHCLQRRTLIADVLS-VKEYP--RNVLLQVLPEEMDVL--CTHPMFGPE  132 (275)
Q Consensus        73 lavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s-~k~~~--~~~l~~~l~~~~~~v--~~hP~~g~~  132 (275)
                      +|||.....++++.+ +.  +++++++++..+ .+...  .+.+.+..+.++.|+  +.+|+++..
T Consensus        81 ~~v~~~~~~~~~~~l~~~--l~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~  144 (359)
T 1bg6_A           81 IVVPAIHHASIAANIASY--ISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRS  144 (359)
T ss_dssp             ECSCGGGHHHHHHHHGGG--CCTTCEEEESSCCSSHHHHHHHHHHHTTCCCCEEEEESSCSEEEEC
T ss_pred             EeCCchHHHHHHHHHHHh--CCCCCEEEEcCCCchHHHHHHHHHHhcCCCCeEEEEecCCcEEEEe
Confidence            999999999999988 77  888998888755 33321  122333221223353  568877643

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.41  E-value=1.4e-13  Score=119.68  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc---eEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI---SFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~---~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      +|||+|||+|.||+++|..|.++|++|++|+|+++ .......|.   ....+..+.+...+|+||+|||+..+.++++.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~   81 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPH   81 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGG
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHHHHHH
Confidence            47999999999999999999999999999999974 222222232   22223334222689999999999999999999


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC--ccccceeeeeeecCChHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG--WKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                      + +.  +.++++|+.+..--..     .+.++. .+++++.+..+....+++  ..+ +.-+..   .+.+..+.+.++|
T Consensus        82 l~~~--l~~~~~iv~~~nGi~~-----~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~-~~~~~~---~~~~~~~~l~~~l  149 (294)
T 3g17_A           82 LTYL--AHEDTLIILAQNGYGQ-----LEHIPF-KNVCQAVVYISGQKKGDVVTHFR-DYQLRI---QDNALTRQFRDLV  149 (294)
T ss_dssp             HHHH--EEEEEEEEECCSSCCC-----GGGCCC-SCEEECEEEEEEEEETTEEEEEE-EEEEEE---ECSHHHHHHHHHT
T ss_pred             HHHh--hCCCCEEEEeccCccc-----HhhCCC-CcEEEEEEEEEEEEcCCCEEEEC-CCEEec---CccHHHHHHHHHH
Confidence            9 77  7778877765532221     111443 233333221111111000  011 111111   1445678899999


Q ss_pred             HHcCCeEEEcChhHHHHHHHHh
Q 023897          164 ESEGCKMLEMSCEEHDKVAAKS  185 (275)
Q Consensus       164 ~~~G~~v~~~~~~~hD~~~a~~  185 (275)
                      +..|++++..+.-.......++
T Consensus       150 ~~~~~~~~~~~di~~~~w~Kl~  171 (294)
T 3g17_A          150 QDSQIDIVLEANIQQAIWYKLL  171 (294)
T ss_dssp             TTSSCEEEEESSHHHHHHHHHH
T ss_pred             HhCCCceEEChHHHHHHHHHHH
Confidence            9999998887644445454444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.37  E-value=1.2e-12  Score=115.03  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=94.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcC-ChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr-~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|+||+++|+.|+..|++|++||| ++....+.+.|+....+++++ ++++|+|++++|.. .+..++.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvVil~~p~~~~t~~~i~  221 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSL-LSVSQFFSLNAPSTPETRYFFN  221 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHH-HHHCSEEEECCCCCTTTTTCBS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHH-HhhCCEEEEeccCchHHHhhcC
Confidence            45678999999999999999999999999999999 875444556688766578886 58999999999975 3444442


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeeec
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVRI  150 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~  150 (275)
                       .. +.  ++++.+++|+++......+.+.+.+..+      ..+...+|   +. ..+.+....++++|...
T Consensus       222 ~~~l~~--mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP---~~-~~~L~~~~nviltPH~~  288 (320)
T 1gdh_A          222 KATIKS--LPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP---NI-NEGYYDLPNTFLFPHIG  288 (320)
T ss_dssp             HHHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT---SC-CTTGGGCTTEEECSSCT
T ss_pred             HHHHhh--CCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC---CC-CChhhhCCCEEECCcCC
Confidence             23 44  7899999999875322223333333221      23455566   22 12356666788887643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.36  E-value=9.9e-13  Score=115.27  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=95.3

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHh-
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVL-   84 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~-   84 (275)
                      .....++|||||+|.||+++|+.|+..|++|++|||++....+.+.|+.. .+++++ ++++|+|++++|... +..++ 
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~el-l~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKA-VSLEEL-LKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEE-CCHHHH-HHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCcee-cCHHHH-HhhCCEEEEeccCChHHHHhhC
Confidence            34567899999999999999999999999999999998544456678765 478885 589999999999643 33333 


Q ss_pred             hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      ++. +.  ++++.+++|+++......+.+.+.+..+      ..++..||+.... ..+.+....++++|..
T Consensus       216 ~~~l~~--mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~-~~~L~~~~nviltPH~  284 (313)
T 2ekl_A          216 YPQFEL--MKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEW-ELELLKHERVIVTTHI  284 (313)
T ss_dssp             HHHHHH--SCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHH-HHHHHHSTTEEECCSC
T ss_pred             HHHHhc--CCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcc-cchHhhCCCEEECCcc
Confidence            122 33  7889999999875432223444444322      2567788875110 0023455567878764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.33  E-value=3.8e-12  Score=112.90  Aligned_cols=137  Identities=14%  Similarity=0.109  Sum_probs=94.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh-h
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL-N   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~-~   85 (275)
                      ....++|||||+|.||+.+|+.|+..|++|++|||++....+...|+....+++++ ++++|+|++++|.. .+..++ .
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~~P~t~~t~~li~~  243 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDL-LFHSDCVTLHCGLNEHNHHLIND  243 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHH-HHHCSEEEECCCCCTTCTTSBSH
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHH-HhcCCEEEEcCCCCHHHHHHhHH
Confidence            45778999999999999999999999999999999875334455677766688886 58999999999975 444444 2


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      +. ..  ++++.+++++++.+....+.+.+.+..+      ..+...+|+....  ...+....++++|..
T Consensus       244 ~~l~~--mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~--~~L~~~~nvi~tPHi  310 (347)
T 1mx3_A          244 FTVKQ--MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ--GPLKDAPNLICTPHA  310 (347)
T ss_dssp             HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTS--STTTTCSSEEECSSC
T ss_pred             HHHhc--CCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCC--chHHhCCCEEEEchH
Confidence            23 44  7899999999876654344444444322      2355667753111  122333456666653

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.33  E-value=2.7e-12  Score=112.20  Aligned_cols=136  Identities=19%  Similarity=0.210  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.++..|++|++|||++....+.+.|+... +++++ ++++|+|++++|... +..++. 
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~-~l~el-l~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETL-LKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEEC-CHHHH-HHHCSEEEECCCCSTTTTTCBCH
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcccc-CHHHH-HhhCCEEEEecCCChHHhhhcCH
Confidence            45678999999999999999999999999999999985455566787653 78885 589999999999753 344442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC------CCceeecCCCCCCCCCcCCccccceeeeeeec
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE------EMDVLCTHPMFGPESGQNGWKDFAFVYEKVRI  150 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~------~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~  150 (275)
                      +. +.  ++++.+++|+++......+.+.+.+..      +..+...||+....   +.+....++++|..+
T Consensus       217 ~~l~~--mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~---~L~~~~nviltPh~~  283 (307)
T 1wwk_A          217 ERLKL--MKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDH---PLTKFDNVVLTPHIG  283 (307)
T ss_dssp             HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTC---GGGGCTTEEECSSCT
T ss_pred             HHHhc--CCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCC---hHHhCCCEEECCccc
Confidence            22 34  788999999987432222233333221      12456677763221   345666688887643

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.33  E-value=3.8e-12  Score=113.18  Aligned_cols=139  Identities=9%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHH
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEV   83 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v   83 (275)
                      .....++|||||+|.||+.+|+.++ ..|++|++|||++. .+.+.+.|+....+++++ ++++|+|++++|... +..+
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvVil~vp~~~~t~~l  237 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEEL-ARRSDCVSVSVPYMKLTHHL  237 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHH-HHHCSEEEECCCCSGGGTTC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHH-hccCCEEEEeCCCChHHHHH
Confidence            3567789999999999999999999 89999999999874 444555677766678885 589999999999853 4444


Q ss_pred             hh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCC-ceeecCCCCCCCC--CcCCccccceeeeeee
Q 023897           84 LN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEM-DVLCTHPMFGPES--GQNGWKDFAFVYEKVR  149 (275)
Q Consensus        84 ~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~-~~v~~hP~~g~~~--~~~~~~g~~~~~~~~~  149 (275)
                      +. +. +.  ++++++++++++.+....+.+.+.+..+. ...+ .-.++++.  ..+.+....++++|..
T Consensus       238 i~~~~l~~--mk~gailin~srg~~vd~~aL~~aL~~~~i~gag-lDv~~~EP~~~~~L~~~~nviltPH~  305 (348)
T 2w2k_A          238 IDEAFFAA--MKPGSRIVNTARGPVISQDALIAALKSGKLLSAG-LDVHEFEPQVSKELIEMKHVTLTTHI  305 (348)
T ss_dssp             BCHHHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEE-ESSCTTTTSCCHHHHTSSSEEECCSC
T ss_pred             hhHHHHhc--CCCCCEEEECCCCchhCHHHHHHHHHhCCceEEE-eccCCCCCCCCchhhcCCCEEEcCcC
Confidence            42 23 44  78899999999876544455555554331 1122 23455442  1123344456666653

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.32  E-value=4.5e-12  Score=111.89  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=95.4

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~   85 (275)
                      .....++|||||+|.||+++|+.++..|++|++|||++....+.+.|+.. .+++++ ++++|+|++++|... +..++.
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~el-l~~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQ-LPLEEI-WPLCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEE-CCHHHH-GGGCSEEEECCCCCTTTTTSBC
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCcee-CCHHHH-HhcCCEEEEecCCCHHHHHhhC
Confidence            34567899999999999999999999999999999987544556678765 478886 589999999999863 455552


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                       +. ..  ++++.+++|+++......+.+.+.+..+      ..++..||+..    .+.+....++++|..
T Consensus       239 ~~~l~~--mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~----~~L~~~~nvilTPH~  304 (335)
T 2g76_A          239 DNTFAQ--CKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRD----RALVDHENVISCPHL  304 (335)
T ss_dssp             HHHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSC----CHHHHSTTEEECSSC
T ss_pred             HHHHhh--CCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCC----chHHhCCCEEECCcC
Confidence             23 55  8899999999875432223333333221      24667788422    134455567888764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.31  E-value=6e-11  Score=114.59  Aligned_cols=153  Identities=13%  Similarity=0.145  Sum_probs=115.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH----------------------cCceEecChHHHhcc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR----------------------SGISFFSDKRAFLEA   66 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~----------------------~g~~~~~~~~~~~~~   66 (275)
                      ...||+|||+|.||+.+|..++.+|++|+++|++++ ...+.+                      ..+..+++.++ + .
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~  392 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-L-S  392 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-G-G
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-H-h
Confidence            457999999999999999999999999999999974 221110                      01245667766 3 7


Q ss_pred             CCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccce
Q 023897           67 DNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAF  143 (275)
Q Consensus        67 ~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~  143 (275)
                      +||+||-|||.+.  -.+++.++ ..  +++++|+.+.+|.-.  +..+.+.+....+|++.|+..++..-      ..+
T Consensus       393 ~aDlVIEAV~E~l~iK~~vf~~le~~--~~~~aIlASNTSsl~--i~~ia~~~~~p~r~ig~HFfnP~~~m------~LV  462 (742)
T 3zwc_A          393 TVDLVVEAVFEDMNLKKKVFAELSAL--CKPGAFLCTNTSALN--VDDIASSTDRPQLVIGTHFFSPAHVM------RLL  462 (742)
T ss_dssp             SCSEEEECCCSCHHHHHHHHHHHHHH--SCTTCEEEECCSSSC--HHHHHTTSSCGGGEEEEECCSSTTTC------CEE
T ss_pred             hCCEEEEeccccHHHHHHHHHHHhhc--CCCCceEEecCCcCC--hHHHHhhcCCccccccccccCCCCCC------ceE
Confidence            9999999999863  35788888 76  889999987666533  45666666656789999987666531      223


Q ss_pred             eeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          144 VYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                      -++++..++++.++.+.++.+.+|..++++.
T Consensus       463 Evi~g~~Ts~e~~~~~~~~~~~lgK~pV~vk  493 (742)
T 3zwc_A          463 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVG  493 (742)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEecCCCCCHHHHHHHHHHHHHhCCCCcccC
Confidence            3444556789999999999999999888774

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.30  E-value=2.9e-12  Score=110.85  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHh-h
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVL-N   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~-~   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++....    ......+++++ ++++|+|++++|. ..+..++ .
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~~~~~~~l~el-l~~aDiV~l~~P~t~~t~~li~~  193 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN----VDVISESPADL-FRQSDFVLIAIPLTDKTRGMVNS  193 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT----CSEECSSHHHH-HHHCSEEEECCCCCTTTTTCBSH
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc----cccccCChHHH-hhccCeEEEEeeccccchhhhhH
Confidence            35678999999999999999999999999999999874221    13455688886 5899999999995 3444444 2


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKV  148 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~  148 (275)
                      +. ..  ++++.+++|++..+....+.+.+.+..+      ..+....|+      .+.+....++++|.
T Consensus       194 ~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~------~pL~~~~nvilTPH  255 (290)
T 3gvx_A          194 RLLAN--ARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE------ITETNLRNAILSPH  255 (290)
T ss_dssp             HHHTT--CCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS------CCSCCCSSEEECCS
T ss_pred             HHHhh--hhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc------cchhhhhhhhcCcc
Confidence            23 44  7899999999875543334444433221      123344454      23344455777776

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.30  E-value=2.4e-11  Score=110.58  Aligned_cols=165  Identities=17%  Similarity=0.180  Sum_probs=105.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHH--------------------cC-ceEecChHHHhcc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHR--------------------SG-ISFFSDKRAFLEA   66 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~--------------------~g-~~~~~~~~~~~~~   66 (275)
                      ...+.+|+|||+|.+|..+|.+|++.||+|+++|.+++.....+                    .| +.++++.+++ +.
T Consensus        18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~a-i~   96 (444)
T 3vtf_A           18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEA-VA   96 (444)
T ss_dssp             TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHH-HH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHH-Hh
Confidence            34567999999999999999999999999999999985322221                    12 3567788776 48


Q ss_pred             CCCEEEEecCch----------hHHHHhhcC-CCCCC---CCCcEEEeCCCCChhHHH-----HHHhhCCCCCc-eeecC
Q 023897           67 DNDVILISTSIL----------SLSEVLNSL-PVHCL---QRRTLIADVLSVKEYPRN-----VLLQVLPEEMD-VLCTH  126 (275)
Q Consensus        67 ~aD~iilavp~~----------~~~~v~~~l-~~~~l---~~~~iv~d~~s~k~~~~~-----~l~~~l~~~~~-~v~~h  126 (275)
                      .+|++|+|||..          .+..+.+.+ +.  +   .++++|+.-+++.....+     .+++. ..+.. ++...
T Consensus        97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~--l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~~  173 (444)
T 3vtf_A           97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRG--IRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVASN  173 (444)
T ss_dssp             TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHH--HHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEEC
T ss_pred             cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHH--HhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeecC
Confidence            999999999852          455666666 44  4   357788877766553322     22222 22222 34444


Q ss_pred             CCCCCCCC-cCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHH
Q 023897          127 PMFGPESG-QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEH  178 (275)
Q Consensus       127 P~~g~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~h  178 (275)
                      |-+-.+-. ...+...+-++.+.  .++...+.+.++++.+...+++++++.-
T Consensus       174 PErl~eG~a~~d~~~~~riViG~--~~~~a~~~~~~ly~~~~~~~~~~~~~~A  224 (444)
T 3vtf_A          174 PEFLREGSALEDFFKPDRIVIGA--GDERAASFLLDVYKAVDAPKLVMKPREA  224 (444)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHTTTSCSCEEEECHHHH
T ss_pred             cccccCCccccccccCCcEEEcC--CCHHHHHHHHHHHhccCCCEEEechhHH
Confidence            43322210 00122233344332  3666778899999999888888877643

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.29  E-value=6.8e-12  Score=111.43  Aligned_cols=95  Identities=16%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.++..|++|++|||++....+.+.|+....+++++ ++++|+|++++|.. .+..++. 
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~el-l~~aDiV~l~~Plt~~t~~li~~  235 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDAL-FEQSDVLSVHLRLNDETRSIITV  235 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHH-HHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHH-HhhCCEEEEeccCcHHHHHhhCH
Confidence            45678999999999999999999999999999999875555667788877789986 58999999999964 3444432 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      +. +.  ++++.++++++...
T Consensus       236 ~~l~~--mk~gailIN~aRg~  254 (352)
T 3gg9_A          236 ADLTR--MKPTALFVNTSRAE  254 (352)
T ss_dssp             HHHTT--SCTTCEEEECSCGG
T ss_pred             HHHhh--CCCCcEEEECCCch
Confidence            22 44  78999999998644

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.29  E-value=4.2e-12  Score=112.05  Aligned_cols=131  Identities=15%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++...    .|.....+++++ ++++|+|++++|.. .+..++. 
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~el-l~~aDvVil~vP~~~~t~~li~~  235 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN----TNYTYYGSVVEL-ASNSDILVVACPLTPETTHIINR  235 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHH-HHTCSEEEECSCCCGGGTTCBCH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc----cCceecCCHHHH-HhcCCEEEEecCCChHHHHHhhH
Confidence            4567899999999999999999999999999999987532    256666788886 58999999999985 4555552 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                      +. +.  ++++++++++++.+....+.+.+.+..+      ..|...+|+..    .+.+....++++|..
T Consensus       236 ~~l~~--mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~L~~~~nviltPH~  300 (333)
T 3ba1_A          236 EVIDA--LGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP----EKLFGLENVVLLPHV  300 (333)
T ss_dssp             HHHHH--HCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC----GGGGGCTTEEECSSC
T ss_pred             HHHhc--CCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc----chhhcCCCEEECCcC
Confidence            23 44  7889999999876543334444433221      24555666422    234445556777654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.29  E-value=1.1e-11  Score=110.10  Aligned_cols=108  Identities=21%  Similarity=0.307  Sum_probs=81.7

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL   84 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~   84 (275)
                      .....++|||||+|+||+++|+.|+..|++|++|||++ ....+.+.|+....+++++ ++++|+|++++|.. .+..++
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~~Plt~~t~~li  238 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEM-LPKCDVIVINMPLTEKTRGMF  238 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHH-GGGCSEEEECSCCCTTTTTCB
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHH-HhcCCEEEECCCCCHHHHHhh
Confidence            34677899999999999999999999999999999987 3455666788777789996 58999999999963 333333


Q ss_pred             h-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           85 N-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        85 ~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      . +. ..  ++++.+++|++.......+.+.+.+.
T Consensus       239 ~~~~l~~--mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          239 NKELIGK--LKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             SHHHHHH--SCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cHHHHhc--CCCCCEEEECcCchhhCHHHHHHHHH
Confidence            2 22 33  78899999998654433344544443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.28  E-value=1.9e-11  Score=107.88  Aligned_cols=105  Identities=20%  Similarity=0.291  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh-h
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL-N   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~-~   85 (275)
                      ....++|||||+|+||+++|+.++..|++|++|||++..    ..+.....+++++ ++++|+|++++|.. .+..++ .
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~el-l~~aDvVil~vP~t~~t~~li~~  242 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDL-ARDSDVLAVCVAASAATQNIVDA  242 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHH-HHTCSEEEECC----------CH
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHH-HhcCCEEEEeCCCCHHHHHHhhH
Confidence            456789999999999999999999999999999998743    1344556788886 58999999999953 455555 2


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE  119 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~  119 (275)
                      +. ..  ++++.+++|++.......+.+.+.+..+
T Consensus       243 ~~l~~--mk~gailIN~aRG~vvde~aL~~aL~~g  275 (340)
T 4dgs_A          243 SLLQA--LGPEGIVVNVARGNVVDEDALIEALKSG  275 (340)
T ss_dssp             HHHHH--TTTTCEEEECSCC--------------C
T ss_pred             HHHhc--CCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            33 44  7899999999866544444555555433

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.27  E-value=1.3e-11  Score=108.97  Aligned_cols=137  Identities=16%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      .....++|||||+|.||+++|+.|+..|++|++|||++....+.+.|+... +++++ ++++|+|++|+|.. .+..++.
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~-~l~e~-l~~aDiVil~vp~~~~t~~~i~  219 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYM-DIDEL-LEKSDIVILALPLTRDTYHIIN  219 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEEC-CHHHH-HHHCSEEEECCCCCTTTTTSBC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceec-CHHHH-HhhCCEEEEcCCCChHHHHHhC
Confidence            356778999999999999999999999999999999985444555677654 78775 48999999999997 5555554


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC-CceeecCCCCCCCC--CcCCcccc-ceeeeeee
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-MDVLCTHPMFGPES--GQNGWKDF-AFVYEKVR  149 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~-~~~v~~hP~~g~~~--~~~~~~g~-~~~~~~~~  149 (275)
                       ++ +.  ++++ ++++++.......+.+.+.+..+ ....+.+ .++++.  ..+.+... .++++|..
T Consensus       220 ~~~~~~--mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglD-v~~~EP~~~~~L~~~~~nviltPh~  285 (333)
T 2d0i_A          220 EERVKK--LEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATD-VFEKEPVREHELFKYEWETVLTPHY  285 (333)
T ss_dssp             HHHHHH--TBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEES-CCSSSSCSCCGGGGCTTTEEECCSC
T ss_pred             HHHHhh--CCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEec-CCCCCCCCCchHHcCCCCEEEcCcc
Confidence             22 44  7889 99998754322222333333322 2223333 233221  12344444 57777754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.26  E-value=2e-11  Score=109.76  Aligned_cols=136  Identities=13%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|+||+++|+.++..|++|++|||++. ...+.+.|+....+++++ ++++|+|++++|.. .+..++.
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~el-l~~aDvV~l~~Plt~~t~~li~  266 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDM-YPVCDVVTLNCPLHPETEHMIN  266 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHH-GGGCSEEEECSCCCTTTTTCBS
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHH-HhcCCEEEEecCCchHHHHHhh
Confidence            45778999999999999999999999999999999873 445566687766688886 58999999999964 3445552


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCCCcCCccccceeeeeee
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPESGQNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~  149 (275)
                       +. ..  ++++.++++++.......+.+.+.+..+      ..+...+|+...   .+.+....++++|..
T Consensus       267 ~~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~pL~~~~nvilTPHi  333 (393)
T 2nac_A          267 DETLKL--FKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKD---HPWRTMPYNGMTPHI  333 (393)
T ss_dssp             HHHHTT--SCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTT---CGGGTSTTBCCCCSC
T ss_pred             HHHHhh--CCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCC---ChhHcCCCEEECCCC
Confidence             23 44  7899999999864332223444444332      123344554211   123444456677653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.25  E-value=2.8e-11  Score=107.11  Aligned_cols=138  Identities=14%  Similarity=0.181  Sum_probs=89.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|+||+++|+.++..|++|++|||++...... .|.....+++++ ++++|+|++++|.. .+..++. 
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~g~~~~~~l~el-l~~sDvV~l~~Plt~~T~~li~~  247 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-EGAIYHDTLDSL-LGASDIFLIAAPGRPELKGFLDH  247 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-TTCEECSSHHHH-HHTCSEEEECSCCCGGGTTCBCH
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-cCCeEeCCHHHH-HhhCCEEEEecCCCHHHHHHhCH
Confidence            4567899999999999999999999999999999987322112 277776789996 58999999999953 3444432 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCC--CcCCccccceeeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES--GQNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~--~~~~~~g~~~~~~~~~  149 (275)
                      +. ..  ++++.++++++.......+.+.+.+..+.-.-.+..++..|.  ..+.+.-..++++|..
T Consensus       248 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHi  312 (345)
T 4g2n_A          248 DRIAK--IPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHI  312 (345)
T ss_dssp             HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSC
T ss_pred             HHHhh--CCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCcc
Confidence            22 34  789999999986544333445444433221111223333332  1123333447777754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.23  E-value=1.4e-11  Score=108.90  Aligned_cols=94  Identities=18%  Similarity=0.293  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|.||+.+|+.|+..|++|++|||++....+.+.|+.. .+++++ ++++|+|++|+|... +..++. 
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~~~-l~~aDvVil~vp~~~~t~~~i~~  224 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEF-KPLEDL-LRESDFVVLAVPLTRETYHLINE  224 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEE-CCHHHH-HHHCSEEEECCCCCTTTTTCBCH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCccc-CCHHHH-HhhCCEEEECCCCChHHHHhhCH
Confidence            4567899999999999999999999999999999998544445567765 478775 489999999999875 444542 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      ++ +.  +++++++++++...
T Consensus       225 ~~~~~--mk~~ailIn~srg~  243 (334)
T 2dbq_A          225 ERLKL--MKKTAILINIARGK  243 (334)
T ss_dssp             HHHHH--SCTTCEEEECSCGG
T ss_pred             HHHhc--CCCCcEEEECCCCc
Confidence            33 44  78899999987543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.23  E-value=1.5e-11  Score=108.53  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~   85 (275)
                      ....++|||||+|.||+.+|+.|+..|++|++|||++. .+.+.+.|+... +++++ ++++|+|++++|... +..++.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~-l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPEL-AAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHH-HHHCSEEEECCCCCTTTTTCBS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHH-HhhCCEEEEeCCCChHHHHhhC
Confidence            45678999999999999999999999999999999874 444555677665 78885 489999999999853 344442


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHh
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQ  114 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~  114 (275)
                       ++ +.  ++++.+++++++.+....+.+.+
T Consensus       230 ~~~~~~--mk~gailIn~srg~~v~~~aL~~  258 (330)
T 2gcg_A          230 KDFFQK--MKETAVFINISRGDVVNQDDLYQ  258 (330)
T ss_dssp             HHHHHH--SCTTCEEEECSCGGGBCHHHHHH
T ss_pred             HHHHhc--CCCCcEEEECCCCcccCHHHHHH
Confidence             23 44  78899999998765432333333

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.23  E-value=1.6e-11  Score=107.40  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++....     +. ..+++++ ++++|+|++++|.. .+..++. 
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~-~~~l~el-l~~aDvV~l~~p~~~~t~~li~~  213 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----YP-FLSLEEL-LKEADVVSLHTPLTPETHRLLNR  213 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----SC-BCCHHHH-HHHCSEEEECCCCCTTTTTCBCH
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----cc-cCCHHHH-HhhCCEEEEeCCCChHHHhhcCH
Confidence            45678999999999999999999999999999999874321     22 3577785 58999999999986 3555553 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC-----CceeecCCCCCCCCCcCCccccceeeeeeec
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-----MDVLCTHPMFGPESGQNGWKDFAFVYEKVRI  150 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~-----~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~  150 (275)
                      +. ..  ++++.+++|+++......+.+.+.+...     ..+...+|+...   .+.+....++++|...
T Consensus       214 ~~l~~--mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~---~~L~~~~nviltPh~~  279 (311)
T 2cuk_A          214 ERLFA--MKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPG---HPLYALPNAVITPHIG  279 (311)
T ss_dssp             HHHTT--SCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTT---SGGGGCTTEEECCSCT
T ss_pred             HHHhh--CCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCC---ChhhhCCCEEECCcCC
Confidence            23 44  8899999999875432223444444311     134455665322   2345666788887643

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.22  E-value=2.3e-11  Score=105.98  Aligned_cols=90  Identities=13%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++. ..    +.....+++++ ++++|+|++++|.. .+..++. 
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~----~~~~~~~l~el-l~~aDvV~l~~P~~~~t~~~i~~  194 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG----PWRFTNSLEEA-LREARAAVCALPLNKHTRGLVKY  194 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS----SSCCBSCSHHH-HTTCSEEEECCCCSTTTTTCBCH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc----CcccCCCHHHH-HhhCCEEEEeCcCchHHHHHhCH
Confidence            45678999999999999999999999999999999875 21    34344577885 58999999999986 3555553 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      +. +.  ++++.+++|+++..
T Consensus       195 ~~l~~--mk~gailin~srg~  213 (303)
T 1qp8_A          195 QHLAL--MAEDAVFVNVGRAE  213 (303)
T ss_dssp             HHHTT--SCTTCEEEECSCGG
T ss_pred             HHHhh--CCCCCEEEECCCCc
Confidence            33 55  88999999998744

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.21  E-value=8e-11  Score=106.67  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=73.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH-CCCeEEEEc---CChh-hhHH-HHcC------------c-------eEecChHHHhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK-QGHILRATS---RTDH-SQLC-HRSG------------I-------SFFSDKRAFLE   65 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~-~g~~V~~~d---r~~~-~~~a-~~~g------------~-------~~~~~~~~~~~   65 (275)
                      +|||+|||+|.||+++|..|++ +|++|++|+   |+++ .+.. .+.|            .       ..+++++++ +
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~   80 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA-I   80 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH-H
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH-h
Confidence            4799999999999999999988 599999999   7653 2322 2222            1       145677775 4


Q ss_pred             cCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCCh
Q 023897           66 ADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        66 ~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~  106 (275)
                      .++|+||+|||.....++++++ +.  ++++++|++..+.++
T Consensus        81 ~~aD~Vilav~~~~~~~v~~~l~~~--l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           81 SGADVVILTVPAFAHEGYFQAMAPY--VQDSALIVGLPSQAG  120 (404)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTT--CCTTCEEEETTCCTT
T ss_pred             CCCCEEEEeCchHHHHHHHHHHHhh--CCCCcEEEEcCCCcc
Confidence            7999999999999999999999 77  888999988655555

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.21  E-value=1.1e-10  Score=103.94  Aligned_cols=137  Identities=14%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.++..|++|++|||+.....+...|+.. .+++++ ++++|+|++++|.. .+..++. 
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~el-l~~aDvV~l~~Plt~~T~~li~~  250 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEP-ASLEDV-LTKSDFIFVVAAVTSENKRFLGA  250 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEE-CCHHHH-HHSCSEEEECSCSSCC---CCCH
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeee-CCHHHH-HhcCCEEEEcCcCCHHHHhhcCH
Confidence            4567899999999999999999999999999999986544556677765 578886 58999999999975 3444442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC---cCCccccceeeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG---QNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~---~~~~~g~~~~~~~~~  149 (275)
                      +. ..  ++++.++++++.......+.+.+.+..+.-. .+.-++.+|.-   .+.+....++++|..
T Consensus       251 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHi  315 (365)
T 4hy3_A          251 EAFSS--MRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHR  315 (365)
T ss_dssp             HHHHT--SCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSC
T ss_pred             HHHhc--CCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcc
Confidence            22 44  7899999999865433334455544433211 22334433321   122333446666653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.18  E-value=3.4e-11  Score=105.77  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=87.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++......... ....+++++ ++++|+|++++|.. .+..++. 
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~l~el-l~~aDvV~l~lPlt~~t~~li~~  211 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHET-VAFTATADA-LATANFIVNALPLTPTTHHLFST  211 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEE-EEGGGCHHH-HHHCSEEEECCCCCGGGTTCBSH
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhc-cccCCHHHH-HhhCCEEEEcCCCchHHHHhcCH
Confidence            4567899999999999999999999999999999987421111111 223567775 58999999999953 4444442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC---cCCccccceeeeeee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG---QNGWKDFAFVYEKVR  149 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~---~~~~~g~~~~~~~~~  149 (275)
                      +. ..  ++++.+++|++.......+.+.+.+..+.-.-....++.+|.-   .+.+....++++|..
T Consensus       212 ~~l~~--mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHi  277 (324)
T 3evt_A          212 ELFQQ--TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHI  277 (324)
T ss_dssp             HHHHT--CCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSC
T ss_pred             HHHhc--CCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCcc
Confidence            22 44  7899999999875543344555544333211112344444421   123444456777653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.17  E-value=3.8e-11  Score=105.83  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~   85 (275)
                      ....++|||||+|+||+++|+.|+..|++|++|||++ ....+...|+... +++++ ++++|+|++++|.. .+..++.
T Consensus       142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~el-l~~aDvV~l~~P~t~~t~~li~  219 (330)
T 4e5n_A          142 GLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSEL-FASSDFILLALPLNADTLHLVN  219 (330)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHH-HHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHH-HhhCCEEEEcCCCCHHHHHHhC
Confidence            4567899999999999999999999999999999997 4445556677654 78886 58999999999964 3444442


Q ss_pred             -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                       +. ..  ++++.+++|++.......+.+.+.+
T Consensus       220 ~~~l~~--mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          220 AELLAL--VRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             HHHHTT--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHHhh--CCCCcEEEECCCCchhCHHHHHHHH
Confidence             23 44  7899999999865543334444444

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.17  E-value=6.7e-11  Score=103.76  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++....... +.....+++++ ++++|+|++++|.. .+..++. 
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~~~~~~l~el-l~~aDvV~l~lPlt~~T~~li~~  214 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD-QVYQLPALNKM-LAQADVIVSVLPATRETHHLFTA  214 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS-EEECGGGHHHH-HHTCSEEEECCCCCSSSTTSBCT
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh-cccccCCHHHH-HhhCCEEEEeCCCCHHHHHHhHH
Confidence            45678999999999999999999999999999999873211111 11223578886 58999999999964 4455553 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +. ..  +++|.+++|++.......+.+.+.+.
T Consensus       215 ~~l~~--mk~gailIN~aRG~~vde~aL~~aL~  245 (324)
T 3hg7_A          215 SRFEH--CKPGAILFNVGRGNAINEGDLLTALR  245 (324)
T ss_dssp             TTTTC--SCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHHhc--CCCCcEEEECCCchhhCHHHHHHHHH
Confidence            22 44  89999999998655433344544443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.14  E-value=1.2e-10  Score=101.81  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=74.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE---ecChHHHhccCCCEEEEecCch-hHHHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF---FSDKRAFLEADNDVILISTSIL-SLSEV   83 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~---~~~~~~~~~~~aD~iilavp~~-~~~~v   83 (275)
                      ....++|||||+|.||+++|+.|+..|++|++|||++...    .++..   ..+++++ ++++|+|++++|.. .+..+
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~~~~~l~el-l~~aDiV~l~~Plt~~t~~l  210 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSW----PGVESYVGREELRAF-LNQTRVLINLLPNTAQTVGI  210 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCC----TTCEEEESHHHHHHH-HHTCSEEEECCCCCGGGTTC
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhh----hhhhhhcccCCHHHH-HhhCCEEEEecCCchhhhhh
Confidence            4567899999999999999999999999999999987421    12211   1467786 58999999999953 45555


Q ss_pred             h-hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           84 L-NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        84 ~-~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      + .+. ..  ++++.++++++.......+.+.+.+
T Consensus       211 i~~~~l~~--mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          211 INSELLDQ--LPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             BSHHHHTT--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             ccHHHHhh--CCCCCEEEECCCChhhhHHHHHHHH
Confidence            5 233 44  8899999999865443334444444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.10  E-value=3.2e-10  Score=102.30  Aligned_cols=106  Identities=15%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|+||+.+|+.+...|++|++||+++....   .+.....+++++ +++||+|++++|... +..++. 
T Consensus       153 el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~---~~~~~~~sl~el-l~~aDvV~lhvPlt~~T~~li~~  228 (416)
T 3k5p_A          153 EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY---GNVKPAASLDEL-LKTSDVVSLHVPSSKSTSKLITE  228 (416)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB---TTBEECSSHHHH-HHHCSEEEECCCC-----CCBCH
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc---cCcEecCCHHHH-HhhCCEEEEeCCCCHHHhhhcCH
Confidence            45678999999999999999999999999999999864211   133455788886 589999999999743 444442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE  119 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~  119 (275)
                      +. ..  +++|.++++++.......+.+.+.+..+
T Consensus       229 ~~l~~--mk~gailIN~aRG~vvd~~aL~~aL~~g  261 (416)
T 3k5p_A          229 AKLRK--MKKGAFLINNARGSDVDLEALAKVLQEG  261 (416)
T ss_dssp             HHHHH--SCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             HHHhh--CCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence            22 33  7899999999865543344555555433

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.10  E-value=1.3e-10  Score=100.06  Aligned_cols=116  Identities=15%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ...++|+|||+|.||++++..|.+.|++|++++|+++.  ..+.+.|+...+++++. ++++|+||.|||.....++...
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~-~~~aDiVi~atp~~~~~~~~~~  205 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEV-IDKVQVIVNTTSVGLKDEDPEI  205 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGT-GGGCSEEEECSSTTSSTTCCCS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhh-hcCCCEEEEeCCCCCCCCCCCC
Confidence            34579999999999999999999999999999999853  33444566666577775 4899999999998764322122


Q ss_pred             CCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCC
Q 023897           87 LPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM  128 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~  128 (275)
                      ++...++++.+++|++..+....+..++   .+.++++++||
T Consensus       206 i~~~~l~~g~~viDv~~~~t~ll~~a~~---~g~~~v~g~~m  244 (275)
T 2hk9_A          206 FNYDLIKKDHVVVDIIYKETKLLKKAKE---KGAKLLDGLPM  244 (275)
T ss_dssp             SCGGGCCTTSEEEESSSSCCHHHHHHHH---TTCEEECSHHH
T ss_pred             CCHHHcCCCCEEEEcCCChHHHHHHHHH---CcCEEECCHHH
Confidence            2111267899999998844444444433   34566665554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.09  E-value=2.3e-10  Score=103.39  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|+||+.+|+.+...|++|++|||++....   .++....+++++ +++||+|++++|.. .+..++. 
T Consensus       142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~l~el-l~~aDvV~l~~P~t~~t~~li~~  217 (404)
T 1sc6_A          142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL---GNATQVQHLSDL-LNMSDVVSLHVPENPSTKNMMGA  217 (404)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC---TTCEECSCHHHH-HHHCSEEEECCCSSTTTTTCBCH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc---CCceecCCHHHH-HhcCCEEEEccCCChHHHHHhhH
Confidence            45778999999999999999999999999999999864211   135555688886 58999999999985 3444442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC------CceeecCCCCCCCC-CcCCccccceeeeeeec
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE------MDVLCTHPMFGPES-GQNGWKDFAFVYEKVRI  150 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~------~~~v~~hP~~g~~~-~~~~~~g~~~~~~~~~~  150 (275)
                      +. ..  +++|.++++++.......+.+.+.+..+      ..+...+|+.+.+. ..+.+....++++|..+
T Consensus       218 ~~l~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~  288 (404)
T 1sc6_A          218 KEISL--MKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG  288 (404)
T ss_dssp             HHHHH--SCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCS
T ss_pred             HHHhh--cCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCC
Confidence            22 44  7899999999865432233444444332      23456677654321 11234444577777643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.08  E-value=1.8e-10  Score=102.89  Aligned_cols=107  Identities=11%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHH
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEV   83 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v   83 (275)
                      .....++|||||+|+||+++|+.|+..|++ |++|||++. ...+.+.|+....+++++ ++++|+|++++|.. .+..+
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~~P~t~~t~~l  238 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEEL-VAQADIVTVNAPLHAGTKGL  238 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHH-HHTCSEEEECCCCSTTTTTC
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHH-HhcCCEEEECCCCChHHHHH
Confidence            356778999999999999999999999997 999999873 445566787766688886 58999999999985 34444


Q ss_pred             hh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           84 LN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        84 ~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +. +. +.  ++++.++++++.......+.+.+.+
T Consensus       239 i~~~~l~~--mk~ga~lIn~arG~~vd~~aL~~aL  271 (364)
T 2j6i_A          239 INKELLSK--FKKGAWLVNTARGAICVAEDVAAAL  271 (364)
T ss_dssp             BCHHHHTT--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCHHHHhh--CCCCCEEEECCCCchhCHHHHHHHH
Confidence            42 22 44  7899999999864432233444443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.08  E-value=7.2e-10  Score=102.26  Aligned_cols=173  Identities=12%  Similarity=0.031  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH-H-HHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL-S-EVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~-~-~v~   84 (275)
                      ....++|+|||+|.||..+|+.++..|.+|+++|+++. ...+.+.|+.. .+++++ +.++|+||.|++...+ . +.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~-l~~aDvVi~atgt~~~i~~~~l  348 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEA-IGDADIVVTATGNKDIIMLEHI  348 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHH-GGGCSEEEECSSSSCSBCHHHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHH-HhCCCEEEECCCCHHHHHHHHH
Confidence            34568999999999999999999999999999999985 45677788864 467775 5899999999986642 1 233


Q ss_pred             hcCCCCCCCCCcEEEeCCCCChhH-HHHHHh-hCCCCCceeec-----CCCCCCCCCcCCcccccee---eeeeec--CC
Q 023897           85 NSLPVHCLQRRTLIADVLSVKEYP-RNVLLQ-VLPEEMDVLCT-----HPMFGPESGQNGWKDFAFV---YEKVRI--RD  152 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~~~-~~~l~~-~l~~~~~~v~~-----hP~~g~~~~~~~~~g~~~~---~~~~~~--~~  152 (275)
                         ..  ++++.++++++..+..+ ...+.. .+.. ..+.+.     .|-++... .-...+....   .++...  .+
T Consensus       349 ---~~--mk~ggilvnvG~~~~eId~~aL~~~aL~~-~~I~~~ldv~~~~~~~~~l-~LL~~grlvnL~~~TPH~a~~~~  421 (494)
T 3ce6_A          349 ---KA--MKDHAILGNIGHFDNEIDMAGLERSGATR-VNVKPQVDLWTFGDTGRSI-IVLSEGRLLNLGNATGHPSFVMS  421 (494)
T ss_dssp             ---HH--SCTTCEEEECSSSGGGBCHHHHHHTTCEE-EEEETTEEEEECTTTCCEE-EEEGGGSCHHHHHSCCSCHHHHH
T ss_pred             ---Hh--cCCCcEEEEeCCCCCccCHHHHHHhhhcc-ceEEEEEEEeecCCcchHH-HHHhCCCEEeccCCCCCccccch
Confidence               33  67889999998765421 233333 2211 011111     11111100 0001222111   111110  00


Q ss_pred             ----hHHHHHHHHHHH--HcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897          153 ----EATCSSFLRIFE--SEGCKMLEMSCEEHDKVAAKSQFLTHT  191 (275)
Q Consensus       153 ----~~~~~~~~~l~~--~~G~~v~~~~~~~hD~~~a~~~~lp~~  191 (275)
                          .+..+.++.+.+  ..+..+ ++.|++||..+|.+ ||||+
T Consensus       422 ~s~~~qa~~ai~~~~~g~~~~~~V-~~~P~~~De~vA~l-hL~~l  464 (494)
T 3ce6_A          422 NSFANQTIAQIELWTKNDEYDNEV-YRLPKHLDEKVARI-HVEAL  464 (494)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCCSSE-ECCCHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEE-EECHHHHHHHHHHh-hHHHH
Confidence                223444555554  456555 66899999999998 99997

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.01  E-value=2.4e-09  Score=82.45  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             CCCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ...+|+|||+    |.||..+++.|.+.|++|+.++++.+.    -.|...+.+++++ .+..|++++++|++...++++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el-~~~vDlvii~vp~~~v~~v~~   87 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVREL-PKDVDVIVFVVPPKVGLQVAK   87 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGS-CTTCCEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHh-CCCCCEEEEEeCHHHHHHHHH
Confidence            4568999999    999999999999999997777665421    1578888899885 578999999999999999998


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      ++ .   ...+.++++.++......+..++.   +.++++
T Consensus        88 ~~~~---~g~~~i~~~~~~~~~~l~~~a~~~---Gi~~ig  121 (138)
T 1y81_A           88 EAVE---AGFKKLWFQPGAESEEIRRFLEKA---GVEYSF  121 (138)
T ss_dssp             HHHH---TTCCEEEECTTSCCHHHHHHHHHH---TCEEEC
T ss_pred             HHHH---cCCCEEEEcCccHHHHHHHHHHHC---CCEEEc
Confidence            87 4   345678888776655444444432   466765

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.97  E-value=3.6e-10  Score=99.87  Aligned_cols=103  Identities=15%  Similarity=0.284  Sum_probs=74.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.++..|++|++|||++...  .+.+... .+++++ ++++|+|++++|.. .+..++. 
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~-~~l~el-l~~aDvV~l~~Plt~~t~~li~~  220 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--FEPFLTY-TDFDTV-LKEADIVSLHTPLFPSTENMIGE  220 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--GTTTCEE-CCHHHH-HHHCSEEEECCCCCTTTTTCBCH
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--hhccccc-cCHHHH-HhcCCEEEEcCCCCHHHHHHhhH
Confidence            3456899999999999999999999999999999987431  2223444 388886 58999999999963 3333332 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +. ..  ++++.+++|++.......+.+.+.+
T Consensus       221 ~~l~~--mk~gailIN~aRg~~vd~~aL~~aL  250 (343)
T 2yq5_A          221 KQLKE--MKKSAYLINCARGELVDTGALIKAL  250 (343)
T ss_dssp             HHHHH--SCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHhh--CCCCcEEEECCCChhhhHHHHHHHH
Confidence            12 33  7899999999875543334444443

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.92  E-value=7e-10  Score=97.91  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|.||+++|+.++..|++|++|||++... +.+ .+....+++++ ++++|+|++++|... +..++. 
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~el-l~~aDvV~l~~p~~~~t~~li~~  219 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDL-YKQADVISLHVPDVPANVHMIND  219 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHH-HHHCSEEEECSCCCGGGTTCBSH
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHH-HhhCCEEEEcCCCcHHHHHHHhH
Confidence            3456899999999999999999999999999999987533 222 24444478886 589999999999643 444442 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +. ..  ++++.++++++.......+.+.+.+
T Consensus       220 ~~l~~--mk~ga~lIn~arg~~vd~~aL~~aL  249 (333)
T 1j4a_A          220 ESIAK--MKQDVVIVNVSRGPLVDTDAVIRGL  249 (333)
T ss_dssp             HHHHH--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHhh--CCCCcEEEECCCCcccCHHHHHHHH
Confidence            22 33  7889999999875433334444444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.92  E-value=1.5e-09  Score=92.60  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .... +|+|||+|.||.+++..|.+.|++|++++|+++.  ..+.+.|.. ..++++ + .++|+||+|+|......+-.
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~-~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEK-A-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGG-G-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhh-c-cCCCEEEEccCCCCCCCCCC
Confidence            3456 8999999999999999999999999999999843  344455655 456766 4 78999999999875322111


Q ss_pred             cCCCCCCCCCcEEEeCCCCChh--HHHHHHhhCCCCCceeecCCC
Q 023897           86 SLPVHCLQRRTLIADVLSVKEY--PRNVLLQVLPEEMDVLCTHPM  128 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~k~~--~~~~l~~~l~~~~~~v~~hP~  128 (275)
                      .++...++++.+++|++.....  ..+..++   .+.+++++++|
T Consensus       190 ~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~---~g~~~v~g~~m  231 (263)
T 2d5c_A          190 PLPAELFPEEGAAVDLVYRPLWTRFLREAKA---KGLKVQTGLPM  231 (263)
T ss_dssp             SSCGGGSCSSSEEEESCCSSSSCHHHHHHHH---TTCEEECSHHH
T ss_pred             CCCHHHcCCCCEEEEeecCCcccHHHHHHHH---CcCEEECcHHH
Confidence            1211116788999998865322  2233322   24566655544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.90  E-value=3.2e-09  Score=92.93  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CC-eEEEEcCChhh--hHHHHcC--ceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GH-ILRATSRTDHS--QLCHRSG--ISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~-~V~~~dr~~~~--~~a~~~g--~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ...++|+|||+|.||.+++..|.+. |+ +|.+|||+++.  ..+.+.+  +....+++++ ++++|+|++|||..  ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~-v~~aDiVi~atp~~--~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEA-VAGADVIITVTLAT--EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHH-HTTCSEEEECCCCS--SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHH-HhcCCEEEEEeCCC--Cc
Confidence            3467999999999999999999876 76 89999999853  3444546  6777888886 48999999999952  23


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           83 VLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      ++.. +.  +++|++++|+++...
T Consensus       210 v~~~-~~--l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          210 ILFG-EW--VKPGAHINAVGASRP  230 (312)
T ss_dssp             CBCG-GG--SCTTCEEEECCCCST
T ss_pred             ccCH-HH--cCCCcEEEeCCCCCC
Confidence            3321 23  788999999876544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.89  E-value=6.8e-09  Score=90.98  Aligned_cols=111  Identities=18%  Similarity=0.085  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-hH-H----HH-------cCceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-QL-C----HR-------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~~-a----~~-------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..|||+|||+|.||+++|..|+.+|+ +|++||++++. +. +    ..       ..+..+++. ++ ++++|+||+|+
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a-~~~aDiVi~av   80 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-AD-ISGSDVVIITA   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GG-GTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH-hCCCCEEEEeC
Confidence            35799999999999999999999998 99999998742 21 1    10       123445677 43 48999999999


Q ss_pred             --------------Cc--hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeec
Q 023897           76 --------------SI--LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCT  125 (275)
Q Consensus        76 --------------p~--~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~  125 (275)
                                    +.  +...++++.+ ++  . ++++++.+++.-......+.+..+. ..++++.
T Consensus        81 g~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~--~-~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           81 SIPGRPKDDRSELLFGNARILDSVAEGVKKY--C-PNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             CCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH--C-TTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH--C-CCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence                          32  3356778887 54  3 5788876665433334455554321 2356654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.88  E-value=1.1e-09  Score=96.70  Aligned_cols=104  Identities=14%  Similarity=0.210  Sum_probs=75.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~-   85 (275)
                      ....++|||||+|.||+.+|+.++..|++|++|||++... +. ..+. ..+++++ ++++|+|++++|... +..++. 
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~-~~~l~el-l~~aDvV~~~~P~~~~t~~li~~  217 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-DH-PDFD-YVSLEDL-FKQSDVIDLHVPGIEQNTHIINE  217 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-CC-TTCE-ECCHHHH-HHHCSEEEECCCCCGGGTTSBCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hccc-cCCHHHH-HhcCCEEEEcCCCchhHHHHhCH
Confidence            4566899999999999999999999999999999987432 11 1233 3478886 589999999999753 333332 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +. ..  ++++.++++++.......+.+.+.+.
T Consensus       218 ~~l~~--mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          218 AAFNL--MKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             HHHHH--SCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             HHHhh--CCCCcEEEECCCCcccCHHHHHHHHH
Confidence            22 34  78899999998754433344555443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.86  E-value=5.8e-09  Score=80.64  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .++|+|||+|.||..++..|.+.|++|++++|+++.  ..+.+.|..  ...+..++ +.++|+||.|+|....  ++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~Divi~at~~~~~--~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSL-IKNNDVIITATSSKTP--IVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHH-HHTCSEEEECSCCSSC--SBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHH-hcCCCEEEEeCCCCCc--EeeH
Confidence            579999999999999999999999999999999853  345566654  45677775 4899999999997621  1111


Q ss_pred             CCCCCCCCCcEEEeCC
Q 023897           87 LPVHCLQRRTLIADVL  102 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~  102 (275)
                       ..  ++++.+++|++
T Consensus        98 -~~--l~~g~~vid~~  110 (144)
T 3oj0_A           98 -RS--LMPGKLFIDLG  110 (144)
T ss_dssp             -GG--CCTTCEEEECC
T ss_pred             -HH--cCCCCEEEEcc
Confidence             23  67788888876

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.85  E-value=6.1e-09  Score=80.86  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             CCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ..+|+|||+    |.||..+++.|.+.|++|+.++++....  .-.|...+.+++++ ....|++++++|+..+.+++++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~--~i~G~~~~~sl~el-~~~~Dlvii~vp~~~v~~v~~~   89 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGK--TLLGQQGYATLADV-PEKVDMVDVFRNSEAAWGVAQE   89 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTS--EETTEECCSSTTTC-SSCCSEEECCSCSTHHHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccc--ccCCeeccCCHHHc-CCCCCEEEEEeCHHHHHHHHHH
Confidence            468999999    8999999999999999977777664101  11477888888884 5789999999999999999988


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      + .   ...+.++++.++......+..+   ..+.++++
T Consensus        90 ~~~---~g~~~i~i~~~~~~~~l~~~a~---~~Gi~~ig  122 (145)
T 2duw_A           90 AIA---IGAKTLWLQLGVINEQAAVLAR---EAGLSVVM  122 (145)
T ss_dssp             HHH---HTCCEEECCTTCCCHHHHHHHH---TTTCEEEC
T ss_pred             HHH---cCCCEEEEcCChHHHHHHHHHH---HcCCEEEc
Confidence            7 4   3445688877665444433333   34577775

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.85  E-value=1.2e-08  Score=88.80  Aligned_cols=92  Identities=18%  Similarity=0.298  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE--ecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF--FSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ....++|+|||+|.||..+++.|+..|.+|++|||+++. ....+.|+..  ..+++++ ++++|+|++++|...+.+- 
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~-l~~aDvVi~~~p~~~i~~~-  231 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEH-VKDIDICINTIPSMILNQT-  231 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHH-STTCSEEEECCSSCCBCHH-
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHH-hhCCCEEEECCChhhhCHH-
Confidence            456789999999999999999999999999999999853 3344557653  2567775 5899999999998543211 


Q ss_pred             hcCCCCCCCCCcEEEeCCCC
Q 023897           85 NSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~  104 (275)
                       .+..  ++++.+++|++..
T Consensus       232 -~~~~--mk~g~~lin~a~g  248 (300)
T 2rir_A          232 -VLSS--MTPKTLILDLASR  248 (300)
T ss_dssp             -HHTT--SCTTCEEEECSST
T ss_pred             -HHHh--CCCCCEEEEEeCC
Confidence             1133  7888999998853

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.84  E-value=4.3e-09  Score=93.92  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~v   83 (275)
                      ...++|||||+|+||+.+|+.|+..|++|.+||++....   ..+. ...+++++ +++||+|++++|...     +..+
T Consensus       117 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~---~~~~-~~~sl~el-l~~aDiV~l~~Plt~~g~~~T~~l  191 (381)
T 3oet_A          117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR---GDEG-DFRTLDEL-VQEADVLTFHTPLYKDGPYKTLHL  191 (381)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT---TCCS-CBCCHHHH-HHHCSEEEECCCCCCSSTTCCTTS
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh---ccCc-ccCCHHHH-HhhCCEEEEcCcCCccccccchhh
Confidence            456899999999999999999999999999999864321   1222 34678886 589999999999542     2333


Q ss_pred             hh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           84 LN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        84 ~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +. +. ..  +++|.+++|++.......+.+.+.+
T Consensus       192 i~~~~l~~--mk~gailIN~aRG~vvde~aL~~aL  224 (381)
T 3oet_A          192 ADETLIRR--LKPGAILINACRGPVVDNAALLARL  224 (381)
T ss_dssp             BCHHHHHH--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             cCHHHHhc--CCCCcEEEECCCCcccCHHHHHHHH
Confidence            32 12 33  7889999998864432234444444

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.84  E-value=1.7e-08  Score=88.11  Aligned_cols=86  Identities=23%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh--hHHHHc---------CceE-ecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS--QLCHRS---------GISF-FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~--~~a~~~---------g~~~-~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+|.||+++|..|.++|  ++|++||++++.  ..+.+.         .+.. +++. ++ ++++|+||+|+|.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~-~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AA-LADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH-hCCCCEEEEecCC
Confidence            79999999999999999999999  799999999742  222111         2343 4666 43 4899999999997


Q ss_pred             hh--------------------HHHHhhcC-CCCCCCCCcEEEeCC
Q 023897           78 LS--------------------LSEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        78 ~~--------------------~~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      ..                    +.++++.+ ++  . ++.+++.++
T Consensus        80 ~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~--~-~~~~ii~~t  122 (309)
T 1hyh_A           80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES--G-FHGVLVVIS  122 (309)
T ss_dssp             GGGTC-------CTTHHHHHHHHHHHHHHHHHT--T-CCSEEEECS
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--C-CCcEEEEEc
Confidence            55                    46777777 54  3 455555444

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.83  E-value=1.3e-08  Score=88.13  Aligned_cols=90  Identities=20%  Similarity=0.309  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe--cChHHHhccCCCEEEEecCchhH-HHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF--SDKRAFLEADNDVILISTSILSL-SEV   83 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~-~~v   83 (275)
                      ....++|+|||+|.||..+++.|+..|.+|++|||+++ ...+.+.|+...  .+++++ +.++|+|++++|...+ .+.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~-l~~aDvVi~~~p~~~i~~~~  230 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQE-LRDVDVCINTIPALVVTANV  230 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHH-TTTCSEEEECCSSCCBCHHH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHH-hcCCCEEEECCChHHhCHHH
Confidence            45678999999999999999999999999999999985 344455677543  466775 5899999999997543 222


Q ss_pred             hhcCCCCCCCCCcEEEeCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.   .  ++++.+++|++.
T Consensus       231 l~---~--mk~~~~lin~ar  245 (293)
T 3d4o_A          231 LA---E--MPSHTFVIDLAS  245 (293)
T ss_dssp             HH---H--SCTTCEEEECSS
T ss_pred             HH---h--cCCCCEEEEecC
Confidence            22   2  678899999885

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.82  E-value=3.5e-09  Score=94.63  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~   82 (275)
                      ....++|||||+|+||+++|+.|+..|++|++||+++...   ..|.. ..+++++ ++++|+|++++|...     +..
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~g~~-~~~l~el-l~~aDvV~l~~Plt~~g~~~T~~  187 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---EPDGE-FVSLERL-LAEADVISLHTPLNRDGEHPTRH  187 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---STTSC-CCCHHHH-HHHCSEEEECCCCCSSSSSCCTT
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---ccCcc-cCCHHHH-HHhCCEEEEeccCccccccchhh
Confidence            3456899999999999999999999999999999876321   23433 3578886 589999999999754     333


Q ss_pred             Hhh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           83 VLN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        83 v~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      ++. +. ..  +++|.++++++.......+.+.+.+
T Consensus       188 li~~~~l~~--mk~gailIN~sRG~vvd~~aL~~aL  221 (380)
T 2o4c_A          188 LLDEPRLAA--LRPGTWLVNASRGAVVDNQALRRLL  221 (380)
T ss_dssp             SBCHHHHHT--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hcCHHHHhh--CCCCcEEEECCCCcccCHHHHHHHH
Confidence            432 22 44  7889999999865432334444444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.82  E-value=1.5e-08  Score=74.90  Aligned_cols=99  Identities=11%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-hhHHHHcCceEe-------cChHHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-SQLCHRSGISFF-------SDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      .+++|+|+|+|.||..++..|.+.| ++|++++|++. .......++...       .+..+. +.++|+||.|+|....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKA-LGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHH-TTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHH-HcCCCEEEECCCchhh
Confidence            3578999999999999999999999 89999999985 333334454321       123343 4789999999998877


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHh
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQ  114 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~  114 (275)
                      ..++...    ...+...+|+++. ....+.+.+
T Consensus        83 ~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~  111 (118)
T 3ic5_A           83 PIIAKAA----KAAGAHYFDLTED-VAATNAVRA  111 (118)
T ss_dssp             HHHHHHH----HHTTCEEECCCSC-HHHHHHHHH
T ss_pred             HHHHHHH----HHhCCCEEEecCc-HHHHHHHHH
Confidence            7776665    3346677887653 234444443

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.81  E-value=2.5e-09  Score=94.34  Aligned_cols=103  Identities=10%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~-   85 (275)
                      ....++|||||+|.||+.+|+.++..|++|++|||++... + +.++. ..+++++ ++++|+|++++|.. .+..++. 
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~~~~~-~~~l~el-l~~aDvV~~~~p~t~~t~~li~~  218 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG-I-EDYCT-QVSLDEV-LEKSDIITIHAPYIKENGAVVTR  218 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS-C-TTTCE-ECCHHHH-HHHCSEEEECCCCCTTTCCSBCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH-H-Hhccc-cCCHHHH-HhhCCEEEEecCCchHHHHHhCH
Confidence            3466899999999999999999999999999999987432 1 12233 3478886 58999999999974 3333332 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +. ..  ++++.+++|++.......+.+.+.+
T Consensus       219 ~~l~~--mk~ga~lin~srg~~vd~~aL~~aL  248 (331)
T 1xdw_A          219 DFLKK--MKDGAILVNCARGQLVDTEAVIEAV  248 (331)
T ss_dssp             HHHHT--SCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHhh--CCCCcEEEECCCcccccHHHHHHHH
Confidence            22 44  7889999999864332233444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.80  E-value=2.3e-08  Score=76.15  Aligned_cols=92  Identities=17%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-HcCceE-ec---ChHH---HhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-RSGISF-FS---DKRA---FLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-~~g~~~-~~---~~~~---~~~~~aD~iilavp~~~~   80 (275)
                      ..|+|+|+|+|.+|..++..|.+.|++|+++|++++ ..... +.|+.. ..   +.+.   ....++|+||+|+|.+..
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   82 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV   82 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH
Confidence            357999999999999999999999999999999985 33332 346532 12   2221   113689999999998765


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ...+..+ +.  ++++.+++...+
T Consensus        83 ~~~~~~~~~~--~~~~~ii~~~~~  104 (140)
T 1lss_A           83 NLMSSLLAKS--YGINKTIARISE  104 (140)
T ss_dssp             HHHHHHHHHH--TTCCCEEEECSS
T ss_pred             HHHHHHHHHH--cCCCEEEEEecC
Confidence            4444333 33  455667765544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.79  E-value=3.3e-08  Score=87.00  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-hH-HH-------H----cCceEecChHHHhccCCCEEE
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-QL-CH-------R----SGISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~~-a~-------~----~g~~~~~~~~~~~~~~aD~ii   72 (275)
                      +.+.++||+|||+|.||+++|..|+..|+ +|.+||++++. +. +.       .    ..+..+++. ++ +++||+||
T Consensus        10 ~~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~a-l~~aD~VI   87 (328)
T 2hjr_A           10 TVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EY-LQNSDVVI   87 (328)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GG-GTTCSEEE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HH-HCCCCEEE
Confidence            33455799999999999999999999998 99999999742 21 10       0    123555777 43 48999999


Q ss_pred             Eec--Cc--------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           73 IST--SI--------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        73 lav--p~--------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +++  |.              ....++.+++ .+  . ++.+++.+++
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~--~-p~a~viv~tN  132 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY--C-PNAFVICITN  132 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH--C-TTCEEEECCS
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH--C-CCeEEEEecC
Confidence            998  43              2256677777 44  3 6666655544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.79  E-value=2.8e-08  Score=87.62  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-hH-HH-------Hc----CceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-QL-CH-------RS----GISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~~-a~-------~~----g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..|||+|||+|.||+++|..|+..|+ +|.+||++++. +. +.       ..    .+..+++++++ ++++|+||+++
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea-~~~aDiVi~a~   86 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA-LTGADCVIVTA   86 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH-HTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH-hCCCCEEEEcc
Confidence            45799999999999999999999998 99999999742 21 11       11    23456788765 48999999998


Q ss_pred             --Cch-------------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 --SIL-------------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 --p~~-------------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                        |..                   .+.++.+.+ .+   .++.+++.+++
T Consensus        87 g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~vi~~tN  133 (331)
T 1pzg_A           87 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY---CPKTFIIVVTN  133 (331)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH---CTTCEEEECCS
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCcEEEEEcC
Confidence              531                   256677777 54   36677765543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.77  E-value=3.1e-08  Score=86.84  Aligned_cols=87  Identities=16%  Similarity=0.290  Sum_probs=61.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hh-HHH--Hc------CceE-ecChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQ-LCH--RS------GISF-FSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~-~a~--~~------g~~~-~~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+|||+|.||++++..|...|+  +|+++|++++ .+ .+.  ..      ...+ .++.++  ++++|+||+|+|..
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~~aDvViiav~~~   78 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD--LKGSDVVIVAAGVP   78 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG--GTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHH--hCCCCEEEEccCCC
Confidence            689999999999999999999999  9999999974 22 111  11      1222 235433  48999999999963


Q ss_pred             h----------------HHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           79 S----------------LSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        79 ~----------------~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                +.++++.+ ++  . ++++++.+++
T Consensus        79 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~--~-~~~~ii~~tN  117 (319)
T 1a5z_A           79 QKPGETRLQLLGRNARVMKEIARNVSKY--A-PDSIVIVVTN  117 (319)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHHH--C-TTCEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhh--C-CCeEEEEeCC
Confidence            2                46777777 54  3 5566555543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.76  E-value=1.9e-08  Score=84.42  Aligned_cols=80  Identities=18%  Similarity=0.329  Sum_probs=63.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeE-EEEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHHhhcCCC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHIL-RATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEVLNSLPV   89 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V-~~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v~~~l~~   89 (275)
                      |||||||+|.||..+++.|.+.|++| .+||+++..+.       .+++++++ + .++|+|++|+|++...+++...  
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~-------~~~~~~~l-~~~~~DvVv~~~~~~~~~~~~~~~--   70 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK-------MVRGIDEF-LQREMDVAVEAASQQAVKDYAEKI--   70 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTT-------EESSHHHH-TTSCCSEEEECSCHHHHHHHHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhh-------hcCCHHHH-hcCCCCEEEECCCHHHHHHHHHHH--
Confidence            68999999999999999999889987 68998853211       56788885 5 5899999999999877777655  


Q ss_pred             CCCCCCcEEEeCCC
Q 023897           90 HCLQRRTLIADVLS  103 (275)
Q Consensus        90 ~~l~~~~iv~d~~s  103 (275)
                        +..|..+++.++
T Consensus        71 --l~~G~~vv~~~~   82 (236)
T 2dc1_A           71 --LKAGIDLIVLST   82 (236)
T ss_dssp             --HHTTCEEEESCG
T ss_pred             --HHCCCcEEEECc
Confidence              456777777553

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.76  E-value=2.3e-08  Score=88.85  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCceEecChHHHhc-cCCCEEEEecCchh
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLE-ADNDVILISTSILS   79 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~   79 (275)
                      ++.++++||+|||+|.||..++..|.+.  +++++ ++|++++.  ..+.+.|+..+++.++++. .+.|+|++|+|+..
T Consensus         8 m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   87 (354)
T 3q2i_A            8 PITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL   87 (354)
T ss_dssp             CCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred             cCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence            3445678999999999999999999987  67765 78999853  3556678888899998642 27899999999998


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      ..+++...
T Consensus        88 h~~~~~~a   95 (354)
T 3q2i_A           88 HPTQSIEC   95 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766655

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=98.75  E-value=6.7e-07  Score=75.22  Aligned_cols=129  Identities=15%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             cCceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCC
Q 023897           52 SGISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPM  128 (275)
Q Consensus        52 ~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~  128 (275)
                      .|++++++-.|+ ++++|++|+-+|... ..++++.+ ++  +++|.+|..++++....+..+-+.++ .++.+.+.||-
T Consensus       127 aGVkVtsDD~EA-vk~AEi~IlftPfG~~t~~Iakkii~~--lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa  203 (358)
T 2b0j_A          127 VGLKVTSDDREA-VEGADIVITWLPKGNKQPDIIKKFADA--IPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG  203 (358)
T ss_dssp             GTCEEESCHHHH-HTTCSEEEECCTTCTTHHHHHHHHGGG--SCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS
T ss_pred             cCcEeecchHHH-hcCCCEEEEecCCCCCcHHHHHHHHhh--CcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC
Confidence            466788888786 599999999999875 77899998 88  99999999999888766554433343 45788999998


Q ss_pred             CCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHH
Q 023897          129 FGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH  190 (275)
Q Consensus       129 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~  190 (275)
                      +-|+.     +|+.+.-.  .-.+++.++++.+|.++.|..+|.++++-..-+.-..+.++.
T Consensus       204 aVPgt-----~Gq~~~g~--~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~vTA  258 (358)
T 2b0j_A          204 CVPEM-----KGQVYIAE--GYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAVTA  258 (358)
T ss_dssp             SCTTT-----CCCEEEEE--SSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHHHH
T ss_pred             CCCCC-----CCcccccc--ccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHHHH
Confidence            87775     34433322  234789999999999999999999986433333223344444

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.70  E-value=5.5e-08  Score=76.03  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CCCCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-HcCceEe-cC---hH---HHhccCCCEEEEe
Q 023897            4 SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-RSGISFF-SD---KR---AFLEADNDVILIS   74 (275)
Q Consensus         4 ~~~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-~~g~~~~-~~---~~---~~~~~~aD~iila   74 (275)
                      ++|.....++|.|+|+|.+|..++..|.+.|++|++++++++ .+.+. +.|.... .+   .+   ++-..++|+||+|
T Consensus        12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            345566778999999999999999999999999999999985 33333 4565322 22   22   1113579999999


Q ss_pred             cCchhHHHHhhcC
Q 023897           75 TSILSLSEVLNSL   87 (275)
Q Consensus        75 vp~~~~~~v~~~l   87 (275)
                      +|.+.....+..+
T Consensus        92 ~~~~~~~~~~~~~  104 (155)
T 2g1u_A           92 TNDDSTNFFISMN  104 (155)
T ss_dssp             SSCHHHHHHHHHH
T ss_pred             eCCcHHHHHHHHH
Confidence            9987654443333

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.67  E-value=8e-08  Score=73.83  Aligned_cols=74  Identities=8%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cChH---HHhccCCCEEEEecCch
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDKR---AFLEADNDVILISTSIL   78 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~---~~~~~~aD~iilavp~~   78 (275)
                      ....+.+|.|+|+|.+|..+++.|.+.|++|+++|++++ .+.+.+.|+...    ++.+   ++-+.++|++|+++|.+
T Consensus         3 ~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~   82 (140)
T 3fwz_A            3 AVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG   82 (140)
T ss_dssp             CCCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred             cccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence            344456899999999999999999999999999999995 455556677432    1221   21136899999999987


Q ss_pred             hH
Q 023897           79 SL   80 (275)
Q Consensus        79 ~~   80 (275)
                      ..
T Consensus        83 ~~   84 (140)
T 3fwz_A           83 YE   84 (140)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.67  E-value=4.4e-08  Score=86.92  Aligned_cols=82  Identities=17%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CCCCCCCeEEEEcCChHHH-HHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhc-cCCCEEEEecCchh
Q 023897            6 PSSSSTLKIGIIGFGPFGQ-FLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLE-ADNDVILISTSILS   79 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~-sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~   79 (275)
                      |..|+++||||||+|.||. .++..|.+. +++|+ ++|++++.  ..+.+.|+..+++.++++. .+.|+|++|+|+..
T Consensus        22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           22 PANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL  101 (350)
T ss_dssp             ----CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred             CCCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence            4556678999999999998 799999887 67766 68999853  4556678887889998642 25899999999998


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      ..+++...
T Consensus       102 h~~~~~~a  109 (350)
T 3rc1_A          102 HAEWIDRA  109 (350)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.66  E-value=1.3e-07  Score=82.35  Aligned_cols=108  Identities=17%  Similarity=0.299  Sum_probs=68.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh-h-HHHHc--------CceEe-cChHHHhccCCCEEEEecCch
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS-Q-LCHRS--------GISFF-SDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~-~-~a~~~--------g~~~~-~~~~~~~~~~aD~iilavp~~   78 (275)
                      |||+|||+|.||+++|..|+.+|+  +|+++|++++. + .+.+.        ...+. ++.++  ++++|+||++++..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a--~~~aDvVIi~~~~~   78 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSE--LADAQVVILTAGAN   78 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGG--GTTCSEEEECC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHH--hCCCCEEEEcCCCC
Confidence            699999999999999999999998  99999999852 2 12211        12222 34443  48999999999543


Q ss_pred             h----------------HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeec
Q 023897           79 S----------------LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCT  125 (275)
Q Consensus        79 ~----------------~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~  125 (275)
                      .                +.++++.+ ++   .++++++.+++.-......+.+..+ ..++++.
T Consensus        79 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~---~p~~~vi~~tNP~~~~~~~~~~~~~-~~rviG~  138 (304)
T 2v6b_A           79 QKPGESRLDLLEKNADIFRELVPQITRA---APDAVLLVTSNPVDLLTDLATQLAP-GQPVIGS  138 (304)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHH---CSSSEEEECSSSHHHHHHHHHHHSC-SSCEEEC
T ss_pred             CCCCCcHHHHHHhHHHHHHHHHHHHHHh---CCCeEEEEecCchHHHHHHHHHhCC-hhcEEeC
Confidence            2                35666666 43   3666666554433333344555543 3355544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.66  E-value=1e-07  Score=87.40  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....++|+|||+|.||+++|+.++..|.+|++||+++.. ..+...|+.. .+++++ ++++|+|++++....+  .+.+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~el-l~~aDiVi~~~~t~~lI~~~~l  331 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEI-VDKGDFFITCTGNVDVIKLEHL  331 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHH-TTTCSEEEECCSSSSSBCHHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHH-HhcCCEEEECCChhhhcCHHHH
Confidence            456789999999999999999999999999999999864 3555667765 478886 5899999999744322  1222


Q ss_pred             hcCCCCCCCCCcEEEeCCCCCh-hHHHHHHh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKE-YPRNVLLQ  114 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~-~~~~~l~~  114 (275)
                         ..  +++|.+++|++.... ...+.+.+
T Consensus       332 ---~~--MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          332 ---LK--MKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             ---TT--CCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             ---hh--cCCCcEEEEeCCCCccccchhhhc
Confidence               33  788999999997655 23455655

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.64  E-value=5.9e-08  Score=84.47  Aligned_cols=78  Identities=21%  Similarity=0.335  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      |+++||||||+|.||.. ++..|.+. ++++. ++|++++.  ..+.+.|+..+++.++++ ++.|+|++|+|+....++
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll-~~~D~V~i~tp~~~h~~~   82 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLA-KKCDCIFLHSSTETHYEI   82 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHH-TTCSEEEECCCGGGHHHH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHH-hcCCEEEEeCCcHhHHHH
Confidence            45689999999999996 88888874 67777 79999853  355667887688999964 699999999999988777


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        83 ~~~a   86 (308)
T 3uuw_A           83 IKIL   86 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.63  E-value=1.6e-07  Score=86.41  Aligned_cols=92  Identities=10%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....++|+|||+|.||+.+|+.++..|.+|++|||++.. ..+...|... .+++++ ++++|+|++++....+  .+.+
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~el-l~~aDiVi~~~~t~~lI~~~~l  351 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYA-ADKADIFVTATGNYHVINHDHM  351 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHH-TTTCSEEEECSSSSCSBCHHHH
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHH-HhcCCEEEECCCcccccCHHHH
Confidence            456789999999999999999999999999999999854 2455567765 478886 5899999999854321  2333


Q ss_pred             hcCCCCCCCCCcEEEeCCCCCh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      .   .  ++++.+++|++....
T Consensus       352 ~---~--MK~gAilINvgrg~v  368 (494)
T 3d64_A          352 K---A--MRHNAIVCNIGHFDS  368 (494)
T ss_dssp             H---H--CCTTEEEEECSSSSC
T ss_pred             h---h--CCCCcEEEEcCCCcc
Confidence            3   3  688999999987543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.62  E-value=8e-08  Score=84.95  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEV   83 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v   83 (275)
                      .++||+|||+|.||..++..|.+. +++|+ ++|++++.  ..+.+.|+..+++.+++ ++  +.|+|++|+|+....++
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~-l~~~~~D~V~i~tp~~~h~~~   81 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEV-FARDDIDGIVIGSPTSTHVDL   81 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHH-TTCSCCCEEEECSCGGGHHHH
T ss_pred             CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHH-hcCCCCCEEEEeCCchhhHHH
Confidence            357999999999999999999986 67766 68999853  34566788888999996 46  78999999999987777


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        82 ~~~a   85 (344)
T 3euw_A           82 ITRA   85 (344)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.62  E-value=1.3e-07  Score=85.41  Aligned_cols=91  Identities=10%  Similarity=0.128  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-   85 (275)
                      ....++|+|||+|.||.++|+.|+..|.+|+++|+++.. ..+...|... .+++++ ++++|+|+++.....+   +. 
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~ea-l~~ADVVilt~gt~~i---I~~  282 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDV-VEEAHIFVTTTGNDDI---ITS  282 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHH-TTTCSEEEECSSCSCS---BCT
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHH-HhhCCEEEECCCCcCc---cCH
Confidence            345789999999999999999999999999999999853 4566677765 478886 5899999987765432   22 


Q ss_pred             cC-CCCCCCCCcEEEeCCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      +. ..  ++++.++++++...
T Consensus       283 e~l~~--MK~gAIVINvgRg~  301 (436)
T 3h9u_A          283 EHFPR--MRDDAIVCNIGHFD  301 (436)
T ss_dssp             TTGGG--CCTTEEEEECSSSG
T ss_pred             HHHhh--cCCCcEEEEeCCCC
Confidence            22 44  78999999998544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.61  E-value=1.2e-07  Score=83.01  Aligned_cols=78  Identities=23%  Similarity=0.375  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      |+++||+|||+|.||.. ++..|.+. +++++ ++|++++.  ..+.+.|+..+++.+++ ..+.|+|++|+|+....++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l-~~~~D~V~i~tp~~~h~~~   81 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL-AASCDAVFVHSSTASHFDV   81 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH-HTTCSEEEECSCTTHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHh-hcCCCEEEEeCCchhHHHH
Confidence            45689999999999996 88888764 67766 78998853  34555677777788775 5789999999999877776


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        82 ~~~a   85 (319)
T 1tlt_A           82 VSTL   85 (319)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.60  E-value=1e-07  Score=76.41  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHC-CCeEEEEcCChh-hhHHHHcCceEe----cCh---HHH-hccCCCEEEEecCc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQ-GHILRATSRTDH-SQLCHRSGISFF----SDK---RAF-LEADNDVILISTSI   77 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~dr~~~-~~~a~~~g~~~~----~~~---~~~-~~~~aD~iilavp~   77 (275)
                      ....++|.|+|+|.||..+++.|.+. |++|+++|++++ ...+.+.|+...    ++.   .++ -+.++|+||+++|.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            34567999999999999999999999 999999999985 445556676432    222   221 03678999999997


Q ss_pred             hhH
Q 023897           78 LSL   80 (275)
Q Consensus        78 ~~~   80 (275)
                      ...
T Consensus       116 ~~~  118 (183)
T 3c85_A          116 HQG  118 (183)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.60  E-value=3.5e-08  Score=86.40  Aligned_cols=69  Identities=13%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhhHH--HH----c-----CceEecChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQLC--HR----S-----GISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a--~~----~-----g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..++||+|||+|.||++++..|+..|.  +|.++|++++...+  .+    .     .+.+..+..++ +++||+||+|+
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~a-l~~aDvViia~   82 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CRDADLVVICA   82 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TTTCSEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHH-hCCCCEEEEcC
Confidence            455799999999999999999998875  89999999753211  11    1     23333334444 48999999997


Q ss_pred             Cch
Q 023897           76 SIL   78 (275)
Q Consensus        76 p~~   78 (275)
                      |..
T Consensus        83 ~~~   85 (316)
T 1ldn_A           83 GAN   85 (316)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.59  E-value=9.2e-08  Score=83.61  Aligned_cols=89  Identities=19%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hh-HHH--HcC------ce--EecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQ-LCH--RSG------IS--FFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~-~a~--~~g------~~--~~~~~~~~~~~~aD~iilav   75 (275)
                      .+|||+|||+|.||+++|..|...|+  +|+++|++++ .+ .+.  ..+      ..  .+++.++  +.++|+||+|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~aD~Vii~v   83 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI--CRDADMVVITA   83 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG--GTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHH--hCCCCEEEECC
Confidence            45899999999999999999999998  9999999974 22 121  122      22  2235443  37999999999


Q ss_pred             Cchh----------------HHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SILS----------------LSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~~~----------------~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +...                +.+++..+ ++   .++++++.+++
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~---~~~~~vi~~~N  125 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIMPNLVKV---APNAIYMLITN  125 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH---CTTSEEEECCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCceEEEecC
Confidence            5432                23666666 42   45667766543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.58  E-value=4.1e-08  Score=83.21  Aligned_cols=113  Identities=13%  Similarity=0.106  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .. +|+|||+|.||++++..|.+.|. +|++++|+++..  .+.+.+.....++.+. +.++|+||.|||.....+ ...
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~-~~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEV-VKKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHH-HHTCSEEEECSSTTTTSC-CCS
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhh-hcCCCEEEECCCCCCCCC-CCC
Confidence            45 89999999999999999999998 899999998532  2222232234556664 479999999998643211 011


Q ss_pred             CCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCc-eeecCCC
Q 023897           87 LPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMD-VLCTHPM  128 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~-~v~~hP~  128 (275)
                      ++...++++.+++|+.....+..+..++.   +.+ ++++.||
T Consensus       185 i~~~~l~~~~~V~Divy~~T~ll~~A~~~---G~~~~~~Gl~M  224 (253)
T 3u62_A          185 VSDDSLKNLSLVYDVIYFDTPLVVKARKL---GVKHIIKGNLM  224 (253)
T ss_dssp             CCHHHHTTCSEEEECSSSCCHHHHHHHHH---TCSEEECTHHH
T ss_pred             CCHHHhCcCCEEEEeeCCCcHHHHHHHHC---CCcEEECCHHH
Confidence            21111577889999876544444444432   445 5555444

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.57  E-value=4.2e-07  Score=79.73  Aligned_cols=89  Identities=15%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-h-HH--HH-----c--C--ceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-Q-LC--HR-----S--G--ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~-~a--~~-----~--g--~~~~~~~~~~~~~~aD~iilav   75 (275)
                      .++||+|||+|.||.++|..|+..|+ +|.++|++++. + .+  .+     .  .  +..+++. ++ +++||+||+++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~a-l~~aD~Vi~a~   80 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DD-LAGADVVIVTA   80 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GG-GTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH-hCCCCEEEEeC
Confidence            35799999999999999999999998 99999998742 1 11  11     1  2  3445677 44 48999999998


Q ss_pred             --Cc-------------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 --SI-------------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 --p~-------------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                        |.                   ..+.++.+.+ .+  . ++.+++.+++
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~--~-p~a~iiv~tN  127 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN--C-PNAFIIVVTN  127 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH--C-TTSEEEECSS
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH--C-CCeEEEEecC
Confidence              42                   1356666776 44  3 6666655543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.57  E-value=5.1e-08  Score=85.20  Aligned_cols=83  Identities=22%  Similarity=0.341  Sum_probs=59.2

Q ss_pred             CCCCCCCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh-hHHHHcCceEecChHHHhc-cCCCEEEEecCchh
Q 023897            4 SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS-QLCHRSGISFFSDKRAFLE-ADNDVILISTSILS   79 (275)
Q Consensus         4 ~~~~~~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~-~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~   79 (275)
                      +.|..+.++||+|||+|.||..++..|.+. ++++. ++|++++. +...+. +..+++.++++. .+.|+|++|+|+..
T Consensus         3 ~~p~~~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~   81 (315)
T 3c1a_A            3 SIPANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPAT   81 (315)
T ss_dssp             ------CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGG
T ss_pred             CCCCCCCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHH
Confidence            445556678999999999999999999986 56654 79999853 222122 566788888641 27899999999998


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      ..+++...
T Consensus        82 h~~~~~~a   89 (315)
T 3c1a_A           82 HAEITLAA   89 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.57  E-value=1.1e-07  Score=72.95  Aligned_cols=71  Identities=17%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cChHH---HhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDKRA---FLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~~---~~~~~aD~iilavp~~~~   80 (275)
                      .+++|.|+|+|.+|..+++.|.+.|++|+++|++++ .+...+.|....    ++.+.   +-..++|+||+++|.+..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence            456899999999999999999999999999999985 445555565321    22221   112579999999997644

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.57  E-value=1.1e-07  Score=84.56  Aligned_cols=78  Identities=19%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChh-hhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDH-SQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~-~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v   83 (275)
                      |+++||+|||+|.||...+..|.+. +++|. ++|++++ .+.+.+.|+..+++.++++ .  +.|+|++|+|+....++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~   81 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVL-ADEKVDAVLIATPNDSHKEL   81 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHH-HCTTCCEEEECSCGGGHHHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHh-cCCCCCEEEEcCCcHHHHHH
Confidence            4567999999999999999999887 67776 6799985 3456677888889999864 4  78999999999887777


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        82 ~~~a   85 (359)
T 3e18_A           82 AISA   85 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.56  E-value=7.4e-08  Score=84.74  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhcc--CCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLEA--DNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~--~aD~iilavp~~~~~   81 (275)
                      ++++||||||+|.||..++..|.+. +++|+ ++|++++.  ..+.+.|+ ..+++.++++ .  +.|+|++|+|+....
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   81 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELC-KDETIDIIYIPTYNQGHY   81 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHH-HCTTCSEEEECCCGGGHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHh-cCCCCCEEEEcCCCHHHH
Confidence            4567999999999999999999985 66766 68998853  45566787 5778998864 5  789999999999877


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +++...
T Consensus        82 ~~~~~a   87 (330)
T 3e9m_A           82 SAAKLA   87 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.56  E-value=4.4e-07  Score=79.54  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HH----HH-----cCc--eEecChHHHhccCCCEE
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LC----HR-----SGI--SFFSDKRAFLEADNDVI   71 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a----~~-----~g~--~~~~~~~~~~~~~aD~i   71 (275)
                      |..|.++||+|||+|.||.++|..|+..|+ +|.++|++++..  .+    ..     ...  ..+++. ++ +++||+|
T Consensus         2 ~~~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a-~~~aDiV   79 (324)
T 3gvi_A            2 PGSMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AA-IEGADVV   79 (324)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GG-GTTCSEE
T ss_pred             CCCCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HH-HCCCCEE
Confidence            455678899999999999999999999998 999999987421  11    10     122  344666 43 4899999


Q ss_pred             EEecCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCCC
Q 023897           72 LISTSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        72 ilavp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~  104 (275)
                      |++.+.                ..+.++.+.+ .+   .++.+++.+++-
T Consensus        80 Iiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~---~p~a~iivvtNP  126 (324)
T 3gvi_A           80 IVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY---APEAFVICITNP  126 (324)
T ss_dssp             EECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH---CTTCEEEECCSS
T ss_pred             EEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH---CCCeEEEecCCC
Confidence            999753                1234555555 33   466777766653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.56  E-value=1.6e-07  Score=82.58  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=62.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~   84 (275)
                      ++||+|||+|.||..++..|.+. +++|+ ++|++++.  ..+.+.|+. +++.++++ +  +.|+|++|+|+....+++
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~D~V~i~tp~~~h~~~~   80 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIE-AAADIDAVVICTPTDTHADLI   80 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHH-HCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHh-cCCCCCEEEEeCCchhHHHHH
Confidence            47999999999999999999986 67776 68999853  456667888 88999864 5  789999999999877776


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ...
T Consensus        81 ~~a   83 (331)
T 4hkt_A           81 ERF   83 (331)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.55  E-value=1.6e-07  Score=72.30  Aligned_cols=105  Identities=10%  Similarity=0.059  Sum_probs=73.0

Q ss_pred             CCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ..+|+|||+    |.+|..+++.|.+.||+  +|++|+......-.|...+.++.++ .+..|++++++|+....+++++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i~G~~~~~sl~el-~~~vDlavi~vp~~~~~~v~~~   89 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEELFGEEAVASLLDL-KEPVDILDVFRPPSALMDHLPE   89 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEETTEECBSSGGGC-CSCCSEEEECSCHHHHTTTHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcCCCEEecCCHHHC-CCCCCEEEEEeCHHHHHHHHHH
Confidence            468999999    89999999999999997  5666664211111477888889884 5679999999999988888877


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      + ..   ..+.+++..+.......+..++   .+.++++
T Consensus        90 ~~~~---gi~~i~~~~g~~~~~~~~~a~~---~Gir~vg  122 (140)
T 1iuk_A           90 VLAL---RPGLVWLQSGIRHPEFEKALKE---AGIPVVA  122 (140)
T ss_dssp             HHHH---CCSCEEECTTCCCHHHHHHHHH---TTCCEEE
T ss_pred             HHHc---CCCEEEEcCCcCHHHHHHHHHH---cCCEEEc
Confidence            7 32   2335666655443333333332   3466665

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.55  E-value=4.3e-07  Score=79.22  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=49.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh-h-HH--HHc-------C--ceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS-Q-LC--HRS-------G--ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~-~-~a--~~~-------g--~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.||+++|..|+..  |++|+++|++++. + .+  ...       .  +..+++.++ + +++|+||+|+|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l-~~aDvViiav~   78 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T-ANSDIVIITAG   78 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G-TTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-H-CCCCEEEEeCC
Confidence            6999999999999999999985  7899999999742 2 11  111       1  244567766 3 89999999997


Q ss_pred             c
Q 023897           77 I   77 (275)
Q Consensus        77 ~   77 (275)
                      .
T Consensus        79 ~   79 (310)
T 1guz_A           79 L   79 (310)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.54  E-value=1.2e-07  Score=84.27  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v   83 (275)
                      ++++||+|||+|.||..++..|.+. +++|+ ++|++++.  ..+.+.|+..+++.++++. .+.|+|++|+|+....++
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   82 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV   82 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            3457999999999999999999887 67765 78999853  3456678877889998631 468999999999887776


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        83 ~~~a   86 (354)
T 3db2_A           83 IEQC   86 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.54  E-value=1.8e-07  Score=83.22  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=61.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHH-H-CCCeEE-EEcCChhh--hHHHHcC--ceEecChHHHhcc-CCCEEEEecCch
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMI-K-QGHILR-ATSRTDHS--QLCHRSG--ISFFSDKRAFLEA-DNDVILISTSIL   78 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~-~-~g~~V~-~~dr~~~~--~~a~~~g--~~~~~~~~~~~~~-~aD~iilavp~~   78 (275)
                      ..|+++||||||+|.||..++..|. + .+++|+ ++|++++.  ..+.+.|  ...+++.++++.. +.|+|++|+|+.
T Consensus        19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~   98 (357)
T 3ec7_A           19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNE   98 (357)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             cCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            3456679999999999999999998 4 367766 68999853  3456667  6788999986422 589999999999


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      ...+++...
T Consensus        99 ~h~~~~~~a  107 (357)
T 3ec7_A           99 AHADVAVAA  107 (357)
T ss_dssp             GHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877777665

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.53  E-value=8.4e-07  Score=74.53  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      .||||+|+|+|+||+.+++.+.+.+.++.+ +|+++..    ..|+.++++++++ . ++|++|-++.++...+.+. +.
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l-~-~~DVvIDft~p~a~~~~~~-l~   74 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADV-K-GADVAIDFSNPNLLFPLLD-ED   74 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTC-T-TCSEEEECSCHHHHHHHHT-SC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHH-h-CCCEEEEeCChHHHHHHHH-Hh
Confidence            468999999999999999999988767664 7887642    3677788888884 4 8999997777776666666 52


Q ss_pred             CCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           89 VHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      .    .-.+++-+++......+.+.+..
T Consensus        75 ~----g~~vVigTTG~s~e~~~~l~~aa   98 (243)
T 3qy9_A           75 F----HLPLVVATTGEKEKLLNKLDELS   98 (243)
T ss_dssp             C----CCCEEECCCSSHHHHHHHHHHHT
T ss_pred             c----CCceEeCCCCCCHHHHHHHHHHH
Confidence            1    11244433333233344555554

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.52  E-value=3.5e-07  Score=84.05  Aligned_cols=111  Identities=12%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCChhh-hH----HH----Hc----CceEecChHHHhccCCCE
Q 023897           10 STLKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTDHS-QL----CH----RS----GISFFSDKRAFLEADNDV   70 (275)
Q Consensus        10 ~~~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~~~-~~----a~----~~----g~~~~~~~~~~~~~~aD~   70 (275)
                      .++||+|||+|.+ |.+++..|..+     +.+|.+||++++. +.    ..    ..    .+..+++.+++ +++||+
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~ea-l~~AD~  105 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEA-FTDVDF  105 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHH-HSSCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHH-HcCCCE
Confidence            3469999999998 66678778777     5689999999852 11    11    11    23456787665 489999


Q ss_pred             EEEecCch------------------------------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHH
Q 023897           71 ILISTSIL------------------------------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLL  113 (275)
Q Consensus        71 iilavp~~------------------------------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~  113 (275)
                      ||+++|..                                    .+.++++.+ .   ..|+.+++.+++--..+.+.+.
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~---~~P~A~ii~~TNPvdi~T~~~~  182 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK---YSPDAWMLNYSNPAAIVAEATR  182 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTCEEEECCSCHHHHHHHHH
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHH
Confidence            99999983                                    244555666 3   3577888877654444446666


Q ss_pred             hhCCCCCceeec
Q 023897          114 QVLPEEMDVLCT  125 (275)
Q Consensus       114 ~~l~~~~~~v~~  125 (275)
                      +..+ ..++++.
T Consensus       183 k~~p-~~rViG~  193 (472)
T 1u8x_X          183 RLRP-NSKILNI  193 (472)
T ss_dssp             HHST-TCCEEEC
T ss_pred             HhCC-CCCEEEe
Confidence            6654 3466664

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.50  E-value=1.1e-06  Score=76.03  Aligned_cols=87  Identities=14%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cC--ceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SG--ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g--~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.||+++|..|+..|+  +|.+||++++..  .+.+         ..  +..+++ .++ +++||+||++.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a-~~~aDiVViaag   78 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSL-LKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGG-GTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHH-hCCCCEEEECCC
Confidence            799999999999999999999998  999999998531  1110         12  234456 554 489999999975


Q ss_pred             ch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 IL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ..                .+.++.+.+ .   ..++.+++.+++
T Consensus        79 ~~~kpG~~R~dl~~~N~~i~~~i~~~i~~---~~p~a~iivvsN  119 (294)
T 1oju_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVE---NAPESKILVVTN  119 (294)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHT---TSTTCEEEECSS
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHh---hCCCeEEEEeCC
Confidence            42                234555555 3   356677776664

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.49  E-value=4e-07  Score=79.20  Aligned_cols=232  Identities=13%  Similarity=0.123  Sum_probs=120.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhhhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      |+++||+|||+|+||..++..|.+. +++|. ++|++++....  .|+.  ...++.+ . .+.|+|++|+|+....+.+
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--~g~~~~~~~~l~~-~-~~~DvViiatp~~~h~~~~   82 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--ELQPFRVVSDIEQ-L-ESVDVALVCSPSREVERTA   82 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGG-S-SSCCEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--cCCCcCCHHHHHh-C-CCCCEEEECCCchhhHHHH
Confidence            4567999999999999999999884 67877 68998753221  5553  3455555 2 6899999999999887777


Q ss_pred             hcCCCCCCCCCcEEEeCCCC-Ch--hHHHHHHhhCC-CCCceeecCCCCCCCCC------cCCccccceeeeee-ecCCh
Q 023897           85 NSLPVHCLQRRTLIADVLSV-KE--YPRNVLLQVLP-EEMDVLCTHPMFGPESG------QNGWKDFAFVYEKV-RIRDE  153 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~-k~--~~~~~l~~~l~-~~~~~v~~hP~~g~~~~------~~~~~g~~~~~~~~-~~~~~  153 (275)
                      ...    +..|..+++.... ..  ...+.+.+... .+..++-+| -+.|...      .++.-|....+... .+.+.
T Consensus        83 ~~a----l~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~-~~~p~~~~~~~~i~~g~lG~~~~~~~~~~~~~~  157 (304)
T 3bio_A           83 LEI----LKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIAS-GWDPGSDSVVRTLMQAIVPKGITYTNFGPGMSM  157 (304)
T ss_dssp             HHH----HTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSC-BBTTBHHHHHHHHHHHHSCEEEEEEEECSEECH
T ss_pred             HHH----HHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeC-CCCHHHHHHHHHHHCCCCCCcEEEEEeCCCcch
Confidence            765    4456666654322 11  11122222211 122322223 2222210      00011222112111 11111


Q ss_pred             HHHHHHHHHHHHc--------------CCeEEEcChhHH---HHHHHHhhhhHHHHHHHHhhc-ccc----cCcccCcch
Q 023897          154 ATCSSFLRIFESE--------------GCKMLEMSCEEH---DKVAAKSQFLTHTIGRVLSEL-EIQ----STSMNTKGF  211 (275)
Q Consensus       154 ~~~~~~~~l~~~~--------------G~~v~~~~~~~h---D~~~a~~~~lp~~~a~~l~~~-~~~----~~~l~~~~~  211 (275)
                      .....++.+ ...              ..+..++..++|   +.+.+.++++| .++..+.+. ..+    ...|..++|
T Consensus       158 ~~~~~~r~~-~g~~~~~~~~~p~~~~~h~~~~~~~~~~~~~~~~v~~~i~~~p-~~~~~~~~~~~~ed~~~~~~~~~G~~  235 (304)
T 3bio_A          158 GHTVAVKAI-DGVKAALSMTIPLGTGVHRRMVYVELLPGHNLEEVSAAIKADE-YFVHDETHVIQVDEVDALIDMGHGVR  235 (304)
T ss_dssp             HHHHHHHTS-TTEEEEEEEEEECSTTCEEEEEEEEECTTCCHHHHHHHHHHST-TTTTSEEEEEECSCGGGGCCCEEEEE
T ss_pred             hhHHHHHhC-cCchheEEecCCCCCCcceeeEEEEEcCCCCHHHHHHHHhcCC-ccCCceeEEEEEeeeeeeeccCCceE
Confidence            111112211 011              112334444444   88889999999 554333221 111    235666777


Q ss_pred             HHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHHHHHHHHHH
Q 023897          212 ETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLDLEAAFEKV  253 (275)
Q Consensus       212 ~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~~~~~l~~~  253 (275)
                        .++.+....+.+..+|.+|...|+... +.|..|.+++-++
T Consensus       236 --~~~~~s~~~~~~~~~e~~i~~~N~~~~~~~l~~~~~~~~~~  276 (304)
T 3bio_A          236 --MVRKGVSGSTQNQRMSFDMEINNPALTGQVLVCAARAAMRQ  276 (304)
T ss_dssp             --EEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHTTS
T ss_pred             --EEEEecccCcCCceEEEEEecCCHHHHHHHHHHHHHHHhhc
Confidence              555544432222378888888899886 8888888866544

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.49  E-value=5.3e-07  Score=69.71  Aligned_cols=103  Identities=8%  Similarity=0.036  Sum_probs=71.8

Q ss_pred             CCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      ..+|+|||+    |.+|..+++.|.+.||+|  |++++...  .-.|...+.+++++ ....|++++++|+....+++++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v--~~Vnp~~~--~i~G~~~y~sl~~l-~~~vDlvvi~vp~~~~~~vv~~   96 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDV--YPVNPKYE--EVLGRKCYPSVLDI-PDKIEVVDLFVKPKLTMEYVEQ   96 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEE--EEECTTCS--EETTEECBSSGGGC-SSCCSEEEECSCHHHHHHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEE--EEECCCCC--eECCeeccCCHHHc-CCCCCEEEEEeCHHHHHHHHHH
Confidence            568999999    799999999999999984  55555321  11477888888884 4679999999999999999988


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      + ..   ..+.+++..+.......+..++   .+.++++
T Consensus        97 ~~~~---gi~~i~~~~g~~~~~l~~~a~~---~Gi~vvG  129 (144)
T 2d59_A           97 AIKK---GAKVVWFQYNTYNREASKKADE---AGLIIVA  129 (144)
T ss_dssp             HHHH---TCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHHc---CCCEEEECCCchHHHHHHHHHH---cCCEEEc
Confidence            7 42   2345665544433333333332   3566665

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.48  E-value=1.5e-07  Score=83.94  Aligned_cols=88  Identities=10%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEec-------------------------ChHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS-------------------------DKRAF   63 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~-------------------------~~~~~   63 (275)
                      ...||+|||+|.+|...++.++..|.+|+++|+++. .+.+.+.|..+..                         ++.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~  262 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA  262 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence            456999999999999999999999999999999985 4556666665322                         34454


Q ss_pred             hccCCCEEEEec--Cchh-----HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           64 LEADNDVILIST--SILS-----LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        64 ~~~~aD~iilav--p~~~-----~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       +.++|+||.++  |...     ..+.++.     +++|.+++|++.
T Consensus       263 -l~~aDIVI~tv~iPg~~ap~Lvt~emv~~-----MkpGsVIVDvA~  303 (381)
T 3p2y_A          263 -ITKFDIVITTALVPGRPAPRLVTAAAATG-----MQPGSVVVDLAG  303 (381)
T ss_dssp             -HTTCSEEEECCCCTTSCCCCCBCHHHHHT-----SCTTCEEEETTG
T ss_pred             -HhcCCEEEECCCCCCcccceeecHHHHhc-----CCCCcEEEEEeC
Confidence             48999999986  4321     2333333     678999999974

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.48  E-value=2.5e-07  Score=81.78  Aligned_cols=76  Identities=22%  Similarity=0.447  Sum_probs=61.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhcc--CCCEEEEecCchhHHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLEA--DNDVILISTSILSLSEV   83 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~--~aD~iilavp~~~~~~v   83 (275)
                      ++||+|||+|.||..++..|.+. +++++ ++|++++.  ..+.+.|+ ..+++.++++ +  +.|+|++|+|+....++
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELI-EDPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHH-HCTTCCEEEECSCGGGHHHH
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHh-cCCCCCEEEEcCCCcchHHH
Confidence            46999999999999999999885 56766 68999853  34566676 4788999864 5  78999999999987776


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        81 ~~~a   84 (344)
T 3ezy_A           81 VIAC   84 (344)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.47  E-value=3.8e-07  Score=80.55  Aligned_cols=76  Identities=20%  Similarity=0.355  Sum_probs=61.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHH-H-CCCeEE-EEcCChhh--hHHHHcC--ceEecChHHHhccC--CCEEEEecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMI-K-QGHILR-ATSRTDHS--QLCHRSG--ISFFSDKRAFLEAD--NDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~-~-~g~~V~-~~dr~~~~--~~a~~~g--~~~~~~~~~~~~~~--aD~iilavp~~~~~   81 (275)
                      ++||+|||+|.||..++..|. + .+++|+ ++|++++.  ..+.+.|  ...+++.++++ ++  .|+|++|+|+....
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLL-ADENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHH-HCTTCCEEEECSCGGGHH
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHh-cCCCCCEEEECCCchhHH
Confidence            469999999999999999998 4 367766 68999853  4556677  57889999864 44  89999999999877


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +++...
T Consensus        81 ~~~~~a   86 (344)
T 3mz0_A           81 SSVLKA   86 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777665

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.47  E-value=2.1e-07  Score=82.48  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-C-CCeEEEEcCChhh--hHHHHc----Cc--eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-Q-GHILRATSRTDHS--QLCHRS----GI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~-g~~V~~~dr~~~~--~~a~~~----g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ..++|+|||+|.||.+++.+|.. . ..+|.+|||+++.  +.+.+.    |+  ....+++++ +.++|+|+.|||...
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~ea-v~~aDiVi~aTps~~  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEA-VKGVDIITTVTADKA  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHH-HTTCSEEEECCCCSS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHH-HhcCCEEEEeccCCC
Confidence            45789999999999999998864 3 4689999999853  233332    53  456788886 489999999999863


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      ...++.. ..  +++|+.++++++.+.
T Consensus       207 ~~pvl~~-~~--l~~G~~V~~vgs~~p  230 (350)
T 1x7d_A          207 YATIITP-DM--LEPGMHLNAVGGDCP  230 (350)
T ss_dssp             EEEEECG-GG--CCTTCEEEECSCCBT
T ss_pred             CCceecH-HH--cCCCCEEEECCCCCC
Confidence            2222211 23  788999999987653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.44  E-value=1.2e-06  Score=79.07  Aligned_cols=91  Identities=10%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....++|+|||+|.+|..+|+.++..|.+|+++++++.. ..+...|... .+++++ +..+|+|+.+++...+  .+.+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeEl-L~~ADIVv~atgt~~lI~~e~l  321 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDA-ASTADIVVTTTGNKDVITIDHM  321 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHH-GGGCSEEEECCSSSSSBCHHHH
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHH-HhhCCEEEECCCCccccCHHHH
Confidence            456789999999999999999999999999999999853 4455667765 478886 5899999998765422  2333


Q ss_pred             hcCCCCCCCCCcEEEeCCCCC
Q 023897           85 NSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      ..     ++++.++++++...
T Consensus       322 ~~-----MK~GAILINvGRgd  337 (464)
T 3n58_A          322 RK-----MKDMCIVGNIGHFD  337 (464)
T ss_dssp             HH-----SCTTEEEEECSSST
T ss_pred             hc-----CCCCeEEEEcCCCC
Confidence            33     68899999987544

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.44  E-value=2.9e-07  Score=80.88  Aligned_cols=78  Identities=17%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCce-EecChHHHhcc--CCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGIS-FFSDKRAFLEA--DNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~-~~~~~~~~~~~--~aD~iilavp~~~~~   81 (275)
                      ++++||||||+|.||..++..|.+. +.+|+ ++|++++.  ..+.+.|+. .+++.++++ .  +.|+|++|+|+....
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   81 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDML-ADESIDVIYVATINQDHY   81 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHH-TCTTCCEEEECSCGGGHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHh-cCCCCCEEEECCCcHHHH
Confidence            4568999999999999999999876 45555 68998853  455666774 788999864 5  689999999998877


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +++...
T Consensus        82 ~~~~~a   87 (329)
T 3evn_A           82 KVAKAA   87 (329)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.42  E-value=1.4e-06  Score=76.37  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhhH--H--HH-------cCceEecChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQL--C--HR-------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~~--a--~~-------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...+||+|||+|.||+++|..|+..|+  +|.++|++++...  +  ..       .++.++++..++ +++||+||++.
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a-~~~aDvVvi~a   81 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYED-CKDADIVCICA   81 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGG-GTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHH-hCCCCEEEEec
Confidence            346899999999999999999999987  8999999875311  1  11       133333333343 48999999997


Q ss_pred             Cch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +..                .+.++.+.+ .+   .++.+++.+++
T Consensus        82 g~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~---~p~a~vlvvtN  123 (326)
T 3pqe_A           82 GANQKPGETRLELVEKNLKIFKGIVSEVMAS---GFDGIFLVATN  123 (326)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT---TCCSEEEECSS
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHHHHHh---cCCeEEEEcCC
Confidence            541                234555555 33   45667766664

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.42  E-value=1e-06  Score=80.93  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCChH--HHHHHHHHHHC----CCeEEEEcCChhh-hH----HH----Hc----CceEecChHHHhccCCCE
Q 023897           10 STLKIGIIGFGPF--GQFLAKTMIKQ----GHILRATSRTDHS-QL----CH----RS----GISFFSDKRAFLEADNDV   70 (275)
Q Consensus        10 ~~~~I~IIG~G~m--G~sla~~L~~~----g~~V~~~dr~~~~-~~----a~----~~----g~~~~~~~~~~~~~~aD~   70 (275)
                      .+|||+|||+|.|  |.+++..|...    |++|++||++++. +.    ..    ..    .+..+++..++ +++||+
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~ea-l~dAD~   80 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDV-IIDADF   80 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH-HTTCSE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHH-hCCCCE
Confidence            3579999999996  56667788654    7899999999852 11    11    11    23456787665 489999


Q ss_pred             EEEecCchh
Q 023897           71 ILISTSILS   79 (275)
Q Consensus        71 iilavp~~~   79 (275)
                      ||+++|...
T Consensus        81 VIiaagv~~   89 (480)
T 1obb_A           81 VINTAMVGG   89 (480)
T ss_dssp             EEECCCTTH
T ss_pred             EEECCCccc
Confidence            999998744

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.42  E-value=9.5e-07  Score=80.58  Aligned_cols=68  Identities=18%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChH--HHHHHHHHHH----CCCeEEEEcCChhh-hHHHH---------cCceEecChHHHhccCCCEEE
Q 023897            9 SSTLKIGIIGFGPF--GQFLAKTMIK----QGHILRATSRTDHS-QLCHR---------SGISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus         9 ~~~~~I~IIG~G~m--G~sla~~L~~----~g~~V~~~dr~~~~-~~a~~---------~g~~~~~~~~~~~~~~aD~ii   72 (275)
                      |+.+||+|||+|.|  |..++..|..    .| +|++||++++. +....         ..++.+++++++ +++||+||
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eA-l~dADfVI   80 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKA-LSAADIVI   80 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHH-HTTCSEEE
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHH-hcCCCEEE
Confidence            45679999999995  7899988886    46 99999999842 21111         134677899886 48999999


Q ss_pred             EecCch
Q 023897           73 ISTSIL   78 (275)
Q Consensus        73 lavp~~   78 (275)
                      +++++.
T Consensus        81 ~airvG   86 (450)
T 3fef_A           81 ISILPG   86 (450)
T ss_dssp             ECCCSS
T ss_pred             eccccC
Confidence            999863

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.42  E-value=5.7e-07  Score=79.38  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHH-H-CCCeE-EEEcCChhh--hHHHHcCc-eEecChHHHhcc--CCCEEEEecCchhH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMI-K-QGHIL-RATSRTDHS--QLCHRSGI-SFFSDKRAFLEA--DNDVILISTSILSL   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~-~-~g~~V-~~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~--~aD~iilavp~~~~   80 (275)
                      +.++||+|||+|.||..++..|. + .+++| .++|++++.  ..+.+.|+ ..+++.++++ +  +.|+|++|+|+...
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l-~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMI-DTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHH-TTSCCSEEEECSCGGGH
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHh-cCCCCCEEEEeCChHhH
Confidence            45679999999999999999998 5 36775 478999853  34556677 6778888864 4  68999999999887


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .+++...
T Consensus        85 ~~~~~~a   91 (346)
T 3cea_A           85 PEMTIYA   91 (346)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.42  E-value=1.2e-06  Score=76.45  Aligned_cols=90  Identities=13%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhhhHHH----HcCc--eEecChHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHSQLCH----RSGI--SFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ...+|+|||+|.||.+.+.+|.+. + .+|.+|||+...+.+.    +.|+  ... +++++ +.++|+||.|||...  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~-~~~ea-v~~aDIVi~aT~s~~--  195 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMA-APADI-AAQADIVVTATRSTT--  195 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEEC-CHHHH-HHHCSEEEECCCCSS--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEe-CHHHH-HhhCCEEEEccCCCC--
Confidence            457899999999999999999873 3 5899999993122222    2365  345 88886 489999999999752  


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      .++.. ..  +++|+.|+++++.+.
T Consensus       196 pvl~~-~~--l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          196 PLFAG-QA--LRAGAFVGAIGSSLP  217 (313)
T ss_dssp             CSSCG-GG--CCTTCEEEECCCSST
T ss_pred             cccCH-HH--cCCCcEEEECCCCCC
Confidence            22211 23  789999999998765

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.42  E-value=6.4e-07  Score=78.57  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CeEEEEcCChHHHHH-HHHHHHCCCeEE-EEcCChhh--hHHHHcCce-EecChHHHhcc--CCCEEEEecCchhHHHHh
Q 023897           12 LKIGIIGFGPFGQFL-AKTMIKQGHILR-ATSRTDHS--QLCHRSGIS-FFSDKRAFLEA--DNDVILISTSILSLSEVL   84 (275)
Q Consensus        12 ~~I~IIG~G~mG~sl-a~~L~~~g~~V~-~~dr~~~~--~~a~~~g~~-~~~~~~~~~~~--~aD~iilavp~~~~~~v~   84 (275)
                      +||+|||+|.||..+ +..|.+.+++++ ++|++++.  ..+.+.|+. .+++.++++ +  +.|+|++|+|++...+++
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l-~~~~~D~V~i~tp~~~h~~~~   79 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELV-GDPDVDAVYVSTTNELHREQT   79 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHH-TCTTCCEEEECSCGGGHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHh-cCCCCCEEEEeCChhHhHHHH
Confidence            589999999999998 888887778765 78999853  345666774 678888864 4  589999999998877776


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ...
T Consensus        80 ~~a   82 (332)
T 2glx_A           80 LAA   82 (332)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.41  E-value=1.7e-07  Score=80.31  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceE--ecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISF--FSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ...+++.|||+|.+|.+++..|.+.|. +|++++|+++.......++..  ..++.++ +.++|+||-|||......+-.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~-~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESH-LDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHT-GGGCSEEEECCC-------CC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHH-hcCCCEEEECccCCCCCCCcC
Confidence            356789999999999999999999998 899999998532211122221  2344553 478999999999764333211


Q ss_pred             cCCCCCCCCCcEEEeCCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .++...++++.+++|+....
T Consensus       194 ~l~~~~l~~~~~V~D~vY~P  213 (277)
T 3don_A          194 VISLNRLASHTLVSDIVYNP  213 (277)
T ss_dssp             SSCCTTCCSSCEEEESCCSS
T ss_pred             CCCHHHcCCCCEEEEecCCC
Confidence            12112278899999987653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.41  E-value=1.1e-06  Score=78.97  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----------------------------cC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----------------------------SD   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----------------------------~~   59 (275)
                      ...||+|||+|.+|...++.+...|.+|+++|+++. .+.+.+.|....                             .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~  268 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL  268 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence            356999999999999999999999999999999985 455556665421                             13


Q ss_pred             hHHHhccCCCEEEEec--Cchh-----HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           60 KRAFLEADNDVILIST--SILS-----LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        60 ~~~~~~~~aD~iilav--p~~~-----~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.++ +.++|+||.|+  |...     ..+.++   .  +++|.+|+|++.
T Consensus       269 l~e~-l~~aDVVI~tvlipg~~ap~Lvt~emv~---~--Mk~GsVIVDvA~  313 (405)
T 4dio_A          269 VAEH-IAKQDIVITTALIPGRPAPRLVTREMLD---S--MKPGSVVVDLAV  313 (405)
T ss_dssp             HHHH-HHTCSEEEECCCCSSSCCCCCBCHHHHT---T--SCTTCEEEETTG
T ss_pred             HHHH-hcCCCEEEECCcCCCCCCCEEecHHHHh---c--CCCCCEEEEEeC
Confidence            4554 47999999985  4321     233333   3  788999999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.41  E-value=2e-06  Score=74.93  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-h-HHH--Hc-------C--ceEecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-Q-LCH--RS-------G--ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~-~a~--~~-------g--~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +|||+|||+|.||.+++..|+..|+ +|.++|++++. + .+.  ..       .  +..+++.++  ++++|+||++++
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a--~~~aD~Vi~a~g   79 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD--TANSDVIVVTSG   79 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--GTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHH--HCCCCEEEEcCC
Confidence            3799999999999999999999997 99999998742 1 111  11       2  234467743  489999999974


Q ss_pred             ch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 IL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ..                .+.++.+.+ .+   .++.+++.+++
T Consensus        80 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~vi~~tN  120 (309)
T 1ur5_A           80 APRKPGMSREDLIKVNADITRACISQAAPL---SPNAVIIMVNN  120 (309)
T ss_dssp             C--------CHHHHHHHHHHHHHHHHHGGG---CTTCEEEECCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEcCC
Confidence            32                234566666 43   36666665543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.40  E-value=2.6e-06  Score=74.59  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HH--HH-------cCc--eEecChHHHhccCCCEEEEe
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LC--HR-------SGI--SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a--~~-------~g~--~~~~~~~~~~~~~aD~iila   74 (275)
                      |.++||+|||+|.||.++|..|+..|+ +|.++|++++..  .+  .+       ...  ..+++.+ + +++||+||++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~-a-~~~aDvVIi~   80 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYK-D-LENSDVVIVT   80 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-G-GTTCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHH-H-HCCCCEEEEc
Confidence            556899999999999999999999988 999999987421  11  11       122  3345554 3 4899999999


Q ss_pred             cCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           75 TSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        75 vp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .+.                ..+.++.+.+ .+   .++.+++.+++
T Consensus        81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~---~p~a~vivvtN  123 (321)
T 3p7m_A           81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN---CPNAFVICITN  123 (321)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH---CTTCEEEECCS
T ss_pred             CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH---CCCcEEEEecC
Confidence            643                1234555555 43   36667666654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.39  E-value=2.4e-06  Score=74.57  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC--hhhh--HHHH---------cC--ceEecChHHHhccCCCEEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT--DHSQ--LCHR---------SG--ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~--~~~~--~a~~---------~g--~~~~~~~~~~~~~~aD~ii   72 (275)
                      +..+||+|||+|.||.++|..|+..|+ +|.++|++  +...  .+.+         ..  +..+++.++  +++||+||
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a--~~~aDvVI   83 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD--TADSDVVV   83 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG--GTTCSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH--hCCCCEEE
Confidence            456799999999999999999999999 99999999  3221  1110         11  233455554  48999999


Q ss_pred             EecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           73 ISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        73 lavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ++....                .+.++.+.+ .+   .++.+++.+++
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~---~p~a~vlvvsN  128 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH---SPNAIIVVLTN  128 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH---CTTCEEEECCS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEECCC
Confidence            997431                234555555 33   45667766654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.38  E-value=4e-07  Score=79.70  Aligned_cols=77  Identities=23%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             CCeEEEEcCChHHH-HHHHHHHHC-CCeEEEEcCChhh--hHHHHcCceE-ecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQ-FLAKTMIKQ-GHILRATSRTDHS--QLCHRSGISF-FSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~-sla~~L~~~-g~~V~~~dr~~~~--~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ++||+|||+|.||. .++..|.+. +++|+++|++++.  ..+.+.|+.. ..+..+.+..+.|+|++|+|++...+++.
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~   81 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA   81 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence            46999999999998 599999875 6777799999853  3456667753 33444432368999999999998777776


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      ..
T Consensus        82 ~a   83 (323)
T 1xea_A           82 FF   83 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.38  E-value=3.2e-07  Score=80.76  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhcC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNSL   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~l   87 (275)
                      ...+++||||+|.+|+.+|+.+...|.+|.+||+.+.. ...+.++.. .+++++ +++||+|++++|-. .+..++.+-
T Consensus       139 l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~-~~~~~~~~~-~~l~el-l~~sDivslh~Plt~~T~~li~~~  215 (334)
T 3kb6_A          139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE-DLKEKGCVY-TSLDEL-LKESDVISLHVPYTKETHHMINEE  215 (334)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHTTCEE-CCHHHH-HHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             ecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch-hhhhcCcee-cCHHHH-HhhCCEEEEcCCCChhhccCcCHH
Confidence            35678999999999999999999999999999987632 223445554 578886 58999999999964 233333211


Q ss_pred             --CCCCCCCCcEEEeCCC
Q 023897           88 --PVHCLQRRTLIADVLS  103 (275)
Q Consensus        88 --~~~~l~~~~iv~d~~s  103 (275)
                        ..  ++++.++++++-
T Consensus       216 ~l~~--mk~~a~lIN~aR  231 (334)
T 3kb6_A          216 RISL--MKDGVYLINTAR  231 (334)
T ss_dssp             HHHH--SCTTEEEEECSC
T ss_pred             HHhh--cCCCeEEEecCc
Confidence              23  788999999874

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.38  E-value=1.4e-06  Score=71.86  Aligned_cols=75  Identities=19%  Similarity=0.208  Sum_probs=55.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hH-HHHcCceEe----cC---hHHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QL-CHRSGISFF----SD---KRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~-a~~~g~~~~----~~---~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |||.|+|+|.+|..+++.|.+.|++|+++|++++. .. +...|..+.    ++   +.++-+.++|+||++++.+....
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            68999999999999999999999999999999853 33 344555321    12   22322478999999999986544


Q ss_pred             Hhhc
Q 023897           83 VLNS   86 (275)
Q Consensus        83 v~~~   86 (275)
                      .+..
T Consensus        81 ~~~~   84 (218)
T 3l4b_C           81 FIAQ   84 (218)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.37  E-value=6.8e-07  Score=68.10  Aligned_cols=91  Identities=12%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cChHHH---hccCCCEEEEecCch-hH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDKRAF---LEADNDVILISTSIL-SL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~~~---~~~~aD~iilavp~~-~~   80 (275)
                      .+++|.|+|+|.+|..++..|.+.|++|+++|++++ .....+.+....    .+.+.+   -..++|+||++++.+ ..
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   84 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   84 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHH
Confidence            346799999999999999999999999999999875 333333344321    122211   025789999999974 32


Q ss_pred             -HHHhhcCCCCCCCCCcEEEeCC
Q 023897           81 -SEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        81 -~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                       ..+......  +.+..+++...
T Consensus        85 ~~~~~~~~~~--~~~~~ii~~~~  105 (144)
T 2hmt_A           85 STLTTLLLKE--LDIPNIWVKAQ  105 (144)
T ss_dssp             HHHHHHHHHH--TTCSEEEEECC
T ss_pred             HHHHHHHHHH--cCCCeEEEEeC
Confidence             233332222  33445555443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.36  E-value=2e-06  Score=75.41  Aligned_cols=89  Identities=15%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh--hHHHHc-----CceEecChHHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS--QLCHRS-----GISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~--~~a~~~-----g~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ..++|+|||+|.+|.+++.+|.+.  ..+|.+|||+++.  +.+.+.     ++. ..+++++ + ++|+|+.|||... 
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~-v-~aDvVi~aTp~~~-  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEA-S-RCDVLVTTTPSRK-  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHH-T-SSSEEEECCCCSS-
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHH-h-CCCEEEEeeCCCC-
Confidence            457899999999999999999873  3689999999853  233322     245 6788886 6 8999999999753 


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                       .++.. ..  +++|+.+.++++.+.
T Consensus       200 -pv~~~-~~--l~~G~~V~~ig~~~p  221 (322)
T 1omo_A          200 -PVVKA-EW--VEEGTHINAIGADGP  221 (322)
T ss_dssp             -CCBCG-GG--CCTTCEEEECSCCST
T ss_pred             -ceecH-HH--cCCCeEEEECCCCCC
Confidence             22211 22  678899998876543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.36  E-value=6.1e-07  Score=80.84  Aligned_cols=92  Identities=12%  Similarity=0.192  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-H-HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-L-SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~-~~v~   84 (275)
                      ....++|+|+|+|.+|..+|+.|+..|.+|+++|+++. ...+...|... .+++++ +..+|+|+.|+.... + .+.+
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leea-l~~ADIVi~atgt~~lI~~e~l  294 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEV-IRQVDIVITCTGNKNVVTREHL  294 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHH-TTTCSEEEECSSCSCSBCHHHH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHH-HhcCCEEEECCCCcccCCHHHH
Confidence            34668999999999999999999999999999999985 34556667654 478886 589999999844221 1 2333


Q ss_pred             hcCCCCCCCCCcEEEeCCCCCh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      ..     ++++.++++++....
T Consensus       295 ~~-----MK~gailINvgrg~~  311 (435)
T 3gvp_A          295 DR-----MKNSCIVCNMGHSNT  311 (435)
T ss_dssp             HH-----SCTTEEEEECSSTTT
T ss_pred             Hh-----cCCCcEEEEecCCCc
Confidence            33     678899999886544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.36  E-value=6.9e-07  Score=77.44  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCc---eEe--cChHHHhccCCCEEEEecCchhH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGI---SFF--SDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~---~~~--~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ...++|+|||+|.||.+++..|.+.|. +|++++|+++.  ..+.+.+.   ...  .++.+. +.++|+||.|+|....
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~-~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETR-LAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHT-GGGCSEEEECSCTTCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhh-hccCCEEEECCCCCCC
Confidence            456799999999999999999999997 99999999853  34444433   222  234453 4789999999997643


Q ss_pred             HHHhh-cCCCCCCCCCcEEEeCCCC
Q 023897           81 SEVLN-SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        81 ~~v~~-~l~~~~l~~~~iv~d~~s~  104 (275)
                      ...-. .++...++++.+++|+...
T Consensus       218 ~~~~~~~i~~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          218 PRVEVQPLSLERLRPGVIVSDIIYN  242 (297)
T ss_dssp             SCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCHHHcCCCCEEEEcCCC
Confidence            11000 1211126788999998864

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.35  E-value=6.3e-07  Score=79.73  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHc-CceEecChHHHhcc--CCCEEEEecCchhH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRS-GISFFSDKRAFLEA--DNDVILISTSILSL   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~-g~~~~~~~~~~~~~--~aD~iilavp~~~~   80 (275)
                      |+++||||||+|.||.. ++..|.+. +.+|+ ++|++++.  ..+.+. +...+++.++++ +  +.|+|++|+|+...
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll-~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAML-NQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHH-HHSCCSEEEECSCHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHh-cCCCCCEEEEcCCcHHH
Confidence            45689999999999995 88998876 67766 78999853  334444 457788999864 4  45999999999887


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .+++...
T Consensus        82 ~~~~~~a   88 (359)
T 3m2t_A           82 FEMGLLA   88 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776665

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.34  E-value=2.2e-06  Score=76.90  Aligned_cols=167  Identities=14%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-------hhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-------HSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-------~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      .+.++|+|||+|.-|.+-|..|++.|.+|++--|..       +...|.+.|.++. +..++ ++.+|+|++-+|+..-.
T Consensus        35 lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA-~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEEL-IPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHH-GGGCSEEEECSCGGGHH
T ss_pred             HcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHH-HHhCCEEEEeCChhhHH
Confidence            466899999999999999999999999999876632       2356778898875 56675 58999999999999989


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCC-CCCc--CCccccceeeeeee-c-CChHH
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP-ESGQ--NGWKDFAFVYEKVR-I-RDEAT  155 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~-~~~~--~~~~g~~~~~~~~~-~-~~~~~  155 (275)
                      ++.+.+ |+  +++|..+.=.-+.  -+... .-..|.++.++-.-|=.+. ....  ..-.|.|.++.-.. . .+..+
T Consensus       113 ~vy~~I~p~--lk~G~~L~faHGF--nI~~~-~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a  187 (491)
T 3ulk_A          113 DVVRTVQPL--MKDGAALGYSHGF--NIVEV-GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG  187 (491)
T ss_dssp             HHHHHHGGG--SCTTCEEEESSCH--HHHTT-CCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCH
T ss_pred             HHHHHHHhh--CCCCCEEEecCcc--ccccc-ccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhH
Confidence            999999 88  9999887633221  11110 0112445666554553211 1100  01146777665421 1 13456


Q ss_pred             HHHHHHHHHHcCCe---EEEcChh---HHHHHH
Q 023897          156 CSSFLRIFESEGCK---MLEMSCE---EHDKVA  182 (275)
Q Consensus       156 ~~~~~~l~~~~G~~---v~~~~~~---~hD~~~  182 (275)
                      .+........+|+.   ++.++-.   +-|...
T Consensus       188 ~~~AlayA~aiG~~raGvieTTF~eEtetDLfG  220 (491)
T 3ulk_A          188 MAIAKAWAAATGGHRAGVLESSFVAEVKSDLMG  220 (491)
T ss_dssp             HHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcCceeeccHHHHHHHHHHh
Confidence            77777888888853   5666533   455443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.34  E-value=2.8e-06  Score=74.29  Aligned_cols=90  Identities=22%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh-h-HHHH--c------CceEecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS-Q-LCHR--S------GISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~-~-~a~~--~------g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      .++||+|||+|.+|.+++..|...|+  +|.++|++++. + .+.+  .      .+++..+..++ +++||+||++++.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a-~~~aDvVii~~g~   84 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD-VKDCDVIVVTAGA   84 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG-GTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH-hCCCCEEEEcCCC
Confidence            45799999999999999999999987  89999998742 1 1221  1      12222222343 4899999999876


Q ss_pred             hh----------------HHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 LS----------------LSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~----------------~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ..                +.++.+.+ .+   .++.+++.+++
T Consensus        85 p~k~g~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  124 (318)
T 1y6j_A           85 NRKPGETRLDLAKKNVMIAKEVTQNIMKY---YNHGVILVVSN  124 (318)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHH---CCSCEEEECSS
T ss_pred             CCCCCcCHHHHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Confidence            32                45666666 43   45666665543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.33  E-value=1.3e-06  Score=77.90  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v   83 (275)
                      +.++||||||+|.||.. .+..+.+. +++|+ ++|++++...+...++..+++.++++ +  +.|+|++|+|+....++
T Consensus         5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~H~~~   83 (364)
T 3e82_A            5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAV-QHPDVDLVVIASPNATHAPL   83 (364)
T ss_dssp             --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHH-TCTTCSEEEECSCGGGHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHh-cCCCCCEEEEeCChHHHHHH
Confidence            45679999999999996 67777765 67775 68998854333334678889999964 5  68999999999887776


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        84 ~~~a   87 (364)
T 3e82_A           84 ARLA   87 (364)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.32  E-value=2.6e-06  Score=74.00  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh-----hHHHH--cCceEecChHHHhccCCCEEEEecC----
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS-----QLCHR--SGISFFSDKRAFLEADNDVILISTS----   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~-----~~a~~--~g~~~~~~~~~~~~~~aD~iilavp----   76 (275)
                      .++||+|||+|.||..+|..+...|+  +|.++|++++.     .....  ..+..+++.++  +++||+||+++.    
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~--l~~aD~Vi~aag~~~p   90 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSA--SAHSKVVIFTVNSLGS   90 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCGGG--GTTCSEEEECCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCHHH--HCCCCEEEEcCCCCCC
Confidence            45799999999999999999999998  99999998741     11111  13456677744  489999999972    


Q ss_pred             ---------c--hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHh
Q 023897           77 ---------I--LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQ  114 (275)
Q Consensus        77 ---------~--~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~  114 (275)
                               .  ..+.+++.++ .+  . ++.+++.+++.-......+.+
T Consensus        91 G~tR~dl~~~n~~i~~~i~~~i~~~--~-p~a~iiv~sNP~~~~t~~~~~  137 (303)
T 2i6t_A           91 SQSYLDVVQSNVDMFRALVPALGHY--S-QHSVLLVASQPVEIMTYVTWK  137 (303)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHH--T-TTCEEEECSSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHh--C-CCeEEEEcCChHHHHHHHHHH
Confidence                     2  1245666776 44  3 667766565533333344444

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.31  E-value=7.8e-07  Score=77.93  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeE-EEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHIL-RATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V-~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      +++||+|||+|+||+.+++.+.+. +.++ .++|+++....+  .|+..+++.+++ +.++|+|++|+|+....+.+...
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~--~gv~~~~d~~~l-l~~~DvViiatp~~~h~~~~~~a   78 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKH-ADDVDVLFLCMGSATDIPEQAPK   78 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGT-TTTCSEEEECSCTTTHHHHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc--CCCceeCCHHHH-hcCCCEEEEcCCcHHHHHHHHHH
Confidence            467999999999999999999887 4565 478888643222  566666788875 37899999999998655444443


Q ss_pred             CCCCCCCCcEEEe
Q 023897           88 PVHCLQRRTLIAD  100 (275)
Q Consensus        88 ~~~~l~~~~iv~d  100 (275)
                          +..|..+++
T Consensus        79 ----l~aG~~Vv~   87 (320)
T 1f06_A           79 ----FAQFACTVD   87 (320)
T ss_dssp             ----HTTTSEEEC
T ss_pred             ----HHCCCEEEE
Confidence                344555554

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.31  E-value=1.2e-06  Score=77.59  Aligned_cols=79  Identities=20%  Similarity=0.295  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHHh
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEVL   84 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v~   84 (275)
                      ++++||||||+|.||.. .+..+.+. +++|. ++|++++...+...++..+++.++++. .+.|+|++|+|+....+++
T Consensus         5 ~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   84 (352)
T 3kux_A            5 ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA   84 (352)
T ss_dssp             TCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            45679999999999997 78888776 66766 689988643333346678899998642 2489999999998777766


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ...
T Consensus        85 ~~a   87 (352)
T 3kux_A           85 QSA   87 (352)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.30  E-value=2.3e-06  Score=76.05  Aligned_cols=79  Identities=11%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcC----ceEecChHHHhc-cCCCEEEEecCchh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSG----ISFFSDKRAFLE-ADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g----~~~~~~~~~~~~-~~aD~iilavp~~~   79 (275)
                      +.++||+|||+|.||..++..|.+. +++++ ++|++++.  ..+.+.|    ...+++.++++. .+.|+|++|+|+..
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   83 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL   83 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence            4567999999999999999999886 56654 78999853  3455666    467788888642 25899999999998


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      ..+++...
T Consensus        84 h~~~~~~a   91 (362)
T 1ydw_A           84 HVEWAIKA   91 (362)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777665

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.30  E-value=7.1e-07  Score=79.57  Aligned_cols=78  Identities=9%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE------ecChHHHhccCCCEEEEecCchh
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF------FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~------~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      +.-.+|||+|||+|.+|+.++..|++. ++|.++|++.+. +.+.+.....      ..++.++ ++++|+||.|+|+..
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~-~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEV-MKEFELVIGALPGFL   89 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHH-HTTCSEEEECCCGGG
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHH-HhCCCEEEEecCCcc
Confidence            345678999999999999999999764 799999999853 3332211111      1223443 479999999999986


Q ss_pred             HHHHhhc
Q 023897           80 LSEVLNS   86 (275)
Q Consensus        80 ~~~v~~~   86 (275)
                      ...+++.
T Consensus        90 ~~~v~~~   96 (365)
T 3abi_A           90 GFKSIKA   96 (365)
T ss_dssp             HHHHHHH
T ss_pred             cchHHHH
Confidence            5555554

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.29  E-value=4.6e-06  Score=72.69  Aligned_cols=88  Identities=17%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceEe-cChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISFF-SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~~-~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+|.||.++|..|+..|+  +|.++|++++..  .+.+         ....+. ++..++ +++||+||++.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a-~~~aDvVii~ag~   79 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGP-TEDSDVCIITAGL   79 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGG-GTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHH-hCCCCEEEECCCC
Confidence            799999999999999999999886  899999987421  1111         123332 233443 4899999999754


Q ss_pred             h----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 L----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                .+.++.+.+ .   ..++.+++.+++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~---~~p~a~vivvtN  119 (314)
T 3nep_X           80 PRSPGMSRDDLLAKNTEIVGGVTEQFVE---GSPDSTIIVVAN  119 (314)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHT---TCTTCEEEECCS
T ss_pred             CCCCCCCHHHHHHhhHHHHHHHHHHHHH---hCCCcEEEecCC
Confidence            2                134455555 3   346667776664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.28  E-value=2.9e-06  Score=65.85  Aligned_cols=92  Identities=8%  Similarity=-0.054  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-h-hh---HHHHcCceEe----cC---hHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-H-SQ---LCHRSGISFF----SD---KRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~-~~---~a~~~g~~~~----~~---~~~~~~~~aD~iilavp~   77 (275)
                      ..++|.|+|+|.+|..+++.|.+.|++|+++++++ + .+   .....|+.+.    ++   +.++-+.++|+|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            45689999999999999999999999999999974 3 21   1223354321    12   223214789999999998


Q ss_pred             hhHHHHhhcC-CCCCC-CCCcEEEeCCC
Q 023897           78 LSLSEVLNSL-PVHCL-QRRTLIADVLS  103 (275)
Q Consensus        78 ~~~~~v~~~l-~~~~l-~~~~iv~d~~s  103 (275)
                      +.....+... ..  + +...+++.+.+
T Consensus        82 d~~n~~~~~~a~~--~~~~~~ii~~~~~  107 (153)
T 1id1_A           82 DADNAFVVLSAKD--MSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHHHHHHHHHHH--HTSSSCEEEECSS
T ss_pred             hHHHHHHHHHHHH--HCCCCEEEEEECC
Confidence            7644333332 22  2 33456665543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.28  E-value=1.5e-06  Score=76.44  Aligned_cols=77  Identities=12%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC---CeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEecCchhHHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG---HILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iilavp~~~~~~   82 (275)
                      ++||||||+|.||..++..|.+.+   ++|+ ++|++++.  ..+.+.|+ ..+++.++++. .+.|+|++|+|+....+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   81 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA   81 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            469999999999999999998764   3444 68999853  45666787 57889998642 26899999999998777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        82 ~~~~a   86 (334)
T 3ohs_X           82 AVMLC   86 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76665

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.28  E-value=6.7e-06  Score=71.85  Aligned_cols=91  Identities=12%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh-h-HHHH---------cCceEecChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS-Q-LCHR---------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~-~-~a~~---------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      +..+||+|||+|.+|.+++..|...|.  +|.++|++++. + .+..         ..+.+..+..++ +++||+||+++
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a-~~~aDvVvi~a   82 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSD-CHDADLVVICA   82 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGG-GTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHH-hCCCCEEEECC
Confidence            455899999999999999999998884  89999998742 1 1111         122333344554 48999999998


Q ss_pred             Cch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +..                .+.++.+.+ .+   .++.+++.+++
T Consensus        83 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  124 (317)
T 3d0o_A           83 GAAQKPGETRLDLVSKNLKIFKSIVGEVMAS---KFDGIFLVATN  124 (317)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT---TCCSEEEECSS
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Confidence            652                234555555 33   45666665553

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.26  E-value=1.5e-06  Score=79.46  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             CCCCCCeEEEEcC----ChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCce---EecChHHHhc-cCCCEEEE
Q 023897            7 SSSSTLKIGIIGF----GPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGIS---FFSDKRAFLE-ADNDVILI   73 (275)
Q Consensus         7 ~~~~~~~I~IIG~----G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~---~~~~~~~~~~-~~aD~iil   73 (275)
                      +++.++||+|||+    |.||...+..|.+.  +++|+ ++|++++.  ..+.+.|+.   .+++.++++. .+.|+|++
T Consensus        16 m~m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i   95 (438)
T 3btv_A           16 PNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVI   95 (438)
T ss_dssp             ---CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEE
T ss_pred             cccCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEE
Confidence            3345679999999    99999999999986  56764 78999853  345566764   7889998642 26899999


Q ss_pred             ecCchhHHHHhhcC
Q 023897           74 STSILSLSEVLNSL   87 (275)
Q Consensus        74 avp~~~~~~v~~~l   87 (275)
                      |+|+....+++...
T Consensus        96 ~tp~~~H~~~~~~a  109 (438)
T 3btv_A           96 AIQVASHYEVVMPL  109 (438)
T ss_dssp             CSCHHHHHHHHHHH
T ss_pred             eCCcHHHHHHHHHH
Confidence            99998766666554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.26  E-value=2.2e-06  Score=76.77  Aligned_cols=89  Identities=9%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-cCceE------ecChHHHhccCCCEEEEecCchh-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-SGISF------FSDKRAFLEADNDVILISTSILS-   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-~g~~~------~~~~~~~~~~~aD~iilavp~~~-   79 (275)
                      ....+|+|||+|.+|..+++.++..|.+|+++|++++ .+.+.+ .|...      ..++++. +.++|+||.|++... 
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~-l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGA-VKRADLVIGAVLVPGA  244 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHH-HHHCSEEEECCCCTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHH-HcCCCEEEECCCcCCC
Confidence            4567999999999999999999999999999999985 333433 45431      2234554 478999999886432 


Q ss_pred             ------HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           80 ------LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        80 ------~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                            ..+.+   ..  ++++.+++|++.
T Consensus       245 ~t~~li~~~~l---~~--mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLVSNSLV---AH--MKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCBCHHHH---TT--SCTTCEEEEGGG
T ss_pred             CCcceecHHHH---hc--CCCCcEEEEEec
Confidence                  23333   33  678889999873

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.25  E-value=2.8e-06  Score=74.65  Aligned_cols=78  Identities=12%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCChHHH-HHHHHHHHCCCeE-EEEcCChhh--hHHHHc-CceEecChHHHhcc--CCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQ-FLAKTMIKQGHIL-RATSRTDHS--QLCHRS-GISFFSDKRAFLEA--DNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~-sla~~L~~~g~~V-~~~dr~~~~--~~a~~~-g~~~~~~~~~~~~~--~aD~iilavp~~~~~   81 (275)
                      |+++||||||+|.+|. .++..|...+++| .++|++++.  ..+.+. +...+++.++++ +  +.|+|++|+|+....
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   80 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLI-TDASIDLIACAVIPCDRA   80 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHH-TCTTCCEEEECSCGGGHH
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHh-hCCCCCEEEEeCChhhHH
Confidence            4568999999999996 6788887778886 478999853  345555 567788998864 4  689999999998777


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      ++....
T Consensus        81 ~~~~~a   86 (336)
T 2p2s_A           81 ELALRT   86 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.24  E-value=1.9e-06  Score=76.62  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhhhHHHHc-CceEecChHHHhcc--CCCEEEEecCchhHHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHSQLCHRS-GISFFSDKRAFLEA--DNDVILISTSILSLSE   82 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~~~a~~~-g~~~~~~~~~~~~~--~aD~iilavp~~~~~~   82 (275)
                      ++++||||||+|.||.. .+..+.+. +++|+ ++|++++. .+.+. ++..+++.++++ +  +.|+|++|+|+....+
T Consensus         3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll-~~~~vD~V~i~tp~~~H~~   80 (358)
T 3gdo_A            3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFPDAEVVHELEEIT-NDPAIELVIVTTPSGLHYE   80 (358)
T ss_dssp             TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCTTSEEESSTHHHH-TCTTCCEEEECSCTTTHHH
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCceECCHHHHh-cCCCCCEEEEcCCcHHHHH
Confidence            35679999999999996 67777765 67765 68888754 23333 678889999864 5  6899999999987777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        81 ~~~~a   85 (358)
T 3gdo_A           81 HTMAC   85 (358)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.24  E-value=8.7e-06  Score=70.23  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------cC----ceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------SG----ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~g----~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.+|+++|..|..++.  ++.++|.++...  .+.+       .+    +....+.++  ++++|+|+++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~--~~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL--LKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG--GTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH--hCCCCEEEEecC
Confidence            799999999999999999988875  899999987421  1211       11    123455655  389999999864


Q ss_pred             c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                ..+.++...+ .+   .++.+++-+++
T Consensus        79 ~prkpGmtR~dLl~~Na~I~~~i~~~i~~~---~p~aivlvvsN  119 (294)
T 2x0j_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVEN---APESKILVVTN  119 (294)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHHTT---STTCEEEECSS
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHhc---CCceEEEEecC
Confidence            3                1245566666 43   45566665554

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.24  E-value=2.9e-06  Score=74.96  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEecCchhHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILISTSILSLS   81 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iilavp~~~~~   81 (275)
                      ..|+||||||+|.||.. ++..+.+. +.+|+ ++|++++.  +.+.+.|+ ..+++.++++. .+.|+|++|+|+....
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH
Confidence            45679999999999975 57777775 56766 68999853  46677887 57899999642 3579999999998776


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      ++....
T Consensus       101 ~~~~~a  106 (350)
T 4had_A          101 EWSIKA  106 (350)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.23  E-value=8.5e-06  Score=71.33  Aligned_cols=92  Identities=15%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHH--H------cCceEecChHHHhccCCCEEEEec
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCH--R------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~--~------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ....+||+|||+|.||+++|..|+..|+  +|.++|++++..  .+.  .      .++.++++..++ +++||+||++.
T Consensus         6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a-~~~aDiVvi~a   84 (326)
T 3vku_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSD-AKDADLVVITA   84 (326)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGG-GTTCSEEEECC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHH-hcCCCEEEECC
Confidence            3456899999999999999999999887  899999987521  111  1      133444444444 48999999996


Q ss_pred             Cch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ...                .+.++.+.+ .+   .++.+++.+++
T Consensus        85 g~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~---~p~a~ilvvtN  126 (326)
T 3vku_A           85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS---GFNGIFLVAAN  126 (326)
T ss_dssp             CCC----------------CHHHHHHHHHTT---TCCSEEEECSS
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEccC
Confidence            531                234555555 43   45666666654

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.23  E-value=1.3e-06  Score=78.66  Aligned_cols=80  Identities=13%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCh---HHHHHHHHHHHCC-CeEE--EEcCChhh--hHHHHcCc---eEecChHHHhcc------CCCE
Q 023897            8 SSSTLKIGIIGFGP---FGQFLAKTMIKQG-HILR--ATSRTDHS--QLCHRSGI---SFFSDKRAFLEA------DNDV   70 (275)
Q Consensus         8 ~~~~~~I~IIG~G~---mG~sla~~L~~~g-~~V~--~~dr~~~~--~~a~~~g~---~~~~~~~~~~~~------~aD~   70 (275)
                      .|+++||||||+|.   ||...+..+...+ ++++  ++|++++.  ..+.+.|+   ..+++.++++..      +.|+
T Consensus         9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~   88 (398)
T 3dty_A            9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQA   88 (398)
T ss_dssp             SCSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred             ccCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCE
Confidence            45668999999999   9999999888765 6766  47999853  45677888   578899986421      3899


Q ss_pred             EEEecCchhHHHHhhcC
Q 023897           71 ILISTSILSLSEVLNSL   87 (275)
Q Consensus        71 iilavp~~~~~~v~~~l   87 (275)
                      |++|+|+....+++...
T Consensus        89 V~i~tp~~~H~~~~~~a  105 (398)
T 3dty_A           89 VSIATPNGTHYSITKAA  105 (398)
T ss_dssp             EEEESCGGGHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHH
Confidence            99999998777766655

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.21  E-value=2.1e-06  Score=78.37  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCChHHH-HHHHHHHHC-CCeE-EEEcCChhh--hHHHHcCce-----EecChHHHhcc--CCCEEEEecC
Q 023897            9 SSTLKIGIIGFGPFGQ-FLAKTMIKQ-GHIL-RATSRTDHS--QLCHRSGIS-----FFSDKRAFLEA--DNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~-sla~~L~~~-g~~V-~~~dr~~~~--~~a~~~g~~-----~~~~~~~~~~~--~aD~iilavp   76 (275)
                      +.++||+|||+|.||. .++..|.+. +++| .++|++++.  ..+.+.|+.     .+++.+++ ++  +.|+|++|+|
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~l-l~~~~vD~V~iatp  159 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKI-AKDPKIDAVYIILP  159 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGG-GGCTTCCEEEECSC
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHH-hcCCCCCEEEEcCC
Confidence            4567999999999997 899999875 5665 478999853  345566764     56788885 34  6899999999


Q ss_pred             chhHHHHhhcC
Q 023897           77 ILSLSEVLNSL   87 (275)
Q Consensus        77 ~~~~~~v~~~l   87 (275)
                      +....+++...
T Consensus       160 ~~~h~~~~~~a  170 (433)
T 1h6d_A          160 NSLHAEFAIRA  170 (433)
T ss_dssp             GGGHHHHHHHH
T ss_pred             chhHHHHHHHH
Confidence            99877777665

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.21  E-value=4.9e-06  Score=76.05  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             CCeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCCh--hhhH-----HH----HcC----ceEecChHHHhccCCC
Q 023897           11 TLKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTD--HSQL-----CH----RSG----ISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~--~~~~-----a~----~~g----~~~~~~~~~~~~~~aD   69 (275)
                      .+||+|||+|.+ |.+++..|..+     +.+|.+||+++  +...     +.    ..+    +..+++..++ +++||
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~ea-l~gAD   85 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA-LDGAD   85 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH-HTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHH-hCCCC
Confidence            579999999999 88888888773     46899999998  5311     11    122    2445787665 48999


Q ss_pred             EEEEecCchh------------------------------------HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHH
Q 023897           70 VILISTSILS------------------------------------LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVL  112 (275)
Q Consensus        70 ~iilavp~~~------------------------------------~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l  112 (275)
                      +||+++|...                                    +.++++.+ .   ..++.+++.+++--..+.+.+
T Consensus        86 ~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~---~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           86 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE---LCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH---HCTTCEEEECSSSHHHHHHHH
T ss_pred             EEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHH
Confidence            9999999632                                    34555555 3   356778877765444445566


Q ss_pred             HhhCCCCCceeec
Q 023897          113 LQVLPEEMDVLCT  125 (275)
Q Consensus       113 ~~~l~~~~~~v~~  125 (275)
                      .+..+ ..++++.
T Consensus       163 ~k~~p-~~rViG~  174 (450)
T 1s6y_A          163 LRYTK-QEKVVGL  174 (450)
T ss_dssp             HHHCC-CCCEEEC
T ss_pred             HHhCC-CCCEEEe
Confidence            66653 2356654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.19  E-value=1.2e-05  Score=70.17  Aligned_cols=67  Identities=18%  Similarity=0.222  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh-h-HHHH--------cCceEecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS-Q-LCHR--------SGISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~-~-~a~~--------~g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      +.+||+|||+|.+|.+++..|...+.  +|.++|++++. + .+.+        ..+++..+..++ +++||+||++.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a-~~~aDvVii~ag~   82 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGA   82 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHH-hCCCCEEEECCCC
Confidence            44899999999999999999998876  89999998742 1 1111        123343344454 4899999999865

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.19  E-value=4.2e-06  Score=74.43  Aligned_cols=79  Identities=10%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCChHHH-HHHHHHHHCCCeEE-EEcCChhh--hHHHHcC-ceEecChHHHhcc--CCCEEEEecCchhH
Q 023897            8 SSSTLKIGIIGFGPFGQ-FLAKTMIKQGHILR-ATSRTDHS--QLCHRSG-ISFFSDKRAFLEA--DNDVILISTSILSL   80 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~-sla~~L~~~g~~V~-~~dr~~~~--~~a~~~g-~~~~~~~~~~~~~--~aD~iilavp~~~~   80 (275)
                      +|+++||||||+|.+|. .++..+...+.+|+ ++|++++.  ..+.+.| ...+++.++++ +  +.|+|++|+|+...
T Consensus        23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll-~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           23 MMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEIL-EDENIGLIVSAAVSSER  101 (361)
T ss_dssp             ---CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHH-TCTTCCEEEECCCHHHH
T ss_pred             hccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHh-cCCCCCEEEEeCChHHH
Confidence            34567999999999995 57778877888866 68999853  4566666 57789999964 4  47999999999877


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .+++...
T Consensus       102 ~~~~~~a  108 (361)
T 3u3x_A          102 AELAIRA  108 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766655

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.19  E-value=1.9e-06  Score=76.58  Aligned_cols=77  Identities=21%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhhhHHHHc-CceEecChHHHhccC--CCEEEEecCchhHHH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHSQLCHRS-GISFFSDKRAFLEAD--NDVILISTSILSLSE   82 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~~~a~~~-g~~~~~~~~~~~~~~--aD~iilavp~~~~~~   82 (275)
                      ++++||||||+|.||.. .+..+.+. +++|+ ++|++++. .+.+. ++..+++.++++ ++  .|+|++|+|+....+
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll-~~~~vD~V~i~tp~~~H~~   80 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELT-EDPEIDLIVVNTPDNTHYE   80 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHH-TCTTCCEEEECSCGGGHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHh-cCCCCCEEEEeCChHHHHH
Confidence            45679999999999997 67777775 67765 68888754 23334 677889999864 54  899999999988777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        81 ~~~~a   85 (362)
T 3fhl_A           81 YAGMA   85 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.18  E-value=6.7e-06  Score=72.02  Aligned_cols=89  Identities=12%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHH--H--------cCceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCH--R--------SGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~--~--------~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..+||+|||+|.||.++|..|+..|+  +|.++|++++..  .+.  .        ..+..+++.++  +++||+||++.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~--~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV--SAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS--CSSCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH--hCCCCEEEEeC
Confidence            56899999999999999999999987  899999987421  111  1        11234567765  38999999995


Q ss_pred             Cc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ..                ..+.++.+.+ .+   .++.+++.+++
T Consensus        98 G~p~kpG~tR~dll~~N~~I~k~i~~~I~k~---~P~a~ilvvtN  139 (330)
T 3ldh_A           98 GARQQEGESRLNLVQRNVNIFKFIIPNIVKH---SPDCLKELHPE  139 (330)
T ss_dssp             SCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH---CTTCEEEECSS
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh---CCCceEEeCCC
Confidence            43                1245555666 43   46676666654

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.17  E-value=2.6e-06  Score=77.28  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCh---HHHHHHHHHHHCC-CeEE--EEcCChhh--hHHHHcCc---eEecChHHHhcc------CCCEE
Q 023897            9 SSTLKIGIIGFGP---FGQFLAKTMIKQG-HILR--ATSRTDHS--QLCHRSGI---SFFSDKRAFLEA------DNDVI   71 (275)
Q Consensus         9 ~~~~~I~IIG~G~---mG~sla~~L~~~g-~~V~--~~dr~~~~--~~a~~~g~---~~~~~~~~~~~~------~aD~i   71 (275)
                      |+++||||||+|.   ||...+..+...+ ++++  ++|++++.  +.+.+.|+   ..+++.++++..      +.|+|
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            4567999999999   9999999888775 5765  57999853  45667787   578899986421      38999


Q ss_pred             EEecCchhHHHHhhcC
Q 023897           72 LISTSILSLSEVLNSL   87 (275)
Q Consensus        72 ilavp~~~~~~v~~~l   87 (275)
                      ++|+|+....+++...
T Consensus       115 ~I~tp~~~H~~~~~~a  130 (417)
T 3v5n_A          115 AIVTPNHVHYAAAKEF  130 (417)
T ss_dssp             EECSCTTSHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHH
Confidence            9999998877776665

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.16  E-value=4.5e-06  Score=71.28  Aligned_cols=106  Identities=23%  Similarity=0.292  Sum_probs=69.2

Q ss_pred             CCCCCCCeEEEEc-CChHHHHHHHHHHHC-CCeEEE-EcCChh-h--h----HH-HHcCceEecChHHHhccCCCEEEEe
Q 023897            6 PSSSSTLKIGIIG-FGPFGQFLAKTMIKQ-GHILRA-TSRTDH-S--Q----LC-HRSGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         6 ~~~~~~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~-~dr~~~-~--~----~a-~~~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      |.+|+++||+|+| +|+||+.+++.+.+. ++++.+ +|++.. .  .    .+ ...|+.++++++++ +.++|+||-+
T Consensus         2 ~~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~l-l~~~DVVIDf   80 (272)
T 4f3y_A            2 PGSMSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERV-CAEADYLIDF   80 (272)
T ss_dssp             ----CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHH-HHHCSEEEEC
T ss_pred             CCCccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHH-hcCCCEEEEc
Confidence            3456779999999 899999999999875 567765 788742 1  0    00 11266778899886 4789999999


Q ss_pred             cCchhHHHHhhcCCCCCCCCCc-EEEeCCCCChhHHHHHHhhC
Q 023897           75 TSILSLSEVLNSLPVHCLQRRT-LIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        75 vp~~~~~~v~~~l~~~~l~~~~-iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +++....+.+...    +..|. +|+-+++......+.+.+..
T Consensus        81 T~p~a~~~~~~~a----l~~G~~vVigTTG~s~~~~~~L~~aa  119 (272)
T 4f3y_A           81 TLPEGTLVHLDAA----LRHDVKLVIGTTGFSEPQKAQLRAAG  119 (272)
T ss_dssp             SCHHHHHHHHHHH----HHHTCEEEECCCCCCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHH----HHcCCCEEEECCCCCHHHHHHHHHHh
Confidence            9998887777765    22233 34433333333345555554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.16  E-value=6.5e-06  Score=73.44  Aligned_cols=80  Identities=23%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHC--------CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQ--------GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~--------g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iila   74 (275)
                      +|++.||||||+|.||..-+.++...        +.+|+ ++|++++.  +.+.+.|+ ..+++.++++. .+.|+|++|
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia  101 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT  101 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence            35567899999999999888776542        35655 68998853  46677787 57889998642 257999999


Q ss_pred             cCchhHHHHhhcC
Q 023897           75 TSILSLSEVLNSL   87 (275)
Q Consensus        75 vp~~~~~~v~~~l   87 (275)
                      +|+....++....
T Consensus       102 tP~~~H~~~a~~a  114 (393)
T 4fb5_A          102 TPNQFHAEMAIAA  114 (393)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            9998776666554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.16  E-value=7.1e-06  Score=74.01  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEec---------------------------ChH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS---------------------------DKR   61 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~---------------------------~~~   61 (275)
                      ...+|+|||+|.+|...++.++..|.+|+++|+++. .+.+.+.|.....                           ++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~  250 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFA  250 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHH
Confidence            357899999999999999999999999999999985 4555666765432                           244


Q ss_pred             HHhccCCCEEEEe--cCchh-----HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           62 AFLEADNDVILIS--TSILS-----LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        62 ~~~~~~aD~iila--vp~~~-----~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +. +..+|+||.+  +|...     ..+.++.     ++++.+++|++.
T Consensus       251 e~-~~~aDvVI~~~~~pg~~ap~li~~~~l~~-----mk~g~vIVdva~  293 (401)
T 1x13_A          251 AQ-AKEVDIIVTTALIPGKPAPKLITREMVDS-----MKAGSVIVDLAA  293 (401)
T ss_dssp             HH-HHHCSEEEECCCCTTSCCCCCBCHHHHHT-----SCTTCEEEETTG
T ss_pred             HH-hCCCCEEEECCccCCCCCCeeeCHHHHhc-----CCCCcEEEEEcC
Confidence            54 3689999999  54211     1333333     678899999874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.16  E-value=6.3e-06  Score=73.54  Aligned_cols=94  Identities=14%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-cCceE------ecChHHHhccCCCEEEEecCchh-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-SGISF------FSDKRAFLEADNDVILISTSILS-   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-~g~~~------~~~~~~~~~~~aD~iilavp~~~-   79 (275)
                      ...++|+|+|+|.+|..+++.++..|++|+++||+++ .+.+.+ .|...      ..++++. +.++|+||.|++... 
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~-~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKS-VQHADLLIGAVLVPGA  242 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHH-HHHCSEEEECCC----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHH-HhCCCEEEECCCCCcc
Confidence            3458999999999999999999999999999999985 333333 45432      1234454 478999999998643 


Q ss_pred             -HHHH-hhcC-CCCCCCCCcEEEeCCCCC
Q 023897           80 -LSEV-LNSL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        80 -~~~v-~~~l-~~~~l~~~~iv~d~~s~k  105 (275)
                       ...+ .++. +.  ++++.+++|+++..
T Consensus       243 ~~~~li~~~~l~~--mk~gg~iV~v~~~~  269 (369)
T 2eez_A          243 KAPKLVTRDMLSL--MKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ---CCSCHHHHTT--SCTTCEEEECC---
T ss_pred             ccchhHHHHHHHh--hcCCCEEEEEecCC
Confidence             1111 1222 33  67788999998643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.16  E-value=7.3e-07  Score=75.98  Aligned_cols=87  Identities=24%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHH------H
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS------E   82 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~------~   82 (275)
                      .+++.|||+|.+|++++..|.+.|.+|++++|+++.  +.+ +.++... +.+++  .++|+||-|||.....      +
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~~-~~~~l--~~~DiVInaTp~Gm~~~~~l~~~  193 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDCF-MEPPK--SAFDLIINATSASLHNELPLNKE  193 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEEE-SSCCS--SCCSEEEECCTTCCCCSCSSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEe-cHHHh--ccCCEEEEcccCCCCCCCCCChH
Confidence            578999999999999999999999999999999853  344 6666543 34452  4899999999975211      1


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .+.+  .  ++++.+++|+....
T Consensus       194 ~l~~--~--l~~~~~v~D~vY~P  212 (269)
T 3phh_A          194 VLKG--Y--FKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHH--H--HHHCSEEEESCCSS
T ss_pred             HHHh--h--CCCCCEEEEeCCCC
Confidence            1111  2  45678999987653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.15  E-value=1.5e-05  Score=69.97  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHH--H------cCceEecChHHHhccCCCEEEEe
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCH--R------SGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~--~------~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      +..+.+||+|||+|.+|.+++..|...+.  +|.++|++++..  .+.  .      ..+.+..+..++ +++||+||++
T Consensus         5 ~~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a-~~~aDvVii~   83 (326)
T 2zqz_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSD-AKDADLVVIT   83 (326)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGG-GGGCSEEEEC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHH-hCCCCEEEEc
Confidence            34566899999999999999999988876  899999987421  111  1      122343344454 4899999999


Q ss_pred             cCc
Q 023897           75 TSI   77 (275)
Q Consensus        75 vp~   77 (275)
                      .+.
T Consensus        84 ag~   86 (326)
T 2zqz_A           84 AGA   86 (326)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.14  E-value=5.4e-06  Score=73.08  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCC-hHHHHHHHHHHHC--CCeE-EEEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEecCchh
Q 023897            8 SSSTLKIGIIGFG-PFGQFLAKTMIKQ--GHIL-RATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILISTSILS   79 (275)
Q Consensus         8 ~~~~~~I~IIG~G-~mG~sla~~L~~~--g~~V-~~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iilavp~~~   79 (275)
                      ...++||||||+| .+|...+..|.+.  +.+| .++|++++.  ..+.+.|+ ..+++.++++. .+.|+|++|+|+..
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            3456799999999 8999999999886  4566 468999853  35566676 77899998642 25899999999988


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      ..+++...
T Consensus        95 H~~~~~~a  102 (340)
T 1zh8_A           95 NLPFIEKA  102 (340)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766655

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.14  E-value=3.5e-06  Score=76.22  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC---------CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEe
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ---------GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~---------g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iila   74 (275)
                      +.++||||||+|.||...+..+++.         +.+|+ ++|++++.  +.+.+.|+ ..+++.++++. .+.|+|++|
T Consensus        24 s~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~  103 (412)
T 4gqa_A           24 SARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDIT  103 (412)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEEC
T ss_pred             cccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEEC
Confidence            3457999999999999999988764         23555 58999853  45667787 57889998642 357999999


Q ss_pred             cCchhHHHHhhcC
Q 023897           75 TSILSLSEVLNSL   87 (275)
Q Consensus        75 vp~~~~~~v~~~l   87 (275)
                      +|+....++....
T Consensus       104 tp~~~H~~~~~~a  116 (412)
T 4gqa_A          104 SPNHLHYTMAMAA  116 (412)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9998776666554

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.13  E-value=1.1e-05  Score=70.86  Aligned_cols=91  Identities=14%  Similarity=0.178  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HH--HHcC--------ceEecChHHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LC--HRSG--------ISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a--~~~g--------~~~~~~~~~~~~~~aD~iil   73 (275)
                      ....+||+|||+|.||.++|..|..+|+  +|.++|++++..  .+  ....        +..+.+.++  +++||+||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~--~~~aDiVvi   93 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV--TANSKLVII   93 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG--GTTEEEEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH--hCCCCEEEE
Confidence            4566899999999999999999999987  899999987421  11  1111        123456654  389999999


Q ss_pred             ecCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           74 STSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        74 avp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      +...                ..+.++.+.+ .+   .++.+++.+++
T Consensus        94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~---~p~a~vlvvtN  137 (331)
T 4aj2_A           94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY---SPQCKLLIVSN  137 (331)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH---CTTCEEEECSS
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence            8643                1234555555 32   45666666654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.12  E-value=5.1e-06  Score=74.53  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             CCeEEEEcCC-hHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHHh
Q 023897           11 TLKIGIIGFG-PFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEVL   84 (275)
Q Consensus        11 ~~~I~IIG~G-~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v~   84 (275)
                      ++||||||+| .||..++..|.+. +++|+ ++|++++.  +.+.+.|+..+++.++++. .+.|+|++|+|+....+++
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~   81 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV   81 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence            5799999999 9999999999886 56665 68999853  4556678888899998642 2589999999998777766


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ...
T Consensus        82 ~~a   84 (387)
T 3moi_A           82 VQA   84 (387)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.12  E-value=5.1e-06  Score=74.58  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe---c-C-------------------------
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF---S-D-------------------------   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~---~-~-------------------------   59 (275)
                      ...+|+|+|+|.+|...++.++..|.+|+++|+++. .+.+.+.|....   . +                         
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  250 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  250 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHH
Confidence            467999999999999999999999999999999985 455556776543   1 0                         


Q ss_pred             hHHHhccCCCEEEEec--Cch----hH-HHHhhcCCCCCCCCCcEEEeCCC
Q 023897           60 KRAFLEADNDVILIST--SIL----SL-SEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        60 ~~~~~~~~aD~iilav--p~~----~~-~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.+. +..+|+||.|+  |..    .+ .+.+   ..  ++++.+++|++.
T Consensus       251 l~~~-~~~aDvVi~~~~~pg~~~~~li~~~~l---~~--mk~g~vivdva~  295 (384)
T 1l7d_A          251 VLKE-LVKTDIAITTALIPGKPAPVLITEEMV---TK--MKPGSVIIDLAV  295 (384)
T ss_dssp             HHHH-HTTCSEEEECCCCTTSCCCCCSCHHHH---TT--SCTTCEEEETTG
T ss_pred             HHHH-hCCCCEEEECCccCCCCCCeeeCHHHH---hc--CCCCCEEEEEec
Confidence            4454 47899999998  421    11 3333   33  678899999873

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.12  E-value=1.2e-05  Score=69.97  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-h-HHHH---------cC--ceEecChHHHhccCCCEEEEecCch
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-Q-LCHR---------SG--ISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~-~a~~---------~g--~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      ||+|||+|.||.+++..|...|+ +|.++|++++. + .+.+         ..  +..+++.++  +++||+||++.+..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a--~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYED--MRGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGG--GTTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHH--hCCCCEEEEeCCCC
Confidence            79999999999999999998887 69999998742 1 1111         13  234456643  48999999996653


Q ss_pred             h----------------HHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           79 S----------------LSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        79 ~----------------~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                +.++.+.+ .+   .++.+++.+++
T Consensus        79 ~k~G~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~iiv~tN  117 (308)
T 2d4a_B           79 RKPGMTREQLLEANANTMADLAEKIKAY---AKDAIVVITTN  117 (308)
T ss_dssp             CCSSCCTHHHHHHHHHHHHHHHHHHHHH---CTTCEEEECCS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEeCC
Confidence            2                56666666 43   35666655554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.09  E-value=5.7e-06  Score=73.16  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=57.1

Q ss_pred             CCeEEEEcCChHHH-HHHHHHHHC-CCeEE-EEcCChhhhHHHH---cCceEecChHHHhccC--CCEEEEecCchhHHH
Q 023897           11 TLKIGIIGFGPFGQ-FLAKTMIKQ-GHILR-ATSRTDHSQLCHR---SGISFFSDKRAFLEAD--NDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG~G~mG~-sla~~L~~~-g~~V~-~~dr~~~~~~a~~---~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~   82 (275)
                      ++||+|||+|.||. ..+..+.+. +++|+ ++|++.....+.+   .++..+++.++++ .+  .|+|++|+|+....+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~   80 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELL-TDPEIELITICTPAHTHYD   80 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHH-SCTTCCEEEECSCGGGHHH
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHh-cCCCCCEEEEeCCcHHHHH
Confidence            46999999999998 577777665 56765 6888832233333   5778889999964 54  899999999988777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        81 ~~~~a   85 (349)
T 3i23_A           81 LAKQA   85 (349)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.09  E-value=2.2e-06  Score=76.54  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=54.8

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchh
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      |++..+.||+|||+| +|...+.++++.  ++++. ++|++++  .+.+.+.|+..+++.+++ +++.|++++|||...
T Consensus         2 ~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l-~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A            2 PSASPKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQI-TGMPDIACIVVRSTV   78 (372)
T ss_dssp             -----CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGC-CSCCSEEEECCC--C
T ss_pred             CCCCCCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHH-hcCCCEEEEECCCcc
Confidence            456667899999999 899988888775  56766 5799885  356788899999999996 588999999999864

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.04  E-value=1e-05  Score=74.61  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcC----ChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCce---EecChHHHhc-cCCCEEEEec
Q 023897            9 SSTLKIGIIGF----GPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGIS---FFSDKRAFLE-ADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG~----G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~---~~~~~~~~~~-~~aD~iilav   75 (275)
                      |.++||||||+    |.||...+..|.+.  +++|+ ++|++++.  ..+.+.|+.   .+++.++++. .+.|+|++|+
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            45679999999    99999999999886  66765 78999853  355666764   7889998642 2689999999


Q ss_pred             CchhHHHHhhcC
Q 023897           76 SILSLSEVLNSL   87 (275)
Q Consensus        76 p~~~~~~v~~~l   87 (275)
                      |+....+++...
T Consensus       117 p~~~H~~~~~~a  128 (479)
T 2nvw_A          117 KVPEHYEVVKNI  128 (479)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            998776666554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.04  E-value=1.2e-05  Score=70.16  Aligned_cols=77  Identities=18%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEE-EEcCChhhh-HHHHc-CceEecChHHHh----------ccCCCEEEEecC
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILR-ATSRTDHSQ-LCHRS-GISFFSDKRAFL----------EADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~-~~dr~~~~~-~a~~~-g~~~~~~~~~~~----------~~~aD~iilavp   76 (275)
                      ++||||||+ |.||...+..+.+.+.+++ ++|++++.. .+... +...+++.++++          -.+.|+|++|+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            689999999 7999999999999887655 588887532 22222 567788888853          256899999999


Q ss_pred             chhHHHHhhcC
Q 023897           77 ILSLSEVLNSL   87 (275)
Q Consensus        77 ~~~~~~v~~~l   87 (275)
                      +....++....
T Consensus        83 ~~~H~~~~~~a   93 (318)
T 3oa2_A           83 NYLHYPHIAAG   93 (318)
T ss_dssp             GGGHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            98877776665

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.04  E-value=8.1e-06  Score=71.68  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCChHHH-HHHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHH
Q 023897            9 SSTLKIGIIGFGPFGQ-FLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEV   83 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~-sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v   83 (275)
                      |+++||||||+|.||. ..+..|.+. +.+|+ ++|++++.     .|+..+++.++++..  +.|+|++|+|+....++
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-----~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~   97 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-----EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEA   97 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-----TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-----cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence            4557999999999998 788888876 56765 57888642     477888899986532  58999999999887777


Q ss_pred             hhcC
Q 023897           84 LNSL   87 (275)
Q Consensus        84 ~~~l   87 (275)
                      +...
T Consensus        98 ~~~a  101 (330)
T 4ew6_A           98 AYKA  101 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.04  E-value=5.6e-06  Score=73.05  Aligned_cols=76  Identities=20%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             CCeEEEEcCChHHHH-HHH-HHHH-CCCeEE-EEcCChhh-hH-HHHcCceEecChHHHhccC--CCEEEEecCchhHHH
Q 023897           11 TLKIGIIGFGPFGQF-LAK-TMIK-QGHILR-ATSRTDHS-QL-CHRSGISFFSDKRAFLEAD--NDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG~G~mG~s-la~-~L~~-~g~~V~-~~dr~~~~-~~-a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~   82 (275)
                      ++||||||+|.||.. .+. .+.. .+++|. ++|++++. +. +...++..+++.++++ ++  .|+|++|+|+....+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVL-NDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHH-TCTTEEEEEECSCGGGHHH
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHh-cCCCCCEEEEcCChHHHHH
Confidence            479999999999986 455 3333 367776 78998743 22 2334778889999964 54  799999999988777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        81 ~~~~a   85 (345)
T 3f4l_A           81 YAKRA   85 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.03  E-value=1.8e-05  Score=68.20  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~~   86 (275)
                      +.+||+|+|+ |.||...++.+.+.|+++ ++..++........|+.++.+++++ .+  ..|+++++||+....+++.+
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g~~~~G~~vy~sl~el-~~~~~~D~viI~tP~~~~~~~~~e   83 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGGTTHLGLPVFNTVREA-VAATGATASVIYVPAPFCKDSILE   83 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCEETTEEEESSHHHH-HHHHCCCEEEECCCGGGHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCcccceeCCeeccCCHHHH-hhcCCCCEEEEecCHHHHHHHHHH
Confidence            4579999998 999999999999889884 3344442110123578888899885 45  79999999999999988888


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        84 a   84 (288)
T 2nu8_A           84 A   84 (288)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.01  E-value=4e-06  Score=69.04  Aligned_cols=76  Identities=12%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             CCeEEEEcCChHHHHHHHH--HHHCCCeEE-EEcCChhhhH--HHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKT--MIKQGHILR-ATSRTDHSQL--CHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~--L~~~g~~V~-~~dr~~~~~~--a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .++|+|||+|.+|..+++.  +...|+++. ++|++++...  ....++...+++++. +++.|++++|+|.....++.+
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~el-i~~~D~ViIAvPs~~~~ei~~  163 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQH-VKDESVAILTVPAVAAQSITD  163 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHH-CSSCCEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHH-HHhCCEEEEecCchhHHHHHH
Confidence            4689999999999999994  445577766 5788885321  222223345677775 345599999999987777776


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      .+
T Consensus       164 ~l  165 (215)
T 2vt3_A          164 RL  165 (215)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.01  E-value=1.3e-05  Score=72.43  Aligned_cols=69  Identities=20%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceEe--cChHHHhccCCCEEEEecCch
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISFF--SDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~   78 (275)
                      ...++|+|||+|.||..+++.|+..|. +|++++|+++.  ..+.+.|....  .++.+. +.++|+||.|+|..
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~-l~~aDvVi~at~~~  238 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH-LARSDVVVSATAAP  238 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHH-HHTCSEEEECCSSS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHH-hcCCCEEEEccCCC
Confidence            456799999999999999999999998 99999999853  45666676532  355664 47899999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.01  E-value=4e-06  Score=71.96  Aligned_cols=95  Identities=22%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC----ceEecChHHHhccCCCEEEEecCchhH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG----ISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g----~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ....+++.|+|+|.+|.+++..|.+.|. +|++++|+++.  +.+.+.+    +.. .+++++ ..++|+||-|||....
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l-~~~aDiIInaTp~gm~  200 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQL-KQSYDVIINSTSASLD  200 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGC-CSCEEEEEECSCCCC-
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHh-cCCCCEEEEcCcCCCC
Confidence            3456799999999999999999999996 99999999853  2333322    222 244553 3689999999998753


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .+. ..++...++++.+++|+....
T Consensus       201 ~~~-~~l~~~~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          201 GEL-PAIDPVIFSSRSVCYDMMYGK  224 (281)
T ss_dssp             ----CSCCGGGEEEEEEEEESCCCS
T ss_pred             CCC-CCCCHHHhCcCCEEEEecCCC
Confidence            322 112211267788999987543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.00  E-value=1.7e-05  Score=69.07  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEE-EEcCChhhh-HHHHc-CceEecChHHHh---------ccCCCEEEEecCc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILR-ATSRTDHSQ-LCHRS-GISFFSDKRAFL---------EADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~-~~dr~~~~~-~a~~~-g~~~~~~~~~~~---------~~~aD~iilavp~   77 (275)
                      ++||||||+ |.||...+..+.+.+.+++ ++|++++.. .+... +...+++.++++         -.+.|+|++|+|+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            689999999 7899999999999887755 688887543 22222 567788888753         1578999999999


Q ss_pred             hhHHHHhhcC
Q 023897           78 LSLSEVLNSL   87 (275)
Q Consensus        78 ~~~~~v~~~l   87 (275)
                      ....+++...
T Consensus        83 ~~H~~~~~~a   92 (312)
T 3o9z_A           83 HLHYPQIRMA   92 (312)
T ss_dssp             GGHHHHHHHH
T ss_pred             hhhHHHHHHH
Confidence            8877776665

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.00  E-value=7.2e-06  Score=73.09  Aligned_cols=80  Identities=21%  Similarity=0.243  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCC--------CeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQG--------HILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g--------~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iila   74 (275)
                      .|++.||||||+|.||...+..+.+..        .+|. ++|++++.  ..+.+.|+ ..+++.++++. .+.|+|++|
T Consensus         3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~   82 (390)
T 4h3v_A            3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVC   82 (390)
T ss_dssp             -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEEC
T ss_pred             CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEe
Confidence            345568999999999999888887642        2554 68999853  45667787 57889998642 247999999


Q ss_pred             cCchhHHHHhhcC
Q 023897           75 TSILSLSEVLNSL   87 (275)
Q Consensus        75 vp~~~~~~v~~~l   87 (275)
                      +|+....++....
T Consensus        83 tP~~~H~~~~~~a   95 (390)
T 4h3v_A           83 TPGDSHAEIAIAA   95 (390)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            9998877766654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.00  E-value=1.6e-05  Score=72.62  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh-h-HHH---HcC---ceEec----ChHHHhcc--CCCEEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS-Q-LCH---RSG---ISFFS----DKRAFLEA--DNDVIL   72 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~-~-~a~---~~g---~~~~~----~~~~~~~~--~aD~ii   72 (275)
                      +.++||+|||+|.||...+..|.+. +++|. ++|++++. + .+.   +.|   ...++    +.++++ +  +.|+|+
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll-~~~~vD~V~   96 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNML-KDKNIDAVF   96 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHT-TCTTCCEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHh-cCCCCCEEE
Confidence            4567999999999999999999875 66765 78999853 2 222   345   46677    888864 4  589999


Q ss_pred             EecCchhHHHHhhcC
Q 023897           73 ISTSILSLSEVLNSL   87 (275)
Q Consensus        73 lavp~~~~~~v~~~l   87 (275)
                      +|+|+....+++...
T Consensus        97 i~tp~~~h~~~~~~a  111 (444)
T 2ixa_A           97 VSSPWEWHHEHGVAA  111 (444)
T ss_dssp             ECCCGGGHHHHHHHH
T ss_pred             EcCCcHHHHHHHHHH
Confidence            999998877766654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.98  E-value=6e-05  Score=66.42  Aligned_cols=69  Identities=23%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CCCCCCeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhh--HH--HH------cCceEecChHHHhccCCCEEEE
Q 023897            7 SSSSTLKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LC--HR------SGISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         7 ~~~~~~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a--~~------~g~~~~~~~~~~~~~~aD~iil   73 (275)
                      ..+.++||+|||+ |.+|+++|..+...|.  +|.++|++++..  .+  ..      ..+..+++..++ +++||+||+
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~a-l~dADvVvi   82 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEA-LTDAKYIVS   82 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHH-HTTEEEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHH-hCCCCEEEE
Confidence            3566789999997 9999999999999884  899999987421  11  11      134556777665 489999999


Q ss_pred             ecC
Q 023897           74 STS   76 (275)
Q Consensus        74 avp   76 (275)
                      +..
T Consensus        83 taG   85 (343)
T 3fi9_A           83 SGG   85 (343)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            963

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.98  E-value=1.8e-05  Score=67.83  Aligned_cols=80  Identities=15%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHC-CCeEEE-EcCChh-h--h-HH-----HHcCceEecChHHHhccCCCEEEEe
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQ-GHILRA-TSRTDH-S--Q-LC-----HRSGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~-~dr~~~-~--~-~a-----~~~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      .++.++||+|+| +|+||+.+++.+.+. ++++.+ +|+++. .  . ..     ...|+.++++++++ +.++|++|-+
T Consensus        17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~l-l~~aDVvIDF   95 (288)
T 3ijp_A           17 QGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESA-FSNTEGILDF   95 (288)
T ss_dssp             ----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHH-TTSCSEEEEC
T ss_pred             hccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHH-hcCCCEEEEc
Confidence            345667999999 899999999998765 677664 688642 1  1 11     13467788899996 4799999999


Q ss_pred             cCchhHHHHhhcC
Q 023897           75 TSILSLSEVLNSL   87 (275)
Q Consensus        75 vp~~~~~~v~~~l   87 (275)
                      +++....+.+...
T Consensus        96 T~p~a~~~~~~~~  108 (288)
T 3ijp_A           96 SQPQASVLYANYA  108 (288)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9988877766665

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.96  E-value=1.2e-05  Score=72.83  Aligned_cols=71  Identities=17%  Similarity=0.310  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cCh---HHHhccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDK---RAFLEADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~---~~~~~~~aD~iilavp~~~~   80 (275)
                      ..++|.|+|+|++|..+++.|.+.|++|+++|++++ ...+.+.|..+.    ++.   .++-+.++|+||++++.+..
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            457899999999999999999999999999999995 455666676321    122   22213789999999998754

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.96  E-value=4.6e-05  Score=66.31  Aligned_cols=65  Identities=14%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh-h-HHHH--c------CceEecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS-Q-LCHR--S------GISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~-~-~a~~--~------g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+|||+|.+|.+++..|...+  .+|.++|++++. + .+.+  .      .+.+..+..++ +++||+||++.+.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a-~~~aD~Vii~ag~   77 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGD-LEGARAVVLAAGV   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGG-GTTEEEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHH-hCCCCEEEECCCC
Confidence            69999999999999999999887  489999999742 1 1211  1      22333233444 4899999998764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.94  E-value=2.6e-05  Score=68.40  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCC--CeEEEEcCChhhhHH--HHc-C----ceE---ecChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQG--HILRATSRTDHSQLC--HRS-G----ISF---FSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a--~~~-g----~~~---~~~~~~~~~~~aD~iilav   75 (275)
                      ..+|||+|+| +|.+|.+++..|...|  ++|.++|+++....+  ... .    +..   +++..++ ++++|+||++.
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~a-l~gaDvVi~~a   84 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAA-LTGMDLIIVPA   84 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHH-HTTCSEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHH-cCCCCEEEEcC
Confidence            3457999999 7999999999999988  789999988652111  111 1    122   2355565 48999999997


Q ss_pred             Cc
Q 023897           76 SI   77 (275)
Q Consensus        76 p~   77 (275)
                      +.
T Consensus        85 g~   86 (326)
T 1smk_A           85 GV   86 (326)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.94  E-value=8.5e-06  Score=69.60  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHc----CceEecChHHHhcc-CCCEEEEecCchhH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRS----GISFFSDKRAFLEA-DNDVILISTSILSL   80 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~----g~~~~~~~~~~~~~-~aD~iilavp~~~~   80 (275)
                      ....+++.|+|+|.+|.+++..|.+.|.+|++++|+++.  +.+.+.    .+.. .++++ +.+ ++|+||.|+|....
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~-~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDS-IPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGG-CCCSCCSEEEECCCC---
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHH-hccCCCCEEEECCCCCCC
Confidence            345679999999999999999999999999999999742  233222    1222 23444 223 79999999998754


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .++ ..++...++++.+++|+....
T Consensus       194 ~~~-~~i~~~~l~~~~~v~D~~y~p  217 (272)
T 1p77_A          194 GGT-ASVDAEILKLGSAFYDMQYAK  217 (272)
T ss_dssp             -----CCCHHHHHHCSCEEESCCCT
T ss_pred             CCC-CCCCHHHcCCCCEEEEeeCCC
Confidence            332 122111145677899987643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.93  E-value=5.1e-05  Score=64.76  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC---ceEecChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG---ISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g---~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ....+++.|+|+|.+|.+++..|.+.|. +|++++|+++.  +.+.+.+   +.. .+.+++...++|+||-|||.....
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCC
Confidence            4466899999999999999999999996 99999999853  3334333   232 233442115799999999986432


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +. ..++...++++.+++|+...
T Consensus       196 ~~-~~i~~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          196 DL-PPLPADVLGEAALAYELAYG  217 (272)
T ss_dssp             CC-CCCCGGGGTTCSEEEESSCS
T ss_pred             CC-CCCCHHHhCcCCEEEEeecC
Confidence            11 11221226788999998754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.92  E-value=4.3e-05  Score=65.17  Aligned_cols=95  Identities=19%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCc---eEecChHHHhc-cCCCEEEEecCchhHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGI---SFFSDKRAFLE-ADNDVILISTSILSLSE   82 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~---~~~~~~~~~~~-~~aD~iilavp~~~~~~   82 (275)
                      ...+++.|+|+|.+|.+++..|.+.|.+|++++|+++.  ..+.+.+.   ....+.++ +. ..+|+||.|+|.....+
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~-~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-LEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-GTTCCCSEEEECCSCGGGTC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHH-hccCCCCEEEECCCCCCCCC
Confidence            45678999999999999999999999999999999742  23333221   11233444 22 37999999999765322


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      + ..++...++++.+++|+....
T Consensus       196 ~-~~i~~~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          196 I-PAIPSSLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             C-CCCCGGGCCTTCEEEESCCCS
T ss_pred             C-CCCCHHHcCCCCEEEEeccCC
Confidence            1 123211257788999987653

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.90  E-value=1.6e-05  Score=69.21  Aligned_cols=89  Identities=21%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-C-CCeEE-EEcCChhh---hHHHHcCceE-ecChHHHhc----cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-Q-GHILR-ATSRTDHS---QLCHRSGISF-FSDKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~-g~~V~-~~dr~~~~---~~a~~~g~~~-~~~~~~~~~----~~aD~iilavp~~   78 (275)
                      +++||+|||+|.+|..++..+.+ . +.++. ++|++++.   ..+.+.|+.. ..+.++++.    .+.|+||+|+|..
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence            45799999999999999999965 3 45544 67888643   4556777753 345566421    3479999999987


Q ss_pred             hHHHHhhcCCCCCCCC--CcEEEeCC
Q 023897           79 SLSEVLNSLPVHCLQR--RTLIADVL  102 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~--~~iv~d~~  102 (275)
                      ...+.....    +..  |..+++..
T Consensus        83 ~h~~~a~~a----l~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           83 AHVQNEALL----RQAKPGIRLIDLT  104 (312)
T ss_dssp             HHHHHHHHH----HHHCTTCEEEECS
T ss_pred             HHHHHHHHH----HHhCCCCEEEEcC
Confidence            766666655    333  67777644

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.90  E-value=3.9e-05  Score=66.06  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~~   86 (275)
                      +.+||+|+|+ |+||..+++.+.+.|+++ ++..++........|+.++.+++++ .+  ..|++++++|+....+++++
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g~~i~G~~vy~sl~el-~~~~~~Dv~Ii~vp~~~~~~~~~e   83 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGMEVLGVPVYDTVKEA-VAHHEVDASIIFVPAPAAADAALE   83 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCEETTEEEESSHHHH-HHHSCCSEEEECCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCCceECCEEeeCCHHHH-hhcCCCCEEEEecCHHHHHHHHHH
Confidence            4578999997 999999999999989984 3444442210113578888899885 46  89999999999999999888


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        84 a   84 (288)
T 1oi7_A           84 A   84 (288)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.89  E-value=1.8e-05  Score=72.49  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHHcC-ceE----ec---ChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHRSG-ISF----FS---DKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~~g-~~~----~~---~~~~~~~~~aD~iilavp~~~   79 (275)
                      .+++|.|+|+|.+|+.++..|.+.|++|++++|+++. + .+...+ +..    ..   +..++ +.++|+||.|+|...
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~-l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE-VAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHH-HTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHH-HcCCcEEEECCcccc
Confidence            4578999999999999999999999999999999753 2 222222 211    12   23343 478999999999864


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ...+....    +.++..++|.+
T Consensus        81 ~~~i~~a~----l~~g~~vvd~~   99 (450)
T 1ff9_A           81 HATVIKSA----IRQKKHVVTTS   99 (450)
T ss_dssp             HHHHHHHH----HHHTCEEEESS
T ss_pred             chHHHHHH----HhCCCeEEEee
Confidence            44433322    33345555554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.88  E-value=2.5e-05  Score=71.83  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHC-CCeEEEEcCChhh--hHHHHcCceE----ec---ChHHHhccCCCEEEEecCc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQ-GHILRATSRTDHS--QLCHRSGISF----FS---DKRAFLEADNDVILISTSI   77 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~dr~~~~--~~a~~~g~~~----~~---~~~~~~~~~aD~iilavp~   77 (275)
                      ...+++|.|+|+|.+|++++..|.+. |++|++++|+++.  ..+...++..    ..   ++.++ +.++|+||.|+|.
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~-l~~~DvVIn~tp~   98 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKV-LADNDVVISLIPY   98 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHH-HHTSSEEEECSCG
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHH-HcCCCEEEECCch
Confidence            44567899999999999999999998 7899999999853  2222234421    11   23343 3789999999998


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .....+....    +..+..++|.+.
T Consensus        99 ~~~~~v~~a~----l~~g~~vvd~~~  120 (467)
T 2axq_A           99 TFHPNVVKSA----IRTKTDVVTSSY  120 (467)
T ss_dssp             GGHHHHHHHH----HHHTCEEEECSC
T ss_pred             hhhHHHHHHH----HhcCCEEEEeec
Confidence            7544444332    344567777654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.87  E-value=1.9e-05  Score=65.62  Aligned_cols=91  Identities=9%  Similarity=0.023  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cChH---HHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDKR---AFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~---~~~~~~aD~iilavp~~~~~   81 (275)
                      ..++|.|+|+|.+|..+++.|.+.|+ |++++++++ ..... .|+.+.    ++.+   ++-+.++|.||++++.+...
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            45789999999999999999999999 999999985 33333 565321    2222   22147899999999987543


Q ss_pred             HHhhcC-CCCCCCCC-cEEEeCCCC
Q 023897           82 EVLNSL-PVHCLQRR-TLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~-~iv~d~~s~  104 (275)
                      ..+... ..  +.++ .+++.+.+.
T Consensus        86 ~~~~~~a~~--~~~~~~iia~~~~~  108 (234)
T 2aef_A           86 IHCILGIRK--IDESVRIIAEAERY  108 (234)
T ss_dssp             HHHHHHHHH--HCSSSEEEEECSSG
T ss_pred             HHHHHHHHH--HCCCCeEEEEECCH
Confidence            332222 22  3444 677766543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.87  E-value=5.2e-05  Score=65.09  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc-----C--ceEec--ChHHHhccCCCEEEEec
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS-----G--ISFFS--DKRAFLEADNDVILIST   75 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~-----g--~~~~~--~~~~~~~~~aD~iilav   75 (275)
                      ....+++.|+|+|.+|.+++..|.+.|. +|++++|+++.  +.+.+.     +  +...+  ++.+. +.++|+||-||
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~-l~~~DiVInaT  202 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDV-IAAADGVVNAT  202 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHH-HHHSSEEEECS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHH-HhcCCEEEECC
Confidence            3456789999999999999999999998 79999999853  222221     1  22333  56664 47899999999


Q ss_pred             CchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           76 SILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        76 p~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |......--..++...++++.++.|+.-.
T Consensus       203 p~Gm~~~~~~pi~~~~l~~~~~v~DlvY~  231 (283)
T 3jyo_A          203 PMGMPAHPGTAFDVSCLTKDHWVGDVVYM  231 (283)
T ss_dssp             STTSTTSCSCSSCGGGCCTTCEEEECCCS
T ss_pred             CCCCCCCCCCCCCHHHhCCCCEEEEecCC
Confidence            96532210001211126788899998754

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.87  E-value=1.3e-05  Score=69.29  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHH----CCCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIK----QGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~----~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~   81 (275)
                      .++++||+|||+|.||...+..+..    .+.+++ ++|++..   +.+.|+. ..+.++++. .+.|+|++|+|+....
T Consensus         4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~   79 (294)
T 1lc0_A            4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVR-QISLEDALRSQEIDVAYICSESSSHE   79 (294)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH
T ss_pred             CCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH
Confidence            4556899999999999999998875    355655 5777642   2234555 368888642 2679999999998777


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      ++....
T Consensus        80 ~~~~~a   85 (294)
T 1lc0_A           80 DYIRQF   85 (294)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666655

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.85  E-value=9.2e-05  Score=64.50  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHH--cC-----ceE---ecChHHHhccCCCEEEEecCc-
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQG--HILRATSRTDHSQLCHR--SG-----ISF---FSDKRAFLEADNDVILISTSI-   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~--~g-----~~~---~~~~~~~~~~~aD~iilavp~-   77 (275)
                      |||+|||+ |.+|.+++..|...|  .+|.++|+++....+.+  ..     +..   +++.+++ ++++|+||++... 
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a-~~~aDvVvi~ag~~   79 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDC-LKGCDVVVIPAGVP   79 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHH-HTTCSEEEECCSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHH-hCCCCEEEECCCcC
Confidence            69999998 999999999999988  68999999872212111  11     222   2467765 4899999999743 


Q ss_pred             ---------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 ---------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ---------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                     ..+.++.+.+ .+   .++.+++.+++
T Consensus        80 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~---~p~a~viv~sN  118 (314)
T 1mld_A           80 RKPGMTRDDLFNTNATIVATLTAACAQH---CPDAMICIISN  118 (314)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHH---CTTSEEEECSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEECC
Confidence                           2345566666 43   35556655543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.84  E-value=4.3e-05  Score=67.90  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc---e-Ee---cChHHHhccCCCEEEEecCchh--
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI---S-FF---SDKRAFLEADNDVILISTSILS--   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~---~-~~---~~~~~~~~~~aD~iilavp~~~--   79 (275)
                      ...+|.|+|+|.+|...+..++..|.+|+++||+++ .+.+.+.+.   . ..   .+..+. +.++|+||-|++...  
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETA-VAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHH-HHTCSEEEECCCCTTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHH-HcCCCEEEECCCcCCCC
Confidence            347999999999999999999999999999999985 333333321   1 11   123343 368999999997543  


Q ss_pred             -----HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           80 -----LSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        80 -----~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                           ..+.+   ..  ++++.+++|++..
T Consensus       245 ~~~li~~~~~---~~--~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILVPASLV---EQ--MRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCBCHHHH---TT--SCTTCEEEETTCT
T ss_pred             CCeecCHHHH---hh--CCCCCEEEEEecC
Confidence                 22222   23  6778899998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.83  E-value=5.9e-05  Score=66.99  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-hHHHHcCceEecChHHHhccCCCEEEEecC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-QLCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +...++|+|+|+|+||..+|+.|.+.|.+|+++|+++. . +.+.+.|.... +.++++..+||+++.|..
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~  239 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL  239 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccch
Confidence            45678999999999999999999999999999999985 3 34455576554 344433248999988753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.82  E-value=7.7e-05  Score=68.35  Aligned_cols=90  Identities=10%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-H-HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-L-SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~-~~v~   84 (275)
                      ....++++|+|+|.||.++|+.|+..|.+|+++|+++. ...+...|..+ .+.+++ ...+|+++.++.... + .+.+
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~-~~~aDvVi~atG~~~vl~~e~l  339 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDV-VSEADIFVTTTGNKDIIMLDHM  339 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGT-TTTCSEEEECSSCSCSBCHHHH
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHH-HHhcCEEEeCCCChhhhhHHHH
Confidence            34678999999999999999999999999999999985 34555667654 466664 578999999876432 1 1222


Q ss_pred             hcCCCCCCCCCcEEEeCCCC
Q 023897           85 NSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~  104 (275)
                         ..  ++++.++++++..
T Consensus       340 ---~~--mk~gaiVvNaG~~  354 (488)
T 3ond_A          340 ---KK--MKNNAIVCNIGHF  354 (488)
T ss_dssp             ---TT--SCTTEEEEESSST
T ss_pred             ---Hh--cCCCeEEEEcCCC
Confidence               33  6788999998753

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.80  E-value=3.2e-05  Score=66.04  Aligned_cols=78  Identities=23%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHH-CCCeEE-EEcCChhh----hHH-----HHcCceEecChHHHhccCCCEEEEecC
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIK-QGHILR-ATSRTDHS----QLC-----HRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~dr~~~~----~~a-----~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +++|||+|+|+ |.||+.+++.+.+ .|++++ ++|+++..    ...     ...++..+++++++ +.++|+||-+++
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~-l~~~DvVIDft~   81 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAV-KDDFDVFIDFTR   81 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTT-TTSCSEEEECSC
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHH-hcCCCEEEEcCC
Confidence            45689999998 9999999998875 477877 67877531    111     12245567778775 478999997777


Q ss_pred             chhHHHHhhcC
Q 023897           77 ILSLSEVLNSL   87 (275)
Q Consensus        77 ~~~~~~v~~~l   87 (275)
                      +....+.+...
T Consensus        82 p~~~~~~~~~a   92 (273)
T 1dih_A           82 PEGTLNHLAFC   92 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            77766666665

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.77  E-value=2.8e-05  Score=69.53  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             CCCCeEEEEc-CChHHHH-HH----HHHHHCC-CeE----------EEEcCChhh--hHHHHcCc-eEecChHHHhc-cC
Q 023897            9 SSTLKIGIIG-FGPFGQF-LA----KTMIKQG-HIL----------RATSRTDHS--QLCHRSGI-SFFSDKRAFLE-AD   67 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~s-la----~~L~~~g-~~V----------~~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~   67 (275)
                      ++++||+||| +|.||.. .+    ..+.+.+ ..+          .++|++++.  ..+.+.|+ ..+++.++++. .+
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~   83 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN   83 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence            4567999999 9999998 77    7777654 222          489999853  45667888 47889999642 24


Q ss_pred             CCEEEEecCchhHHHHhhcC
Q 023897           68 NDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        68 aD~iilavp~~~~~~v~~~l   87 (275)
                      .|+|++|+|+....+++...
T Consensus        84 iD~V~i~tp~~~h~~~~~~a  103 (383)
T 3oqb_A           84 DTMFFDAATTQARPGLLTQA  103 (383)
T ss_dssp             CCEEEECSCSSSSHHHHHHH
T ss_pred             CCEEEECCCchHHHHHHHHH
Confidence            79999999997766665554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.75  E-value=9.4e-05  Score=63.50  Aligned_cols=78  Identities=6%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......++.|||.|. +|..+|..|...|..|++++++.             .++.+. +.+||+||.|++...+   +.
T Consensus       161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~-~~~ADIVI~Avg~p~~---I~  223 (301)
T 1a4i_A          161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT-------------AHLDEE-VNKGDILVVATGQPEM---VK  223 (301)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHH-HTTCSEEEECCCCTTC---BC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc-------------ccHHHH-hccCCEEEECCCCccc---CC
Confidence            455678999999996 79999999999999999997552             456664 4899999999997542   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       224 ~-~~--vk~GavVIDVgi~  239 (301)
T 1a4i_A          224 G-EW--IKPGAIVIDCGIN  239 (301)
T ss_dssp             G-GG--SCTTCEEEECCCB
T ss_pred             H-HH--cCCCcEEEEccCC
Confidence            1 23  7899999999864

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.73  E-value=7.8e-05  Score=65.67  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=56.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEE-EEcCChhh--hHHHHcCceEec-----------------ChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILR-ATSRTDHS--QLCHRSGISFFS-----------------DKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~-~~dr~~~~--~~a~~~g~~~~~-----------------~~~~~~~~~aD~   70 (275)
                      +||||+|+|+||+.+++.|.+.. .+|. +.|+++..  ..+.+.|+....                 +.++. ..++|+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l-~~~vDv   80 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDL-IKTSDI   80 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHH-HHHCSE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHh-hcCCCE
Confidence            58999999999999999998763 4665 46776532  334444554332                 22332 247899


Q ss_pred             EEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        71 iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ||.|+|.....+.....    +..|..++|.++
T Consensus        81 V~~aTp~~~s~~~a~~~----~~aG~kvV~~sa  109 (340)
T 1b7g_O           81 VVDTTPNGVGAQYKPIY----LQLQRNAIFQGG  109 (340)
T ss_dssp             EEECCSTTHHHHHHHHH----HHTTCEEEECTT
T ss_pred             EEECCCCchhHHHHHHH----HHcCCeEEEeCC
Confidence            99999998766666543    233445555544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.73  E-value=3e-05  Score=71.22  Aligned_cols=70  Identities=19%  Similarity=0.261  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh-HHHHcCceE-e---cC---hHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ-LCHRSGISF-F---SD---KRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~a~~~g~~~-~---~~---~~~~~~~~aD~iilavp~~~   79 (275)
                      ..|||-|+|+|.+|..+|+.|.+.||+|++.|++++ .+ ...+.++.. .   ++   ++++-+++||+++.+++.+.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            468999999999999999999999999999999985 33 334556532 1   12   33333478999998888864

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.72  E-value=0.00011  Score=62.62  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......++.|||.|. +|..+|..|...|..|++++++.             .++++. +.+||+||.+++...+   +.
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------~~L~~~-~~~ADIVI~Avg~p~~---I~  218 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLY-TRQADLIIVAAGCVNL---LR  218 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHH-HTTCSEEEECSSCTTC---BC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHH-hhcCCEEEECCCCCCc---CC
Confidence            456778999999877 79999999999999999998652             355665 4899999999995422   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       219 ~-~~--vk~GavVIDVgi~  234 (285)
T 3p2o_A          219 S-DM--VKEGVIVVDVGIN  234 (285)
T ss_dssp             G-GG--SCTTEEEEECCCE
T ss_pred             H-HH--cCCCeEEEEeccC
Confidence            1 23  7899999999853

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.71  E-value=0.00012  Score=63.09  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=59.6

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhhc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~~   86 (275)
                      ...++.|+|+ |+||..+++.+.+.|++ .+++.++......-.|+.++.+++++ .+  ..|++++++|+....+++++
T Consensus        12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i~G~~vy~sl~el-~~~~~~Dv~ii~vp~~~~~~~v~e   89 (294)
T 2yv1_A           12 ENTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEA-VKETDANASVIFVPAPFAKDAVFE   89 (294)
T ss_dssp             TTCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEETTEEEESSHHHH-HHHHCCCEEEECCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceECCEeeeCCHHHH-hhcCCCCEEEEccCHHHHHHHHHH
Confidence            4567899997 99999999999999998 45555553210112588888999885 46  89999999999999998888


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        90 a   90 (294)
T 2yv1_A           90 A   90 (294)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.71  E-value=8e-05  Score=65.98  Aligned_cols=89  Identities=17%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEcCC--hh-hhHHHHc-------------CceEe-cChHHHhcc-CCCE
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQG-HILRATSRT--DH-SQLCHRS-------------GISFF-SDKRAFLEA-DNDV   70 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~dr~--~~-~~~a~~~-------------g~~~~-~~~~~~~~~-~aD~   70 (275)
                      ++||+|+| +|.+|+.+.+.|.+.. ++|....++  .. .......             .+.+. .+++++ .+ ++|+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv   86 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHE-EFEDVDI   86 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSG-GGTTCCE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHH-hcCCCCE
Confidence            46999999 8999999999998764 577665422  21 1111111             11111 244443 35 8999


Q ss_pred             EEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        71 iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ||+|+|.....+....+    +..|..++|.++.
T Consensus        87 V~~atp~~~~~~~a~~~----~~aG~~VId~s~~  116 (354)
T 1ys4_A           87 VFSALPSDLAKKFEPEF----AKEGKLIFSNASA  116 (354)
T ss_dssp             EEECCCHHHHHHHHHHH----HHTTCEEEECCST
T ss_pred             EEECCCchHHHHHHHHH----HHCCCEEEECCch
Confidence            99999998877777776    4457789998764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.70  E-value=5.1e-05  Score=65.96  Aligned_cols=91  Identities=10%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             CCCCCeEEEEcCChH-HHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCc---eE-----e--cChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPF-GQFLAKTMIKQGHILRATSRTDHS--QLCHRSGI---SF-----F--SDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~m-G~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~---~~-----~--~~~~~~~~~~aD~iila   74 (275)
                      .....++.|||.|.| |..+|+.|...|.+|++++|+...  ..+...+.   ..     +  .++.+. +.+||+||.|
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~-l~~ADIVIsA  252 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKC-SLDSDVVITG  252 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHH-HHHCSEEEEC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHH-hccCCEEEEC
Confidence            557789999999976 999999999999999999998531  22222211   11     2  456675 4899999999


Q ss_pred             cCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           75 TSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        75 vp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |+....  ++.. ..  +++|.+++|++.-
T Consensus       253 tg~p~~--vI~~-e~--vk~GavVIDVgi~  277 (320)
T 1edz_A          253 VPSENY--KFPT-EY--IKEGAVCINFACT  277 (320)
T ss_dssp             CCCTTC--CBCT-TT--SCTTEEEEECSSS
T ss_pred             CCCCcc--eeCH-HH--cCCCeEEEEcCCC
Confidence            997421  0111 23  7889999999863

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.69  E-value=2.1e-05  Score=64.55  Aligned_cols=78  Identities=14%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CCCeEE-EEcCChhhhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QGHILR-ATSRTDHSQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g~~V~-~~dr~~~~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ..++|+|||+|.+|..+++.+.. .|+++. ++|.+++.....-.|+  ...+++++.+.++.|.+++|+|.....++..
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~  158 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAAD  158 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhHHHHHH
Confidence            34689999999999999986322 277766 4788875321111233  3356777753235899999999987666666


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      .+
T Consensus       159 ~l  160 (211)
T 2dt5_A          159 LL  160 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.68  E-value=0.00013  Score=62.18  Aligned_cols=78  Identities=9%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......++.|||.|. +|..+|..|...|..|+++.+..             .++++. +.+||+||.+++...+   +.
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~-~~~ADIVI~Avg~p~~---I~  219 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSH-TTKADILIVAVGKPNF---IT  219 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHH-HTTCSEEEECCCCTTC---BC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHh-cccCCEEEECCCCCCC---CC
Confidence            456778999999887 79999999999999999997652             355664 4899999999985422   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       220 ~-~~--vk~GavVIDvgi~  235 (285)
T 3l07_A          220 A-DM--VKEGAVVIDVGIN  235 (285)
T ss_dssp             G-GG--SCTTCEEEECCCE
T ss_pred             H-HH--cCCCcEEEEeccc
Confidence            1 23  7899999999854

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.68  E-value=6e-05  Score=66.23  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHC-CCeEEEE-cCC---hh-hhHHH----Hc---CceEec--ChHHHhccCCCEEEEe
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQ-GHILRAT-SRT---DH-SQLCH----RS---GISFFS--DKRAFLEADNDVILIS   74 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~~-dr~---~~-~~~a~----~~---g~~~~~--~~~~~~~~~aD~iila   74 (275)
                      |+||+|+| +|.+|+.+.+.|.+. .+++... .++   .. .....    -.   ...+..  +.++. .+++|+||+|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~-~~~~Dvvf~a   82 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEF-SPGVDVVFLA   82 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGT-CTTCSEEEEC
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHH-hcCCCEEEEC
Confidence            57999999 699999999999885 4577654 333   11 11110    11   223332  44442 3789999999


Q ss_pred             cCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           75 TSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        75 vp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +|.....+....+    +..|..++|.++-
T Consensus        83 ~p~~~s~~~~~~~----~~~g~~vIDlSa~  108 (337)
T 3dr3_A           83 TAHEVSHDLAPQF----LEAGCVVFDLSGA  108 (337)
T ss_dssp             SCHHHHHHHHHHH----HHTTCEEEECSST
T ss_pred             CChHHHHHHHHHH----HHCCCEEEEcCCc
Confidence            9998888887776    4568899998874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.68  E-value=7.8e-05  Score=63.23  Aligned_cols=76  Identities=12%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897            9 SSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus         9 ~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      ....++.|||.|. +|..+|..|.+.|.+|++++++.             .++++. +.+||+||.+++...   ++.. 
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t-------------~~L~~~-~~~ADIVI~Avg~p~---~I~~-  209 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT-------------KDIGSM-TRSSKIVVVAVGRPG---FLNR-  209 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHH-HHHSSEEEECSSCTT---CBCG-
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc-------------ccHHHh-hccCCEEEECCCCCc---cccH-
Confidence            4678999999875 89999999999999999998642             456665 489999999998643   1111 


Q ss_pred             CCCCCCCCcEEEeCCCC
Q 023897           88 PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~  104 (275)
                      ..  +++|++++|++..
T Consensus       210 ~~--vk~GavVIDvgi~  224 (276)
T 3ngx_A          210 EM--VTPGSVVIDVGIN  224 (276)
T ss_dssp             GG--CCTTCEEEECCCE
T ss_pred             hh--ccCCcEEEEeccC
Confidence            23  7899999999864

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.68  E-value=0.00011  Score=66.76  Aligned_cols=79  Identities=11%  Similarity=0.198  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHH----------CCCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIK----------QGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~----------~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp   76 (275)
                      |+++||+|||+|.||+.+++.|.+          .+.+|. ++|+++........+...++++++++. .+.|+|++|+|
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp   87 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIG   87 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCC
Confidence            456799999999999999988764          234555 578887532222235667888888642 25799999999


Q ss_pred             c-hhHHHHhhcC
Q 023897           77 I-LSLSEVLNSL   87 (275)
Q Consensus        77 ~-~~~~~v~~~l   87 (275)
                      . ....+.+...
T Consensus        88 ~~~~h~~~~~~A   99 (444)
T 3mtj_A           88 GLEPARELVMQA   99 (444)
T ss_dssp             SSTTHHHHHHHH
T ss_pred             CchHHHHHHHHH
Confidence            6 5555555443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.67  E-value=1.2e-05  Score=68.88  Aligned_cols=113  Identities=7%  Similarity=-0.019  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      .....++.|+|+|.+|++++..|.+.|. +|++++|+++........+.  ...++.+  + ++|+||-|||.......-
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~--l-~~DivInaTp~Gm~~~~~  195 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN--L-KGDVIINCTPKGMYPKEG  195 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT--C-CCSEEEECSSTTSTTSTT
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh--c-cCCEEEECCccCccCCCc
Confidence            3456799999999999999999999998 99999999864322222222  1122222  2 799999999975321110


Q ss_pred             h-cCCCCCCCCCcEEEeCCCCC--hhHHHHHHhhCCCCCceeecC
Q 023897           85 N-SLPVHCLQRRTLIADVLSVK--EYPRNVLLQVLPEEMDVLCTH  126 (275)
Q Consensus        85 ~-~l~~~~l~~~~iv~d~~s~k--~~~~~~l~~~l~~~~~~v~~h  126 (275)
                      . .++...++++.+++|+.-..  ++..+..++   .+.+++.+.
T Consensus       196 ~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~---~G~~~~~Gl  237 (282)
T 3fbt_A          196 ESPVDKEVVAKFSSAVDLIYNPVETLFLKYARE---SGVKAVNGL  237 (282)
T ss_dssp             CCSSCHHHHTTCSEEEESCCSSSSCHHHHHHHH---TTCEEECSH
T ss_pred             cCCCCHHHcCCCCEEEEEeeCCCCCHHHHHHHH---CcCeEeCcH
Confidence            0 02111156788999986432  334444333   244554433

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.67  E-value=9.4e-05  Score=63.53  Aligned_cols=78  Identities=9%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChH--HHhccCCCEEEEecCchhHHHH
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKR--AFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~--~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ......++.|||.|. +|..+|..|.+.|..|+++++...             +++  +. +.+||+||.+++...+   
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------~l~l~~~-~~~ADIVI~Avg~p~~---  223 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------TEDMIDY-LRTADIVIAAMGQPGY---  223 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------HHHHHHH-HHTCSEEEECSCCTTC---
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------Cchhhhh-hccCCEEEECCCCCCC---
Confidence            345678999999877 799999999999999999987432             223  54 4899999999996421   


Q ss_pred             hhcCCCCCCCCCcEEEeCCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +.. ..  +++|.+++|++..
T Consensus       224 I~~-~~--vk~GavVIDvgi~  241 (300)
T 4a26_A          224 VKG-EW--IKEGAAVVDVGTT  241 (300)
T ss_dssp             BCG-GG--SCTTCEEEECCCE
T ss_pred             CcH-Hh--cCCCcEEEEEecc
Confidence            111 23  7899999999853

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.67  E-value=9.5e-05  Score=63.07  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ......++.|||.|. +|..+|..|...|..|+++++..             .++.+. +.+||+||.+++...+   +.
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~-~~~ADIVI~Avg~p~l---I~  217 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHH-VENADLLIVAVGKPGF---IP  217 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHH-HHHCSEEEECSCCTTC---BC
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHH-hccCCEEEECCCCcCc---CC
Confidence            456778999999996 69999999999999999997653             355664 4899999999996542   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       218 ~-~~--vk~GavVIDVgi~  233 (288)
T 1b0a_A          218 G-DW--IKEGAIVIDVGIN  233 (288)
T ss_dssp             T-TT--SCTTCEEEECCCE
T ss_pred             H-HH--cCCCcEEEEccCC
Confidence            1 23  7899999999853

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.66  E-value=0.00011  Score=64.50  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc------------------eEecChHHHhccCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI------------------SFFSDKRAFLEADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~------------------~~~~~~~~~~~~~a   68 (275)
                      ++||||+|+|.||..+++.|.+. +.+|. ++|++++.  ..+...|+                  .+..+++++ ..+.
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l-~~~v   80 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL-LEKV   80 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH-HTTC
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHh-ccCC
Confidence            36999999999999999999876 35655 46776532  23334442                  334567775 4789


Q ss_pred             CEEEEecCchhHHHHhh
Q 023897           69 DVILISTSILSLSEVLN   85 (275)
Q Consensus        69 D~iilavp~~~~~~v~~   85 (275)
                      |+|++|+|.....+...
T Consensus        81 DvV~~aTp~~~h~~~a~   97 (334)
T 2czc_A           81 DIIVDATPGGIGAKNKP   97 (334)
T ss_dssp             SEEEECCSTTHHHHHHH
T ss_pred             CEEEECCCccccHHHHH
Confidence            99999999876444443

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.66  E-value=0.00013  Score=54.51  Aligned_cols=103  Identities=14%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             CCCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ...+|+|||+    |.+|..+.+.|.+.||+|+-+++....    -.|...+.++.++ -. .|++++++|++.+.++++
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dl-p~-vDlavi~~p~~~v~~~v~   76 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVI-EG-VDTVTLYINPQNQLSEYN   76 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCC-TT-CCEEEECSCHHHHGGGHH
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHC-CC-CCEEEEEeCHHHHHHHHH
Confidence            3468999996    789999999999999988888765421    1466777788773 35 999999999999999888


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      ++ ..   ....+++..+.......+..++   .+.++++
T Consensus        77 e~~~~---g~k~v~~~~G~~~~e~~~~a~~---~Girvv~  110 (122)
T 3ff4_A           77 YILSL---KPKRVIFNPGTENEELEEILSE---NGIEPVI  110 (122)
T ss_dssp             HHHHH---CCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHHhc---CCCEEEECCCCChHHHHHHHHH---cCCeEEC
Confidence            88 42   3335666554433333333332   3566664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.65  E-value=0.00012  Score=62.19  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             CCCCCCeEEEEcCChH-HHHHHHHHHHC--CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897            7 SSSSTLKIGIIGFGPF-GQFLAKTMIKQ--GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~m-G~sla~~L~~~--g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      ......++.|||.|.+ |..+|..|...  |..|+++.++.             .++.+. +.+||+||.|++...+   
T Consensus       154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------~~L~~~-~~~ADIVI~Avg~p~~---  216 (281)
T 2c2x_A          154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------RDLPAL-TRQADIVVAAVGVAHL---  216 (281)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------SCHHHH-HTTCSEEEECSCCTTC---
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------hHHHHH-HhhCCEEEECCCCCcc---
Confidence            3567789999999975 99999999999  88999997653             356664 4899999999996542   


Q ss_pred             hhcCCCCCCCCCcEEEeCCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +.. ..  +++|.+++|++..
T Consensus       217 I~~-~~--vk~GavVIDVgi~  234 (281)
T 2c2x_A          217 LTA-DM--VRPGAAVIDVGVS  234 (281)
T ss_dssp             BCG-GG--SCTTCEEEECCEE
T ss_pred             cCH-HH--cCCCcEEEEccCC
Confidence            111 23  7889999999853

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.65  E-value=0.00023  Score=62.73  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             CCCCCCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhhh----HHH--Hc-------CceEecChHHHh
Q 023897            6 PSSSSTLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHSQ----LCH--RS-------GISFFSDKRAFL   64 (275)
Q Consensus         6 ~~~~~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~~----~a~--~~-------g~~~~~~~~~~~   64 (275)
                      |.++...||+|+|+ |.+|.+++..|+....       ++.++|.++...    .+.  +.       ++...++..++ 
T Consensus        19 ~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a-   97 (345)
T 4h7p_A           19 PGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVA-   97 (345)
T ss_dssp             ---CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHH-
T ss_pred             CCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHH-
Confidence            44556679999996 9999999999988643       799999986321    111  11       12455677775 


Q ss_pred             ccCCCEEEEecCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           65 EADNDVILISTSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        65 ~~~aD~iilavp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ++++|+||++-..                ..+.++.+.+ .+  ..++.+++-+++
T Consensus        98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~--a~~~~~vlvvsN  151 (345)
T 4h7p_A           98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAV--AASDCRVVVVGN  151 (345)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--SCTTCEEEECSS
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhh--ccCceEEEEeCC
Confidence            5899999997532                1234455555 43  456766655543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.64  E-value=8.6e-05  Score=65.55  Aligned_cols=88  Identities=10%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCCh-h-hhHHH----HcC---ceEecChHHHhccCCCEEEEecCch
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTD-H-SQLCH----RSG---ISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~-~-~~~a~----~~g---~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      .++||+|+| .|.+|+.+.+.|.+... +++...+.. . .....    -.|   +.+ .+.++ + .++|+||+|+|..
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~-~~vDvV~~a~g~~   79 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-L-EPADILVLALPHG   79 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-C-CCCSEEEECCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-h-cCCCEEEEcCCcH
Confidence            357999999 69999999999987653 766654332 2 11111    111   222 23333 3 6899999999998


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ...+....+    +..|..++|.++-
T Consensus        80 ~s~~~a~~~----~~aG~~VId~Sa~  101 (345)
T 2ozp_A           80 VFAREFDRY----SALAPVLVDLSAD  101 (345)
T ss_dssp             HHHHTHHHH----HTTCSEEEECSST
T ss_pred             HHHHHHHHH----HHCCCEEEEcCcc
Confidence            877777665    4567889998863

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.64  E-value=4e-05  Score=67.29  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=55.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcCCh-hh-h----HHHHcCc--eEecChHHHhc-cCCCEEEEecCchhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSRTD-HS-Q----LCHRSGI--SFFSDKRAFLE-ADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr~~-~~-~----~a~~~g~--~~~~~~~~~~~-~~aD~iilavp~~~~   80 (275)
                      ++||||||+|.+|...+..| ..+.+|+ ++|+++ +. +    .+.+.|+  ..+++.++++. .+.|+|++|+|+...
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H   80 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN   80 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred             ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence            47999999999999888877 5567776 588876 22 2    2223354  67889998642 358999999999877


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .+++...
T Consensus        81 ~~~~~~a   87 (337)
T 3ip3_A           81 GKILLEA   87 (337)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.63  E-value=0.00019  Score=62.19  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             CCCeEEEE-cC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhh
Q 023897           10 STLKIGII-GF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~II-G~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~   85 (275)
                      ...+++|| |+ |++|...++.|.+.|++ .+++.+|...-..-.|+.++.+++++ .+  ..|++++++|+....++++
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~i~G~~vy~sl~el-~~~~~vD~avI~vP~~~~~~~~~   89 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKTHLGLPVFNTVKEA-KEQTGATASVIYVPPPFAAAAIN   89 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHH-HHHHCCCEEEECCCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcceECCeeeechHHHh-hhcCCCCEEEEecCHHHHHHHHH
Confidence            34578888 98 99999999999999998 44555553211113588888899885 46  7999999999999999988


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      ++
T Consensus        90 e~   91 (305)
T 2fp4_A           90 EA   91 (305)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.61  E-value=3.3e-05  Score=69.74  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC---CeEEEEcCChhh--hHHHHc------CceE-------ecChHHHhccC--CCE
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDHS--QLCHRS------GISF-------FSDKRAFLEAD--NDV   70 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~~~dr~~~~--~~a~~~------g~~~-------~~~~~~~~~~~--aD~   70 (275)
                      |+||+|+|+|.+|+.+++.|.+.|   .+|.+++|+.+.  +.+.+.      .+..       ..+++++ +++  .|+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~-l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVAL-INEVKPQI   79 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH-HHHHCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHH-HHhhCCCE
Confidence            369999999999999999999988   389999999852  222221      2321       1223443 344  899


Q ss_pred             EEEecCchhHHHHhh
Q 023897           71 ILISTSILSLSEVLN   85 (275)
Q Consensus        71 iilavp~~~~~~v~~   85 (275)
                      ||.|+|+.....+++
T Consensus        80 Vin~ag~~~~~~v~~   94 (405)
T 4ina_A           80 VLNIALPYQDLTIME   94 (405)
T ss_dssp             EEECSCGGGHHHHHH
T ss_pred             EEECCCcccChHHHH
Confidence            999999865444444

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.60  E-value=0.00022  Score=62.41  Aligned_cols=67  Identities=24%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh---hhHHHHcCceEe--cChHHHhc-cCCCEEEEe--cCc
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH---SQLCHRSGISFF--SDKRAFLE-ADNDVILIS--TSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~---~~~a~~~g~~~~--~~~~~~~~-~~aD~iila--vp~   77 (275)
                      .++||.|||.|.+|.+ +|+.|.+.|++|+++|+++.   .+...+.|+.+.  .+.+. +. .++|+||++  +|+
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~-l~~~~~d~vV~Spgi~~   78 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQ-LDEFKADVYVIGNVAKR   78 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGG-GGSCCCSEEEECTTCCT
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHH-cCCCCCCEEEECCCcCC
Confidence            4679999999999996 99999999999999998752   234455688654  33444 33 379999986  554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.59  E-value=0.00015  Score=61.83  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHH----
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE----   82 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~----   82 (275)
                      ..+++.|||+|.+|++++..|.+.|. +|++++|+.+.  ..+.+.+.....+..  + .++|+||-|||......    
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~-~~~DivInaTp~gm~~~~~~~  194 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--N-QQADILVNVTSIGMKGGKEEM  194 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--T-CCCSEEEECSSTTCTTSTTTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--c-ccCCEEEECCCCCccCccccC
Confidence            34689999999999999999999997 89999999753  345555554433332  2 68999999999764211    


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .. .++...++++.+++|+..
T Consensus       195 ~~-~~~~~~l~~~~~v~DlvY  214 (271)
T 1npy_A          195 DL-AFPKAFIDNASVAFDVVA  214 (271)
T ss_dssp             SC-SSCHHHHHHCSEEEECCC
T ss_pred             CC-CCCHHHcCCCCEEEEeec
Confidence            00 011001345677888764

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.59  E-value=0.00017  Score=65.46  Aligned_cols=78  Identities=23%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHc-C----------------------ceEecChH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRS-G----------------------ISFFSDKR   61 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~-g----------------------~~~~~~~~   61 (275)
                      .++.||||||+|.||+.++..+.+. +.+|. ++|++++.  ..+.+. |                      ...+++.+
T Consensus        21 ~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e  100 (446)
T 3upl_A           21 GKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND  100 (446)
T ss_dssp             TCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred             CCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence            3457999999999999999988765 55655 58898853  222222 3                      35678898


Q ss_pred             HHhc-cCCCEEEEecCch-hHHHHhhc
Q 023897           62 AFLE-ADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus        62 ~~~~-~~aD~iilavp~~-~~~~v~~~   86 (275)
                      +++. .+.|+|++|+|.. ...++...
T Consensus       101 eLL~d~dIDaVviaTp~p~~H~e~a~~  127 (446)
T 3upl_A          101 LILSNPLIDVIIDATGIPEVGAETGIA  127 (446)
T ss_dssp             HHHTCTTCCEEEECSCCHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEEcCCChHHHHHHHHH
Confidence            8642 2579999999864 33344433

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.58  E-value=0.00019  Score=61.17  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....+++.|||.|. +|..+|..|...|..|+++.+..             .++++. +.+||+||.+++...+   +.
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-------------~~L~~~-~~~ADIVI~Avg~p~~---I~  219 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-------------RDLADH-VSRADLVVVAAGKPGL---VK  219 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHH-HHTCSEEEECCCCTTC---BC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC-------------cCHHHH-hccCCEEEECCCCCCC---CC
Confidence            455778999999876 89999999999999999987642             355564 4899999999985421   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       220 ~-~~--vk~GavVIDvgi~  235 (286)
T 4a5o_A          220 G-EW--IKEGAIVIDVGIN  235 (286)
T ss_dssp             G-GG--SCTTCEEEECCSC
T ss_pred             H-HH--cCCCeEEEEeccc
Confidence            1 23  7899999999854

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.58  E-value=0.00025  Score=61.19  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--C-CCEEEEecCchhHHHHhh
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--D-NDVILISTSILSLSEVLN   85 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~-aD~iilavp~~~~~~v~~   85 (275)
                      ...+|.|+|+ |++|..+.+.+.+.|++ .++..++......-.|+.++.+++++ .+  . .|+++++||+....++++
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i~G~~vy~sl~el-~~~~~~~DvaIi~vp~~~~~~~v~   89 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSEVHGVPVYDSVKEA-LAEHPEINTSIVFVPAPFAPDAVY   89 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHH-HHHCTTCCEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCceECCEeeeCCHHHH-hhcCCCCCEEEEecCHHHHHHHHH
Confidence            4567888897 99999999999999998 44454553210012588889999885 34  4 999999999999999988


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      +.
T Consensus        90 ea   91 (297)
T 2yv2_A           90 EA   91 (297)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.57  E-value=0.00019  Score=63.70  Aligned_cols=87  Identities=13%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEcCChh--hhHHHH----cC-----ceEecChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRATSRTDH--SQLCHR----SG-----ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~dr~~~--~~~a~~----~g-----~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +++||+|+| .|.+|+.+.+.|.+.. +++........  ......    .+     +... + ++. ..++|+||+|+|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~-~~~vDvVf~atp   91 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DAD-FSTVDAVFCCLP   91 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCC-GGGCSEEEECCC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhH-hcCCCEEEEcCC
Confidence            446999999 8999999999998875 37766543322  222211    12     1121 2 332 367999999999


Q ss_pred             chhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           77 ILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        77 ~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      .....+....+     ..|..++|.++-
T Consensus        92 ~~~s~~~a~~~-----~aG~~VId~sa~  114 (359)
T 1xyg_A           92 HGTTQEIIKEL-----PTALKIVDLSAD  114 (359)
T ss_dssp             TTTHHHHHHTS-----CTTCEEEECSST
T ss_pred             chhHHHHHHHH-----hCCCEEEECCcc
Confidence            98777776664     346789998864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.55  E-value=0.00031  Score=61.56  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCC----hhhhH--H--HHc-------CceEecChHHHhcc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRT----DHSQL--C--HRS-------GISFFSDKRAFLEA   66 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~----~~~~~--a--~~~-------g~~~~~~~~~~~~~   66 (275)
                      +.|||+|+|+ |.+|++++..|...|+       +|.++|++    ++...  +  ...       .+..+++..++ ++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a-l~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA-FK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH-TT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH-hC
Confidence            4579999997 9999999999998885       89999998    43111  1  111       12345677775 48


Q ss_pred             CCCEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           67 DNDVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        67 ~aD~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ++|+||++....                .+.++++.+ .+  ..++.+++.+++
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~~p~a~ii~~SN  134 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV--ASRNIKVLVVGN  134 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--SCTTCEEEECSS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEccC
Confidence            999999986431                134555565 33  235666666654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.54  E-value=0.001  Score=57.58  Aligned_cols=65  Identities=15%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcC--Chhh-h-HHH---H-----cCceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSR--TDHS-Q-LCH---R-----SGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr--~~~~-~-~a~---~-----~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|+| +|.+|++++..|...|+  ++.++|+  +++. + .+.   +     ..+.+..+..++ ++++|+||++..
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a-~~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYED-TAGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGG-GTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHH-hCCCCEEEEcCC
Confidence            6999999 99999999999998875  7899999  6532 1 111   1     122332223444 489999999975


Q ss_pred             c
Q 023897           77 I   77 (275)
Q Consensus        77 ~   77 (275)
                      .
T Consensus        80 ~   80 (303)
T 1o6z_A           80 I   80 (303)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.54  E-value=4.8e-05  Score=62.30  Aligned_cols=77  Identities=18%  Similarity=0.183  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHH--HHCCCeEE-EEcCChh-hhHH-HHcCceE--ecChHHHhcc--CCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTM--IKQGHILR-ATSRTDH-SQLC-HRSGISF--FSDKRAFLEA--DNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L--~~~g~~V~-~~dr~~~-~~~a-~~~g~~~--~~~~~~~~~~--~aD~iilavp~~~~   80 (275)
                      ...+|+|+|+|++|.++++.+  .+.|+++. ++|.++. ..-. .-.|+.+  .+++++. ++  +.|.+++|+|....
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~-v~~~~Id~vIIAvPs~~a  161 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDH-LIDSDIETAILTVPSTEA  161 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHH-C-CCSCCEEEECSCGGGH
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHH-HHHcCCCEEEEecCchhH
Confidence            346899999999999999984  34577766 4788876 4322 2235543  3456664 33  58999999999877


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .++.+.+
T Consensus       162 q~v~d~l  168 (212)
T 3keo_A          162 QEVADIL  168 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776665

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.53  E-value=0.00017  Score=60.48  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      ..|||+++|+|+||+.+++.  . ++++. +|+ ++..    +.|+..++++++++ .++|+|+-|.+...+.+.+..+ 
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~g----elgv~a~~d~d~ll-a~pD~VVe~A~~~av~e~~~~i-   80 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISK----DIPGVVRLDEFQVP-SDVSTVVECASPEAVKEYSLQI-   80 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCC----CCSSSEECSSCCCC-TTCCEEEECSCHHHHHHHHHHH-
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cccc----ccCceeeCCHHHHh-hCCCEEEECCCHHHHHHHHHHH-
Confidence            46899999999999999998  4 77765 566 3211    12777788888864 6999999999998888866665 


Q ss_pred             CCCCCCCcEEEeC
Q 023897           89 VHCLQRRTLIADV  101 (275)
Q Consensus        89 ~~~l~~~~iv~d~  101 (275)
                         |..|.-++..
T Consensus        81 ---L~aG~dvv~~   90 (253)
T 1j5p_A           81 ---LKNPVNYIII   90 (253)
T ss_dssp             ---TTSSSEEEEC
T ss_pred             ---HHCCCCEEEc
Confidence               5556555543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.52  E-value=9.5e-05  Score=65.04  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChh-h-hHHHHc------------------CceEecChHHHhccCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDH-S-QLCHRS------------------GISFFSDKRAFLEADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~-~-~~a~~~------------------g~~~~~~~~~~~~~~a   68 (275)
                      ++||||+|+|.||+.+++.|.+. +++|.+ .++++. . ..+.+.                  ++.+..+.++. ..++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~-~~~v   79 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM-LDEA   79 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH-HHTC
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH-hcCC
Confidence            36999999999999999999874 456654 566642 1 222222                  22222345553 3689


Q ss_pred             CEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        69 D~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      |+||.|+|.....+.....    +..|..++|.++.+
T Consensus        80 DvV~~atp~~~~~~~a~~~----l~aG~~VId~sp~~  112 (337)
T 1cf2_P           80 DIVIDCTPEGIGAKNLKMY----KEKGIKAIFQGGEK  112 (337)
T ss_dssp             SEEEECCSTTHHHHHHHHH----HHHTCCEEECTTSC
T ss_pred             CEEEECCCchhhHHHHHHH----HHcCCEEEEecCCC
Confidence            9999999998766666554    23345566655543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.48  E-value=0.00024  Score=60.31  Aligned_cols=68  Identities=22%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEe-cChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFF-SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~-~~~~~~~~~~aD~iilavp~   77 (275)
                      ++|||.|.|+|.+|+.+++.|.+.|++|++.+|++.. ......++... .|+.+.-..++|+||.+...
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            3589999999999999999999999999999999853 33333455321 12111002689999998754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.48  E-value=0.00074  Score=58.65  Aligned_cols=65  Identities=23%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHC-C--CeEEEEcCChhh-hHHH--H-c--CceEe----cChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQ-G--HILRATSRTDHS-QLCH--R-S--GISFF----SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~-g--~~V~~~dr~~~~-~~a~--~-~--g~~~~----~~~~~~~~~~aD~iilavp~   77 (275)
                      |||+||| +|.+|.+++..|... +  .++.++|+++.. ..+.  . .  ...+.    ++..+. ++++|+||++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~-~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHH-HTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHH-hCCCCEEEEeCCC
Confidence            7999999 899999999999875 5  489999998621 1111  1 1  12222    233443 4899999999743

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.46  E-value=0.0015  Score=53.86  Aligned_cols=88  Identities=8%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ....++|.|||.|.+|..-++.|.+.|.+|++++++..  .. .+.+.++....   ..+.  +.++|+||.|+....+.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~d--L~~adLVIaAT~d~~~N  105 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEED--LLNVFFIVVATNDQAVN  105 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGG--SSSCSEEEECCCCTHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhH--hCCCCEEEECCCCHHHH
Confidence            35678999999999999999999999999999988753  22 33333443221   2233  37899999999887765


Q ss_pred             HHhhcCCCCCCCCCcEEEeCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ..+...    .+ ..+.+++.
T Consensus       106 ~~I~~~----ak-~gi~VNvv  121 (223)
T 3dfz_A          106 KFVKQH----IK-NDQLVNMA  121 (223)
T ss_dssp             HHHHHH----SC-TTCEEEC-
T ss_pred             HHHHHH----Hh-CCCEEEEe
Confidence            555554    23 34555554

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.43  E-value=0.0003  Score=62.18  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=58.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEc-CC-hh-hhHHHH-------------cCceEec-ChHHHhccCCCE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRATS-RT-DH-SQLCHR-------------SGISFFS-DKRAFLEADNDV   70 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d-r~-~~-~~~a~~-------------~g~~~~~-~~~~~~~~~aD~   70 (275)
                      +++||+|+| +|.+|+.+.+.|.+.. .+|.... .+ .. ......             ..+.+.. ++++ + .++|+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~vDv   80 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-H-KDVDV   80 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-G-TTCSE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-h-cCCCE
Confidence            457999999 7999999999998764 4776553 22 11 112111             1222322 3344 3 68999


Q ss_pred             EEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        71 iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ||+|+|.....+....+    +..|..++|.++.
T Consensus        81 Vf~atp~~~s~~~a~~~----~~aG~~VId~s~~  110 (350)
T 2ep5_A           81 VLSALPNELAESIELEL----VKNGKIVVSNASP  110 (350)
T ss_dssp             EEECCCHHHHHHHHHHH----HHTTCEEEECSST
T ss_pred             EEECCChHHHHHHHHHH----HHCCCEEEECCcc
Confidence            99999988777777765    4456778988753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.41  E-value=0.00021  Score=62.19  Aligned_cols=96  Identities=15%  Similarity=0.102  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC---hhh--hHHHH----cCc--eE--ecC---hHHHhccCCCE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT---DHS--QLCHR----SGI--SF--FSD---KRAFLEADNDV   70 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~---~~~--~~a~~----~g~--~~--~~~---~~~~~~~~aD~   70 (275)
                      ....+++.|+|+|.+|++++..|++.|. +|++++|+   .+.  +.+.+    .++  ..  .++   +.+. +.++|+
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~-l~~aDi  229 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE-IAESVI  229 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH-HHTCSE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh-hcCCCE
Confidence            4566799999999999999999999998 89999999   532  22222    232  21  122   3343 368999


Q ss_pred             EEEecCchhHHHHh-hcC-CCCCCCCCcEEEeCCCC
Q 023897           71 ILISTSILSLSEVL-NSL-PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        71 iilavp~~~~~~v~-~~l-~~~~l~~~~iv~d~~s~  104 (275)
                      ||-|||.......- ..+ +...++++.+++|+.-.
T Consensus       230 IINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~  265 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYK  265 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCS
T ss_pred             EEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccC
Confidence            99999975322100 011 11126778899998754

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.41  E-value=0.00021  Score=63.21  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-----C-eEEEEc-CC-hhhhHH------HH-cCceE-ecChHHHhccCCCEEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-----H-ILRATS-RT-DHSQLC------HR-SGISF-FSDKRAFLEADNDVIL   72 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-----~-~V~~~d-r~-~~~~~a------~~-~g~~~-~~~~~~~~~~~aD~ii   72 (275)
                      .++||+|+| .|.+|+.+.+.|.+.+     . +|+.+. ++ ......      .. ..+.. ..+.++ + .++|+||
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~DvVf   85 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAV-L-GGHDAVF   85 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHH-H-TTCSEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHH-h-cCCCEEE
Confidence            457999999 8999999999999877     3 666553 32 211111      00 12222 123344 3 6899999


Q ss_pred             EecCchhHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        73 lavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      +|+|.....+++..+ .    .|..++|.++..
T Consensus        86 ~alg~~~s~~~~~~~-~----~G~~vIDlSa~~  113 (352)
T 2nqt_A           86 LALPHGHSAVLAQQL-S----PETLIIDCGADF  113 (352)
T ss_dssp             ECCTTSCCHHHHHHS-C----TTSEEEECSSTT
T ss_pred             ECCCCcchHHHHHHH-h----CCCEEEEECCCc
Confidence            999988766766664 2    467899988653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.37  E-value=0.00021  Score=61.37  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcC----------ceEecChHHHhccCCCEEEEecC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSG----------ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g----------~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      ...+++.|+|+|.+|.+++..|.+.| +|++++|+.+.  ..+.+.+          +.. .+..+. ..++|+||.++|
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~DilVn~ag  202 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVD-LDGVDIIINATP  202 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCC-CTTCCEEEECSC
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHh-hCCCCEEEECCC
Confidence            45678999999999999999999999 99999999742  2222211          122 222332 378999999999


Q ss_pred             chhHHHH----hhcCCCCCCCCCcEEEeCCC
Q 023897           77 ILSLSEV----LNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~~~~~~v----~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .......    +.....  ++++.+++|+..
T Consensus       203 ~~~~~~~~~~~~~~~~~--l~~~~~v~Dv~y  231 (287)
T 1nvt_A          203 IGMYPNIDVEPIVKAEK--LREDMVVMDLIY  231 (287)
T ss_dssp             TTCTTCCSSCCSSCSTT--CCSSSEEEECCC
T ss_pred             CCCCCCCCCCCCCCHHH--cCCCCEEEEeee
Confidence            7643210    101122  678889999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.36  E-value=0.00084  Score=55.30  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc-eEe-----cChHHHhccCCCEEEEecCc
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI-SFF-----SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~-~~~-----~~~~~~~~~~aD~iilavp~   77 (275)
                      ..+.|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++. .......++ ...     .+..++ +.+.|+||.+...
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~-~~~~D~vi~~ag~   94 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHA-FASIDAVVFAAGS   94 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGG-GTTCSEEEECCCC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHH-HcCCCEEEECCCC
Confidence            346789999995 99999999999999999999999985 333333344 321     334453 4788999988764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.32  E-value=0.00098  Score=58.81  Aligned_cols=66  Identities=20%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      +...++|+|+|+|++|...|+.+...|.+|+++|+++. .+.+.+.|.+.. +.++++..++|+++-|
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~  238 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC  238 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh
Confidence            45678999999999999999999999999999999875 344555676654 4555432389998754

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.30  E-value=0.0003  Score=64.67  Aligned_cols=63  Identities=14%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             CeEEEEcCChHHHHH--HHHHHH----C--CCeEEEEcCChhh-h----H----HHHcC----ceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFL--AKTMIK----Q--GHILRATSRTDHS-Q----L----CHRSG----ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sl--a~~L~~----~--g~~V~~~dr~~~~-~----~----a~~~g----~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.+|.+.  ...+..    .  +.+|+++|.+++. +    .    ....|    +..+++.+++ +++||+
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eA-l~gAD~   79 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEA-IEGADF   79 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHH-HTTCSE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHH-hCCCCE
Confidence            799999999987553  222332    1  2479999999842 1    1    11223    2567888886 489999


Q ss_pred             EEEec
Q 023897           71 ILIST   75 (275)
Q Consensus        71 iilav   75 (275)
                      ||+++
T Consensus        80 Vi~~~   84 (477)
T 3u95_A           80 IINTA   84 (477)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            99986

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.30  E-value=0.00058  Score=59.69  Aligned_cols=69  Identities=22%  Similarity=0.309  Sum_probs=46.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC---------CCeEE-EEcCChhh-h-------HHHHc-CceEec--ChHHHhc-cCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ---------GHILR-ATSRTDHS-Q-------LCHRS-GISFFS--DKRAFLE-ADN   68 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~---------g~~V~-~~dr~~~~-~-------~a~~~-g~~~~~--~~~~~~~-~~a   68 (275)
                      |+||+|||+|.||+.+++.|.+.         +.+|+ ++|+++.. .       .+... ....++  +.++++. .+.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i   81 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY   81 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence            47999999999999999999875         45655 46777531 1       11111 122333  7777531 368


Q ss_pred             CEEEEecCchh
Q 023897           69 DVILISTSILS   79 (275)
Q Consensus        69 D~iilavp~~~   79 (275)
                      |+|+.|+|++.
T Consensus        82 DvVv~~tp~~~   92 (327)
T 3do5_A           82 DVLIEASVTRV   92 (327)
T ss_dssp             SEEEECCCCC-
T ss_pred             CEEEECCCCcc
Confidence            99999999875

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.29  E-value=0.00026  Score=62.10  Aligned_cols=86  Identities=13%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC------C--CeEE-EEcCChhh-hH-------HH---HcCce-Eec---ChHHHhc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ------G--HILR-ATSRTDHS-QL-------CH---RSGIS-FFS---DKRAFLE   65 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~------g--~~V~-~~dr~~~~-~~-------a~---~~g~~-~~~---~~~~~~~   65 (275)
                      +++||+|||+|.||+.++..|.+.      |  .+|. ++|+++.. ..       +.   ..++. .++   +.++++.
T Consensus         5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~   84 (331)
T 3c8m_A            5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA   84 (331)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred             cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence            457999999999999999999764      2  4554 57887632 11       11   12331 344   7777542


Q ss_pred             cCCCEEEEecCch----hHHHHhhcCCCCCCCCCcEEE
Q 023897           66 ADNDVILISTSIL----SLSEVLNSLPVHCLQRRTLIA   99 (275)
Q Consensus        66 ~~aD~iilavp~~----~~~~v~~~l~~~~l~~~~iv~   99 (275)
                      .+.|+|+.|+|..    ...+...+.    +..|.-|+
T Consensus        85 ~~iDvVv~~t~~~~~~~~~~~~~~~A----L~aGkhVv  118 (331)
T 3c8m_A           85 RDFDIVVDATPASADGKKELAFYKET----FENGKDVV  118 (331)
T ss_dssp             SSCSEEEECSCCCSSSHHHHHHHHHH----HHTTCEEE
T ss_pred             CCCCEEEECCCCCCccchHHHHHHHH----HHCCCeEE
Confidence            4789999999984    444444443    34455555

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.28  E-value=0.00017  Score=63.46  Aligned_cols=89  Identities=10%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC---CeEEEEc-CC-hhhhHHH-HcCceEec-ChHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG---HILRATS-RT-DHSQLCH-RSGISFFS-DKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g---~~V~~~d-r~-~~~~~a~-~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      +++||+|+| .|.+|+.+.+.|.+.+   ++++.+. ++ ....... ...+.+.. +.+.  ..++|+||.|+|.....
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~--~~~vDvVf~a~g~~~s~   79 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFD--WSQVHIALFSAGGELSA   79 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCC--GGGCSEEEECSCHHHHH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHH--hcCCCEEEECCCchHHH
Confidence            358999999 8999999999998874   3565543 32 2111100 01122211 2222  25799999999998777


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +....+    +..|..++|.++.
T Consensus        80 ~~a~~~----~~~G~~vId~s~~   98 (336)
T 2r00_A           80 KWAPIA----AEAGVVVIDNTSH   98 (336)
T ss_dssp             HHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHH----HHcCCEEEEcCCc
Confidence            777765    4557899998764

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.25  E-value=0.00026  Score=62.34  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=56.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEE-cCChh-hhHHH-HcCceEe-cChHHHhccCCCEEEEecCchhHHH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRAT-SRTDH-SQLCH-RSGISFF-SDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~-dr~~~-~~~a~-~~g~~~~-~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      +|||+|+| .|.+|+.+.+.|.+.++   ++... +++.. ..... ...+... .+.++  ..++|+||.|+|.....+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~--~~~~DvV~~a~g~~~s~~   83 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD--FSSVGLAFFAAAAEVSRA   83 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC--GGGCSEEEECSCHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH--hcCCCEEEEcCCcHHHHH
Confidence            47999999 79999999999986654   45544 44321 11000 0111111 12222  267999999999887777


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ....+    +..|..++|.++.
T Consensus        84 ~a~~~----~~aG~kvId~Sa~  101 (340)
T 2hjs_A           84 HAERA----RAAGCSVIDLSGA  101 (340)
T ss_dssp             HHHHH----HHTTCEEEETTCT
T ss_pred             HHHHH----HHCCCEEEEeCCC
Confidence            77665    3457778888763

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.24  E-value=0.00034  Score=60.78  Aligned_cols=96  Identities=15%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC---hhh--hHHHH----cCce--Ee--cCh---HHHhccCCCE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT---DHS--QLCHR----SGIS--FF--SDK---RAFLEADNDV   70 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~---~~~--~~a~~----~g~~--~~--~~~---~~~~~~~aD~   70 (275)
                      .....++.|+|+|.+|++++..|.+.|. +|++++|+   .+.  +.+.+    .+..  ..  .+.   .+. +.++|+
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~-l~~~Di  223 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEA-LASADI  223 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH-HHHCSE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhh-ccCceE
Confidence            3456799999999999999999999998 89999999   532  22222    2322  21  232   333 368999


Q ss_pred             EEEecCchhHHHHhhcC--CCCCCCCCcEEEeCCCC
Q 023897           71 ILISTSILSLSEVLNSL--PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        71 iilavp~~~~~~v~~~l--~~~~l~~~~iv~d~~s~  104 (275)
                      ||-|||......--..+  +...++++.++.|+.-.
T Consensus       224 IINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~  259 (312)
T 3t4e_A          224 LTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYN  259 (312)
T ss_dssp             EEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCS
T ss_pred             EEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccC
Confidence            99999976311100111  11126778899998743

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.24  E-value=0.0016  Score=52.93  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE-ecCh----HHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF-FSDK----RAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~-~~~~----~~~~~~~aD~iilavp~   77 (275)
                      |||.|.|+ |.+|+.+++.|.+.|++|++.+|++.. ......++.. ..|+    .++ +.++|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~-~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEAD-LDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHH-HTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhh-cccCCEEEECCcc
Confidence            68999995 999999999999999999999999853 2222234421 1111    133 4789999998754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.23  E-value=0.0007  Score=61.83  Aligned_cols=69  Identities=14%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-----hhHHHHcCceEec--ChHHHhccC-CCEEEEe--cCc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-----SQLCHRSGISFFS--DKRAFLEAD-NDVILIS--TSI   77 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-----~~~a~~~g~~~~~--~~~~~~~~~-aD~iila--vp~   77 (275)
                      ....+||.|||.|..|.+.|+.|.+.|++|+++|+++.     .+...+.|+.+..  +.++. ..+ +|+||++  +|+
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~-~~~~~d~vv~spgi~~   84 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL-LDEDFCYMIKNPGIPY   84 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGG-GGSCEEEEEECTTSCT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHh-hcCCCCEEEECCcCCC
Confidence            34567999999999999999999999999999998642     2334556886532  23332 355 8999997  454

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.22  E-value=0.00051  Score=61.28  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCC-CeEE-EE-cC-ChhhhHHHH-------------cCceEe-cChHHHhccCC
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQG-HILR-AT-SR-TDHSQLCHR-------------SGISFF-SDKRAFLEADN   68 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~-~~-dr-~~~~~~a~~-------------~g~~~~-~~~~~~~~~~a   68 (275)
                      .|.++||+||| .|..|.-|.+.|.+.. .+|. ++ ++ +.-......             ....+. .+..+. .+++
T Consensus        16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~-~~~~   94 (381)
T 3hsk_A           16 HMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGN-FLEC   94 (381)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTT-GGGC
T ss_pred             cCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhh-cccC
Confidence            35567999999 6999999999998865 3664 33 33 321211100             112221 122211 2689


Q ss_pred             CEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        69 D~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |++|+|+|.....++...+    +..|..++|.++-
T Consensus        95 Dvvf~alp~~~s~~~~~~~----~~~G~~VIDlSa~  126 (381)
T 3hsk_A           95 DVVFSGLDADVAGDIEKSF----VEAGLAVVSNAKN  126 (381)
T ss_dssp             SEEEECCCHHHHHHHHHHH----HHTTCEEEECCST
T ss_pred             CEEEECCChhHHHHHHHHH----HhCCCEEEEcCCc
Confidence            9999999999888888776    4567899998864

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.20  E-value=0.0013  Score=57.88  Aligned_cols=87  Identities=16%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhh-h-HHHHc--------------------CceEecChHHHhccC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHS-Q-LCHRS--------------------GISFFSDKRAFLEAD   67 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~-~-~a~~~--------------------g~~~~~~~~~~~~~~   67 (275)
                      +||||+|+|++|+.+++.|.+. +++|.+ .|++++. . .....                    ++.+..+..+. ..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~-~~~   81 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDI-IED   81 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGT-GGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHh-ccC
Confidence            6999999999999999999876 467654 4544321 1 11111                    12222233332 358


Q ss_pred             CCEEEEecCchhHHHHhh-cCCCCCCCCCcEEEeCCC
Q 023897           68 NDVILISTSILSLSEVLN-SLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        68 aD~iilavp~~~~~~v~~-~l~~~~l~~~~iv~d~~s  103 (275)
                      +|+||.|+|.....+... ..    ++.|+.+++.++
T Consensus        82 vDiV~eatg~~~s~~~a~~~~----l~aG~~VI~sap  114 (343)
T 2yyy_A           82 ADIVVDGAPKKIGKQNLENIY----KPHKVKAILQGG  114 (343)
T ss_dssp             CSEEEECCCTTHHHHHHHHTT----TTTTCEEEECTT
T ss_pred             CCEEEECCCccccHHHHHHHH----HHCCCEEEECCC
Confidence            999999999887556554 43    445555655443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.17  E-value=0.001  Score=53.83  Aligned_cols=65  Identities=26%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-ecCh----HHHhccCCCEEEEecCc
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-FSDK----RAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-~~~~----~~~~~~~aD~iilavp~   77 (275)
                      |||.|.| .|.+|+.+++.|.+.|++|++.+|++........++.. ..|+    .+. +.++|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~-~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSD-LSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHH-HTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhh-hcCCCEEEECCcC
Confidence            6899999 59999999999999999999999997532211134421 1111    133 4789999998765

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.17  E-value=0.00094  Score=58.59  Aligned_cols=89  Identities=18%  Similarity=0.296  Sum_probs=56.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcC--Chhh-hHHHH-------c-C--------c-------eEe--cCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSR--TDHS-QLCHR-------S-G--------I-------SFF--SDK   60 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr--~~~~-~~a~~-------~-g--------~-------~~~--~~~   60 (275)
                      ++||||+|+|++|+.+++.|.+. +.+|.+ .|+  ++.. ....+       . +        +       .+.  .++
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~   82 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   82 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence            46999999999999999998775 467665 454  3332 21111       0 0        0       112  245


Q ss_pred             HHHh--ccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           61 RAFL--EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        61 ~~~~--~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ++.-  ..++|+||.|+|.....+.....    +..|...+|++.
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~----l~aGak~V~iSa  123 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTTMEKAGAH----LQGGAKRVIISA  123 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGG----GGGTCSEEEESS
T ss_pred             HHCccccCCCCEEEECCCchhhHHHHHHH----HhCCCeEEEecc
Confidence            5420  13789999999998777777665    555666666654

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.15  E-value=0.00027  Score=62.73  Aligned_cols=87  Identities=14%  Similarity=0.152  Sum_probs=57.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEc-C-ChhhhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchhHH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATS-R-TDHSQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~d-r-~~~~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ++||+||| .|..|.-|.+.|.+.+|   ++.... + +...... ..|.  .+. .+.+.  .+++|+||.|+|.....
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~~~~~~~~~~~~~--~~~~Dvvf~a~~~~~s~   78 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKDQDITIEETTETA--FEGVDIALFSAGSSTSA   78 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETTEEEEEEECCTTT--TTTCSEEEECSCHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecCCCceEeeCCHHH--hcCCCEEEECCChHhHH
Confidence            47999999 79999999999998765   344332 2 2211111 1121  221 12223  37899999999988877


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +....+    +..|..++|.++-
T Consensus        79 ~~a~~~----~~~G~~vIDlSa~   97 (366)
T 3pwk_A           79 KYAPYA----VKAGVVVVDNTSY   97 (366)
T ss_dssp             HHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHH----HHCCCEEEEcCCc
Confidence            777776    4567899998863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.00036  Score=57.07  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------ecChHHHhccCCCEEEEecCch
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------FSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp~~   78 (275)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|++........++..       ..++.++ ++++|+||.+....
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEV-CKGADAVISAFNPG   78 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHH-HTTCSEEEECCCC-
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHH-hcCCCEEEEeCcCC
Confidence            57999999 69999999999999999999999997431111122221       1223443 47899999987653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.14  E-value=0.0014  Score=54.98  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ..+|.|||+|.+|+.++..|+..|. +|+++|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4689999999999999999999997 899999885

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.11  E-value=0.0043  Score=51.90  Aligned_cols=62  Identities=16%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHC-CCeEEE-EcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQ-GHILRA-TSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~-g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      |||+|+|+ |.||+.++..+.+. ++++.+ +|++              .++++++...+|++|-++++....+.+...
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------------~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a   65 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------------DPLSLLTDGNTEVVIDFTHPDVVMGNLEFL   65 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------------CCTHHHHHTTCCEEEECSCTTTHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------------CCHHHHhccCCcEEEEccChHHHHHHHHHH
Confidence            68999996 99999999999866 888774 6654              234443223789999788888777776654

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.10  E-value=0.00021  Score=62.64  Aligned_cols=74  Identities=11%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC---------CeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG---------HILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g---------~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      +++||+|||+|.||+.+++.+.+..         .+|. ++||+........ ....+++.+++ + +.|+|+.|+|...
T Consensus         2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~-~~~~~~d~~~l-l-~iDvVve~t~~~~   78 (332)
T 2ejw_A            2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP-QELLRAEPFDL-L-EADLVVEAMGGVE   78 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC-GGGEESSCCCC-T-TCSEEEECCCCSH
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC-cccccCCHHHH-h-CCCEEEECCCCcH
Confidence            3478999999999999999998763         4554 5787754211111 11356777774 4 8999999999763


Q ss_pred             -HHHHhhc
Q 023897           80 -LSEVLNS   86 (275)
Q Consensus        80 -~~~v~~~   86 (275)
                       ..+.+.+
T Consensus        79 ~a~~~~~~   86 (332)
T 2ejw_A           79 APLRLVLP   86 (332)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             3445443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.08  E-value=0.0012  Score=52.86  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE-e---c---ChHHHhccCCCEEEEecCc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF-F---S---DKRAFLEADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~-~---~---~~~~~~~~~aD~iilavp~   77 (275)
                      .|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++.. ......++.. .   .   ++.++ ++++|+||.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHH-HcCCCEEEECccC
Confidence            379999995 999999999999999999999998742 2111223321 1   1   23343 4678998888764

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.07  E-value=0.0003  Score=62.36  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCC----CeEE-EEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQG----HILR-ATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g----~~V~-~~dr~~   44 (275)
                      +++||+|||+|.||+.++..|.+..    .+|+ ++|++.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~   42 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER   42 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence            4579999999999999999999863    4554 356543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.04  E-value=0.002  Score=56.78  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHC-CCeEEEE-c-CCh-h-hhHHHHc-----------------------CceEec-
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQ-GHILRAT-S-RTD-H-SQLCHRS-----------------------GISFFS-   58 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~-d-r~~-~-~~~a~~~-----------------------g~~~~~-   58 (275)
                      ...++||+|+|+|++|+-+.+.|.+. .++|... | +.. . .....+.                       .+.+.. 
T Consensus        14 ~~~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~   93 (354)
T 3cps_A           14 LYFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQA   93 (354)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECC
T ss_pred             cCcceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEec
Confidence            34567999999999999999999876 5677654 4 222 2 1111110                       011221 


Q ss_pred             -ChHHHhc--cCCCEEEEecCchhHHHHhhcCCCCCCCCCc--EEEeCCC
Q 023897           59 -DKRAFLE--ADNDVILISTSILSLSEVLNSLPVHCLQRRT--LIADVLS  103 (275)
Q Consensus        59 -~~~~~~~--~~aD~iilavp~~~~~~v~~~l~~~~l~~~~--iv~d~~s  103 (275)
                       ++++.-.  .++|+||.|+|.....+.....    +..|.  +|+|..+
T Consensus        94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~----l~~GakkvVId~pa  139 (354)
T 3cps_A           94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLH----LKGGAKKVIISAPP  139 (354)
T ss_dssp             SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG----GTTTCSEEEESSCC
T ss_pred             CChHHCCcccCCCCEEEECCCchhhHHHHHHH----HHcCCcEEEEeCCC
Confidence             4443100  3789999999988777777665    45565  8888765

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.04  E-value=0.00049  Score=60.98  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChh-hhHHHH-------------cCceEe-cChHHHhccCCCEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDH-SQLCHR-------------SGISFF-SDKRAFLEADNDVI   71 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~-~~~a~~-------------~g~~~~-~~~~~~~~~~aD~i   71 (275)
                      +++||+||| .|..|+-|.+.|.+.. .++... +++.. ......             ....+. .+.++  +.++|++
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~--~~~vDvv   83 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL--MDDVDII   83 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG--CTTCCEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH--hcCCCEE
Confidence            457999999 6999999999887764 355543 33321 211110             122221 23333  3789999


Q ss_pred             EEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           72 LISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        72 ilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |+|+|.....+....+    +..|..++|.++-
T Consensus        84 f~a~p~~~s~~~a~~~----~~~G~~vIDlSa~  112 (359)
T 4dpk_A           84 FSPLPQGAAGPVEEQF----AKEGFPVISNSPD  112 (359)
T ss_dssp             EECCCTTTHHHHHHHH----HHTTCEEEECSST
T ss_pred             EECCChHHHHHHHHHH----HHCCCEEEEcCCC
Confidence            9999998888887776    4568899998864

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.04  E-value=0.00049  Score=60.98  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChh-hhHHHH-------------cCceEe-cChHHHhccCCCEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDH-SQLCHR-------------SGISFF-SDKRAFLEADNDVI   71 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~-~~~a~~-------------~g~~~~-~~~~~~~~~~aD~i   71 (275)
                      +++||+||| .|..|+-|.+.|.+.. .++... +++.. ......             ....+. .+.++  +.++|++
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~--~~~vDvv   83 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL--MDDVDII   83 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG--CTTCCEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH--hcCCCEE
Confidence            457999999 6999999999887764 355543 33321 211110             122221 23333  3789999


Q ss_pred             EEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           72 LISTSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        72 ilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      |+|+|.....+....+    +..|..++|.++-
T Consensus        84 f~a~p~~~s~~~a~~~----~~~G~~vIDlSa~  112 (359)
T 4dpl_A           84 FSPLPQGAAGPVEEQF----AKEGFPVISNSPD  112 (359)
T ss_dssp             EECCCTTTHHHHHHHH----HHTTCEEEECSST
T ss_pred             EECCChHHHHHHHHHH----HHCCCEEEEcCCC
Confidence            9999998888887776    4568899998864

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.03  E-value=0.0021  Score=56.33  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=45.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC--e-----EEEEcCChh--hh--HHH--Hc-------CceEecChHHHhccCCC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH--I-----LRATSRTDH--SQ--LCH--RS-------GISFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~--~-----V~~~dr~~~--~~--~a~--~~-------g~~~~~~~~~~~~~~aD   69 (275)
                      .+||+|+| +|.+|++++..|...|.  +     +.++|+++.  ..  .+.  ..       ++...++..+. ++++|
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~-~~daD   81 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIA-FKDLD   81 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHH-TTTCS
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHH-hCCCC
Confidence            47999999 79999999999998875  4     999999752  11  111  11       12344565554 48999


Q ss_pred             EEEEec
Q 023897           70 VILIST   75 (275)
Q Consensus        70 ~iilav   75 (275)
                      +||++-
T Consensus        82 vVvitA   87 (333)
T 5mdh_A           82 VAILVG   87 (333)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999985

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.02  E-value=0.0059  Score=55.10  Aligned_cols=109  Identities=9%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             CCeEEEEcCChH-HHHHHHHHHH--C---CCeEEEEcCChhh-h----HHH----Hc-CceEecChHHHhccCCCEEEEe
Q 023897           11 TLKIGIIGFGPF-GQFLAKTMIK--Q---GHILRATSRTDHS-Q----LCH----RS-GISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        11 ~~~I~IIG~G~m-G~sla~~L~~--~---g~~V~~~dr~~~~-~----~a~----~~-g~~~~~~~~~~~~~~aD~iila   74 (275)
                      ++||+|||+|.. +..+...|..  .   +.+|.++|++++. +    .+.    .. .+..+++..++ +++||+||++
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~a-l~~AD~Viit   80 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGA-VVDAKYVIFQ   80 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHH-HTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHH-hCCCCEEEEc
Confidence            579999999884 2222223344  3   4589999999842 1    111    11 22344676565 4899999999


Q ss_pred             cCch------------------------------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           75 TSIL------------------------------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        75 vp~~------------------------------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      .-..                                    .+.++++.+ .   .. +.+++..++--..+.+.+.+..|
T Consensus        81 agvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~---~~-~A~lin~TNPvdi~t~a~~k~~p  156 (417)
T 1up7_A           81 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRK---TS-NATIVNFTNPSGHITEFVRNYLE  156 (417)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH---TT-CCEEEECSSSHHHHHHHHHHTTC
T ss_pred             CCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHH---HC-CEEEEEeCChHHHHHHHHHHhCC
Confidence            8442                                    134566666 4   34 78888877654445556656543


Q ss_pred             CCCceeec
Q 023897          118 EEMDVLCT  125 (275)
Q Consensus       118 ~~~~~v~~  125 (275)
                       ..++++.
T Consensus       157 -~~rviG~  163 (417)
T 1up7_A          157 -YEKFIGL  163 (417)
T ss_dssp             -CSSEEEC
T ss_pred             -CCCEEEe
Confidence             3356654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.02  E-value=0.0024  Score=56.26  Aligned_cols=88  Identities=19%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEc-CChh-hhHH-----HHcCceEe-cChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATS-RTDH-SQLC-----HRSGISFF-SDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~d-r~~~-~~~a-----~~~g~~~~-~~~~~~~~~~aD~iilavp~~~   79 (275)
                      .+.||+||| .|..|.-|.+.|.+... ++.... ++.. ....     ......+. .+.++. ..++|++|+|+|...
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~-~~~~Dvvf~alp~~~   90 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKV-SKNCDVLFTALPAGA   90 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHH-HHHCSEEEECCSTTH
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHh-hcCCCEEEECCCcHH
Confidence            456999999 69999999999998753 665543 2221 1111     11222221 234443 367999999999888


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ..++...     + .|..|+|.++-
T Consensus        91 s~~~~~~-----~-~g~~VIDlSsd  109 (351)
T 1vkn_A           91 SYDLVRE-----L-KGVKIIDLGAD  109 (351)
T ss_dssp             HHHHHTT-----C-CSCEEEESSST
T ss_pred             HHHHHHH-----h-CCCEEEECChh
Confidence            7777665     4 68899999874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=97.00  E-value=0.0014  Score=60.61  Aligned_cols=66  Identities=18%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEec--ChHHHhccCCCEEEEe--cCc
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFS--DKRAFLEADNDVILIS--TSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~--~~~~~~~~~aD~iila--vp~   77 (275)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|..+.  .....+.|+.+..  +.+.  +.++|+||++  +|+
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~--~~~~d~vV~Spgi~~   93 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPEN--VLDASVVVVSTAISA   93 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGG--GTTCSEEEECTTSCT
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHH--cCCCCEEEECCCCCC
Confidence            3468999999999996 99999999999999998753  3445567886543  3333  3789999987  555

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.99  E-value=0.00096  Score=58.53  Aligned_cols=88  Identities=24%  Similarity=0.388  Sum_probs=55.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcC--Chhh-hHHH----HcC---------------------ceEec--C
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSR--TDHS-QLCH----RSG---------------------ISFFS--D   59 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr--~~~~-~~a~----~~g---------------------~~~~~--~   59 (275)
                      +||||+|+|+||+.+++.|.+. +.+|.. .|+  +.+. ....    ..|                     +.+..  +
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~d   83 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRN   83 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCC
Confidence            5999999999999999999876 456665 453  2221 1111    011                     01121  4


Q ss_pred             hHHH--hccCCCEEEEecCchhHHHHhhcCCCCCCCCCc--EEEeCCC
Q 023897           60 KRAF--LEADNDVILISTSILSLSEVLNSLPVHCLQRRT--LIADVLS  103 (275)
Q Consensus        60 ~~~~--~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~--iv~d~~s  103 (275)
                      ++++  ...++|+||.|+|.....+.....    +..|.  +++|..+
T Consensus        84 p~~l~w~~~~vDvV~eaTg~~~~~e~a~~~----l~aGak~VVIs~pa  127 (337)
T 3e5r_O           84 PDEIPWAEAGAEYVVESTGVFTDKEKAAAH----LKGGAKKVVISAPS  127 (337)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSHHHHTHH----HHTTCSEEEESSCC
T ss_pred             hHHccccccCCCEEEECCCchhhHHHHHHH----HHcCCCEEEEecCC
Confidence            5441  013789999999998777666655    33444  7777654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.99  E-value=0.001  Score=58.24  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cCh---HHHhccCCCEEEEecCchh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDK---RAFLEADNDVILISTSILS   79 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~---~~~~~~~aD~iilavp~~~   79 (275)
                      .++|.|+|+|.+|..+++.|.+.|+ |++.|++++ .+ ..+.|..+.    ++.   +++-++++|.++++++.+.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~  189 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS  189 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence            3589999999999999999999999 999999986 45 555666321    122   2221368899999999764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.95  E-value=0.0047  Score=54.83  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC----hhh----------hHHHHcC-ceEecChHHHhccCCCEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT----DHS----------QLCHRSG-ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~----~~~----------~~a~~~g-~~~~~~~~~~~~~~aD~i   71 (275)
                      .....||.|+|+|.+|..+|+.|...|. +|+++||+    ...          ..+.+.+ .....++.++ ++++|++
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~ea-v~~ADVl  267 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETA-LEGADFF  267 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHH-HTTCSEE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHH-HccCCEE
Confidence            3456799999999999999999999998 89999998    321          1223222 1224578886 4899998


Q ss_pred             EEecCchh-HHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           72 LISTSILS-LSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        72 ilavp~~~-~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      |=++.+.. .+++++..     .++.+|++++.-.
T Consensus       268 IG~Sap~l~t~emVk~M-----a~~pIIfalSNPt  297 (388)
T 1vl6_A          268 IGVSRGNILKPEWIKKM-----SRKPVIFALANPV  297 (388)
T ss_dssp             EECSCSSCSCHHHHTTS-----CSSCEEEECCSSS
T ss_pred             EEeCCCCccCHHHHHhc-----CCCCEEEEcCCCC
Confidence            88876543 36666664     4566999987643

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.95  E-value=0.0011  Score=58.07  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh----h-h---HHHHcCceEe-------cChHHHhcc--CCCE
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH----S-Q---LCHRSGISFF-------SDKRAFLEA--DNDV   70 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~----~-~---~a~~~g~~~~-------~~~~~~~~~--~aD~   70 (275)
                      |.+|+|.|.|+ |.+|+.++..|.+.|++|++.+|++.    . .   .....++...       .++.++ ++  ++|+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~   86 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKI-LKEHEIDI   86 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH-HHHTTCCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHH-HhhCCCCE
Confidence            44679999996 99999999999999999999999761    1 1   1123455321       123343 36  8999


Q ss_pred             EEEecCc
Q 023897           71 ILISTSI   77 (275)
Q Consensus        71 iilavp~   77 (275)
                      ||.+...
T Consensus        87 Vi~~a~~   93 (346)
T 3i6i_A           87 VVSTVGG   93 (346)
T ss_dssp             EEECCCG
T ss_pred             EEECCch
Confidence            9999876

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.91  E-value=0.0014  Score=53.28  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             eEEEEc-CChHHHHHHHHHH-HCCCeEEEEcCChh-hh-HH--HHcCceE-------ecChHHHhccCCCEEEEecCc
Q 023897           13 KIGIIG-FGPFGQFLAKTMI-KQGHILRATSRTDH-SQ-LC--HRSGISF-------FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~-~a--~~~g~~~-------~~~~~~~~~~~aD~iilavp~   77 (275)
                      +|.|.| .|.+|..+++.|. +.|++|++.+|++. .. ..  ...++..       ..++.++ ++++|+||.+...
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vv~~ag~   83 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQA-VTNAEVVFVGAME   83 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHH-HTTCSEEEESCCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHH-HcCCCEEEEcCCC
Confidence            499999 6999999999999 89999999999976 42 11  1222221       1123343 4788999988875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.90  E-value=0.0023  Score=55.11  Aligned_cols=65  Identities=23%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hh-H---HHHcCceEe-------cChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQ-L---CHRSGISFF-------SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~---a~~~g~~~~-------~~~~~~~~~~aD~iilavp~   77 (275)
                      ++|.|.| .|.+|+.+++.|.+.|++|++.+|++. .. .   ....|+...       .++.++ ++++|+||.+.+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVEL-MKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHH-HcCCCEEEECCch
Confidence            4899999 599999999999999999999999873 21 1   123455321       123443 4789999998875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.88  E-value=0.00095  Score=59.21  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=31.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |||.|||+|..|.++|..|+++|++|+++++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            799999999999999999999999999998864

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.87  E-value=0.0021  Score=56.04  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=46.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChh--h-h-HH--HHc-------CceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDH--S-Q-LC--HRS-------GISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~--~-~-~a--~~~-------g~~~~~~~~~~~~~~a   68 (275)
                      ..|||.|+|+ |.+|+.++..|...|+       +|.++|+++.  . . .+  ...       ++....+..++ ++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a-~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA-FKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH-TTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHH-hCCC
Confidence            3479999996 9999999999999886       8999998741  1 1 11  111       12333566665 4899


Q ss_pred             CEEEEec
Q 023897           69 DVILIST   75 (275)
Q Consensus        69 D~iilav   75 (275)
                      |+||.+.
T Consensus        82 D~Vih~A   88 (327)
T 1y7t_A           82 DYALLVG   88 (327)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9999874

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.85  E-value=0.0014  Score=58.16  Aligned_cols=88  Identities=18%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             CCeEEEEc-CChHHHHHHH-HHHHCCC---eEEEEcC-ChhhhH--HHHcCceEe--cChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIG-FGPFGQFLAK-TMIKQGH---ILRATSR-TDHSQL--CHRSGISFF--SDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~-~L~~~g~---~V~~~dr-~~~~~~--a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      |+||+|+| .|.+|+.+.+ .|.+.++   .++.... +.-...  .....+.+.  .++++ . .++|+||.|+|....
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~-~~~DvVf~a~g~~~s   78 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-L-KALDIIVTCQGGDYT   78 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-H-HTCSEEEECSCHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-h-cCCCEEEECCCchhH
Confidence            36999999 8999999999 5655543   4544433 321111  111223222  23454 3 689999999998887


Q ss_pred             HHHhhcCCCCCCCCCc--EEEeCCCC
Q 023897           81 SEVLNSLPVHCLQRRT--LIADVLSV  104 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~--iv~d~~s~  104 (275)
                      .+....+    +..|.  +++|.++.
T Consensus        79 ~~~a~~~----~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           79 NEIYPKL----RESGWQGYWIDAASS  100 (367)
T ss_dssp             HHHHHHH----HHTTCCCEEEECSST
T ss_pred             HHHHHHH----HHCCCCEEEEcCChh
Confidence            7777776    23343  89998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.84  E-value=0.0012  Score=56.03  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------ecChHHHhccC-CCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------FSDKRAFLEAD-NDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~-aD~iilavp~   77 (275)
                      ++|||.|.|+|.+|+.++..|.+.|++|++.+|++...   ..++..       ..++.++ ++. +|+||-+...
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~-~~~~~d~vih~a~~   73 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASI-VHLRPEILVYCVAA   73 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTG-GGGCCSEEEECHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHh-hcCCCCEEEEeCCC
Confidence            46799999999999999999999999999999986421   112211       1122332 244 8999988653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.80  E-value=0.00089  Score=54.50  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-----Ee---cChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-----FF---SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-----~~---~~~~~~~~~~aD~iilavp~   77 (275)
                      |||.|.| .|.+|+.+++.|.+.|++|++.+|++...... .++.     ..   .++.++ +++.|+||.+...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~-~~~~d~vi~~ag~   73 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQ-LHGMDAIINVSGS   73 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTT-TTTCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHH-HcCCCEEEECCcC
Confidence            6899999 79999999999999999999999997421110 2221     11   122333 4678999988764

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.76  E-value=0.008  Score=52.08  Aligned_cols=64  Identities=22%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcC--Chh-hh-----HHH---Hc--CceEe--c-ChHHHhccCCCEEE
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSR--TDH-SQ-----LCH---RS--GISFF--S-DKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr--~~~-~~-----~a~---~~--g~~~~--~-~~~~~~~~~aD~ii   72 (275)
                      |||+|+|+ |.+|++++..|...|+  ++.++|+  ++. .+     ...   ..  .+.+.  + ++.++ ++++|+||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~a-l~gaD~Vi   79 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRI-IDESDVVI   79 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGG-GTTCSEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHH-hCCCCEEE
Confidence            69999998 9999999999998875  6889998  643 11     111   11  22332  2 24554 48999999


Q ss_pred             EecC
Q 023897           73 ISTS   76 (275)
Q Consensus        73 lavp   76 (275)
                      ++.-
T Consensus        80 ~~Ag   83 (313)
T 1hye_A           80 ITSG   83 (313)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9853

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.74  E-value=0.0013  Score=57.90  Aligned_cols=87  Identities=18%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEc-CChh-hhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchhHH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATS-RTDH-SQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~d-r~~~-~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      .+||+||| .|..|.-|.+.|.+..|   ++.... ++.. .... -.|.  .+. .+.+.  .+++|++|.|+|.....
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~~~~~~~~~~~~~--~~~~Dvvf~a~~~~~s~   77 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRGQEIEVEDAETAD--PSGLDIALFSAGSAMSK   77 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETTEEEEEEETTTSC--CTTCSEEEECSCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecCCceEEEeCCHHH--hccCCEEEECCChHHHH
Confidence            36899999 79999999999998754   444443 3221 1111 1121  221 12222  36899999999998888


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      +....+    +..|..++|.++-
T Consensus        78 ~~a~~~----~~~G~~vID~Sa~   96 (344)
T 3tz6_A           78 VQAPRF----AAAGVTVIDNSSA   96 (344)
T ss_dssp             HHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHH----HhCCCEEEECCCc
Confidence            887776    4567899998863

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.73  E-value=0.001  Score=54.96  Aligned_cols=68  Identities=7%  Similarity=0.048  Sum_probs=47.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEcCChhh-hHHHHcCceE-------ecChHHHhccCCCEEEEecCch
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRATSRTDHS-QLCHRSGISF-------FSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~dr~~~~-~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp~~   78 (275)
                      .+++|.|.| .|.+|+.+++.|.+.| ++|++++|+++. ......++..       ..+++++ ++++|+||.+....
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~vv~~a~~~   99 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQA-MQGQDIVYANLTGE   99 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHH-HTTCSEEEEECCST
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHH-hcCCCEEEEcCCCC
Confidence            456799999 6999999999999999 899999999742 2111122221       1123343 47899999887653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.70  E-value=0.0035  Score=53.53  Aligned_cols=67  Identities=24%  Similarity=0.286  Sum_probs=47.8

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh------h-h---HHHHcCceEe----c---ChHHHhccCCCEEE
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH------S-Q---LCHRSGISFF----S---DKRAFLEADNDVIL   72 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~------~-~---~a~~~g~~~~----~---~~~~~~~~~aD~ii   72 (275)
                      +++|.|.|+ |.+|+++++.|.+.|++|++.+|++.      . .   .....|+...    +   ++.++ ++++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~-~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEA-VKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHH-HHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHH-HcCCCEEE
Confidence            578999995 99999999999999999999999742      1 1   1122455321    1   23343 46899999


Q ss_pred             EecCch
Q 023897           73 ISTSIL   78 (275)
Q Consensus        73 lavp~~   78 (275)
                      .+....
T Consensus        83 ~~a~~~   88 (308)
T 1qyc_A           83 STVGSL   88 (308)
T ss_dssp             ECCCGG
T ss_pred             ECCcch
Confidence            988753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.69  E-value=0.0017  Score=53.10  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||+|.-|.+.|..|+++|++|+++++++
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            369999999999999999999999999999864

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.67  E-value=0.0024  Score=58.29  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CC---eEEEEcCChh-hhHHHHcCceEe-----cC-----hHHHhccCCCEEEEec
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GH---ILRATSRTDH-SQLCHRSGISFF-----SD-----KRAFLEADNDVILIST   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~---~V~~~dr~~~-~~~a~~~g~~~~-----~~-----~~~~~~~~aD~iilav   75 (275)
                      .+||.|||+|.||+.++..+.++ ++   +|++.|++.. .......|+...     .+     +.++ +++.|+||-+.
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aL-l~~~DvVIN~s   91 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST-LEENDFLIDVS   91 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGG-CCTTCEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHH-hcCCCEEEECC
Confidence            47899999999999999999886 44   7899988764 333334454321     22     2233 35569999999


Q ss_pred             CchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           76 SILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ++.....+++..    +..|.-.+|++.
T Consensus        92 ~~~~~l~Im~ac----leaGv~YlDTa~  115 (480)
T 2ph5_A           92 IGISSLALIILC----NQKGALYINAAT  115 (480)
T ss_dssp             SSSCHHHHHHHH----HHHTCEEEESSC
T ss_pred             ccccCHHHHHHH----HHcCCCEEECCC
Confidence            888777777765    445778888773

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.64  E-value=0.002  Score=57.61  Aligned_cols=37  Identities=19%  Similarity=0.094  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .++.++|.|||+|..|.++|..|++.|++|+++++++
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3456789999999999999999999999999999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.63  E-value=0.0062  Score=50.12  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=46.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHC--CCeEEEEcCChhhhHHHHcCceE-------ecChHHHhccCCCEEEEecC
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQ--GHILRATSRTDHSQLCHRSGISF-------FSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~--g~~V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp   76 (275)
                      +.+++|.|.| .|.+|+.+++.|.+.  |++|++.+|++........++..       ..++.++ +++.|+||.+..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vi~~a~   78 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPA-FQGIDALVILTS   78 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHH-HTTCSEEEECCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHH-HcCCCEEEEecc
Confidence            4568999999 699999999999999  89999999987422111222211       1123343 468899998764

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.62  E-value=0.002  Score=56.22  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-------CCeEE-EEcCChhh-----------hHHHHcC-ceE-ecChHHHhc-cC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-------GHILR-ATSRTDHS-----------QLCHRSG-ISF-FSDKRAFLE-AD   67 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-------g~~V~-~~dr~~~~-----------~~a~~~g-~~~-~~~~~~~~~-~~   67 (275)
                      ++.||+|||+|.||+.+++.|.+.       +.+|+ ++|+++..           ....+.| +.. ..+..+.+. .+
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~   82 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEA   82 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSC
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCC
Confidence            457899999999999999999874       34555 35766421           1122233 210 114455321 35


Q ss_pred             CCEEEEecCch
Q 023897           68 NDVILISTSIL   78 (275)
Q Consensus        68 aD~iilavp~~   78 (275)
                      .|+|+.|+|+.
T Consensus        83 iDvVVe~T~~~   93 (325)
T 3ing_A           83 ADLLVDCTPAS   93 (325)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCc
Confidence            89999999975

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.59  E-value=0.0054  Score=52.72  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh-h-----hh-H---HHHcCceEe----c---ChHHHhccCCCEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD-H-----SQ-L---CHRSGISFF----S---DKRAFLEADNDVI   71 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~-~-----~~-~---a~~~g~~~~----~---~~~~~~~~~aD~i   71 (275)
                      ++|+|.|.| .|.+|+++++.|.+.|++|++.+|++ .     .. .   ....++...    .   ++.++ ++++|+|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a-~~~~d~v   81 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSV-LKQVDIV   81 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTCSEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHH-HcCCCEE
Confidence            357899999 59999999999999999999999985 1     11 1   123455321    1   23444 4789999


Q ss_pred             EEecCc
Q 023897           72 LISTSI   77 (275)
Q Consensus        72 ilavp~   77 (275)
                      |.+...
T Consensus        82 i~~a~~   87 (321)
T 3c1o_A           82 ISALPF   87 (321)
T ss_dssp             EECCCG
T ss_pred             EECCCc
Confidence            998775

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=96.59  E-value=0.0056  Score=56.46  Aligned_cols=63  Identities=17%  Similarity=0.302  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEec--ChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFS--DKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~--~~~~~~~~~aD~iila   74 (275)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|....  .....+.|+.+..  +.+.  +.++|+||+.
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~--~~~a~~vv~s   85 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPEN--VRDASVVVVS   85 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGG--GTTCSEEEEC
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCHHH--cCCCCEEEEC
Confidence            4568999999999998 99999999999999998763  2334456876542  2333  3689999986

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.58  E-value=0.0078  Score=53.38  Aligned_cols=65  Identities=14%  Similarity=0.101  Sum_probs=43.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC--e---EEEEc--CChh--hh--HHH--HcC-------ceEecChHHHhccCC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH--I---LRATS--RTDH--SQ--LCH--RSG-------ISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~--~---V~~~d--r~~~--~~--~a~--~~g-------~~~~~~~~~~~~~~a   68 (275)
                      ..+||+|+| +|.+|.+++..|...+.  +   |.+++  .+..  ..  .+.  +.+       +.+.++..+. ++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~-~~da  109 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEV-FEDV  109 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH-TTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHH-hCCC
Confidence            457999999 79999999999998764  2   66654  4331  11  111  111       2345555554 4899


Q ss_pred             CEEEEec
Q 023897           69 DVILIST   75 (275)
Q Consensus        69 D~iilav   75 (275)
                      |+||++-
T Consensus       110 DvVVita  116 (375)
T 7mdh_A          110 DWALLIG  116 (375)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999974

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.56  E-value=0.0064  Score=52.59  Aligned_cols=66  Identities=18%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----c---ChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----S---DKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~---~~~~~~~~~aD~iilavp   76 (275)
                      .+|+|.|.| .|.+|+.+++.|.+.|++|++.+|++. .......++...    .   ++.++ ++++|+||-+..
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih~a~   86 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA-LRGLDGVIFSAG   86 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHH-TTTCSEEEEC--
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHH-HcCCCEEEECCc
Confidence            457999999 599999999999999999999999874 221122244221    1   23343 478999998865

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.56  E-value=0.005  Score=52.51  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=47.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCCh-------hhh-H---HHHcCceEe----cC---hHHHhccCCCEE
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTD-------HSQ-L---CHRSGISFF----SD---KRAFLEADNDVI   71 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~-------~~~-~---a~~~g~~~~----~~---~~~~~~~~aD~i   71 (275)
                      +++|.|.|+ |.+|+.+++.|.+.|++|++.+|++       ... .   ....|+...    .+   +.++ ++++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~-~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKA-IKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHH-HhCCCEE
Confidence            578999995 9999999999999999999999986       211 1   123455321    12   3343 4789999


Q ss_pred             EEecCc
Q 023897           72 LISTSI   77 (275)
Q Consensus        72 ilavp~   77 (275)
                      |.+.+.
T Consensus        81 i~~a~~   86 (307)
T 2gas_A           81 ICAAGR   86 (307)
T ss_dssp             EECSSS
T ss_pred             EECCcc
Confidence            998874

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=96.53  E-value=0.005  Score=56.50  Aligned_cols=63  Identities=19%  Similarity=0.367  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEe--cChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFF--SDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~--~~~~~~~~~~aD~iila   74 (275)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|....  .+...+.|+.+.  .+.+.  +.++|+||+.
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~--~~~a~~vv~s   84 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEH--IEGASVVVVS   84 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGG--GTTCSEEEEC
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCHHH--cCCCCEEEEC
Confidence            4568999999999998 99999999999999998763  233455687654  23332  3689999986

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.52  E-value=0.0028  Score=53.65  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=47.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHC-CCeEEEEcCChhh-hHHHHcCceEe-------cChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQ-GHILRATSRTDHS-QLCHRSGISFF-------SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~-g~~V~~~dr~~~~-~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp~   77 (275)
                      |||.|.| .|.+|+.+++.|.+. |++|++.+|++.. ......++...       .++.++ ++++|+||.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~-~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEA-FKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHH-TTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHH-HhCCCEEEEeCCC
Confidence            6899999 699999999999998 9999999999853 22222344321       123443 4789999998764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.51  E-value=0.0068  Score=51.79  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=47.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-----h-hH---HHHcCceEe----c---ChHHHhccCCCEEEE
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-----S-QL---CHRSGISFF----S---DKRAFLEADNDVILI   73 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-----~-~~---a~~~g~~~~----~---~~~~~~~~~aD~iil   73 (275)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|++.     . ..   ....++...    .   ++.++ ++++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~-~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA-LKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH-HTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHH-HhCCCEEEE
Confidence            57899999 599999999999999999999999841     1 11   112355321    2   23443 478999999


Q ss_pred             ecCc
Q 023897           74 STSI   77 (275)
Q Consensus        74 avp~   77 (275)
                      +...
T Consensus        83 ~a~~   86 (313)
T 1qyd_A           83 ALAG   86 (313)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.50  E-value=0.0043  Score=53.19  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE------ecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF------FSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~------~~~~~~~~~~~aD~iilavp   76 (275)
                      +|+|.|.| .|.+|+.++..|.+.|++|++.+|++.... .+ ++..      ..++.++ ++++|+||-+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~-~~~~~~~Dl~~~~~~~~-~~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN-DYEYRVSDYTLEDLINQ-LNDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------CCEEEECCCCHHHHHHH-TTTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC-ceEEEEccccHHHHHHh-hcCCCEEEEccc
Confidence            47999999 699999999999999999999999853221 11 3321      2334454 478999998754

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.48  E-value=0.0053  Score=54.60  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCCeEEEEc-CChHHHHHHH-HHHHCCC---eEEEE-cCChhhh--HHHHcCceE--ecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIG-FGPFGQFLAK-TMIKQGH---ILRAT-SRTDHSQ--LCHRSGISF--FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~-~L~~~g~---~V~~~-dr~~~~~--~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      .++||+||| .|..|+-|.+ .|.++.+   ++..+ .++.-..  ........+  .++.++ + +++|++|.|+|...
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~-~-~~vDvvf~a~~~~~   80 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDD-L-KKCDVIITCQGGDY   80 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHH-H-HTCSEEEECSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChhH-h-cCCCEEEECCChHH
Confidence            458999999 6999999999 7777653   55544 4432111  111111222  223444 2 78999999999988


Q ss_pred             HHHHhhcCCCCCCCCC--cEEEeCCC
Q 023897           80 LSEVLNSLPVHCLQRR--TLIADVLS  103 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~--~iv~d~~s  103 (275)
                      ..+....+    +..|  .+|+|.++
T Consensus        81 s~~~~~~~----~~~G~k~~VID~ss  102 (377)
T 3uw3_A           81 TNDVFPKL----RAAGWNGYWIDAAS  102 (377)
T ss_dssp             HHHHHHHH----HHTTCCSEEEECSS
T ss_pred             HHHHHHHH----HHCCCCEEEEeCCc
Confidence            88877776    3345  48999876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.47  E-value=0.0091  Score=52.26  Aligned_cols=88  Identities=24%  Similarity=0.376  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce-EecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS-FFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|.. +..+.+. +.+..|+||-++... .+...++.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~-~~~~~D~vid~~g~~~~~~~~~~~  254 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ-CKEELDFIISTIPTHYDLKDYLKL  254 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGG-CCSCEEEEEECCCSCCCHHHHHTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHH-HhcCCCEEEECCCcHHHHHHHHHH
Confidence            356899999999999999999999999999998884 5677888873 2244444 234789999999877 55555554


Q ss_pred             CCCCCCCCCcEEEeCCC
Q 023897           87 LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l~~~~l~~~~iv~d~~s  103 (275)
                      +     +++..++.++.
T Consensus       255 l-----~~~G~iv~~G~  266 (348)
T 3two_A          255 L-----TYNGDLALVGL  266 (348)
T ss_dssp             E-----EEEEEEEECCC
T ss_pred             H-----hcCCEEEEECC
Confidence            3     44455555554

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.46  E-value=0.0089  Score=55.56  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh---hhHHHHcCceEe--cChHHHhccCCCEEEEe--cCch
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH---SQLCHRSGISFF--SDKRAFLEADNDVILIS--TSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~---~~~a~~~g~~~~--~~~~~~~~~~aD~iila--vp~~   78 (275)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|.+..   .+...+.|+.+.  .+.+. +..++|+||++  +|++
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~-~~~~~d~vV~Spgi~~~   93 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAH-LQPAPDLVVVGNAMKRG   93 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGG-GCSCCSEEEECTTCCTT
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHH-cCCCCCEEEECCCcCCC
Confidence            4579999999999997 79999999999999998752   234456688654  23344 23578999986  5553

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.41  E-value=0.0061  Score=51.89  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCC-CeEEEEcCChhhh---HHHHcCceEe----cC---hHHHhccCCCEEEEecCc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQG-HILRATSRTDHSQ---LCHRSGISFF----SD---KRAFLEADNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g-~~V~~~dr~~~~~---~a~~~g~~~~----~~---~~~~~~~~aD~iilavp~   77 (275)
                      +++|.|.|+ |.+|+.+++.|.+.| ++|++.+|++...   .....++...    .+   +.++ ++++|.||.+...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELA-LNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHH-HhcCCEEEEeCCC
Confidence            578999995 999999999999988 9999999987431   1223455321    12   3343 4789999998763

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.40  E-value=0.0035  Score=55.44  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+..++|.|||+|..|.++|..|++.|++|+++++++
T Consensus         8 ~m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~   44 (379)
T 3alj_A            8 PGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSS   44 (379)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            3445789999999999999999999999999999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.40  E-value=0.007  Score=53.00  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-c----ChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-S----DKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+.+.|.... +    +..+.+.     ...|++|-++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            45689999999999999999999999 9999999985 466667776321 1    2222111     157899998886


Q ss_pred             -hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 -LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 -~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       ..+...++.+     +++..++.+++
T Consensus       247 ~~~~~~~~~~l-----~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKALEQGLQAV-----TPAGRVSLLGL  268 (348)
T ss_dssp             HHHHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHHH-----hcCCEEEEEcc
Confidence             4444554443     33445555554

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.38  E-value=0.0061  Score=54.04  Aligned_cols=86  Identities=14%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             CeEEEEc-CChHHHHHHH-HHHHCCC---eEEEE-cCChhhh--HHHHcCceE--ecChHHHhccCCCEEEEecCchhHH
Q 023897           12 LKIGIIG-FGPFGQFLAK-TMIKQGH---ILRAT-SRTDHSQ--LCHRSGISF--FSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~-~L~~~g~---~V~~~-dr~~~~~--~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      |||+||| .|..|+-|.+ .|.++.+   ++... .++.-..  ........+  ..+.++  .+++|++|.|+|.....
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~--~~~~Dvvf~a~~~~~s~   78 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIES--LKQLDAVITCQGGSYTE   78 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHH--HTTCSEEEECSCHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChhH--hccCCEEEECCChHHHH
Confidence            6899999 6999999999 7777653   55543 4442111  111111222  123444  27899999999998877


Q ss_pred             HHhhcCCCCCCCCC--cEEEeCCC
Q 023897           82 EVLNSLPVHCLQRR--TLIADVLS  103 (275)
Q Consensus        82 ~v~~~l~~~~l~~~--~iv~d~~s  103 (275)
                      +....+    +..|  .+|+|.++
T Consensus        79 ~~~~~~----~~~G~k~~VID~ss   98 (370)
T 3pzr_A           79 KVYPAL----RQAGWKGYWIDAAS   98 (370)
T ss_dssp             HHHHHH----HHTTCCCEEEECSS
T ss_pred             HHHHHH----HHCCCCEEEEeCCc
Confidence            777776    2334  48999876

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.36  E-value=0.0062  Score=45.88  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeEEEE-cCChhhhHHHHcCceEec--ChHHHhc-cCCCEEEEecCchh---HH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRAT-SRTDHSQLCHRSGISFFS--DKRAFLE-ADNDVILISTSILS---LS   81 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~-dr~~~~~~a~~~g~~~~~--~~~~~~~-~~aD~iilavp~~~---~~   81 (275)
                      ...++.|||+|..|..++..+.+. |++|.++ |.++......-.|+.+..  ++.+.+. ...|.|++|+|...   ..
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~   82 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQKK   82 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHH
Confidence            456899999999999999999876 7888874 655432111113444433  3333211 25788999998532   34


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +++..+
T Consensus        83 ~i~~~l   88 (141)
T 3nkl_A           83 VIIESL   88 (141)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.33  E-value=0.0043  Score=55.25  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..++|.|||+|..|.++|..|++.|++|+++++++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            344689999999999999999999999999999875

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=96.32  E-value=0.0068  Score=52.98  Aligned_cols=86  Identities=17%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCe---EEEE-cCChh-hhHHH-HcCceEec-ChHHHhccCCCEEEEecCchhHHHH
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHI---LRAT-SRTDH-SQLCH-RSGISFFS-DKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~---V~~~-dr~~~-~~~a~-~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      |||+|+| .|.+|+.+.+.|.+.+++   +... ++... ..... ...+.+.. ++..  . ++|+||.|+|.....+.
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~--~-~~DvV~~a~g~~~s~~~   77 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGP--L-PVDLVLASAGGGISRAK   77 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSC--C-CCSEEEECSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhh--c-CCCEEEECCCccchHHH
Confidence            6899999 899999999999876663   2222 21111 00000 01122211 2222  2 78999999998877777


Q ss_pred             hhcCCCCCCCCCcEEEeCCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ...+    +..|..++|.++-
T Consensus        78 a~~~----~~~G~~vId~s~~   94 (331)
T 2yv3_A           78 ALVW----AEGGALVVDNSSA   94 (331)
T ss_dssp             HHHH----HHTTCEEEECSSS
T ss_pred             HHHH----HHCCCEEEECCCc
Confidence            7765    4567899998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.32  E-value=0.0041  Score=53.03  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |||.|.|+ |.+|+.+++.|.++||+|++..|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            89999995 99999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.26  E-value=0.0075  Score=51.20  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ....++|.|||.|.+|...+..|.+.|++|++++++.
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3467899999999999999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.25  E-value=0.0037  Score=58.61  Aligned_cols=68  Identities=19%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc----eEecChHHHhccCCCEEEEecCchhH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI----SFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~----~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      ++|.|+|+|.+|..+|+.|.+.|++|++.|.+++. +... .-+    +-...++++-++++|.++++++.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~  421 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VVVYGDATVGQTLRQAGIDRASGIIVTTNDDST  421 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CEEEeCCCCHHHHHhcCccccCEEEEECCCchH
Confidence            78999999999999999999999999999999853 2211 100    11112333335799999999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.23  E-value=0.014  Score=48.89  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            34689999999999999999999997 888988764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.23  E-value=0.032  Score=49.86  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-c----ChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-S----DKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|.... +    +..+.+.     ...|++|-|+..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            45689999999999999999999998 8999999885 567777776321 1    1111111     147888888776


Q ss_pred             h
Q 023897           78 L   78 (275)
Q Consensus        78 ~   78 (275)
                      .
T Consensus       293 ~  293 (404)
T 3ip1_A          293 P  293 (404)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.22  E-value=0.0075  Score=52.05  Aligned_cols=43  Identities=14%  Similarity=0.278  Sum_probs=37.3

Q ss_pred             cCCCCCCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            3 VSSPSSSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         3 ~~~~~~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++.+..+..++|.|.|+ |.+|+.+++.|.+.|++|++.+|++.
T Consensus         3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   46 (342)
T 1y1p_A            3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            34455677889999995 99999999999999999999999874

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.20  E-value=0.024  Score=51.26  Aligned_cols=112  Identities=11%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC---eEEEEc----CC----hhhh---H-------HHHcCce-EecChHHHhcc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH---ILRATS----RT----DHSQ---L-------CHRSGIS-FFSDKRAFLEA   66 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~---~V~~~d----r~----~~~~---~-------a~~~g~~-~~~~~~~~~~~   66 (275)
                      ....||.|+|+|..|.+++..|.+.|.   +|+++|    |+    ....   .       +...+.. ...++.++ +.
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~-l~  262 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA-LK  262 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH-HT
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH-hc
Confidence            455789999999999999999999997   899999    87    2211   1       1111111 13456675 48


Q ss_pred             CCCEEEEecCc--hhH-HHHhhcCCCCCCCCCcEEEeCCCCC-hhHHHHHHhhCCCCCcee-ecCCCC
Q 023897           67 DNDVILISTSI--LSL-SEVLNSLPVHCLQRRTLIADVLSVK-EYPRNVLLQVLPEEMDVL-CTHPMF  129 (275)
Q Consensus        67 ~aD~iilavp~--~~~-~~v~~~l~~~~l~~~~iv~d~~s~k-~~~~~~l~~~l~~~~~~v-~~hP~~  129 (275)
                      ++|++|-++|.  ..+ .+.++.     +.++.+++|+..-. ....+...+.   +..++ .+-.|+
T Consensus       263 ~aDVlInaT~~~~G~~~~e~v~~-----m~~~~iVfDLynP~~t~~~~~A~~~---G~~ivatG~~ml  322 (439)
T 2dvm_A          263 DADVLISFTRPGPGVIKPQWIEK-----MNEDAIVFPLANPVPEILPEEAKKA---GARIVATGRSDY  322 (439)
T ss_dssp             TCSEEEECSCCCSSSSCHHHHTT-----SCTTCEEEECCSSSCSSCHHHHHHH---TCSEECBSCSSS
T ss_pred             cCCEEEEcCCCccCCCChHHHHh-----cCCCCEEEECCCCCCcchHHHHHHc---CCeEEcCCCchh
Confidence            89999999997  433 233332     55677999994322 2234444443   34555 444444

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.18  E-value=0.0061  Score=54.26  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..++|.|||+|..|.++|..|++.|++|+++++++
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   38 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   38 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            345789999999999999999999999999999865

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.17  E-value=0.055  Score=47.74  Aligned_cols=77  Identities=12%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-------cChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-------SDKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-------~~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...       .+..+.+.    ...|+||-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            34689999999999999999999998 8999999885 567777786321       12222111    14788888887


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. .+...++.
T Consensus       275 ~~~~~~~~~~~  285 (376)
T 1e3i_A          275 TAQTLKAAVDC  285 (376)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            53 33444443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.17  E-value=0.0084  Score=49.20  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCceE-------ecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGISF-------FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp~   77 (275)
                      ..|+|.|.| .|.+|+.+++.|.+.|+  +|++.+|++. .......++..       ..+.+++ +++.|+||.+...
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vi~~ag~   94 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASA-FQGHDVGFCCLGT   94 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGG-GSSCSEEEECCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHH-hcCCCEEEECCCc
Confidence            457899999 69999999999999999  9999999874 22111112211       1233343 4678999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.16  E-value=0.017  Score=50.95  Aligned_cols=78  Identities=17%  Similarity=0.092  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c----ChHHHhc-----cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S----DKRAFLE-----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~-----~~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|+... +    +..+.+.     ...|+||-|+...
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~  268 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGA  268 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChH
Confidence            456899999999999999999999999999999974 566676676321 1    1111110     1467777777655


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      .+...++.+
T Consensus       269 ~~~~~~~~l  277 (363)
T 3uog_A          269 GLGQSLKAV  277 (363)
T ss_dssp             CHHHHHHHE
T ss_pred             HHHHHHHHh
Confidence            555544443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.15  E-value=0.045  Score=48.24  Aligned_cols=77  Identities=10%  Similarity=0.065  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-------cChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-------SDKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-------~~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...       .+..+.+.    ...|+||-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            34689999999999999998888898 8999998885 567777887321       12222111    14788888887


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. .+...++.
T Consensus       271 ~~~~~~~~~~~  281 (373)
T 1p0f_A          271 RIETMMNALQS  281 (373)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            53 33444433

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.11  E-value=0.0052  Score=53.85  Aligned_cols=29  Identities=21%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC---CeEEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG---HILRAT   40 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g---~~V~~~   40 (275)
                      +||||+|+|++|+.+.+.|.+.+   ++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            59999999999999999998862   566543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.10  E-value=0.034  Score=49.20  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEec-------ChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFS-------DKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~-------~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...-       +..+.+.    ...|++|-|+.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            45689999999999999999988898 8999998884 5677788874221       1222110    14688888877


Q ss_pred             ch
Q 023897           77 IL   78 (275)
Q Consensus        77 ~~   78 (275)
                      ..
T Consensus       273 ~~  274 (378)
T 3uko_A          273 NV  274 (378)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.066  Score=47.19  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEec-------ChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFS-------DKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~-------~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...-       +..+.+.    ...|++|-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            34689999999999999999999998 8999999885 5677777863211       2222111    14788888887


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. .+...++.
T Consensus       272 ~~~~~~~~~~~  282 (374)
T 1cdo_A          272 NVGVMRNALES  282 (374)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            53 33444443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=96.09  E-value=0.018  Score=49.35  Aligned_cols=78  Identities=9%  Similarity=0.137  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....+++.||| ...+|..+|..|.+.+..|+++....             .++.+. .++||+||.|+.-..+   +.
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T-------------~dl~~~-~~~ADIvV~A~G~p~~---i~  237 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT-------------QNLPEL-VKQADIIVGAVGKAEL---IQ  237 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHH-HHTCSEEEECSCSTTC---BC
T ss_pred             CCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC-------------CCHHHH-hhcCCeEEeccCCCCc---cc
Confidence            456778999999 67889999999999999999886432             355564 4899999999886532   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|.+++|++..
T Consensus       238 ~-d~--vk~GavVIDVGin  253 (303)
T 4b4u_A          238 K-DW--IKQGAVVVDAGFH  253 (303)
T ss_dssp             G-GG--SCTTCEEEECCCB
T ss_pred             c-cc--ccCCCEEEEecee
Confidence            1 23  7899999999853

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.07  E-value=0.0062  Score=56.43  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +|||.|.| +|.+|+.++..|.+.|++|++.+|++.........  ......++ +.++|+||-+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d--~~~~~~~~-l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWD--PLNPASDL-LDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECC--TTSCCTTT-TTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeec--ccchhHHh-cCCCCEEEECCC
Confidence            78999999 69999999999999999999999987421110111  11222343 478999998754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.04  E-value=0.017  Score=50.99  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEe----c---ChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFF----S---DKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~----~---~~~~~~~~~aD~iilavp   76 (275)
                      .+|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++.. ......++...    .   ++.++ ++++|+||-+..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~d~Vih~A~  102 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHVFNLAA  102 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEEEECCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHH-hCCCCEEEECce
Confidence            5679999995 999999999999999999999998632 11112233211    1   23343 478999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.04  E-value=0.0084  Score=52.51  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ....|.|||+|.+|.+.|..|++.|++|+++++..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            34689999999999999999999999999999864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.01  E-value=0.054  Score=47.74  Aligned_cols=77  Identities=12%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEec-------ChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFS-------DKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~-------~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...-       +..+.+.    ...|+||-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            34689999999999999999999998 8999999885 5667777763211       1222111    14677777776


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. .+...++.
T Consensus       271 ~~~~~~~~~~~  281 (374)
T 2jhf_A          271 RLDTMVTALSC  281 (374)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            53 33444443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.99  E-value=0.053  Score=47.37  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e--c---ChHHHh---c-----cCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F--S---DKRAFL---E-----ADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~--~---~~~~~~---~-----~~aD~iila   74 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|... .  .   +..+.+   .     ...|++|-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            346899999999999999999999999999999885 56677777631 1  1   111111   1     257999999


Q ss_pred             cCch-hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           75 TSIL-SLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        75 vp~~-~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      +... .+...++.+     +++..++.++
T Consensus       248 ~g~~~~~~~~~~~l-----~~~G~iv~~G  271 (352)
T 1e3j_A          248 SGNEKCITIGINIT-----RTGGTLMLVG  271 (352)
T ss_dssp             SCCHHHHHHHHHHS-----CTTCEEEECS
T ss_pred             CCCHHHHHHHHHHH-----hcCCEEEEEe
Confidence            8765 344444443     3344444444

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.98  E-value=0.0076  Score=52.71  Aligned_cols=89  Identities=21%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEEE-cCC-hhh-hHHHH----c-----------------C--ceEe--cChH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRAT-SRT-DHS-QLCHR----S-----------------G--ISFF--SDKR   61 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~-dr~-~~~-~~a~~----~-----------------g--~~~~--~~~~   61 (275)
                      ++||||+|+|++|+-+.+.|.+. ..+|... ++. ++. ....+    .                 |  +.+.  .+++
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   80 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE   80 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence            36999999999999999999876 3566544 442 111 11110    0                 1  1222  1343


Q ss_pred             HHhc--cCCCEEEEecCchhHHHHhhcCCCCCCCCCc--EEEeCCC
Q 023897           62 AFLE--ADNDVILISTSILSLSEVLNSLPVHCLQRRT--LIADVLS  103 (275)
Q Consensus        62 ~~~~--~~aD~iilavp~~~~~~v~~~l~~~~l~~~~--iv~d~~s  103 (275)
                      +.-.  .++|+||.|+|.....+.....    +..|.  +|+|..+
T Consensus        81 ~i~w~~~~vDvV~~atg~~~s~e~a~~~----l~~Gak~vVId~pa  122 (334)
T 3cmc_O           81 NLAWGEIGVDIVVESTGRFTKREDAAKH----LEAGAKKVIISAPA  122 (334)
T ss_dssp             GCCTGGGTCCEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             hcCcccCccCEEEECCCchhhHHHHHHH----HHCCCCEEEEeCCC
Confidence            3100  2789999999987666666554    33455  8888654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.98  E-value=0.012  Score=51.63  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=46.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhh--H-HHH-cCceE-ec----C---hHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQ--L-CHR-SGISF-FS----D---KRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~--~-a~~-~g~~~-~~----~---~~~~~~~~aD~iilavp   76 (275)
                      ..|+|.|.| .|.+|+.+++.|.+.|++|++.+|++...  . ... .++.. ..    +   +.++ ++++|.||.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~-~~~~d~Vi~~a~   82 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTL-FEGAHLAFINTT   82 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHH-HTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHH-HhcCCEEEEcCC
Confidence            357899999 59999999999999999999999987421  1 111 13321 12    2   3343 478999997764


Q ss_pred             c
Q 023897           77 I   77 (275)
Q Consensus        77 ~   77 (275)
                      .
T Consensus        83 ~   83 (352)
T 1xgk_A           83 S   83 (352)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.92  E-value=0.059  Score=47.45  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-------cChHHHhc----cCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-------SDKRAFLE----ADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-------~~~~~~~~----~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...       .+..+.+.    ...|++|-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            34689999999999999999888898 8999999885 566777776321       11222111    14688888887


Q ss_pred             ch-hHHHHhhc
Q 023897           77 IL-SLSEVLNS   86 (275)
Q Consensus        77 ~~-~~~~v~~~   86 (275)
                      .. .+...++.
T Consensus       270 ~~~~~~~~~~~  280 (373)
T 2fzw_A          270 NVKVMRAALEA  280 (373)
T ss_dssp             CHHHHHHHHHT
T ss_pred             cHHHHHHHHHh
Confidence            53 33444433

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.90  E-value=0.0085  Score=51.20  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++.
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            34689999995 99999999999999999999999764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.87  E-value=0.025  Score=45.00  Aligned_cols=45  Identities=18%  Similarity=0.198  Sum_probs=36.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ..++|.|+| .|.+|.++++.++..|.+|++.+++++ .+.+.+.|.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~   84 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   84 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence            456899999 699999999999999999999999875 344555554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.86  E-value=0.091  Score=45.98  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceE-e-cC---hHH---Hhc----cCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISF-F-SD---KRA---FLE----ADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~-~-~~---~~~---~~~----~~aD~iilav   75 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|... . .+   .++   .+.    ...|+||-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            34689999999999999999888998 8999999885 56777788731 1 11   111   111    2589999998


Q ss_pred             Cch-hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           76 SIL-SLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        76 p~~-~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ... .+...++-+     +++..++.++
T Consensus       251 g~~~~~~~~~~~l-----~~~G~iv~~G  273 (356)
T 1pl8_A          251 GAEASIQAGIYAT-----RSGGTLVLVG  273 (356)
T ss_dssp             CCHHHHHHHHHHS-----CTTCEEEECS
T ss_pred             CChHHHHHHHHHh-----cCCCEEEEEe
Confidence            765 344444443     3444444444

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.86  E-value=0.026  Score=49.21  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c----ChHHHhc---cCCCEEEEecCc-hh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S----DKRAFLE---ADNDVILISTSI-LS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~---~~aD~iilavp~-~~   79 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+.+.|.... +    +..+.+.   ...|++|-++.. ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            356899999999999999999999999999999985 566667776321 1    2211111   357888888886 34


Q ss_pred             HHHHhhcC
Q 023897           80 LSEVLNSL   87 (275)
Q Consensus        80 ~~~v~~~l   87 (275)
                      +...++.+
T Consensus       244 ~~~~~~~l  251 (339)
T 1rjw_A          244 FQSAYNSI  251 (339)
T ss_dssp             HHHHHHHE
T ss_pred             HHHHHHHh
Confidence            44444443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.86  E-value=0.017  Score=49.12  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=33.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...+++.|+| +|.+|.+++..|.+.|++|++++|+++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            4567899999 999999999999999999999999974

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.83  E-value=0.012  Score=49.53  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=46.4

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHC--CCeEEEEcCChh-hhHHHHcCceEe----c---ChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQ--GHILRATSRTDH-SQLCHRSGISFF----S---DKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~--g~~V~~~dr~~~-~~~a~~~g~~~~----~---~~~~~~~~~aD~iilavp~   77 (275)
                      |+|.|.|+ |.+|+.+++.|.+.  |++|++.+|++. .......++...    +   ++.++ ++++|+||.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKA-FAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHH-HhcCCEEEEcCCC
Confidence            57999995 99999999999998  999999999874 222223344221    1   23343 4789999987653

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.83  E-value=0.011  Score=51.86  Aligned_cols=88  Identities=14%  Similarity=0.184  Sum_probs=53.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHH---C-CCeEEEE-cC-Chh-hhHHHH---------------------cC--ceEe--cC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIK---Q-GHILRAT-SR-TDH-SQLCHR---------------------SG--ISFF--SD   59 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~---~-g~~V~~~-dr-~~~-~~~a~~---------------------~g--~~~~--~~   59 (275)
                      +||+|+|+|++|+.+.+.|.+   . ..+|.+. ++ +++ .....+                     .|  +.+.  .+
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   82 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERS   82 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCC
Confidence            599999999999999999987   4 4576654 43 222 111111                     01  1222  23


Q ss_pred             hHHHhcc--CCCEEEEecCchhHHHHhhcCCCCCCCCC--cEEEeCCC
Q 023897           60 KRAFLEA--DNDVILISTSILSLSEVLNSLPVHCLQRR--TLIADVLS  103 (275)
Q Consensus        60 ~~~~~~~--~aD~iilavp~~~~~~v~~~l~~~~l~~~--~iv~d~~s  103 (275)
                      +++....  ++|+||.|+|.....+.....    +..|  .+++|..+
T Consensus        83 p~~l~~~~~~vDvV~e~tg~~~s~e~a~~~----l~~GakkVVId~~a  126 (339)
T 2x5j_O           83 LQSLPWRELGVDVVLDCTGVYGSREHGEAH----IAAGAKKVLFSHPG  126 (339)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSHHHHHHH----HHTTCSEEEESSCC
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHH----HHcCCCEEEEeccc
Confidence            4431001  789999999987666665554    2233  36888765

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.82  E-value=0.0085  Score=52.62  Aligned_cols=68  Identities=21%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHC-CCeEEEEcCChh-hhHH-HHcCceEe----c-C---hHHHhccCCCEEEEec
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ-GHILRATSRTDH-SQLC-HRSGISFF----S-D---KRAFLEADNDVILIST   75 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~~dr~~~-~~~a-~~~g~~~~----~-~---~~~~~~~~aD~iilav   75 (275)
                      .+++|+|.|.| .|.+|+.++..|.+. |++|++.+|++. .... ...++...    . +   +.++ ++++|+||-+.
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~-~~~~d~Vih~A   99 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH-VKKCDVILPLV   99 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH-HHHCSEEEECB
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH-hccCCEEEEcC
Confidence            45678999999 699999999999998 999999999874 2221 12333221    1 2   2333 36789999754


Q ss_pred             C
Q 023897           76 S   76 (275)
Q Consensus        76 p   76 (275)
                      .
T Consensus       100 ~  100 (372)
T 3slg_A          100 A  100 (372)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.79  E-value=0.012  Score=50.32  Aligned_cols=66  Identities=9%  Similarity=0.047  Sum_probs=38.3

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecCc
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTSI   77 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~   77 (275)
                      .|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++.........+.-..++.++ ++  ..|+||-+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHI-IHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHH-HHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHH-HHhhCCCEEEECCcc
Confidence            478999995 99999999999999999999998753210111111111233443 23  47999887643

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.78  E-value=0.008  Score=51.54  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhcc--CCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA--DNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp   76 (275)
                      .+|+|.|.| .|.+|+.+++.|.+.|++|++.+|+....      +.-..++.++ ++  +.|+||-+..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D------~~d~~~~~~~-~~~~~~d~vih~a~   64 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN------LLDSRAVHDF-FASERIDQVYLAAA   64 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCC------TTCHHHHHHH-HHHHCCSEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCC------ccCHHHHHHH-HHhcCCCEEEEcCe
Confidence            357999999 69999999999999999999988764211      1101123333 34  7899988754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.76  E-value=0.014  Score=51.27  Aligned_cols=89  Identities=17%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c-----ChHHHhccCCCEEEEecCc---hh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S-----DKRAFLEADNDVILISTSI---LS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~-----~~~~~~~~~aD~iilavp~---~~   79 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|.... +     +..+.+....|+||-++..   ..
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  258 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  258 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence            346899999999999999999889999999998874 566777776321 1     2222222367999999886   33


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +...++.     ++++..++.++.
T Consensus       259 ~~~~~~~-----l~~~G~iv~~g~  277 (360)
T 1piw_A          259 FNIMPKA-----MKVGGRIVSISI  277 (360)
T ss_dssp             TTTGGGG-----EEEEEEEEECCC
T ss_pred             HHHHHHH-----hcCCCEEEEecC
Confidence            3333222     444555665553

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.74  E-value=0.0086  Score=54.05  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++|.|||+|..|.++|..|++.|++|+++++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            579999999999999999999999999999765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.74  E-value=0.0091  Score=52.48  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||+|..|.+.|..|++.|++|+++++..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            579999999999999999999999999999864

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.74  E-value=0.011  Score=52.69  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.++|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~   37 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   37 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            347999999999999999999999999999998753

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.73  E-value=0.0067  Score=52.98  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEEEE-cCCh-hh-hHHHHc--------C--------c-------eEec--ChHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILRAT-SRTD-HS-QLCHRS--------G--------I-------SFFS--DKRA   62 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~-dr~~-~~-~~a~~~--------g--------~-------~~~~--~~~~   62 (275)
                      +||||+|+|++|+-+.+.|.+.. .+|... ++.. .. ....+.        |        +       .+..  ++++
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   81 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChhh
Confidence            58999999999999999998764 466544 4422 21 111111        1        1       1121  3433


Q ss_pred             H--hccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           63 F--LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        63 ~--~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .  ...++|+||.|+|.....+....+    +..|..++|+++
T Consensus        82 i~w~~~~vDvVf~atg~~~s~e~a~~~----l~~GakvVdlSa  120 (330)
T 1gad_O           82 LKWDEVGVDVVAEATGLFLTDETARKH----ITAGAKKVVMTG  120 (330)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHH----HHTTCSEEEESS
T ss_pred             CccccccCCEEEECCCccccHHHHHHH----HHCCCEEEEECC
Confidence            1  013799999999987666666554    445666666654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.73  E-value=0.011  Score=53.66  Aligned_cols=64  Identities=19%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHcCceEe--cChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRSGISFF--SDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~g~~~~--~~~~~~~~~~aD~iilav   75 (275)
                      ..+||.|||.|..|.+.|+.|.+.|++|+++|.....   .... .|+.+.  ....+.+ .++|+||++.
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~-~~~d~vV~s~   72 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWL-MAADLIVASP   72 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHH-HTCSEEEECT
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHh-ccCCEEEeCC
Confidence            4578999999999999999999999999999986531   2223 577653  2123433 5899999984

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.73  E-value=0.0077  Score=53.47  Aligned_cols=29  Identities=21%  Similarity=0.404  Sum_probs=24.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC---CeEEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG---HILRAT   40 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g---~~V~~~   40 (275)
                      +||+|+|+|++|+.+.+.|.+.+   ++|.+.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI   34 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            69999999999999999998762   566543

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=95.73  E-value=0.023  Score=50.60  Aligned_cols=73  Identities=16%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             CeEEEEcCChHH-HHHHHHHHHCCCeEEEEcCChhh-hHHHHcC------------------ceEe-cC---hHHHhccC
Q 023897           12 LKIGIIGFGPFG-QFLAKTMIKQGHILRATSRTDHS-QLCHRSG------------------ISFF-SD---KRAFLEAD   67 (275)
Q Consensus        12 ~~I~IIG~G~mG-~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g------------------~~~~-~~---~~~~~~~~   67 (275)
                      ||+..+|+|++| +.++..|.+.|++|+..|+++.. ....+.|                  ++.. +.   .-++ +.+
T Consensus         1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~-i~~   79 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDL-IAQ   79 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHH-HTT
T ss_pred             CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHH-HcC
Confidence            789999999999 45567778899999999999853 2211111                  1211 11   1223 368


Q ss_pred             CCEEEEecCchhHHHHhh
Q 023897           68 NDVILISTSILSLSEVLN   85 (275)
Q Consensus        68 aD~iilavp~~~~~~v~~   85 (275)
                      +|+|..++.++....+..
T Consensus        80 adlitT~vG~~~l~~i~~   97 (382)
T 3h2z_A           80 VDLVTTAVGPVVLERIAP   97 (382)
T ss_dssp             CSEEEECCCHHHHHHTHH
T ss_pred             CCEEEECCCcccHHHHHH
Confidence            999999999876544433

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.72  E-value=0.0089  Score=49.46  Aligned_cols=45  Identities=18%  Similarity=0.045  Sum_probs=37.6

Q ss_pred             CCcCCCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            1 MAVSSPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         1 ~~~~~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |+.+....+..++|.|.| .|.+|..+++.|.+.|++|++.+|++.
T Consensus         1 m~~~~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   46 (255)
T 1fmc_A            1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCccCCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            454444556678899998 599999999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.68  E-value=0.023  Score=53.10  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-CceEe----cC---hHHHhccCCCEEEEecCchh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-GISFF----SD---KRAFLEADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-g~~~~----~~---~~~~~~~~aD~iilavp~~~   79 (275)
                      ...++|.|+|+|.+|..+++.|.+.|++|++.|.+++ ...+.+. |+.+.    ++   ++++-++++|.+++ ++.+.
T Consensus       125 ~~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D~  203 (565)
T 4gx0_A          125 DTRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSDP  203 (565)
T ss_dssp             TCCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCHH
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCcH
Confidence            3457899999999999999999999999999999985 4555555 66321    12   22222468999988 55543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.68  E-value=0.033  Score=48.59  Aligned_cols=78  Identities=10%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChh-hhHHHHcCceEecChH---H---Hhcc--CCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDH-SQLCHRSGISFFSDKR---A---FLEA--DNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~-~~~a~~~g~~~~~~~~---~---~~~~--~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...++.++..  |.+|++.+++++ .+.+++.|....-+..   +   .+..  ..|+||-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            456899999999999999999888  999999999884 5666777764221211   1   1111  468888888765


Q ss_pred             -hHHHHhhcC
Q 023897           79 -SLSEVLNSL   87 (275)
Q Consensus        79 -~~~~v~~~l   87 (275)
                       .+...++.+
T Consensus       250 ~~~~~~~~~l  259 (344)
T 2h6e_A          250 ETTYNLGKLL  259 (344)
T ss_dssp             HHHHHHHHHE
T ss_pred             HHHHHHHHHh
Confidence             444444443

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.68  E-value=0.014  Score=51.06  Aligned_cols=88  Identities=20%  Similarity=0.290  Sum_probs=54.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC---CCeEEEE-cCC-hhh-hHHHH----c-----------------C--ceEe--cCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ---GHILRAT-SRT-DHS-QLCHR----S-----------------G--ISFF--SDK   60 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~---g~~V~~~-dr~-~~~-~~a~~----~-----------------g--~~~~--~~~   60 (275)
                      .||||+|+|++|+-+.+.|.+.   .++|... |+. ++. ....+    .                 |  +.+.  .++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            4899999999999999998876   3677654 442 221 11110    0                 1  1222  144


Q ss_pred             HHHhcc--CCCEEEEecCchhHHHHhhcCCCCCCCCCc--EEEeCCC
Q 023897           61 RAFLEA--DNDVILISTSILSLSEVLNSLPVHCLQRRT--LIADVLS  103 (275)
Q Consensus        61 ~~~~~~--~aD~iilavp~~~~~~v~~~l~~~~l~~~~--iv~d~~s  103 (275)
                      ++.-..  ++|+||.|+|.....+....+    +..|.  +|+|..+
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~----l~aGakkvVId~~a  123 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELH----LQAGAKKVIITAPA  123 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHH----HHcCCcEEEEeCCC
Confidence            431001  789999999987666666654    33455  8888764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.67  E-value=0.04  Score=48.68  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-----cChHHHhcc-------CCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-----SDKRAFLEA-------DNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~~-------~aD~iilav   75 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|+...     .+..+.+.+       ..|+||-|+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            34689999999999999999999998 8999999885 567777776421     122222211       367888777


Q ss_pred             Cc-hhHHHHhhcC
Q 023897           76 SI-LSLSEVLNSL   87 (275)
Q Consensus        76 p~-~~~~~v~~~l   87 (275)
                      .. ..+...++.+
T Consensus       262 G~~~~~~~~~~~l  274 (370)
T 4ej6_A          262 GVAETVKQSTRLA  274 (370)
T ss_dssp             CCHHHHHHHHHHE
T ss_pred             CCHHHHHHHHHHh
Confidence            74 3344444443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=95.67  E-value=0.011  Score=46.22  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||.|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            589999999999999999999999999999875

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.66  E-value=0.097  Score=45.66  Aligned_cols=34  Identities=26%  Similarity=0.581  Sum_probs=28.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSR   42 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr   42 (275)
                      ..++||||.|.|+||+.+++++...|.+|.. .|+
T Consensus         5 ~~~~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            5 ARELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            3567999999999999999998888888776 564

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.65  E-value=0.022  Score=49.60  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c----ChHHHhc---cCCCEEEEecCch-h
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S----DKRAFLE---ADNDVILISTSIL-S   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~---~~aD~iilavp~~-~   79 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|.... +    +..+.+.   ...|++|.++... .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            346899999999999999999999999999999985 567777776321 1    2222111   2568888887643 3


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      +...++.+     +++..++.++
T Consensus       246 ~~~~~~~l-----~~~G~iv~~G  263 (340)
T 3s2e_A          246 FSQAIGMV-----RRGGTIALNG  263 (340)
T ss_dssp             HHHHHHHE-----EEEEEEEECS
T ss_pred             HHHHHHHh-----ccCCEEEEeC
Confidence            34444443     3344444444

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.65  E-value=0.043  Score=50.03  Aligned_cols=69  Identities=13%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh-HHHHcCceEe-c--ChHHHhccCCCEEEEecCchh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ-LCHRSGISFF-S--DKRAFLEADNDVILISTSILS   79 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~-~a~~~g~~~~-~--~~~~~~~~~aD~iilavp~~~   79 (275)
                      .+.++|.|||.|.+|.+-++.|.+.|.+|++++++..  .. .+.+.++... .  ....  +.++|+||.|+....
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~--l~~~~lVi~at~~~~   84 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL--LDSCWLAIAATDDDT   84 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG--GTTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccc--cCCccEEEEcCCCHH
Confidence            4578999999999999999999999999999998642  22 2222345332 1  2233  378999999987763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.63  E-value=0.016  Score=50.03  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            7 SSSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         7 ~~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .....|+|.|.|+ |.+|+.+++.|.+.|++|++.+|+.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4556789999995 9999999999999999999999965

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.62  E-value=0.0082  Score=52.17  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHH---CCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIK---QGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~---~g~~V~~~dr~~   44 (275)
                      ++|.|||+|..|.+.|..|++   .|++|+++++++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            589999999999999999999   899999999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.62  E-value=0.027  Score=49.82  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e--cChH--HHhccCCCEEEEecCch-hHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F--SDKR--AFLEADNDVILISTSIL-SLSE   82 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~--~~~~--~~~~~~aD~iilavp~~-~~~~   82 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+++.|... .  .+.+  +.+....|+||-++... .+..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~  273 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  273 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHH
Confidence            346899999999999999999989999999999885 56677777632 1  1211  11124579999998865 3555


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .++.+     +++..++.++.
T Consensus       274 ~~~~l-----~~~G~iv~~G~  289 (369)
T 1uuf_A          274 FTTLL-----KRDGTMTLVGA  289 (369)
T ss_dssp             HHTTE-----EEEEEEEECCC
T ss_pred             HHHHh-----ccCCEEEEecc
Confidence            54443     34445555554

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.61  E-value=0.012  Score=51.79  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|..|.+.|..|++.|++|+++++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999999999999999999999874

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.59  E-value=0.012  Score=52.55  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~   44 (275)
                      ...+|.|||+|..|.++|..|++.|++ |+++++++
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            346899999999999999999999999 99999865

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=95.58  E-value=0.015  Score=54.95  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+..+|.|||+|..|.+.|..|++.|++|+++++.+
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            445689999999999999999999999999999873

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.58  E-value=0.011  Score=51.30  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|..|.+.|..|++.|++|+++++++
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4589999999999999999999999999999874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.57  E-value=0.011  Score=52.33  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~   44 (275)
                      ...+|.|||+|..|.+.|..|++ .| ++|+++++++
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            34589999999999999999999 99 9999999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.067  Score=46.63  Aligned_cols=89  Identities=11%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe------cChHHHhc----cCCCEEEEecCc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF------SDKRAFLE----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~------~~~~~~~~----~~aD~iilavp~   77 (275)
                      ...+|.|+|+ |.+|..+++.++..|.+|++.+++++ .+.+.+.|....      .+..+.+.    ...|++|-++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            3468999998 99999999999999999999998874 455666665311      12222211    146888888875


Q ss_pred             -hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 -LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 -~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       ..+...++.     ++++..++.+++
T Consensus       249 ~~~~~~~~~~-----l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EAAIEASTRY-----VRANGTTVLVGM  270 (347)
T ss_dssp             HHHHHHHTTS-----EEEEEEEEECCC
T ss_pred             HHHHHHHHHH-----HhcCCEEEEEeC
Confidence             333333333     334445555553

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.53  E-value=0.0098  Score=52.78  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .++|.|||+|..|.++|..|++.|++|+++++++
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3589999999999999999999999999999865

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.52  E-value=0.0041  Score=54.40  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC---CeEEE
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG---HILRA   39 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~~   39 (275)
                      ++||||+|+|++|+.+.+.|.+.+   .+|..
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eiva   32 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV   32 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEE
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEE
Confidence            368999999999999999998762   35544

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=95.51  E-value=0.015  Score=51.87  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             CCeEEEEcC-ChHHHHHHHHHHHCCC---eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch------hH
Q 023897           11 TLKIGIIGF-GPFGQFLAKTMIKQGH---ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL------SL   80 (275)
Q Consensus        11 ~~~I~IIG~-G~mG~sla~~L~~~g~---~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~------~~   80 (275)
                      ..||.|||. |..|..-+..+...|.   +|+++|+++...     |..    .++ + .++|+||-|+...      ..
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-----g~~----~~~-i-~~aDivIn~vlig~~aP~Lvt  282 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-----GGP----FDE-I-PQADIFINCIYLSKPIAPFTN  282 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-----CSC----CTH-H-HHSSEEEECCCCCSSCCCSCC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-----CCc----hhh-H-hhCCEEEECcCcCCCCCcccC
Confidence            468999999 9999999999999997   899999886321     222    234 3 6899999999852      22


Q ss_pred             HHHhhcCCCCCC-CCCcEEEeCCC
Q 023897           81 SEVLNSLPVHCL-QRRTLIADVLS  103 (275)
Q Consensus        81 ~~v~~~l~~~~l-~~~~iv~d~~s  103 (275)
                      .+.++.     + +++.+|+|++.
T Consensus       283 ~e~v~~-----m~k~gsVIVDVA~  301 (394)
T 2qrj_A          283 MEKLNN-----PNRRLRTVVDVSA  301 (394)
T ss_dssp             HHHHCC-----TTCCCCEEEETTC
T ss_pred             HHHHhc-----CcCCCeEEEEEec
Confidence            444443     5 78999999975

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.48  E-value=0.062  Score=46.50  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe------cChHHHhc----cCCCEEEEecCc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF------SDKRAFLE----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~------~~~~~~~~----~~aD~iilavp~   77 (275)
                      ...+|.|.|+ |.+|..+++.++..|.+|++.+++++ .+.+.+.|....      .+..+.+.    ...|++|-++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            3468999997 99999999999999999999999874 455556665211      12222110    135777777765


Q ss_pred             hhHHHHh
Q 023897           78 LSLSEVL   84 (275)
Q Consensus        78 ~~~~~v~   84 (275)
                      ..+...+
T Consensus       225 ~~~~~~~  231 (333)
T 1v3u_A          225 EFLNTVL  231 (333)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4433333

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.48  E-value=0.029  Score=46.34  Aligned_cols=39  Identities=13%  Similarity=0.081  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+..++|.|.| .|.+|.++++.|.+.|++|++.+|+++
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~   46 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAA   46 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            334567888998 699999999999999999999999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.48  E-value=0.089  Score=47.56  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=38.7

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+ |.+|...++.++..|.+|++.+++++ .+.+++.|..
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~  267 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD  267 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC
Confidence            4568999997 99999999999999999999888874 5667777763

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.46  E-value=0.017  Score=52.35  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~   44 (275)
                      +..++|+|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            345789999999999999999999999  999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.46  E-value=0.007  Score=53.01  Aligned_cols=36  Identities=14%  Similarity=0.016  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .....+|.|||+|..|.+.|..|+ .|++|+++++++
T Consensus         6 ~~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            6 HPIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            344578999999999999999999 699999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.44  E-value=0.015  Score=51.94  Aligned_cols=34  Identities=15%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |+|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~   34 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAM   34 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6899999999999999999999999999998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.42  E-value=0.014  Score=51.27  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||+|..|.+.|..|++.|++|+++++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3589999999999999999999999999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.41  E-value=0.037  Score=47.25  Aligned_cols=86  Identities=14%  Similarity=0.055  Sum_probs=57.4

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecC------hHHHhccCCCEEEEecCchhHH
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSD------KRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~------~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ...+|.|+|+ |.+|...++.++..|.+|++.+++++ .+.+.+.|....-+      ..+.+ ...|++|- +....+.
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~-~~~d~vid-~g~~~~~  202 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW-GGLDLVLE-VRGKEVE  202 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT-TSEEEEEE-CSCTTHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh-cCceEEEE-CCHHHHH
Confidence            3568999997 99999999999999999999999874 46666777632111      11211 46788888 7765555


Q ss_pred             HHhhcCCCCCCCCCcEEEeCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ..++.+     +++..++.++
T Consensus       203 ~~~~~l-----~~~G~~v~~g  218 (302)
T 1iz0_A          203 ESLGLL-----AHGGRLVYIG  218 (302)
T ss_dssp             HHHTTE-----EEEEEEEEC-
T ss_pred             HHHHhh-----ccCCEEEEEe
Confidence            444443     3334455444

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.41  E-value=0.025  Score=49.50  Aligned_cols=38  Identities=18%  Similarity=0.094  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHH--CCCeEEEEcCCh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIK--QGHILRATSRTD   44 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~--~g~~V~~~dr~~   44 (275)
                      +.+.+|+|.|.| .|.+|+.++..|.+  .|++|++.+|++
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~   46 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFR   46 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence            456678999998 69999999999999  899999999865

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.40  E-value=0.031  Score=49.24  Aligned_cols=89  Identities=20%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-HcCceEe---cChHHH--hccCCCEEEEecCch-hHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-RSGISFF---SDKRAF--LEADNDVILISTSIL-SLS   81 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-~~g~~~~---~~~~~~--~~~~aD~iilavp~~-~~~   81 (275)
                      ...+|.|+|+|.+|...++.++..|.+|++.+++++ .+.+. +.|....   .+.+..  +....|+||-++... .+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  266 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLL  266 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHH
Confidence            456899999999999999999999999999999885 44544 6676321   121111  123578888888754 344


Q ss_pred             HHhhcCCCCCCCCCcEEEeCCC
Q 023897           82 EVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        82 ~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..++.+     +++..++.+++
T Consensus       267 ~~~~~l-----~~~G~iv~~g~  283 (366)
T 1yqd_A          267 PLFGLL-----KSHGKLILVGA  283 (366)
T ss_dssp             HHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHH-----hcCCEEEEEcc
Confidence            444443     23344554543

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.40  E-value=0.021  Score=49.32  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=32.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|+|.|.| .|.+|+.+++.|.+.|++|++.+|+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~   39 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLV   39 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence            467999999 69999999999999999999999976

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.39  E-value=0.027  Score=47.22  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             eEEEEcC-ChHHHHHHHHHHHC--CCeEEEEcCChhh-hHHHHcCceEe-------cChHHHhccCCCEEEEecCc
Q 023897           13 KIGIIGF-GPFGQFLAKTMIKQ--GHILRATSRTDHS-QLCHRSGISFF-------SDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        13 ~I~IIG~-G~mG~sla~~L~~~--g~~V~~~dr~~~~-~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp~   77 (275)
                      +|.|.|+ |.+|+.+++.|.+.  |++|++.+|++.. ......++...       .++.++ ++++|+||.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSA-LQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHH-HhCCCEEEEeCCC
Confidence            5889995 99999999999998  9999999998742 22223344221       123343 4788999987653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.38  E-value=0.033  Score=48.74  Aligned_cols=46  Identities=20%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  213 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT  213 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            34689999999999999999888898 8999999885 5677777763

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=95.38  E-value=0.0078  Score=52.54  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=52.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEE-cC-Chh-hhHHHH----cC-------------------ceEe--cChHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRAT-SR-TDH-SQLCHR----SG-------------------ISFF--SDKRAF   63 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~-dr-~~~-~~~a~~----~g-------------------~~~~--~~~~~~   63 (275)
                      +||||+|+|++|+.+.+.|.++.++|..+ |. +.+ .....+    .|                   +.+.  .++++.
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l   80 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhhC
Confidence            48999999999999999988777787754 32 111 111111    11                   1222  144432


Q ss_pred             hcc--CCCEEEEecCchhHHHHhhcCCCCCCCCCc--EEEeCCC
Q 023897           64 LEA--DNDVILISTSILSLSEVLNSLPVHCLQRRT--LIADVLS  103 (275)
Q Consensus        64 ~~~--~aD~iilavp~~~~~~v~~~l~~~~l~~~~--iv~d~~s  103 (275)
                      -..  ++|+||.|+|.....+.....    +..|.  +++|..+
T Consensus        81 ~w~~~gvDiV~estG~~~s~e~a~~~----l~aGakkvVIsaps  120 (331)
T 2g82_O           81 PWAEAGVGVVIESTGVFTDADKAKAH----LEGGAKKVIITAPA  120 (331)
T ss_dssp             CTTTTTEEEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             cccccCCCEEEECCCchhhHHHHHHH----HHCCCCEEEECCCC
Confidence            001  679999999987666655554    33344  7777654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=95.37  E-value=0.018  Score=51.78  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...|.|||+|..|.+.|..|++.|+ +|+++++++
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            4579999999999999999999999 999999875

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.37  E-value=0.019  Score=49.64  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|+|.|.| .|.+|+.+++.|.+.|++|++.+|++
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34678999999 69999999999999999999999975

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.36  E-value=0.011  Score=52.70  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            589999999999999999999999999999864

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.36  E-value=0.031  Score=48.75  Aligned_cols=67  Identities=16%  Similarity=0.278  Sum_probs=47.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHC-CC-eEEEEcCChhh-h-HHHH---cCceE-e---cC---hHHHhccCCCEEEE
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQ-GH-ILRATSRTDHS-Q-LCHR---SGISF-F---SD---KRAFLEADNDVILI   73 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~-g~-~V~~~dr~~~~-~-~a~~---~g~~~-~---~~---~~~~~~~~aD~iil   73 (275)
                      +..++|.|.| +|.+|+.+++.|.+. |+ +|++++|++.. . ....   .++.. .   .+   +.++ +++.|+||-
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYA-LEGVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHH-TTTCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHH-HhcCCEEEE
Confidence            4567899999 699999999999999 97 99999999742 2 1111   13321 1   12   2343 468999998


Q ss_pred             ecC
Q 023897           74 STS   76 (275)
Q Consensus        74 avp   76 (275)
                      +..
T Consensus        98 ~Aa  100 (344)
T 2gn4_A           98 AAA  100 (344)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            864

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.34  E-value=0.028  Score=51.30  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCC----hHHHHHHHHHHHCC-CeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           10 STLKIGIIGFG----PFGQFLAKTMIKQG-HILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        10 ~~~~I~IIG~G----~mG~sla~~L~~~g-~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ...+|+|||++    .+|..+.+.|.+.| ..|+.+++....    -.|...+.++.++ .+..|++++++|+....+++
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~----i~G~~~y~sl~~l-p~~~Dlavi~vp~~~~~~~v   81 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDI-PDEIDLAIIVVPKRFVKDTL   81 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSC-SSCCSEEEECSCHHHHHHHH
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCe----ECCEeccCCHHHc-CCCCCEEEEecCHHHHHHHH
Confidence            35789999987    89999999999885 667666655321    1477888888884 46789999999999999999


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      ++.
T Consensus        82 ~e~   84 (457)
T 2csu_A           82 IQC   84 (457)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.33  E-value=0.019  Score=49.44  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..|+|.|.|+ |.+|+.+++.|.+.|++|++.+|++.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4579999995 99999999999999999999999863

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.33  E-value=0.0093  Score=52.28  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -|.|||+|..|.++|..|+++|++|+++++.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.32  E-value=0.029  Score=49.68  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++|+|||.|..|..+++.+++.|++|+++|+++.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3457899999999999999999999999999998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.31  E-value=0.027  Score=50.04  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..++|+|||.|.+|..+++.+++.|++|+++|.++.
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            3456899999999999999999999999999998763

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.29  E-value=0.061  Score=47.38  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceE-ec----ChHHHhc----cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISF-FS----DKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~-~~----~~~~~~~----~~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.+++++ .+.+++.|... .+    +..+.+.    ...|+||-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            34689999999999999998888898 6999999885 56677777632 11    2211111    1468888888753


Q ss_pred             -hHHHHhhc
Q 023897           79 -SLSEVLNS   86 (275)
Q Consensus        79 -~~~~v~~~   86 (275)
                       .+...++.
T Consensus       270 ~~~~~~~~~  278 (371)
T 1f8f_A          270 EILKQGVDA  278 (371)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence             33444443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.25  E-value=0.032  Score=48.23  Aligned_cols=77  Identities=14%  Similarity=-0.003  Sum_probs=51.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----cChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+| +|.+|...++.++..|.+|++.+++++ .+.+.+.|....     .+..+.+.     ...|++|-|+..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            456899999 799999999999999999999999884 456666665211     11111110     146777777766


Q ss_pred             hhHHHHhhc
Q 023897           78 LSLSEVLNS   86 (275)
Q Consensus        78 ~~~~~v~~~   86 (275)
                      ..+...++.
T Consensus       220 ~~~~~~~~~  228 (325)
T 3jyn_A          220 DTWLTSLDS  228 (325)
T ss_dssp             GGHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            544444433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.25  E-value=0.069  Score=45.79  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-CCCeEEEEcCChh-hhHHHH----cCc---eE-ecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIK-QGHILRATSRTDH-SQLCHR----SGI---SF-FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~-~g~~V~~~dr~~~-~~~a~~----~g~---~~-~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+|..||+|..|.+.. .+++ .|.+|+++|.++. .+.|++    .|.   ++ ..+..+.--...|+|+++.-...
T Consensus       122 ~g~rVLDIGcG~G~~ta~-~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~d  200 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGI-LLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEP  200 (298)
T ss_dssp             TTCEEEEECCCSSCHHHH-HHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCSC
T ss_pred             CcCEEEEECCCccHHHHH-HHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCccC
Confidence            457999999998654422 2333 5789999999985 343332    243   22 22332221146899998755444


Q ss_pred             HHHHhhcC-CCCCCCCCcEEE
Q 023897           80 LSEVLNSL-PVHCLQRRTLIA   99 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~   99 (275)
                      ...+++++ ..  +++|..++
T Consensus       201 ~~~~l~el~r~--LkPGG~Lv  219 (298)
T 3fpf_A          201 KRRVFRNIHRY--VDTETRII  219 (298)
T ss_dssp             HHHHHHHHHHH--CCTTCEEE
T ss_pred             HHHHHHHHHHH--cCCCcEEE
Confidence            45666666 55  66665544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.23  E-value=0.049  Score=47.45  Aligned_cols=88  Identities=11%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe----cChHHHhc-----cCCCEEEEecCch
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF----SDKRAFLE-----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~~~~~-----~~aD~iilavp~~   78 (275)
                      ...+|.|+|+ |.+|...++.++..|.+|++.+++++ .+.+.+.|....    .+..+.+.     ...|++|-|+...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            4568999997 99999999999999999999999874 456666665321    12211110     1467777777765


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      .+...+..+     +++..++.++
T Consensus       239 ~~~~~~~~l-----~~~G~iv~~G  257 (342)
T 4eye_A          239 AFDDAVRTL-----ASEGRLLVVG  257 (342)
T ss_dssp             CHHHHHHTE-----EEEEEEEEC-
T ss_pred             HHHHHHHhh-----cCCCEEEEEE
Confidence            544444433     3334454444

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.21  E-value=0.039  Score=47.85  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----cChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+| +|.+|...++.++..|.+|++.+++++ .+.+.+.|....     .+..+.+.     ...|++|-|+..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            456899999 899999999999999999999999884 566677776321     11111110     246788888776


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..+...++.+     +++..++.++.
T Consensus       228 ~~~~~~~~~l-----~~~G~iv~~G~  248 (334)
T 3qwb_A          228 DTFEISLAAL-----KRKGVFVSFGN  248 (334)
T ss_dssp             GGHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHh-----ccCCEEEEEcC
Confidence            5555555543     33445555543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.21  E-value=0.045  Score=48.15  Aligned_cols=77  Identities=18%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh---h-hhHHHHcCceEec--ChHHHhc---cCCCEEEEecCch-hH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD---H-SQLCHRSGISFFS--DKRAFLE---ADNDVILISTSIL-SL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~---~-~~~a~~~g~~~~~--~~~~~~~---~~aD~iilavp~~-~~   80 (275)
                      ..+|.|+|+|.+|...++.++..|.+|++.++++   + .+.+.+.|+...+  +..+.+.   ...|++|-++... .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            6789999999999999999999999999999986   4 4566667765431  1111111   2478888888764 34


Q ss_pred             -HHHhhcC
Q 023897           81 -SEVLNSL   87 (275)
Q Consensus        81 -~~v~~~l   87 (275)
                       ...++.+
T Consensus       261 ~~~~~~~l  268 (366)
T 2cdc_A          261 LGNVIPLL  268 (366)
T ss_dssp             HHHHGGGE
T ss_pred             HHHHHHHH
Confidence             4444443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.19  E-value=0.016  Score=53.01  Aligned_cols=35  Identities=23%  Similarity=0.162  Sum_probs=31.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |++|.|||+|.-|.+-|..|+++|++|+++.+++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            57899999999999999999999999999998763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.18  E-value=0.047  Score=48.52  Aligned_cols=91  Identities=10%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh--------hh-----hHHHHcC-ceEecChHHHhccCCCEEEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD--------HS-----QLCHRSG-ISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~--------~~-----~~a~~~g-~~~~~~~~~~~~~~aD~iil   73 (275)
                      ....||.|+|+|..|.++|+.+...|. +|+++|++-        .+     ..+.... .....++.++ ++++|++|=
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~ea-v~~ADV~IG  264 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDA-LEGADIFIG  264 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHH-HHTTCSEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHH-hccCCEEEe
Confidence            455799999999999999999999998 999999872        11     1222211 1123467786 488998776


Q ss_pred             ecCch-hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           74 STSIL-SLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        74 avp~~-~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      +..+. ..+++++.     +.++.+|+++++-.
T Consensus       265 ~Sapgl~T~EmVk~-----Ma~~pIIfalsNPt  292 (398)
T 2a9f_A          265 VSAPGVLKAEWISK-----MAARPVIFAMANPI  292 (398)
T ss_dssp             CCSTTCCCHHHHHT-----SCSSCEEEECCSSS
T ss_pred             cCCCCCCCHHHHHh-----hCCCCEEEECCCCC
Confidence            54443 34677776     45678999988644

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.17  E-value=0.021  Score=51.00  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+|.|||+|..|.+.|..|+++|++|+++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            589999999999999999999999999999875

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.17  E-value=0.017  Score=51.02  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~   45 (275)
                      |+|.|||+|..|.++|..|++.  |++|+++++++.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            5899999999999999999999  999999998763

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.14  E-value=0.025  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +++|.|.| +|.+|+.+++.|.+.|++|++..|++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~   43 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDP   43 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCc
Confidence            57899999 79999999999999999999988875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.13  E-value=0.032  Score=48.54  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----cChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+|+| .+|...++.++..|.+|++.+++++ .+.+.+.|....     .+..+.+.     ...|++|-|+..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            45689999986 9999999999999999999999874 566666666321     11111110     156888888877


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                      ....+.++.     ++++..++.++
T Consensus       224 ~~~~~~~~~-----l~~~G~iv~~G  243 (340)
T 3gms_A          224 PDGNELAFS-----LRPNGHFLTIG  243 (340)
T ss_dssp             HHHHHHHHT-----EEEEEEEEECC
T ss_pred             hhHHHHHHH-----hcCCCEEEEEe
Confidence            665555532     33444555554

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.13  E-value=0.056  Score=47.54  Aligned_cols=78  Identities=19%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----cChHHHhc----cCCCEEEEecCch
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~----~~aD~iilavp~~   78 (275)
                      ...+|.|+| +|.+|...++.++..|.+|++.+++++ .+.+.+.|....     .+..+.+.    ...|++|-|+...
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGA  242 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHH
Confidence            346899999 799999999999999999999999874 456666676321     11212110    1367777777764


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      .+...++.+
T Consensus       243 ~~~~~~~~l  251 (362)
T 2c0c_A          243 MFDLAVDAL  251 (362)
T ss_dssp             HHHHHHHHE
T ss_pred             HHHHHHHHH
Confidence            444444443

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.11  E-value=0.015  Score=50.69  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC------CeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG------HILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g------~~V~~~dr~~   44 (275)
                      |+|.|||+|.+|.+.|..|+++|      ++|++++++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            58999999999999999999998      8999999875

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=95.11  E-value=0.034  Score=46.35  Aligned_cols=39  Identities=13%  Similarity=0.139  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .....+++.|.| .|.+|.++++.|.+.|++|++.+|+.+
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (259)
T 4e6p_A            4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIE   43 (259)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            344567788998 699999999999999999999999874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.11  E-value=0.018  Score=49.62  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+++|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.11  E-value=0.014  Score=50.11  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      ++++|.|||+|.-|.+.|..|++.|++|+++++.
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4568999999999999999999999999999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.10  E-value=0.029  Score=47.27  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..++|.|.| .|.+|..+++.|.+.|++|++.+|++.
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~   67 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   67 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChH
Confidence            3456788998 699999999999999999999999874

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.09  E-value=0.022  Score=49.47  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +.+|+|.|.| .|.+|+.++..|.+.|++|++.+|++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3568999999 69999999999999999999999975

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.08  E-value=0.064  Score=46.69  Aligned_cols=88  Identities=11%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CCeEEEEcCChh-hhHHHHcCceEe----cChHHHhc-----cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRATSRTDH-SQLCHRSGISFF----SDKRAFLE-----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~dr~~~-~~~a~~~g~~~~----~~~~~~~~-----~~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...++.++.. |.+|++.+++++ .+.+++.|....    .+..+.+.     ...|++|-|+...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            346899999999999988888777 689999999985 567777776321    11111110     1578888888876


Q ss_pred             -hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897           79 -SLSEVLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        79 -~~~~v~~~l~~~~l~~~~iv~d~~  102 (275)
                       .+...++.+     +++..++.++
T Consensus       251 ~~~~~~~~~l-----~~~G~iv~~G  270 (345)
T 3jv7_A          251 STIDTAQQVV-----AVDGHISVVG  270 (345)
T ss_dssp             HHHHHHHHHE-----EEEEEEEECS
T ss_pred             HHHHHHHHHH-----hcCCEEEEEC
Confidence             444444443     3334455444

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.05  E-value=0.021  Score=51.48  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...+|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            345899999999999999999999999999999874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.05  E-value=0.02  Score=49.61  Aligned_cols=67  Identities=12%  Similarity=0.039  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhh--HHHHcCceEecChHHHhccCCCEEEEecC
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQ--LCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~--~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      ..+|+|.|.|+ |.+|+.++..|.+.|++|++.+|++...  ......+.-..++.++ +.++|+||-+..
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih~A~   86 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDA-IMGVSAVLHLGA   86 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHH-HTTCSEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHH-HhCCCEEEECCc
Confidence            35678999995 9999999999999999999999986320  0000011111223443 478999997754

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.04  E-value=0.027  Score=47.96  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |||.|.|+ |.+|+.+++.|.+.|++|++.+|++.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            68999995 99999999999999999999999764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.04  E-value=0.015  Score=50.89  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||+|..|.+.|..|++.|++|+++++..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999864

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.03  E-value=0.02  Score=48.39  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=42.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhcc--CCCEEEEecC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEA--DNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~--~aD~iilavp   76 (275)
                      .++|.|.| +|.+|+.+++.|.+.|++|++.+|+. +...        ..++.++ ++  ..|+||-+..
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d--------~~~~~~~-~~~~~~d~vih~A~   72 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITN--------VLAVNKF-FNEKKPNVVINCAA   72 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTC--------HHHHHHH-HHHHCCSEEEECCC
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCC--------HHHHHHH-HHhcCCCEEEECCc
Confidence            46899999 69999999999999999999999874 2210        0122332 24  6899988764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.02  E-value=0.027  Score=48.39  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE-e---cC---hHHHhcc--CCCEEEEecC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF-F---SD---KRAFLEA--DNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~-~---~~---~~~~~~~--~aD~iilavp   76 (275)
                      ||+|.|.| .|.+|+.+++.|.+.|++|++.+|+... ......++.. .   .+   ++++ ++  +.|+||-+..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~d~vih~a~   76 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV-FTQENIEAVMHFAA   76 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHH-HHHSCEEEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHH-HhhcCCCEEEECCc
Confidence            47899998 6999999999999999999999987531 1111113321 1   12   2333 34  7899988754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.02  E-value=0.055  Score=47.38  Aligned_cols=78  Identities=21%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             CCCeEEEE-cCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-----cChHHHhc----cCCCEEEEecCch
Q 023897           10 STLKIGII-GFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~II-G~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~----~~aD~iilavp~~   78 (275)
                      ...+|.|+ |+|.+|...++.++..|.+|++.+++++ .+.+.+.|....     .+..+.+.    ...|++|-|+...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            44689999 5899999999999999999999999985 466666665321     11212111    2478888888776


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      .+...++.+
T Consensus       247 ~~~~~~~~l  255 (353)
T 4dup_A          247 YFERNIASL  255 (353)
T ss_dssp             GHHHHHHTE
T ss_pred             HHHHHHHHh
Confidence            555555543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.01  E-value=0.033  Score=49.46  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      ....++|.|||+|.-|.+.|..|.++|++|++++++
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            345679999999999999999999999999999987

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.01  E-value=0.023  Score=45.48  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~~   45 (275)
                      +.|+|.|.| .|.+|+.+++.|.+.|+  +|++.+|++.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~   42 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   42 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc
Confidence            357999999 79999999999999998  9999999874

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=95.00  E-value=0.017  Score=51.00  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            579999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	2e-09
d2pv7a1	128	a.100.1.12 (A:244-371) Prephenate dehydrogenase Ty	1e-07
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	2e-05
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	6e-05
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	4e-04
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	0.001
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	0.001
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	0.002
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	0.003
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	0.003

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 21/161 (13%)

Query: 13  KIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
           KI I+G +G  G   A+ +   G+ +    R D +        +        +    + I
Sbjct: 11  KIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETI 70

Query: 72  LISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP 131
                               L    L+AD+ SVK  P   +L+V      VL  HPMFG 
Sbjct: 71  ER--------------LKPYLTENMLLADLTSVKREPLAKMLEVHTG--AVLGLHPMFGA 114

Query: 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLE 172
           +      +           R        L   +  G K+ +
Sbjct: 115 DIASMAKQVVVRC----DGRFPERYEWLLEQIQIWGAKIYQ 151

>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 128

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 176 EEHDKVAAKSQFLTH----TIGRVLSELEIQS---TSMNTKGFETLIRLKESSVNDSFDL 228
            EHD      Q L H      G  LS+  I      ++++  +   + +         +L
Sbjct: 3   TEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAEL 62

Query: 229 FSGLYIHNRFAKQELLDLEAAFEKVKHKLQQKMEE 263
           ++ + +        +  L+  +++     +    +
Sbjct: 63  YADIIMDKSENLAVIETLKQTYDEALTFFENNDRQ 97

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 12  LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS-GISFFSDKRAFLEADNDV 70
           +K+G IG G  G+ ++K ++K G+ L  + R   +     + G    S  +A  E  + +
Sbjct: 1   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60

Query: 71  ILISTSILSLSEVL---NSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
           I +  +   + EV    N +         LI          R +   +  + +++L    
Sbjct: 61  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120

Query: 128 MFGPESGQNG 137
             G     +G
Sbjct: 121 SGGEPKAIDG 130

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 40.5 bits (93), Expect = 6e-05
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 3/160 (1%)

Query: 13  KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVIL 72
           KIG++G G  G  LA  + ++GH L   SR   +              +         I+
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61

Query: 73  ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDV--LCTHPMFG 130
              + + L        +  L    ++ DV SVK        Q+    +    +      G
Sbjct: 62  FLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQG 121

Query: 131 PESGQNG-WKDFAFVYEKVRIRDEATCSSFLRIFESEGCK 169
            +  +   + +  +V       D    +    + E  G K
Sbjct: 122 IDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVK 161

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
          L++G IGFG   Q LA  +  +G  +  +          R+     ++          V+
Sbjct: 1  LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 72 LI 73
          + 
Sbjct: 61 IS 62

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 12/164 (7%)

Query: 14  IGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILI 73
           +  +G G   +F  + +  +  I    SR+              +         N V+ +
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61

Query: 74  STSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES 133
                 +  V N L +           V         +  +     +           E 
Sbjct: 62  IVPDRYIKTVANHLNLGD------AVLVHCSGFLSSEIFKKSGRASIHPN--FSFSSLEK 113

Query: 134 GQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEE 177
                    F  E     DE       +I E    K   +  E+
Sbjct: 114 ALEMKDQIVFGLEG----DERGLPIVKKIAEEISGKYFVIPSEK 153

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI 71
          +I  IG G  G  +A  ++K G++L        +     +  +  +          DV+
Sbjct: 3  QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHR 51
          KI ++G G  GQ     + KQGH ++   R         
Sbjct: 2  KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN 40

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43
          ++ +G++G G  G  LA  + ++G  +   +RT
Sbjct: 1  SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRT 33

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 7  SSSSTLKIGIIGFGPFGQFLAKTM--IKQGHILRATSRTDHSQLCHRSGISFFSDKRAFL 64
          ++S    + ++G G  G    + +   +    L         +L     +   S + A  
Sbjct: 3  TNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALR 62

Query: 65 EADND 69
            + D
Sbjct: 63 SQEID 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.95
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.92
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.86
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.86
d2g5ca1	110	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.86
d2f1ka1	114	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.85
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.84
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.82
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.78
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.75
d2pv7a1	128	Prephenate dehydrogenase TyrA {Haemophilus influen	99.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.69
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.68
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.68
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.64
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.62
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.61
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.6
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.49
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.47
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.31
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.87
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.78
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.74
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.7
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.69
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.68
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.66
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.65
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.63
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.63
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.61
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.6
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.6
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.6
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.58
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.58
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.55
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.54
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.53
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.52
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.51
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.49
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.47
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.47
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.45
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.43
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.42
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.38
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.38
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.35
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.34
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	98.25
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.25
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.25
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.24
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.2
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.16
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.06
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.04
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.03
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.02
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.98
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.96
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.93
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.93
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.92
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.88
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.88
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.88
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.86
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.84
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.84
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.84
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.83
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.75
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.73
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.68
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.67
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.61
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.59
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.59
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.57
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.56
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.54
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.51
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.51
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.44
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.44
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	97.41
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.35
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.31
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.3
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.29
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.28
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.23
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.16
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.14
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.13
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.12
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.12
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.12
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.11
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.07
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.01
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.98
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.97
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.92
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.84
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.81
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.81
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.81
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.8
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.77
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.74
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.69
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.66
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.65
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.56
d1yqga1	111	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.52
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.48
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.47
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.47
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.44
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.44
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.41
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.4
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.37
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.36
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.35
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.35
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.29
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.27
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.24
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.23
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.23
d2ahra1	104	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.19
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.16
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.15
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.06
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.03
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.03
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.02
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.01
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.0
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.96
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.89
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.89
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.88
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.82
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.79
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.76
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.65
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.65
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.55
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.53
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.5
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.48
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.43
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.35
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.31
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.29
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.29
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.13
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.09
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.09
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.04
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.97
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.91
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.86
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.84
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.83
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.58
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.52
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.49
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.44
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.42
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.41
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.36
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.35
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.31
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.23
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.22
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.19
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.18
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	94.13
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.12
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.02
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	93.93
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.89
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.65
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.58
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.51
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.49
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.45
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.35
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.33
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.32
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.3
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.3
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.24
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.23
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.16
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.03
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.02
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.98
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.98
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	92.93
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.92
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.92
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.89
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.78
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.76
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.75
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.69
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.65
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.57
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.56
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.55
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.5
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.48
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.41
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.4
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.34
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.3
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.29
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.23
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.22
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.19
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.19
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.12
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.1
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.09
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.07
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.04
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.01
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.98
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.98
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.98
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.96
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.93
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.9
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.88
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	91.87
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.8
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.71
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.71
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.59
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	91.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.51
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.48
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	91.43
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.4
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.39
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	91.31
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.27
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.26
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.1
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.07
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.03
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.78
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.73
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.73
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.67
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.65
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	90.63
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.61
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.6
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	90.57
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.53
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.49
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.45
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.43
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.39
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.38
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.34
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.32
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	90.2
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.16
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.1
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	90.09
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.96
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.87
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.61
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	89.33
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.09
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.0
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.87
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.66
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.6
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	88.44
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.23
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.02
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	87.92
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	87.81
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.79
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	87.78
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.53
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	87.38
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	87.38
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	87.16
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	87.15
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.12
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	87.04
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.02
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.92
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.09
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.06
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.83
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	85.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	85.28
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.18
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.09
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	85.0
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	84.81
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.39
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.38
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.31
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	84.25
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	84.11
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	83.82
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	83.66
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.27
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	83.22
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	83.16
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	82.85
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.65
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.65
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.39
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.3
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	82.28
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.21
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	81.63
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	81.58
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.51
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	80.15
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	80.06

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.95  E-value=9.6e-28  Score=191.32  Aligned_cols=159  Identities=19%  Similarity=0.231  Sum_probs=134.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      |+||+|||+|+||+++|++|++.|+  +|++||++++ .+.+.+.|.  ...++..+....++|+||+|+|++.+.++++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            3579999999999999999999986  7999999985 567777776  3455555432357999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                      ++ ++  ++++++++|++|+|..+.+.+.+.++  .+|+++|||+|++.++      ..|.|.++++++....+++.++.
T Consensus        81 ~l~~~--~~~~~ii~d~~s~k~~~~~~~~~~~~--~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~  156 (171)
T d2g5ca2          81 KLSYI--LSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL  156 (171)
T ss_dssp             HHHHH--SCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred             hhhcc--ccccccccccccccHHHHHHHHHhhc--ccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHH
Confidence            99 77  89999999999999999888887765  4799999999998642      34678889999887778889999


Q ss_pred             HHHHHHHcCCeEEEc
Q 023897          159 FLRIFESEGCKMLEM  173 (275)
Q Consensus       159 ~~~l~~~~G~~v~~~  173 (275)
                      ++++|+.+|++++.|
T Consensus       157 v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         157 VKRVWEDVGGVVEYM  171 (171)
T ss_dssp             HHHHHHHTTCEEEEC
T ss_pred             HHHHHHHcCCEEEeC
Confidence            999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.95  E-value=3.1e-27  Score=187.36  Aligned_cols=155  Identities=24%  Similarity=0.350  Sum_probs=131.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNSL-   87 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-   87 (275)
                      |||+|||+|+||+++|+.|+++||+|++|||+++ .+.+.+.|.  ...++.+.  ++++|+||+|||++.+.++++++ 
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~--~~~~DiIilavp~~~~~~vl~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSL--LQTAKIIFLCTPIQLILPTLEKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGG--GTTCSEEEECSCHHHHHHHHHHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeeccc--ccccccccccCcHhhhhhhhhhhh
Confidence            7999999999999999999999999999999985 566777775  34445543  48999999999999999999999 


Q ss_pred             CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHH
Q 023897           88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLR  161 (275)
Q Consensus        88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      +.  ++++++++|++|+|..+...+.+..+   ++++.||++|++.++      +.+.+.++++++....+++.++.+++
T Consensus        79 ~~--l~~~~iv~~~~s~~~~~~~~~~~~~~---~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~  153 (165)
T d2f1ka2          79 PH--LSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRS  153 (165)
T ss_dssp             GG--SCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHH
T ss_pred             hh--cccccceeeccccchHHHHHHHHhhc---ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHH
Confidence            87  89999999999999888777777653   588999999997643      23567778888766668889999999


Q ss_pred             HHHHcCCeEEEc
Q 023897          162 IFESEGCKMLEM  173 (275)
Q Consensus       162 l~~~~G~~v~~~  173 (275)
                      +|+.+|++++.+
T Consensus       154 l~~~lG~~v~~c  165 (165)
T d2f1ka2         154 VLEPLGVKIYLC  165 (165)
T ss_dssp             HHGGGTCEEEEC
T ss_pred             HHHHhCCEEEeC
Confidence            999999998864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=9.7e-25  Score=170.52  Aligned_cols=145  Identities=28%  Similarity=0.384  Sum_probs=122.9

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      +.+.++||+||| +|+||++||+.|+++||+|.+|||++...            .++. +.++|++++++|...+.+++.
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~------------~~~~-~~~~~~v~~~~~~~~~~~v~~   71 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV------------AESI-LANADVVIVSVPINLTLETIE   71 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG------------HHHH-HTTCSEEEECSCGGGHHHHHH
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc------------cchh-hhhccccccccchhhheeeee
Confidence            455678999999 99999999999999999999999987421            1232 478999999999999999999


Q ss_pred             cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      ++ +.  ++++++++|++|+|..+.+.+.+.++  .+|++.|||+||+.+.  ..+...++++..  +++.++++.++|+
T Consensus        72 ~~~~~--~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~~Gp~~~~--~~g~~~v~~~g~--~~~~~~~~~~ll~  143 (152)
T d2pv7a2          72 RLKPY--LTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMFGADIAS--MAKQVVVRCDGR--FPERYEWLLEQIQ  143 (152)
T ss_dssp             HHGGG--CCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECSCTTCSC--CTTCEEEEEEEE--CGGGTHHHHHHHH
T ss_pred             ccccc--ccCCceEEEecccCHHHHHHHHHHcc--CCEEEecccCCCcccc--cCCcEEEEecCC--CHHHHHHHHHHHH
Confidence            99 87  88999999999999999998888764  4789999999999763  356666666543  5678999999999


Q ss_pred             HcCCeEEE
Q 023897          165 SEGCKMLE  172 (275)
Q Consensus       165 ~~G~~v~~  172 (275)
                      .+|++++.
T Consensus       144 ~~Ga~v~e  151 (152)
T d2pv7a2         144 IWGAKIYQ  151 (152)
T ss_dssp             HTTCEEEE
T ss_pred             HhCCEEEe
Confidence            99999986

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.86  E-value=1.7e-21  Score=151.87  Aligned_cols=149  Identities=14%  Similarity=0.217  Sum_probs=116.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPV   89 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~   89 (275)
                      |||||||+|+||+++++.|.++|++|++|+|+++.  +.+.+.|+..+.+++++ ++++|+||+||||+.+.+++.++  
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~-~~~~dvIilavkp~~~~~vl~~l--   77 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL-IDQVDLVILGIKPQLFETVLKPL--   77 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH-HHTCSEEEECSCGGGHHHHHTTS--
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhh-hhccceeeeecchHhHHHHhhhc--
Confidence            79999999999999999999999999999999853  34566788888899986 58999999999999999998775  


Q ss_pred             CCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCe
Q 023897           90 HCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCK  169 (275)
Q Consensus        90 ~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  169 (275)
                         +++++++++.+...  .+.+++.++.+.++++.||+.+...+    .+. ..++.....+++..+.++++|+.+| +
T Consensus        78 ---~~~~~iis~~agi~--~~~l~~~l~~~~~ivr~mPN~~~~v~----~g~-~~~~~~~~~~~~~~~~v~~l~~~~G-~  146 (152)
T d2ahra2          78 ---HFKQPIISMAAGIS--LQRLATFVGQDLPLLRIMPNMNAQIL----QSS-TALTGNALVSQELQARVRDLTDSFG-S  146 (152)
T ss_dssp             ---CCCSCEEECCTTCC--HHHHHHHHCTTSCEEEEECCGGGGGT----CEE-EEEEECTTCCHHHHHHHHHHHHTTE-E
T ss_pred             ---ccceeEeccccccc--HHHHHhhhcccccchhhccchhhhcC----ccc-eEEEeCCCCCHHHHHHHHHHHHhCC-C
Confidence               44567777655332  46677777767789999997766543    333 3333333346888999999999999 5


Q ss_pred             EEEcC
Q 023897          170 MLEMS  174 (275)
Q Consensus       170 v~~~~  174 (275)
                      +++++
T Consensus       147 ~~~v~  151 (152)
T d2ahra2         147 TFDIS  151 (152)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            66654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=4.9e-22  Score=156.47  Aligned_cols=153  Identities=20%  Similarity=0.294  Sum_probs=120.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---hc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---NS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~~   86 (275)
                      |||||||+|.||..||+.|.++||+|++|||+++ .+...+.+.....+++++ ++++|+||+|||.. ++.+++   ..
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~-~~~~d~ii~~v~~~~~v~~v~~~~~~   79 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAI-AEQCDVIITMLPNSPHVKEVALGENG   79 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHH-HHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHH-HhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence            7999999999999999999999999999999995 466677788888899986 58999999999854 566776   34


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE  164 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  164 (275)
                      + +.  ++++++++|++++.......+.+.+ ..+.+|+.+ |+.|....  ...|...+++.+   +++.+++++++|+
T Consensus        80 ~~~~--~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pv~gg~~~--a~~g~l~~~~gG---~~~~~~~~~~il~  151 (161)
T d1vpda2          80 IIEG--AKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGEPK--AIDGTLSVMVGG---DKAIFDKYYDLMK  151 (161)
T ss_dssp             HHHH--CCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHH--HHHTCEEEEEES---CHHHHHHHHHHHH
T ss_pred             hhhc--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc-cccCChhH--HhcCCeEEEEcC---CHHHHHHHHHHHH
Confidence            4 55  7899999999998877666666554 446889886 55544321  124555666643   6788999999999


Q ss_pred             HcCCeEEEc
Q 023897          165 SEGCKMLEM  173 (275)
Q Consensus       165 ~~G~~v~~~  173 (275)
                      .+|.+++++
T Consensus       152 ~~~~~i~~~  160 (161)
T d1vpda2         152 AMAGSVVHT  160 (161)
T ss_dssp             TTEEEEEEE
T ss_pred             HhcCceEEC
Confidence            999888775

>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.86  E-value=2.9e-22  Score=146.82  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             ChhHHHHHHHHhhhhHHHHHHHHhhc----ccc---cCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHH
Q 023897          174 SCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ---STSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLD  245 (275)
Q Consensus       174 ~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~  245 (275)
                      +|++||+++|++||+||+++++|+..    ..+   ...++++||||+|||+.++    |+||.+|+..|+.++ +.|+.
T Consensus         1 SPeeHD~~~A~vSHlPHlia~al~~~~~~~~~~~~~~~~~agggfrD~TRiA~s~----p~mW~dI~~~N~~~i~~~l~~   76 (110)
T d2g5ca1           1 SPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSD----PIMWRDIFLENKENVMKAIEG   76 (110)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGGGC---CCSC----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcchHHHHHHcchhHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999988752    111   2468999999999999887    999999999999998 99999


Q ss_pred             HHHHHHHHHHHHhcchhHHHhhc
Q 023897          246 LEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       246 ~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      |++.|+++++.|+++|.+.|.+.
T Consensus        77 ~~~~L~~~~~~l~~~D~~~l~~~   99 (110)
T d2g5ca1          77 FEKSLNHLKELIVREAEEELVEY   99 (110)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999987653

>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.85  E-value=1.2e-21  Score=144.57  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             ChhHHHHHHHHhhhhHHHHHHHHhhccc--c-------cCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHH
Q 023897          174 SCEEHDKVAAKSQFLTHTIGRVLSELEI--Q-------STSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK-QEL  243 (275)
Q Consensus       174 ~~~~hD~~~a~~~~lp~~~a~~l~~~~~--~-------~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l  243 (275)
                      +|++||+++|++||+||+++++|+..-.  +       ...++++||+|+|||+.++    |+||.+|+..|+.++ +.|
T Consensus         1 TPeeHD~~~A~iSHLPHlia~~l~~~~~~~~~~~~~~~~~~~ag~gfrD~tRiA~s~----p~mW~dI~~~N~~~i~~~l   76 (114)
T d2f1ka1           1 TPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVGGGN----PELGTMMATYNQRALLKSL   76 (114)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGGSC----HHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhHHHHHHHHccC----HHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999998876321  1       1358999999999999987    999999999999997 999


Q ss_pred             HHHHHHHHHHHHHHhcchhHHHhh
Q 023897          244 LDLEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       244 ~~~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      +.|++.|+++++.|+++|.+.|++
T Consensus        77 ~~~~~~L~~l~~~l~~~d~~~l~~  100 (114)
T d2f1ka1          77 QDYRQHLDQLITLISNQQWPELHR  100 (114)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999998765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.84  E-value=1.5e-20  Score=146.41  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP   88 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~   88 (275)
                      |||+|||+|+||++|+++|.+.| ++|++|||+++ . ..+.+.|+...++.++ + .++|+||+||||+.+.++++++ 
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v-~~~Div~lavkP~~~~~v~~~l-   77 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-L-HSDDVLILAVKPQDMEAACKNI-   77 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-C-CTTSEEEECSCHHHHHHHHTTC-
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-c-cccceEEEecCHHHHHHhHHHH-
Confidence            79999999999999999998887 89999999985 3 3455678888888776 3 7899999999999999999998 


Q ss_pred             CCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897           89 VHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG  167 (275)
Q Consensus        89 ~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G  167 (275)
                         ...+++++++. +++   .+.+++.++...++++.+|+.+...+    +|...+ +.....+++..+.++++|+.+|
T Consensus        78 ---~~~~~~viS~~ag~~---~~~l~~~l~~~~~iir~mpn~p~~~~----~g~t~~-~~~~~~~~~~~~~v~~l~~~~G  146 (152)
T d1yqga2          78 ---RTNGALVLSVAAGLS---VGTLSRYLGGTRRIVRVMPNTPGKIG----LGVSGM-YAEAEVSETDRRIADRIMKSVG  146 (152)
T ss_dssp             ---CCTTCEEEECCTTCC---HHHHHHHTTSCCCEEEEECCGGGGGT----CEEEEE-ECCTTSCHHHHHHHHHHHHTTE
T ss_pred             ---hhcccEEeecccCCC---HHHHHHHhCcCcceEeecccchhHhc----CCcEEE-EeCCCCCHHHHHHHHHHHHhCC
Confidence               22356676654 433   46778888766788999998776643    454333 3333346778899999999999


Q ss_pred             CeEEEc
Q 023897          168 CKMLEM  173 (275)
Q Consensus       168 ~~v~~~  173 (275)
                       +++++
T Consensus       147 -~~~~v  151 (152)
T d1yqga2         147 -LTVWL  151 (152)
T ss_dssp             -EEEEC
T ss_pred             -CEEEe
Confidence             44443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=3.4e-20  Score=145.91  Aligned_cols=154  Identities=16%  Similarity=0.204  Sum_probs=122.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc--
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS--   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~--   86 (275)
                      |+||||||+|.||++||+.|.++||+|.+|||++. .+.....+.....++.+. ...+|+|++|+|... ..+++..  
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~-~~~~diii~~v~~~~~~~~v~~~~~   79 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA-VQGADVVISMLPASQHVEGLYLDDD   79 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH-HTSCSEEEECCSCHHHHHHHHHSTT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhh-ccccCeeeecccchhhHHHHHhccc
Confidence            57899999999999999999999999999999985 456677788877888886 589999999999875 4556554  


Q ss_pred             -C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897           87 -L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF  163 (275)
Q Consensus        87 -l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  163 (275)
                       + +.  +.++++++|++++.......+.+.+ ..+..|+.+ |++|....  ...|...+++.+   +++.+++++++|
T Consensus        80 ~~~~~--l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~da-pv~Gg~~~--a~~G~l~~~~gG---~~~~~~~~~~il  151 (162)
T d3cuma2          80 GLLAH--IAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA-PVSGGTAG--AAAGTLTFMVGG---DAEALEKARPLF  151 (162)
T ss_dssp             CHHHH--SCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESCHHH--HHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred             ccccc--CCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEec-ccccCccc--cccCCeEEEecC---CHHHHHHHHHHH
Confidence             3 44  7889999999999887777776665 356889975 77665432  125655666643   678899999999


Q ss_pred             HHcCCeEEEc
Q 023897          164 ESEGCKMLEM  173 (275)
Q Consensus       164 ~~~G~~v~~~  173 (275)
                      +.+|.+++++
T Consensus       152 ~~~~~~v~~~  161 (162)
T d3cuma2         152 EAMGRNIFHA  161 (162)
T ss_dssp             HHHEEEEEEE
T ss_pred             HHHcCccEEC
Confidence            9999888765

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.1e-19  Score=139.91  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCCCC
Q 023897           14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVHC   91 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~~~   91 (275)
                      |||||+|+||++|+.+|++.++.+.+|+|+++ .+ .+.+.+.. ..+++++ ++++|+||+|||++.+.+++.++    
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~~~-~~~~DiVil~v~d~~i~~v~~~l----   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK-AATLEKH-PELNGVVFVIVPDRYIKTVANHL----   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC-CCSSCCC-CC---CEEECSCTTTHHHHHTTT----
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc-ccchhhh-hccCcEEEEeccchhhhHHHhhh----
Confidence            79999999999999999876555568999985 33 44444444 3466664 58999999999999999999987    


Q ss_pred             CCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEE
Q 023897           92 LQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKML  171 (275)
Q Consensus        92 l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~  171 (275)
                      -.++++++|+++....  +.++     .....+.||+..+............+++...+ |++.++.++++|+.+|.+++
T Consensus        76 ~~~~~ivi~~s~~~~~--~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-d~~~~~~~~~l~~~lG~~~~  147 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS--EIFK-----KSGRASIHPNFSFSSLEKALEMKDQIVFGLEG-DERGLPIVKKIAEEISGKYF  147 (153)
T ss_dssp             CCSSCCEEECCSSSCG--GGGC-----SSSEEEEEECSCC--CTTGGGCGGGCCEEECC-CTTTHHHHHHHHHHHCSCEE
T ss_pred             cccceeeeecccchhh--hhhh-----hhccccceeeeecccccchhhhccCcEEEEeC-CHHHHHHHHHHHHHHCCcEE
Confidence            2367899998876542  2222     23345668877665432221111122222223 67789999999999999999


Q ss_pred             EcChhH
Q 023897          172 EMSCEE  177 (275)
Q Consensus       172 ~~~~~~  177 (275)
                      ++++++
T Consensus       148 ~i~~ek  153 (153)
T d2i76a2         148 VIPSEK  153 (153)
T ss_dssp             ECCGGG
T ss_pred             EeCCCC
Confidence            998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=2e-18  Score=134.22  Aligned_cols=148  Identities=14%  Similarity=0.164  Sum_probs=106.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-CC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-PV   89 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~~   89 (275)
                      |||||||+|+||+++|+.|.++||+|++|++++. .......+.....+++++ ++++|+||+|||++...+++.+. +.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~diIi~~v~~~~~~~~~~~~~~~   79 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEED-VYSCPVVISAVTPGVALGAARRAGRH   79 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHH-HHTSSEEEECSCGGGHHHHHHHHHTT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHH-HhhcCeEEEEecCchHHHHHHhhccc
Confidence            7999999999999999999999999999998773 333333344445667786 58999999999999988888887 54


Q ss_pred             CCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCe
Q 023897           90 HCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCK  169 (275)
Q Consensus        90 ~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  169 (275)
                        +  +.+++|+++......+.+.+.++. ..|+.. |+.|+...  ...+.+ +++.+  .+.+.   +. .++.+|.+
T Consensus        80 --~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~-~v~g~~~~--~~~~~~-~~~~G--~~~~~---~~-~l~~~g~~  144 (152)
T d1i36a2          80 --V--RGIYVDINNISPETVRMASSLIEK-GGFVDA-AIMGSVRR--KGADIR-IIASG--RDAEE---FM-KLNRYGLN  144 (152)
T ss_dssp             --C--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEE-EECSCHHH--HGGGCE-EEEES--TTHHH---HH-GGGGGTCE
T ss_pred             --C--CceeeccCcCCHHHHHHHHHHHhc-cCCCcc-cccCCccc--ccCCcE-EEEEC--CCHHH---HH-HHHHcCCe
Confidence              3  578999999888778888888754 457765 44444321  112333 44432  23333   32 36789988


Q ss_pred             EEEcCh
Q 023897          170 MLEMSC  175 (275)
Q Consensus       170 v~~~~~  175 (275)
                      +.++.+
T Consensus       145 i~~~G~  150 (152)
T d1i36a2         145 IEVRGR  150 (152)
T ss_dssp             EEECSS
T ss_pred             eeEcCC
Confidence            888754

>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=4e-18  Score=128.45  Aligned_cols=91  Identities=12%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             ChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHH----HHHHhhcCCCCChhhHHHHHHHCHHHHHH
Q 023897          174 SCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFET----LIRLKESSVNDSFDLFSGLYIHNRFAKQE  242 (275)
Q Consensus       174 ~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~----~~rl~~~~~~~~p~~~~~i~~~N~~~~~~  242 (275)
                      ++++||+++|++|||||+++.+|+..    +.+.   ..+++++|++    ++||+.++    |+||.+|+..|+++.+.
T Consensus         1 da~eHD~~~A~ishLpH~~~~al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa~~~----p~lw~dI~~~N~~~~~~   76 (128)
T d2pv7a1           1 NATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQD----AELYADIIMDKSENLAV   76 (128)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSC----HHHHHHHHC----CHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHHCCC----HHHHHHHHHHCHHHHHH
Confidence            57899999999999999999888763    3331   4689999985    57777665    99999999999998899


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897          243 LLDLEAAFEKVKHKLQQKMEEVQLEQ  268 (275)
Q Consensus       243 l~~~~~~l~~~~~~l~~~~~~~~~~~  268 (275)
                      +++|.+.|+++++.|+.+|.+.|.+.
T Consensus        77 l~~~~~~l~~l~~~i~~~D~~~l~~~  102 (128)
T d2pv7a1          77 IETLKQTYDEALTFFENNDRQGFIDA  102 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.69  E-value=6.3e-17  Score=129.10  Aligned_cols=155  Identities=15%  Similarity=0.207  Sum_probs=110.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHc------C-------ceEecChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRS------G-------ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~------g-------~~~~~~~~~~~~~~aD~iilav   75 (275)
                      |||+|||+|.||+++|..|.++|++|.+|.|+.+.   ....+.      +       +..+++++++ ++++|+|++||
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC-LENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH-HTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHH-Hhccchhhccc
Confidence            89999999999999999999999999999985432   111111      1       1345677776 58999999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCCCC-----C-hhHHHHHHhhCCCC-CceeecCCCCCCCCCcCCccccceeeee
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVLSV-----K-EYPRNVLLQVLPEE-MDVLCTHPMFGPESGQNGWKDFAFVYEK  147 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~s~-----k-~~~~~~l~~~l~~~-~~~v~~hP~~g~~~~~~~~~g~~~~~~~  147 (275)
                      |.+.++++++++ ++  ++++.+++.+.+.     + ....+.+.+..+.. ..+.   -+.||..+.|...+.|...+.
T Consensus        80 ps~~~~~~~~~l~~~--l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~---vlsGP~~A~Ei~~~~pt~~vi  154 (180)
T d1txga2          80 STDGVLPVMSRILPY--LKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTV---AITGPAIAREVAKRMPTTVVF  154 (180)
T ss_dssp             CGGGHHHHHHHHTTT--CCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEE---EEESSCCHHHHHTTCCEEEEE
T ss_pred             chhhhHHHHHhhccc--cccceecccccCccccccccccchHHHHhhhccccccee---EEcCCccHHHHHcCCCcEEEE
Confidence            999999999999 87  7777666643332     1 11344555544321 1111   246888877777888766554


Q ss_pred             eecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          148 VRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      . +.+.+..+.++++|+.-.+++|..
T Consensus       155 a-s~~~~~a~~i~~~f~~~~frvy~S  179 (180)
T d1txga2         155 S-SPSESSANKMKEIFETEYFGVEVT  179 (180)
T ss_dssp             E-CSCHHHHHHHHHHHCBTTEEEEEE
T ss_pred             E-cCCHHHHHHHHHHHCCCCEEEEeC
Confidence            3 347788899999999988898874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.68  E-value=1.4e-17  Score=132.48  Aligned_cols=151  Identities=16%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc-----eE---ecChHHHhccCCCEEEEecCch-hH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI-----SF---FSDKRAFLEADNDVILISTSIL-SL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~-----~~---~~~~~~~~~~~aD~iilavp~~-~~   80 (275)
                      +.+|||||+|+||..||+.|.++||+|++|||+++. +...+.+.     ..   ..++.+. +..+|.+++++|.. .+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK-LKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHH-BCSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhh-hcccceEEEecCchHHH
Confidence            458999999999999999999999999999999853 33333322     12   2334443 47899999999885 56


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHH
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSS  158 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (275)
                      .++.+.+ +.  ++++++++|++++.......+.+.+ +.+..|+. .|+.|....  ...|. .++..+   +++.+++
T Consensus        81 ~~v~~~l~~~--~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld-apvsGg~~~--A~~G~-~~~~gG---~~~~~~~  151 (176)
T d2pgda2          81 DNFIEKLVPL--LDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDG--ARYGP-SLMPGG---NKEAWPH  151 (176)
T ss_dssp             HHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHH--HHHCC-EEEEEE---CTTTHHH
T ss_pred             HHHHHHHHhc--cccCcEEEecCcchhHHHHHHHHHHHhcCCceec-cccccCccc--ccCCc-EEEcCC---CHHHHHH
Confidence            7888888 76  8899999999998877665554443 35678886 577766532  12455 555432   6778999


Q ss_pred             HHHHHHHcCCeEE
Q 023897          159 FLRIFESEGCKML  171 (275)
Q Consensus       159 ~~~l~~~~G~~v~  171 (275)
                      ++.+|+.++.++.
T Consensus       152 ~~~il~~~~~kv~  164 (176)
T d2pgda2         152 IKAIFQGIAAKVG  164 (176)
T ss_dssp             HHHHHHHHSCBCT
T ss_pred             HHHHHHHHhcccC
Confidence            9999999998763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.68  E-value=2.5e-17  Score=132.32  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=110.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH--------------cCceEecChHHHhccCCCEEEE
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR--------------SGISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~--------------~g~~~~~~~~~~~~~~aD~iil   73 (275)
                      +.|+||+|||+|.||+++|..|.++|++|++|+|+++. +...+              .++.++++++++ ++++|+||+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a-~~~ad~iii   83 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA-YNGAEIILF   83 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH-HTTCSCEEE
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhc-cCCCCEEEE
Confidence            45568999999999999999999999999999999853 21111              124678888886 589999999


Q ss_pred             ecCchhHHHHhhcC-CCC---CCCCCcEEEeCC-CC----ChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897           74 STSILSLSEVLNSL-PVH---CLQRRTLIADVL-SV----KEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV  144 (275)
Q Consensus        74 avp~~~~~~v~~~l-~~~---~l~~~~iv~d~~-s~----k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~  144 (275)
                      |||.+.++++++++ ++.   .++++..++.++ +.    ...+.+.+.+.++.. .+ +  -+.||..+.|..++.|+.
T Consensus        84 avPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~-~~-~--vlsGP~~A~Ev~~~~pt~  159 (189)
T d1n1ea2          84 VIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSP-LL-S--VLAGPSFAIEVATGVFTC  159 (189)
T ss_dssp             CSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGG-GE-E--EEESSCCHHHHHTTCCEE
T ss_pred             cCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhccc-ce-E--EEecCCcHHHHHcCCCcE
Confidence            99999999999886 420   023344454432 11    122445566665432 21 1  146888877777888877


Q ss_pred             eeeeecCChHHHHHHHHHHHHc--CCeEEE
Q 023897          145 YEKVRIRDEATCSSFLRIFESE--GCKMLE  172 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~l~~~~--G~~v~~  172 (275)
                      ++-. +.+.+..+.++++|+..  .+++|.
T Consensus       160 ~viA-s~~~~~a~~i~~lfst~~~~frvy~  188 (189)
T d1n1ea2         160 VSIA-SADINVARRLQRIMSTGDRSFVCWA  188 (189)
T ss_dssp             EEEE-CSSHHHHHHHHHHHSCTTSSEEEEE
T ss_pred             EEEE-eCCHHHHHHHHHHhCCCCCCEEEec
Confidence            6643 44788889999999853  367664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=122.74  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=118.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------Hc------------------CceEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RS------------------GISFFSD   59 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~------------------g~~~~~~   59 (275)
                      ...||+|||+|.||+++|..++.+|++|++||++++ .+.+.           +.                  .+..+++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            447999999999999999999999999999999984 22111           11                  1246677


Q ss_pred             hHHHhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC
Q 023897           60 KRAFLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN  136 (275)
Q Consensus        60 ~~~~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~  136 (275)
                      ..++ +.++|+|+-|+|.+.  -.+++.++ +.  +++++++...+|.-.  ...+.+.+....+|++.|+..++...  
T Consensus        83 ~~~a-~~~ad~ViEav~E~l~~K~~v~~~l~~~--~~~~~ilasnTS~l~--i~~la~~~~~p~r~ig~HffnP~~~~--  155 (192)
T d1f0ya2          83 AASV-VHSTDLVVEAIVENLKVKNELFKRLDKF--AAEHTIFASNTSSLQ--ITSIANATTRQDRFAGLHFFNPVPVM--  155 (192)
T ss_dssp             HHHH-TTSCSEEEECCCSCHHHHHHHHHHHTTT--SCTTCEEEECCSSSC--HHHHHTTSSCGGGEEEEEECSSTTTC--
T ss_pred             hHhh-hcccceehhhcccchhHHHHHHHHHhhh--cccCceeeccCcccc--cchhhhhccCHhHEEeeccccccCcc--
Confidence            7775 489999999999963  35888888 66  888999987666433  45667766666799999998777642  


Q ss_pred             CccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897          137 GWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS  174 (275)
Q Consensus       137 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~  174 (275)
                          ..+-++++..++++.++.+.++++.+|..++.+.
T Consensus       156 ----~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~  189 (192)
T d1f0ya2         156 ----KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK  189 (192)
T ss_dssp             ----CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ----cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence                2344455666789999999999999999988763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.64  E-value=2.9e-15  Score=119.87  Aligned_cols=153  Identities=11%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----------cC-------------ceEecChHHH
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----------SG-------------ISFFSDKRAF   63 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----------~g-------------~~~~~~~~~~   63 (275)
                      ....||+|||+|.||+++|..++.+|++|++||++++ .+.+.+           .+             +..+++.++ 
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-   80 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-   80 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-
Confidence            3457899999999999999999999999999999984 222111           11             234555555 


Q ss_pred             hccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897           64 LEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD  140 (275)
Q Consensus        64 ~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g  140 (275)
                       +.++|+|+-|+|.+.  -.+++.++ +.  +++++|+...+|.-.  ...+.+.+....+|++.|+..++...      
T Consensus        81 -~~~adlViEav~E~l~~K~~lf~~l~~~--~~~~~IiaSnTS~l~--i~~la~~~~~p~r~~g~Hf~nP~~~~------  149 (186)
T d1wdka3          81 -FGNVDLVVEAVVENPKVKQAVLAEVENH--VREDAILASNTSTIS--ISLLAKALKRPENFVGMHFFNPVHMM------  149 (186)
T ss_dssp             -GGGCSEEEECCCSCHHHHHHHHHHHHTT--SCTTCEEEECCSSSC--HHHHGGGCSCGGGEEEEECCSSTTTC------
T ss_pred             -ccccceeeeeecchHHHHHHHHHHHHhh--cCCCeeEEecccccc--HHHHHHhccCchheEeeccccCcccC------
Confidence             379999999999974  35788888 77  889999987666433  46677777666799999997666532      


Q ss_pred             cceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      ..+=++++..++++.++.+.++++.+|..++++
T Consensus       150 ~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v  182 (186)
T d1wdka3         150 PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV  182 (186)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            123244555678899999999999999998876

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.62  E-value=6.9e-16  Score=122.63  Aligned_cols=151  Identities=18%  Similarity=0.216  Sum_probs=107.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc--------eEecChHHH--hccCCCEEEEecCch-h
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI--------SFFSDKRAF--LEADNDVILISTSIL-S   79 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~--------~~~~~~~~~--~~~~aD~iilavp~~-~   79 (275)
                      |||||||+|+||..||+.|.++||+|++|||+++. +...+.+.        ....+.+..  .+..++.+++++++. .
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            79999999999999999999999999999999853 33323222        222232221  125677788887765 4


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHH
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCS  157 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (275)
                      ...++..+ ..  +.++++++|+++........+.+.+ ..+..|+.. |++|...+.  ..|. .+++.+   +++.++
T Consensus        82 ~~~~~~~~~~~--~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda-pv~g~~~~a--~~g~-~~mvgG---~~~~~~  152 (178)
T d1pgja2          82 TDSTIEQLKKV--FEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM-GISGGEEGA--RKGP-AFFPGG---TLSVWE  152 (178)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE-EEESHHHHH--HHCC-EEEEEE---CHHHHH
T ss_pred             hhhhhhhhhhh--ccccceecccCccchhHHHHHHHHHhhcceeEecc-cccCCcchh--cCCc-EEEeeC---CHHHHH
Confidence            56777777 65  7889999999988877666666654 445778874 777754321  2344 455533   688999


Q ss_pred             HHHHHHHHcCCeEE
Q 023897          158 SFLRIFESEGCKML  171 (275)
Q Consensus       158 ~~~~l~~~~G~~v~  171 (275)
                      +++++|+.++.++.
T Consensus       153 ~v~pil~~~~~~~~  166 (178)
T d1pgja2         153 EIRPIVEAAAAKAD  166 (178)
T ss_dssp             HHHHHHHHHSCBCT
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999998764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.4e-16  Score=121.22  Aligned_cols=150  Identities=21%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-C
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-P   88 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~   88 (275)
                      ||||||+|+||..||++|.++|+.+ +|+|++. . ....+.+. .....+.  +.++|++|+++|... +..+...+ +
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~~~~~~v~~~~~~l~~   77 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGS-EAVPLER--VAEARVIFTCLPTTREVYEVAEALYP   77 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCC-EECCGGG--GGGCSEEEECCSSHHHHHHHHHHHTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCC-ccccccc--ccceeEEEecccchhhhhhhhccccc
Confidence            7999999999999999999999866 6777764 3 33333343 3344444  368999999999864 45666666 6


Q ss_pred             CCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897           89 VHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG  167 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G  167 (275)
                      .  +.++.+++|++++.....+.+.+.+ ..+.+|+. .|++|....  ...|...+++.+   +++.+++++.+| .++
T Consensus        78 ~--~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ld-apVsGg~~~--A~~G~L~~~vgG---~~~~~~~~~p~L-~~~  148 (156)
T d2cvza2          78 Y--LREGTYWVDATSGEPEASRRLAERLREKGVTYLD-APVSGGTSG--AEAGTLTVMLGG---PEEAVERVRPFL-AYA  148 (156)
T ss_dssp             T--CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE-CCEESHHHH--HHHTCEEEEEES---CHHHHHHHGGGC-TTE
T ss_pred             c--ccccccccccccCCHHHHHHHHHHHHHcCCeEEe-ccccCchhh--hccCCEEEEEeC---CHHHHHHHHHHH-Hhc
Confidence            6  7899999999998877766666655 34678887 488876542  225665666643   788999999999 488


Q ss_pred             CeEEEcCh
Q 023897          168 CKMLEMSC  175 (275)
Q Consensus       168 ~~v~~~~~  175 (275)
                      .+++++.|
T Consensus       149 ~~v~~~GP  156 (156)
T d2cvza2         149 KKVVHVGP  156 (156)
T ss_dssp             EEEEEEES
T ss_pred             CcCEEeCc
Confidence            88887754

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=3.2e-16  Score=129.40  Aligned_cols=152  Identities=11%  Similarity=0.147  Sum_probs=118.6

Q ss_pred             CeEEEEcCCh--HHHHHHH------HHHHCCCeEEEEcCChh-h-hHH--------------------H-----------
Q 023897           12 LKIGIIGFGP--FGQFLAK------TMIKQGHILRATSRTDH-S-QLC--------------------H-----------   50 (275)
Q Consensus        12 ~~I~IIG~G~--mG~sla~------~L~~~g~~V~~~dr~~~-~-~~a--------------------~-----------   50 (275)
                      .++.++|+|+  ||..++.      +|++.|+.|++.|.+++ . +..                    +           
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4577889887  7777766      68899999999888852 1 110                    0           


Q ss_pred             -----HcCceEecChHHHhccCCCEEEEecCch-hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCce
Q 023897           51 -----RSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDV  122 (275)
Q Consensus        51 -----~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~  122 (275)
                           +.|+++++++.++ ++++|+||+|+|.. ...++++++ ++  ++++++++|++|++......+.+.+. .+.+|
T Consensus       121 ~~~pEe~Gv~v~~d~~Ea-v~~ADiII~~vP~~~~v~~Vi~~I~~~--l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREA-VEGADIVITWLPKGNKQPDIIKKFADA--IPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             SSCGGGGTCEEESCHHHH-HTTCSEEEECCTTCTTHHHHHHHHGGG--SCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cCCHHHCCCEEECCHHHH-HhcCCeEEEeeecHHHHHHHHHHHHhh--CCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence                 0245678899997 59999999999875 578899999 87  99999999999999888777777664 46789


Q ss_pred             eecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          123 LCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       123 v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      ++.||+++|+..     +...+...  ..+++.++++.++|+++|..++++
T Consensus       198 i~~hp~a~pe~~-----g~~li~~~--~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         198 TSYHPGCVPEMK-----GQVYIAEG--YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             EECBCSSCTTTC-----CCEEEEES--SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             ECCCccCcCccc-----cceEEecC--CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999999999753     33333332  347889999999999999988875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.49  E-value=1.6e-13  Score=108.79  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcC---------------ceEecChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSG---------------ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g---------------~~~~~~~~~~~~~~aD~iilav   75 (275)
                      +||+|||+|.||.++|..|+++||+|++|+|+++ .+...+.+               ...++++.++ ++++|+||+||
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-VKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-HTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH-hcCCCEEEEEE
Confidence            6999999999999999999999999999999985 33333322               1346778886 48999999999


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEEEeCCCCCh
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~  106 (275)
                      |.....++++++ ++  +.++++++...+...
T Consensus        81 ~~~~~~~~~~~i~~~--l~~~~~iv~~~g~~~  110 (184)
T d1bg6a2          81 PAIHHASIAANIASY--ISEGQLIILNPGATG  110 (184)
T ss_dssp             CGGGHHHHHHHHGGG--CCTTCEEEESSCCSS
T ss_pred             chhHHHHHHHHhhhc--cCCCCEEEEeCCCCc
Confidence            999999999999 88  889998887655443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=3.2e-13  Score=109.19  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHH---------------------cCceEecChHHHhccCCCE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHR---------------------SGISFFSDKRAFLEADNDV   70 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~---------------------~g~~~~~~~~~~~~~~aD~   70 (275)
                      |||+|||+|.+|.++|..|+++|++|++||.+++......                     .....+++..++ +.++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~d~   79 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKA-VLDSDV   79 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH-HHTCSE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHH-HhhCCE
Confidence            8999999999999999999999999999999875322111                     122567788886 489999


Q ss_pred             EEEecCch----------hHHHHhhcC----CCCCCCCCcEEEeCCCCChhHHHHH-----HhhCC--CCC-ceeecCCC
Q 023897           71 ILISTSIL----------SLSEVLNSL----PVHCLQRRTLIADVLSVKEYPRNVL-----LQVLP--EEM-DVLCTHPM  128 (275)
Q Consensus        71 iilavp~~----------~~~~v~~~l----~~~~l~~~~iv~d~~s~k~~~~~~l-----~~~l~--~~~-~~v~~hP~  128 (275)
                      +|+|||..          .+..+++.+    ..  ..++++++..+++.....+.+     .+...  .+. ..+...|-
T Consensus        80 i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE  157 (202)
T d1mv8a2          80 SFICVGTPSKKNGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (202)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEecCccccccccccchhhhhhhhhhhheeec--ccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhh
Confidence            99999973          233333333    33  557778877777665444332     22111  111 23444554


Q ss_pred             CCCCC-CcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897          129 FGPES-GQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM  173 (275)
Q Consensus       129 ~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~  173 (275)
                      +-.+- +-..+...+.++.+.  .+++..+.++++++.+...++.+
T Consensus       158 ~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii~~  201 (202)
T d1mv8a2         158 FLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIRK  201 (202)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEEE
T ss_pred             hhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeEec
Confidence            33221 111233344444443  36778899999999998877654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.5e-12  Score=101.40  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=67.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc-------eEecChHHHhccCCCEEEEecCchhHHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI-------SFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~-------~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      |||+|||+|.||+.+|..|++.|++|++++|++.. ......+.       ....+..+. ...+|+||+|||...+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~iii~vka~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF-LATSDLLLVTLKAWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHH-HHTCSEEEECSCGGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhh-hcccceEEEeecccchHHH
Confidence            89999999999999999999999999999999742 11111111       222233343 3799999999999999999


Q ss_pred             hhcC-CCCCCCCCcEEEeCC
Q 023897           84 LNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        84 ~~~l-~~~~l~~~~iv~d~~  102 (275)
                      ++.+ +.  +.++++++.+.
T Consensus        80 ~~~l~~~--~~~~~~Iv~~q   97 (167)
T d1ks9a2          80 VKSLAST--LPVTTPILLIH   97 (167)
T ss_dssp             HHHHHTT--SCTTSCEEEEC
T ss_pred             HHhhccc--cCcccEEeecc
Confidence            9999 77  77888777654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=2.9e-09  Score=84.79  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcC-------------------ceEecChHHHhccCCCEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSG-------------------ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g-------------------~~~~~~~~~~~~~~aD~ii   72 (275)
                      |||+|||+|.+|..+|..|+ .|++|++||.+++.....+.|                   .....+.... ..++|+++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ii~   78 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA-YKEAELVI   78 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH-HHHCSEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhh-hhcccccc
Confidence            89999999999999998886 599999999998532222211                   2334455443 36899999


Q ss_pred             EecCch-----------hHHHHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           73 ISTSIL-----------SLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        73 lavp~~-----------~~~~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +|||..           .+..+...+..  ..++.+++--+++.....+.+.+.+.
T Consensus        79 v~vpt~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~iii~Stv~pgt~~~~~~~~~  132 (196)
T d1dlja2          79 IATPTNYNSRINYFDTQHVETVIKEVLS--VNSHATLIIKSTIPIGFITEMRQKFQ  132 (196)
T ss_dssp             ECCCCCEETTTTEECCHHHHHHHHHHHH--HCSSCEEEECSCCCTTHHHHHHHHTT
T ss_pred             ccCCccccccCCCcceeEEeehhhhhhh--cccceeEEeeeecCceeeeeeeeccc
Confidence            999983           23334444411  34566776666676666677766654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.90  E-value=1.4e-09  Score=86.57  Aligned_cols=93  Identities=14%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~   86 (275)
                      ....++|||||+|++|+.+|+.+...|.+|.+||+..........++....+++++ ++.+|+|++++|-.. ...++..
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~l-l~~sD~i~~~~plt~~T~~li~~  124 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDL-LFHSDCVTLHCGLNEHNHHLIND  124 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHH-HHHCSEEEECCCCCTTCTTSBSH
T ss_pred             eeeCceEEEeccccccccceeeeeccccceeeccCcccccchhhhccccccchhhc-cccCCEEEEeecccccchhhhhH
Confidence            45678999999999999999999999999999999875444455577777889996 589999999999642 3333321


Q ss_pred             --CCCCCCCCCcEEEeCCC
Q 023897           87 --LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 --l~~~~l~~~~iv~d~~s  103 (275)
                        +..  ++++.++++++-
T Consensus       125 ~~l~~--mk~~a~lIN~sR  141 (193)
T d1mx3a1         125 FTVKQ--MRQGAFLVNTAR  141 (193)
T ss_dssp             HHHTT--SCTTEEEEECSC
T ss_pred             HHHhc--cCCCCeEEecCC
Confidence              133  788999999874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.87  E-value=5.5e-09  Score=79.22  Aligned_cols=91  Identities=14%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhh--HHHH-------c--CceEecChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQ--LCHR-------S--GISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~--~a~~-------~--g~~~~~~~~~~~~~~aD~iila   74 (275)
                      ++..|||+|||+|.+|.++|..|+..|  .+|.++|++++..  .+.+       .  ......+.++ + ++||+|+++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~-~~adivvit   79 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-C-KDADLVVIT   79 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-G-TTCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-h-ccccEEEEe
Confidence            356789999999999999999999988  4899999998532  2211       1  1234556666 3 899999998


Q ss_pred             cCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           75 TSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        75 vp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ....                .+.++..++ .   ..++.+++.+++
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~---~~p~aivivvtN  122 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVD---SGFDGIFLVAAN  122 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHH---TTCCSEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhh---cCCCcEEEEeCC
Confidence            6542                234555555 3   245566665554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.78  E-value=4.6e-09  Score=82.60  Aligned_cols=87  Identities=14%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS-   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~-   86 (275)
                      ...++|+|||+|.+|..+|+.+...|.+|++|||++..     .......+++++ ++++|+|++++|-. ....++.+ 
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-----~~~~~~~~l~el-l~~sDiv~~~~pl~~~t~~li~~~  113 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-----GPWRFTNSLEEA-LREARAAVCALPLNKHTRGLVKYQ  113 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-----SSSCCBSCSHHH-HTTCSEEEECCCCSTTTTTCBCHH
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccccc-----cceeeeechhhh-hhccchhhcccccccccccccccc
Confidence            46789999999999999999999999999999998632     112334678886 59999999999974 23333322 


Q ss_pred             C-CCCCCCCCcEEEeCCC
Q 023897           87 L-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s  103 (275)
                      . ..  ++++.++++++-
T Consensus       114 ~l~~--mk~~ailIN~~R  129 (181)
T d1qp8a1         114 HLAL--MAEDAVFVNVGR  129 (181)
T ss_dssp             HHTT--SCTTCEEEECSC
T ss_pred             eeee--ccccceEEeccc
Confidence            1 33  788999999874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.74  E-value=8.6e-09  Score=81.58  Aligned_cols=107  Identities=13%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN   85 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~   85 (275)
                      ....++|||||+|++|..+|+.|+..|.+|.+||+... .......+.....++++. ++++|+|++++|-.. ...++.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~-l~~sD~v~~~~plt~~T~~li~  119 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDM-YPVCDVVTLNCPLHPETEHMIN  119 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHH-GGGCSEEEECSCCCTTTTTCBS
T ss_pred             eccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHH-HHhccchhhcccccccchhhhH
Confidence            34668999999999999999999999999999998763 344455567777888886 589999999999643 334433


Q ss_pred             cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                      +=  ..  ++++.+++.++--.....+.+.+.+.
T Consensus       120 ~~~l~~--mk~ga~lIN~aRG~ivd~~aL~~aL~  151 (188)
T d2naca1         120 DETLKL--FKRGAYIVNTARGKLCDRDAVARALE  151 (188)
T ss_dssp             HHHHTT--SCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHHHHh--CCCCCEEEecCchhhhhHHHHHHHHh
Confidence            21  44  78999999987533222234444443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=1.2e-08  Score=80.40  Aligned_cols=106  Identities=14%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ....++++|||+|.+|+.+|+.+...|.+|.+||+..........++.. .+++++ ++.||+|++++|-. .+..++.+
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~-~~l~el-l~~sDiv~~~~Plt~~T~~lin~  118 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDL-LARADFISVHLPKTPETAGLIDK  118 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHH-HHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhcCcee-ccHHHH-HhhCCEEEEcCCCCchhhhhhhH
Confidence            3466899999999999999999999999999999887544445556654 578886 58999999999964 34444432


Q ss_pred             -C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897           87 -L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP  117 (275)
Q Consensus        87 -l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~  117 (275)
                       . ..  ++++.++++++--.....+.+.+.+.
T Consensus       119 ~~l~~--mk~~a~lIN~sRG~iVde~aL~~aL~  149 (184)
T d1ygya1         119 EALAK--TKPGVIIVNAARGGLVDEAALADAIT  149 (184)
T ss_dssp             HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             HHHhh--hCCCceEEEecchhhhhhHHHHHHHh
Confidence             1 44  78999999987433222344544443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.69  E-value=1.5e-08  Score=80.21  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~   86 (275)
                      ...++|||||+|++|+.+|+.+...|.+|.+||+... .......+.....+++++ ++.+|+|++++|-. .+..++.+
T Consensus        45 l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~l-l~~sD~v~l~~plt~~T~~li~~  123 (191)
T d1gdha1          45 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSL-LSVSQFFSLNAPSTPETRYFFNK  123 (191)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHH-HHHCSEEEECCCCCTTTTTCBSH
T ss_pred             ecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHH-HhhCCeEEecCCCCchHhheecH
Confidence            3468999999999999999999999999999998764 333333444555788886 58999999999974 33444432


Q ss_pred             C--CCCCCCCCcEEEeCCC
Q 023897           87 L--PVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 l--~~~~l~~~~iv~d~~s  103 (275)
                      -  ..  ++++.++++++-
T Consensus       124 ~~l~~--mk~~a~lIN~sR  140 (191)
T d1gdha1         124 ATIKS--LPQGAIVVNTAR  140 (191)
T ss_dssp             HHHTT--SCTTEEEEECSC
T ss_pred             HHhhC--cCCccEEEecCC
Confidence            2  34  789999999874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.68  E-value=9.5e-08  Score=71.87  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhhH--HHH-------cC----ceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQL--CHR-------SG----ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~~--a~~-------~g----~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.+|+++|..|..+|.  ++.++|++++...  +.+       .+    +....+.++  ++++|+|+++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~--~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL--LKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGG--GTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHH--hccccEEEEecc
Confidence            799999999999999999998874  7999999985422  111       11    133456655  389999999875


Q ss_pred             c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                ..+.++.+.+ .   ..++.+++.+++
T Consensus        79 ~~~~~g~~r~~l~~~n~~i~~~i~~~i~~---~~p~aivivvtN  119 (142)
T d1ojua1          79 LARKPGMTRLDLAHKNAGIIKDIAKKIVE---NAPESKILVVTN  119 (142)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHT---TSTTCEEEECSS
T ss_pred             ccCCCCCchHHHHHHhhHHHHHHHHHHHh---hCCCcEEEEecC
Confidence            3                1244555566 4   346677777765

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.66  E-value=4.5e-08  Score=77.61  Aligned_cols=155  Identities=14%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC------CeEEEEcCCh--hhhHHHHcCceE----ecChHHHhccCCCEEEEecCchh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG------HILRATSRTD--HSQLCHRSGISF----FSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g------~~V~~~dr~~--~~~~a~~~g~~~----~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      +||+|||+|.-|.+-|..|++.|      .+|++--|..  ..+.|++.|...    .-+.+|+ ++++|+|++.+|+..
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EA-v~~ADiVmiLlPDe~  123 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWET-ISGSDLVLLLISDSA  123 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHH-HHTCSEEEECSCHHH
T ss_pred             CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHH-HhhCCEEEEecchHH
Confidence            68999999999999999999954      5677665554  346788888752    2345665 489999999999999


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCC-CCc-----C--Cccccceeeeeeec
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPE-SGQ-----N--GWKDFAFVYEKVRI  150 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~-~~~-----~--~~~g~~~~~~~~~~  150 (275)
                      -.++.+++ |+  +++|..+.-.-+......+.+.-..|.++.++-..|-.+.. ...     .  .-.|.|.++.-..-
T Consensus       124 Q~~vy~~I~p~--Lk~G~~L~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD  201 (226)
T d1qmga2         124 QADNYEKVFSH--MKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQD  201 (226)
T ss_dssp             HHHHHHHHHHH--SCTTCEEEESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEEC
T ss_pred             HHHHHHHHHHh--cCCCceeeecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEEC
Confidence            99999999 88  99999887544421111111111235566666333422111 000     0  01267776654332


Q ss_pred             CChHHHHHHHHHHHHcCCe
Q 023897          151 RDEATCSSFLRIFESEGCK  169 (275)
Q Consensus       151 ~~~~~~~~~~~l~~~~G~~  169 (275)
                      .+..+.+....+...+|+-
T Consensus       202 ~sG~A~~~alayA~aIG~g  220 (226)
T d1qmga2         202 VDGRATDVALGWSIALGSP  220 (226)
T ss_dssp             SSSCHHHHHHHHHHHHTCS
T ss_pred             CCCcHHHHHHHHHHhCCCC
Confidence            3556778888888888854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.65  E-value=1.3e-07  Score=71.57  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceE-ecChHHHhccCCCEEEEe
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISF-FSDKRAFLEADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~-~~~~~~~~~~~aD~iila   74 (275)
                      ....||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+         ..... ..+.++  +++||+|+++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~--l~daDvvvit   81 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD--CRDADLVVIC   81 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG--TTTCSEEEEC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH--hccceeEEEe
Confidence            445799999999999999999999885  899999998532  2211         12233 344444  3899999998


Q ss_pred             cCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           75 TSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        75 vp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ...                ..+.++.+.+ .+   .++.+++-+++
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~---~p~a~~ivvtN  124 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMAS---GFQGLFLVATN  124 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH---TCCSEEEECSS
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhh---CCCceEEEecC
Confidence            654                1245556666 43   45566665554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.63  E-value=9e-08  Score=73.04  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HHHH-------cC----ceEecChHHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LCHR-------SG----ISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a~~-------~g----~~~~~~~~~~~~~~aD~iil   73 (275)
                      ..+++||+|||+|.+|+++|..|...++ ++.++|.++...  .+..       .+    +..+++.+++ .+++|+|++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~adiVvi   82 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA-LTGADCVIV   82 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH-HTTCSEEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhh-hcCCCeEEE
Confidence            3466899999999999999999988885 899999887431  1111       11    1344566665 489999999


Q ss_pred             ecCc---------------------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhh
Q 023897           74 STSI---------------------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQV  115 (275)
Q Consensus        74 avp~---------------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~  115 (275)
                      +...                     ..+.++++.+ .   ..++.+++.+++--......+.+.
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~---~~p~aiviivsNPvd~lt~~~~~~  143 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK---YCPKTFIIVVTNPLDCMVKVMCEA  143 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHH---HCTTCEEEECCSSHHHHHHHHHHH
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHh---cCCCcEEEEeCCcHHHHHHHHHHH
Confidence            8732                     1245556666 3   245667776664322233344443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=7e-08  Score=72.46  Aligned_cols=87  Identities=16%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH--------cCceE-ecChHHHhccCCCEEEEecCc-
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR--------SGISF-FSDKRAFLEADNDVILISTSI-   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~--------~g~~~-~~~~~~~~~~~aD~iilavp~-   77 (275)
                      |||+|||+|.+|.++|..+..++.  ++.++|++++..  .+.+        ..... ..+.++  ++++|+|+++... 
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~--~~~adivvitag~~   78 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD--LKGSDVVIVAAGVP   78 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG--GTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH--hcCCCEEEEecccc
Confidence            799999999999999999988874  899999997532  1111        11223 334444  3899999999644 


Q ss_pred             ---------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 ---------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ---------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                     ..+.++.+.+ .   ..++.+++.+++
T Consensus        79 ~~~g~~r~dl~~~N~~I~~~i~~~i~~---~~p~aivivvtN  117 (140)
T d1a5za1          79 QKPGETRLQLLGRNARVMKEIARNVSK---YAPDSIVIVVTN  117 (140)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHH---HCTTCEEEECSS
T ss_pred             cCCCcchhhhhccccchHHHHHHHHHh---cCCCcEEEEeCC
Confidence                           1234555555 3   346667776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.61  E-value=2e-08  Score=79.86  Aligned_cols=91  Identities=16%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS   86 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~   86 (275)
                      ....++|||||+|++|+.+|+.+..-|.+|.+||+...... ...+.. ..+++++ +.++|+|++++|-.. ...++.+
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~-~~~~~~-~~~l~~~-l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL-EKKGYY-VDSLDDL-YKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHTTCB-CSCHHHH-HHHCSEEEECSCCCGGGTTCBSH
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-ccceee-ecccccc-ccccccccccCCccccccccccH
Confidence            34568999999999999999999999999999998764221 222333 3578886 589999999999642 3333321


Q ss_pred             --CCCCCCCCCcEEEeCCC
Q 023897           87 --LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 --l~~~~l~~~~iv~d~~s  103 (275)
                        +..  ++++.++++++-
T Consensus       117 ~~l~~--mk~~a~lIN~sR  133 (197)
T d1j4aa1         117 ESIAK--MKQDVVIVNVSR  133 (197)
T ss_dssp             HHHHH--SCTTEEEEECSC
T ss_pred             HHHhh--hCCccEEEecCc
Confidence              133  788999998863

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=1.2e-07  Score=72.59  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S   86 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~   86 (275)
                      +.++|+|||.|.=|.+=|..|++.|.+|++--|...  .+.|.+.|.++. +.+|+ ++++|+|++-+|+..-.++.+ +
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA-~~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTA-VAAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHH-HHTCSEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHH-hhhcCeeeeecchHHHHHHHHHh
Confidence            357899999999999999999999999998877653  467888899875 56675 489999999999998889996 6


Q ss_pred             C-CCCCCCCCcEEEe
Q 023897           87 L-PVHCLQRRTLIAD  100 (275)
Q Consensus        87 l-~~~~l~~~~iv~d  100 (275)
                      + |+  +++|..+.=
T Consensus        93 I~p~--lk~g~~L~F  105 (182)
T d1np3a2          93 IEPN--LKKGATLAF  105 (182)
T ss_dssp             TGGG--CCTTCEEEE
T ss_pred             hhhh--cCCCcEEEE
Confidence            8 88  999987763

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.60  E-value=1.3e-07  Score=71.07  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCc--eEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGI--SFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~--~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+|||+|.+|.++|..|...|.  ++.++|+++...  .+..         ...  ..+++.++  ++++|+++++..
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~--~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD--TANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG--GTTCSEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH--hcCCeEEEEEEe
Confidence            799999999999999999999884  899999987431  1111         122  23445444  389999999964


Q ss_pred             c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                ..+.++.+.+ .+   .++.+++.+++
T Consensus        79 ~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~---~p~aivivvtN  119 (142)
T d1guza1          79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKH---SKNPIIIVVSN  119 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH---CSSCEEEECCS
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHhhcc---CCCeEEEEecC
Confidence            2                1245555566 33   46667776654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.6e-07  Score=70.46  Aligned_cols=101  Identities=9%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....++++|+|+|.+|..+|+.++..|.+|++|+++|.. ..|.-.|..+. ..+++ +..+|+++.|+....+  .+-+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a-~~~adivvtaTGn~~vI~~eh~   98 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEA-CQEGNIFVTTTGCIDIILGRHF   98 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHH-TTTCSEEEECSSCSCSBCHHHH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhh-hhhccEEEecCCCccchhHHHH
Confidence            456789999999999999999999999999999999954 45666677764 56775 5899999999986432  3333


Q ss_pred             hcCCCCCCCCCcEEEeCCCCChhH-HHHHHhh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKEYP-RNVLLQV  115 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~~~-~~~l~~~  115 (275)
                      +.     ++++.++.+++....++ ++.+.+.
T Consensus        99 ~~-----MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          99 EQ-----MKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             TT-----CCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             Hh-----ccCCeEEEEeccccceecHHHHhhc
Confidence            33     78899999988765543 3445443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.58  E-value=6.2e-08  Score=75.05  Aligned_cols=91  Identities=16%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceE--------ecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISF--------FSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~--------~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      .+||.|||+|.||..+|+.|.+.||+|+++||+.+.  ..+.+.+...        ....++. +...|.++.++|....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE-VAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHH-HTTSSEEEECSCGGGH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhh-hhccceeEeeccchhh
Confidence            478999999999999999999999999999999863  2333333211        1122332 4688999999998876


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVKE  106 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k~  106 (275)
                      ..+....    ...+..++|.+....
T Consensus        81 ~~~~~~~----~~~~~~~~~~~~~~~  102 (182)
T d1e5qa1          81 ATVIKSA----IRQKKHVVTTSYVSP  102 (182)
T ss_dssp             HHHHHHH----HHHTCEEECSSCCCH
T ss_pred             hHHHHHH----HhhccceeecccCcH
Confidence            6665554    234567777765543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.57  E-value=2.1e-07  Score=71.22  Aligned_cols=90  Identities=12%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH--c-----Cc---eEecChHHHhccCCCEEEEe
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR--S-----GI---SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~--~-----g~---~~~~~~~~~~~~~aD~iila   74 (275)
                      ....||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+  .     +.   ....+.++  +++||+|+++
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~--~~~adiVVit   95 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV--TANSKIVVVT   95 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG--GTTCSEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh--cccccEEEEe
Confidence            345699999999999999999999986  899999997532  2211  1     11   22345555  3899999997


Q ss_pred             cCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           75 TSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        75 vp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ...                ..++++...+ .   ..++.+++-+++
T Consensus        96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~---~~p~aiiivvtN  138 (160)
T d1i0za1          96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVK---YSPDCIIIVVSN  138 (160)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHH---HCTTCEEEECSS
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeCC
Confidence            544                1234555555 3   345666665554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.55  E-value=8.8e-08  Score=73.49  Aligned_cols=94  Identities=20%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh--hhHHHHcCceE--ecChHHHhccCCCEEEEecCchh---
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH--SQLCHRSGISF--FSDKRAFLEADNDVILISTSILS---   79 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~--~~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~---   79 (275)
                      .....+|.|||+|.||..+++.|...|+ +|++++|+.+  ...+.+.|...  .+++.+. +.++|+||.||+...   
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~-l~~~Divi~atss~~~ii   99 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH-LARSDVVVSATAAPHPVI   99 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHH-HHTCSEEEECCSSSSCCB
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHH-hccCCEEEEecCCCCccc
Confidence            4567899999999999999999999997 7999999974  34666667643  3455664 479999999998642   


Q ss_pred             HHHHhhcC-CCCCCCCCcEEEeCC
Q 023897           80 LSEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        80 ~~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      ..+.++.. ......+..+++|++
T Consensus       100 ~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2         100 HVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cHhhhHHHHHhcccCCCeEEEeec
Confidence            13333332 110023456889975

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.54  E-value=3.4e-07  Score=68.81  Aligned_cols=87  Identities=18%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhhH--HH--Hc-----C---ceEecChHHHhccCCCEEEEecCc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQL--CH--RS-----G---ISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~~--a~--~~-----g---~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      .||+|||+|.+|+++|..|..+|.  ++.++|+++....  +.  +.     +   +...++.++  ++++|+|+++...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~--~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI--CRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG--GTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH--hhCCcEEEEeccc
Confidence            589999999999999999999886  8999999985322  11  11     1   123455555  3799999999655


Q ss_pred             ----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 ----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                      ..+.++..++ .+   .++.+++.+++
T Consensus        80 ~~~~g~~R~dl~~~N~~i~~~i~~~i~~~---~p~ai~ivvtN  119 (143)
T d1llda1          80 RQKPGQSRLELVGATVNILKAIMPNLVKV---APNAIYMLITN  119 (143)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHH---CTTSEEEECCS
T ss_pred             ccCCCCchhhhhhhhHHHHHHHHHHHHhh---CCCeEEEEeCC
Confidence                            1234555555 32   45566665554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.54  E-value=4.4e-07  Score=68.11  Aligned_cols=65  Identities=18%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HHHH---------cC--ceEecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LCHR---------SG--ISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a~~---------~g--~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      ++||+|||+|.+|+++|..|..++. ++.++|++++..  .+.+         ..  +..+.+.++ + +++|+|+++..
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~-~~advvvitag   78 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-T-ANSDVIVVTSG   78 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-G-TTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-h-cCCCEEEEeee
Confidence            3699999999999999999998875 899999887432  1111         11  234566666 3 89999999985


Q ss_pred             c
Q 023897           77 I   77 (275)
Q Consensus        77 ~   77 (275)
                      .
T Consensus        79 ~   79 (142)
T d1uxja1          79 A   79 (142)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.53  E-value=2.6e-07  Score=69.72  Aligned_cols=63  Identities=29%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------cCc---eEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------SGI---SFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~g~---~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+       .+.   ....+.++  +++||+|+++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~--l~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAA--LADADVVISTLG   78 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGG--GTTCSEEEECCS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHH--hccccEEEEecc
Confidence            699999999999999999998874  899999998532  1111       111   23445555  389999999855

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=4.6e-08  Score=77.28  Aligned_cols=102  Identities=16%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS-   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~-   86 (275)
                      ...++|||||+|.+|..+|+.+...|.+|++||+......   .......+++++ ++.+|+|++++|-. ....++.+ 
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~~~~~l~el-l~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL---GNATQVQHLSDL-LNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC---TTCEECSCHHHH-HHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccceEEEEeecccchhhhhhhcccccceEeeccccccchh---hhhhhhhhHHHH-HhhccceeecccCCcchhhhccHH
Confidence            4668999999999999999999999999999998754221   122334678886 58999999999954 33333321 


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      . ..  ++++.+++.++--.....+.+.+.+
T Consensus       118 ~l~~--mk~~a~lIN~aRG~lvde~aL~~aL  146 (188)
T d1sc6a1         118 EISL--MKPGSLLINASRGTVVDIPALADAL  146 (188)
T ss_dssp             HHHH--SCTTEEEEECSCSSSBCHHHHHHHH
T ss_pred             HHhh--CCCCCEEEEcCcHHhhhhHHHHHHH
Confidence            1 33  6789999998743332234444444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=3.5e-07  Score=69.87  Aligned_cols=68  Identities=19%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------cCc---eEecChHHHhccCCCEEEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------SGI---SFFSDKRAFLEADNDVILI   73 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~g~---~~~~~~~~~~~~~aD~iil   73 (275)
                      .+...||+|||+|.+|+++|..|...|.  ++.++|++++..  .+.+       .+.   ....+.++  ..++|+|++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~--~~~adivvi   93 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNV--SANSKLVII   93 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGG--GTTEEEEEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhh--hccccEEEE
Confidence            3456799999999999999999999986  899999997532  2211       111   23455555  389999999


Q ss_pred             ecCc
Q 023897           74 STSI   77 (275)
Q Consensus        74 avp~   77 (275)
                      +...
T Consensus        94 tag~   97 (159)
T d2ldxa1          94 TAGA   97 (159)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            8654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.49  E-value=1.6e-07  Score=72.80  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      |+++||||||+|.||+..+..+.+. +++++ +++++++..  ...+.....+..+. ..+.|+|++|+|+....++...
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~--~~~~~~~~~~~~~~-~~~~D~Vvi~tp~~~h~~~a~~   77 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD--TKTPVFDVADVDKH-ADDVDVLFLCMGSATDIPEQAP   77 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS--SSSCEEEGGGGGGT-TTTCSEEEECSCTTTHHHHHHH
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc--cccccccchhhhhh-ccccceEEEeCCCcccHHHHHH
Confidence            4568999999999999999999876 56665 578776421  12234444555554 4789999999999987777766


Q ss_pred             CCCCCCCCCcEEEe
Q 023897           87 LPVHCLQRRTLIAD  100 (275)
Q Consensus        87 l~~~~l~~~~iv~d  100 (275)
                      .    +..|.-+++
T Consensus        78 a----L~aG~~vv~   87 (170)
T d1f06a1          78 K----FAQFACTVD   87 (170)
T ss_dssp             H----HTTTSEEEC
T ss_pred             H----HHCCCcEEE
Confidence            5    555665554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.47  E-value=6e-08  Score=77.25  Aligned_cols=89  Identities=13%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc-
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS-   86 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~-   86 (275)
                      ...++|||||+|++|+.+|+.++.-|.+|++||+.+...  ...... ..+++++ ++.+|+|++++|... ...++.. 
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~--~~~~~~-~~~l~~l-~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--DHPDFD-YVSLEDL-FKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--CCTTCE-ECCHHHH-HHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             ccceeeeeeecccccccccccccccceeeeccCCccchh--hhcchh-HHHHHHH-HHhcccceeeecccccccccccHH
Confidence            356799999999999999999999999999999876321  111222 3578885 589999999999642 3333321 


Q ss_pred             -CCCCCCCCCcEEEeCCC
Q 023897           87 -LPVHCLQRRTLIADVLS  103 (275)
Q Consensus        87 -l~~~~l~~~~iv~d~~s  103 (275)
                       +..  ++++.+++.++-
T Consensus       119 ~l~~--mk~~a~lIN~aR  134 (199)
T d1dxya1         119 AFNL--MKPGAIVINTAR  134 (199)
T ss_dssp             HHHH--SCTTEEEEECSC
T ss_pred             Hhhc--cCCceEEEeccc
Confidence             133  788999998874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.47  E-value=3.8e-07  Score=67.50  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-HHcCceEe----cCh---HHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-HRSGISFF----SDK---RAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-~~~g~~~~----~~~---~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |||.|+|+|.+|..+++.|.+.|++|++.|.+++ .+.. .+.+..+.    ++.   +++-++++|.++.+++.+...-
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~   80 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL   80 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence            7999999999999999999999999999999996 3333 34465331    122   2221468999999988875432


Q ss_pred             HhhcC-CCCCCCCCcEEEeCC
Q 023897           83 VLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        83 v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      .+..+ ..  +....+++-+.
T Consensus        81 ~~~~~~k~--~~~~~iI~~~~   99 (132)
T d1lssa_          81 MSSLLAKS--YGINKTIARIS   99 (132)
T ss_dssp             HHHHHHHH--TTCCCEEEECS
T ss_pred             HHHHHHHH--cCCceEEEEec
Confidence            22222 22  44445555443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.45  E-value=3.3e-07  Score=68.78  Aligned_cols=64  Identities=27%  Similarity=0.256  Sum_probs=44.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhh--hHHHH--cCc------eE-ecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHS--QLCHR--SGI------SF-FSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~--~~a~~--~g~------~~-~~~~~~~~~~~aD~iilavp   76 (275)
                      +.||+|||+|.+|+++|..+..++.  ++.++|++++.  ..+.+  ...      .. ..+.++  ++++|+|+++..
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--~~~adivvitag   77 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD--VKDCDVIVVTAG   77 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG--GTTCSEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH--hCCCceEEEecc
Confidence            3689999999999999999999885  89999998853  23322  111      22 234444  389999999844

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.1e-07  Score=71.50  Aligned_cols=76  Identities=24%  Similarity=0.394  Sum_probs=59.6

Q ss_pred             CCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897           11 TLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus        11 ~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      ++||||||+|.||.. ....+... ++++. ++|++++.  ..+.+.++..+++.+++ .++.|+|++|+|++...+++.
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l-~~~~D~V~I~tp~~~h~~~~~   79 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL-AASCDAVFVHSSTASHFDVVS   79 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH-HTTCSEEEECSCTTHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhh-hhhcccccccccchhcccccc
Confidence            479999999999975 56677664 56765 58888753  45567788888888886 589999999999988777766


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      ..
T Consensus        80 ~a   81 (164)
T d1tlta1          80 TL   81 (164)
T ss_dssp             HH
T ss_pred             cc
Confidence            65

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.42  E-value=4.9e-07  Score=70.48  Aligned_cols=72  Identities=14%  Similarity=0.203  Sum_probs=48.7

Q ss_pred             CeEEEE-cCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHHc------CceEecChHHHhccCCCEEEEecCchhHHH
Q 023897           12 LKIGII-GFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHRS------GISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        12 ~~I~II-G~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~~------g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      |||+|| |+|.||+++|+.|+++||+|++|+|+++. + ...+.      ......+.... ....+....+++.....+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA-AEACDIAVLTIPWEHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHH-HHHCSEEEECSCHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccc-cchhhhhhhheeeeccch
Confidence            799999 79999999999999999999999999852 2 21111      11122223322 245677777777665544


Q ss_pred             Hh
Q 023897           83 VL   84 (275)
Q Consensus        83 v~   84 (275)
                      .+
T Consensus        80 ~~   81 (212)
T d1jaya_          80 TA   81 (212)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=2.7e-07  Score=68.33  Aligned_cols=69  Identities=13%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---c---ChHHHhccCCCEEEEecCchhH
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---S---DKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~---~~~~~~~~~aD~iilavp~~~~   80 (275)
                      +++.|+|+|.+|..+|+.|.+.|++|+++|.+++ .+.+.+.|... .   +   .+.++-+.++|.+|++++.+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~   77 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   77 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence            4789999999999999999999999999999996 45555555422 1   1   1233224789999999997643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.38  E-value=5.9e-07  Score=68.54  Aligned_cols=92  Identities=18%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHCC-CeEE-EEcCChh---hhHHHHcCceEecC-hHHHh----ccCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQG-HILR-ATSRTDH---SQLCHRSGISFFSD-KRAFL----EADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~g-~~V~-~~dr~~~---~~~a~~~g~~~~~~-~~~~~----~~~aD~iilavp~~   78 (275)
                      +++||||||+|.+|+- +...|++.. .++. +.+|+++   ...+.+.|+....+ .++++    ..+.|+||+|||..
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence            4679999999999985 667776654 3655 4688764   35678888865544 33221    13679999999986


Q ss_pred             hHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           79 SLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        79 ~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .-.+-......  .+.|..++|.++
T Consensus        83 ~h~~~~~~~~a--a~~G~~VID~s~  105 (157)
T d1nvmb1          83 AHVQNEALLRQ--AKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHHHH--HCTTCEEEECST
T ss_pred             hHHHhHHHHHH--HHcCCEEEEccc
Confidence            43322111111  467899999876

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.35  E-value=1.3e-06  Score=66.03  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhh--HHHH-------cC--c--eEecChHHHhccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQ--LCHR-------SG--I--SFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~--~a~~-------~g--~--~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +.||+|||+|.+|+++|..|...+. ++.++|++++..  .+.+       .+  .  ....+.++  ++++|+|+++..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~--~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDD--LAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGG--GTTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccc--cCCCcEEEEecc
Confidence            4699999999999999998888875 899999987432  2211       11  1  22334444  389999999965

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.34  E-value=4.1e-07  Score=70.10  Aligned_cols=76  Identities=22%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             CeEEEEcCChHHHH-HHHHHHHC-CCeEEEEcCChhh--hHHHHcCc-eEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           12 LKIGIIGFGPFGQF-LAKTMIKQ-GHILRATSRTDHS--QLCHRSGI-SFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        12 ~~I~IIG~G~mG~s-la~~L~~~-g~~V~~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      +||||||+|.||.. ....+.+. +.++.++|++++.  ..+.+.++ ..+++.++++..+.|+|++|+|+....+++..
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~   81 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF   81 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc
Confidence            79999999999976 56777666 4588899999853  45556665 35677777543467999999999988777776


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      .
T Consensus        82 a   82 (167)
T d1xeaa1          82 F   82 (167)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=98.25  E-value=1.4e-06  Score=60.62  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             CCCCCCCeEEEEcCChHH-HHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecCh-HHHhccCCCEEEEecC
Q 023897            6 PSSSSTLKIGIIGFGPFG-QFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDK-RAFLEADNDVILISTS   76 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG-~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~-~~~~~~~aD~iilavp   76 (275)
                      |.....+||-|||.|-+| +++|+.|.+.|++|+++|+...  .+...+.|+.+.... .+. +.+.|+||++.-
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~-i~~~d~vV~S~A   76 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEH-IEGASVVVVSSA   76 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGG-GTTCSEEEECTT
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCcccc-CCCCCEEEECCC
Confidence            344566899999999999 6679999999999999998753  455566788654322 222 478999888743

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=2e-06  Score=67.09  Aligned_cols=77  Identities=12%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc----eEecChHHHhc-cCCCEEEEecCchhHH
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI----SFFSDKRAFLE-ADNDVILISTSILSLS   81 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~----~~~~~~~~~~~-~~aD~iilavp~~~~~   81 (275)
                      ++||||||+|.||...+..+... +++|+ ++|++++.  ..+.+.++    ..+++.++++. .+.|+|++|+|+....
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence            46999999999999999999876 56777 57998853  34455553    57788888531 3579999999999877


Q ss_pred             HHhhcC
Q 023897           82 EVLNSL   87 (275)
Q Consensus        82 ~v~~~l   87 (275)
                      +.+...
T Consensus        81 ~~~~~~   86 (184)
T d1ydwa1          81 EWAIKA   86 (184)
T ss_dssp             HHHHHH
T ss_pred             chhhhh
Confidence            777665

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=1.7e-06  Score=67.34  Aligned_cols=79  Identities=16%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCChHHHH-HHHHHHHCC--CeEE-EEcCChhh--hHHHHcCc-eEecChHHHhc-cCCCEEEEecCchhH
Q 023897            9 SSTLKIGIIGFGPFGQF-LAKTMIKQG--HILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLE-ADNDVILISTSILSL   80 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~s-la~~L~~~g--~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~-~~aD~iilavp~~~~   80 (275)
                      |+++||||||+|.+|.. ....+.+.+  ++|+ ++|++++.  ..+.+.+. ..+++.++++. .+.|+|++|+|++..
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence            45679999999999986 577787643  4666 68998853  34455565 56789988642 257999999999987


Q ss_pred             HHHhhcC
Q 023897           81 SEVLNSL   87 (275)
Q Consensus        81 ~~v~~~l   87 (275)
                      .+++..+
T Consensus        81 ~~~~~~a   87 (181)
T d1zh8a1          81 LPFIEKA   87 (181)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            7777776

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.24  E-value=4.1e-06  Score=63.41  Aligned_cols=93  Identities=15%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL   84 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~   84 (275)
                      ....+++.|+|+|.+|..+|..++..|.+|++++++|-+ .+|.-.|..+ .+.+++ ++.+|++|.+|....+  .+-+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a-~~~aDi~vTaTGn~~vI~~~h~   97 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEI-VDKGDFFITCTGNVDVIKLEHL   97 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHH-TTTCSEEEECCSSSSSBCHHHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHc-cccCcEEEEcCCCCccccHHHH
Confidence            346789999999999999999999999999999999953 4566678877 567776 5999999999997532  3333


Q ss_pred             hcCCCCCCCCCcEEEeCCCCChh
Q 023897           85 NSLPVHCLQRRTLIADVLSVKEY  107 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~k~~  107 (275)
                      +.     ++.+.|+.+++....+
T Consensus        98 ~~-----MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          98 LK-----MKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             TT-----CCTTCEEEECSSTTTS
T ss_pred             HH-----hhCCeEEEeccccchh
Confidence            33     7889999998876544

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=3.4e-06  Score=65.13  Aligned_cols=67  Identities=18%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             CCeEEEEcCChHHHHHHH--HHHH-C---CCeEEEEcCChhhhHH---------HHc----CceEecChHHHhccCCCEE
Q 023897           11 TLKIGIIGFGPFGQFLAK--TMIK-Q---GHILRATSRTDHSQLC---------HRS----GISFFSDKRAFLEADNDVI   71 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~--~L~~-~---g~~V~~~dr~~~~~~a---------~~~----g~~~~~~~~~~~~~~aD~i   71 (275)
                      .|||+|||+|.+|.+++.  .+.. .   +.+|.++|++++....         ...    .+..+++.+++ +++||+|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~ea-L~dad~V   80 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDV-IIDADFV   80 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH-HTTCSEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhc-ccCCCeE
Confidence            479999999999987543  2332 2   3599999999853111         112    22466788886 4899999


Q ss_pred             EEecCch
Q 023897           72 LISTSIL   78 (275)
Q Consensus        72 ilavp~~   78 (275)
                      +.++...
T Consensus        81 v~~~~~g   87 (171)
T d1obba1          81 INTAMVG   87 (171)
T ss_dssp             EECCCTT
T ss_pred             eeecccc
Confidence            9997654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=2.2e-06  Score=58.74  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             CeEEEEcCChHHH-HHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIGFGPFGQ-FLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG~G~mG~-sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||-|||-|-+|. ++|+.|.++|+.|+++|+.+.  .+...+.|++++......-+.++|+||++.-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence            7999999999997 789999999999999998873  3566778887643221111378999988743

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.16  E-value=3.4e-06  Score=63.18  Aligned_cols=87  Identities=13%  Similarity=0.075  Sum_probs=57.8

Q ss_pred             eEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHHHHc--Cc--------eEecChHHHhccCCCEEEEecCc--
Q 023897           13 KIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLCHRS--GI--------SFFSDKRAFLEADNDVILISTSI--   77 (275)
Q Consensus        13 ~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a~~~--g~--------~~~~~~~~~~~~~aD~iilavp~--   77 (275)
                      ||+|||+ |.+|+++|..|..+|.  ++.++|.++....+.+.  ..        ....+..+. .++||+|+++...  
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~-~~~aDivVitag~~~   80 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDC-LKGCDVVVIPAGVPR   80 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHH-HTTCSEEEECCSCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHH-hCCCCEEEECCCcCC
Confidence            8999995 9999999999999886  79999998743333221  11        112344454 4899999998553  


Q ss_pred             --------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           78 --------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 --------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                                    ..+++++..+ .+   .++.+++.+++
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~---~p~~iiivvtN  118 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQH---CPDAMICIISN  118 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHH---CTTSEEEECSS
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhc---CCCeEEEEecC
Confidence                          1345566666 43   45566665554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.06  E-value=3.5e-05  Score=57.31  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCChh--hh--HHHH--------cCce-EecChHHHhccCCCEEEEec
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTDH--SQ--LCHR--------SGIS-FFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~~--~~--~a~~--------~g~~-~~~~~~~~~~~~aD~iilav   75 (275)
                      .||+||| +|.+|+++|..+..++.  ++.++|++..  ..  .+.+        .... ...+.++  +.+||+|+++.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~--~~~aDiVvita   78 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYED--TAGSDVVVITA   78 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGG--GTTCSEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHH--hhhcCEEEEec
Confidence            3899999 69999999999999986  7999997542  21  1211        1122 2345555  38999999985


Q ss_pred             Cc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           76 SI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        76 p~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      ..                ..+.++...+ .   ..++.+++.+++
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~---~~p~~i~ivvtN  120 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDE---HNDDYISLTTSN  120 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHT---TCSCCEEEECCS
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHh---cCCCceEEEecC
Confidence            42                1244555566 3   345566666654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=3e-06  Score=58.58  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCce-EecC-hHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGIS-FFSD-KRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~-~~~~-~~~~~~~~aD~iila   74 (275)
                      +.+||+|+|+|..|.+.|+.|.+.|++|++||.+...  ....+.+.. .... .+.. ..+.|+|+++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~S   71 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEW-LMAADLIVAS   71 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHH-HHHCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhh-hccCCEEEEC
Confidence            5678999999999999999999999999999986632  111112222 1111 1232 3677888876

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.03  E-value=1.7e-05  Score=60.93  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=43.6

Q ss_pred             CCeEEEEcCChHHH--HHHHHHHHCC----CeEEEEcCChhhh--HH---------HHcCc----eEecChHHHhccCCC
Q 023897           11 TLKIGIIGFGPFGQ--FLAKTMIKQG----HILRATSRTDHSQ--LC---------HRSGI----SFFSDKRAFLEADND   69 (275)
Q Consensus        11 ~~~I~IIG~G~mG~--sla~~L~~~g----~~V~~~dr~~~~~--~a---------~~~g~----~~~~~~~~~~~~~aD   69 (275)
                      +|||+|||+|..|.  .++..+....    -++.++|++++..  .+         ...+.    ..+++..++ ++++|
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a-l~gaD   79 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA-LDGAD   79 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH-HTTCS
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh-cCCCC
Confidence            47999999997764  4444444432    3899999987421  11         11222    356777775 48999


Q ss_pred             EEEEecCc
Q 023897           70 VILISTSI   77 (275)
Q Consensus        70 ~iilavp~   77 (275)
                      +|+++...
T Consensus        80 vVv~ta~~   87 (169)
T d1s6ya1          80 FVTTQFRV   87 (169)
T ss_dssp             EEEECCCT
T ss_pred             EEEEcccc
Confidence            99999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.02  E-value=6e-06  Score=61.86  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=44.8

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhh----HHHH-------c--CceE----ecChHHHhccCCCEE
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQ----LCHR-------S--GISF----FSDKRAFLEADNDVI   71 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~----~a~~-------~--g~~~----~~~~~~~~~~~aD~i   71 (275)
                      |||+|||+ |.+|+++|..|...|.  ++.++|+++...    .+.+       .  ..+.    ..+.++  +++||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~--l~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRI--IDESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGG--GTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHH--hccceEE
Confidence            79999995 9999999999999984  999999986421    1111       1  1121    223444  3899999


Q ss_pred             EEecC
Q 023897           72 LISTS   76 (275)
Q Consensus        72 ilavp   76 (275)
                      +++..
T Consensus        79 VitAG   83 (145)
T d1hyea1          79 IITSG   83 (145)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99853

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.5e-05  Score=61.26  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHH---cCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHR---SGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~---~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ..+.++|.|+|+|..+++++.+|.+.|.+|++++|+.+.  ..+..   .+.....+.++.....+|+||-|+|.....+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~   94 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccC
Confidence            456689999999999999999999999999999999853  22222   2221112223222357899999999875332


Q ss_pred             HhhcCCCCCCCCCcEEEeCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      . ..++...++++.++.|+.-
T Consensus        95 ~-~~~~~~~~~~~~~v~D~vY  114 (170)
T d1nyta1          95 I-PAIPSSLIHPGIYCYDMFY  114 (170)
T ss_dssp             C-CCCCGGGCCTTCEEEESCC
T ss_pred             C-CCCcHHHhccCcEEEEeec
Confidence            2 1222122678889999863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.4e-05  Score=59.86  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHC-C--CeEEEEcCChhh-hHHHH--cC---c--e---EecChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQ-G--HILRATSRTDHS-QLCHR--SG---I--S---FFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~-g--~~V~~~dr~~~~-~~a~~--~g---~--~---~~~~~~~~~~~~aD~iilavp   76 (275)
                      |||+||| +|.+|+++|..|..+ +  .++.++|.++.. ..+.+  ..   .  .   ..++.++  ++++|+||++-.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~--~~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA--LEGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH--HTTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc--cCCCCEEEECCC
Confidence            7999999 599999999988643 4  589999987632 22222  11   1  1   1233444  389999999864


Q ss_pred             c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .                ..+.++.+++ .+   .++.+++-+++
T Consensus        79 ~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~---~p~aivivvtN  119 (145)
T d2cmda1          79 VRRKPGMDRSDLFNVNAGIVKNLVQQVAKT---CPKACIGIITN  119 (145)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHH---CTTSEEEECSS
T ss_pred             ccCCCCcchhhHHHHHHHHHHHHHHHHHhh---CCCcEEEEccC
Confidence            3                1245555666 43   35556665554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.93  E-value=4.9e-05  Score=54.47  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             CeEEEEc----CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897           12 LKIGIIG----FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL   87 (275)
Q Consensus        12 ~~I~IIG----~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l   87 (275)
                      ++|+|||    .|..|..+.+.|.+.||+|+.++++.+.    -.|...+.++.++ -...|++++++|++.+.+++++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~l-p~~~D~vvi~vp~~~~~~~l~~~   76 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVREL-PKDVDVIVFVVPPKVGLQVAKEA   76 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGS-CTTCCEEEECSCHHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhc-cccceEEEEEeCHHHHHHHHHHH
Confidence            5799999    4899999999999999998887765421    1477788888884 46679999999999999999988


Q ss_pred             -CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                       .   .....+++..++......+.+++.   +.++++
T Consensus        77 ~~---~g~k~v~~~~g~~~~~~~~~a~~~---gi~vig  108 (116)
T d1y81a1          77 VE---AGFKKLWFQPGAESEEIRRFLEKA---GVEYSF  108 (116)
T ss_dssp             HH---TTCCEEEECTTSCCHHHHHHHHHH---TCEEEC
T ss_pred             Hh---cCCceEEeccchhhHHHHHHHHHc---CCEEEc
Confidence             4   334466776655544444444432   456665

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.9e-06  Score=64.91  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceE-------ecChHHHhccCCCEEEEecCc
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISF-------FSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp~   77 (275)
                      |.++||.|+| .|.+|+.++..|.++||+|+++.|++.. ......+++.       ..++.++ +.++|+||.++..
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~a-l~~~d~vi~~~g~   77 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHH-hcCCCEEEEEecc
Confidence            5678999999 6999999999999999999999999853 2222234422       1233454 4889999998764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=3.6e-05  Score=58.85  Aligned_cols=67  Identities=13%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCChHHHHHH--HHHHHC-C---CeEEEEcCChhhhH--H-------HHcC----ceEecChHHHhccCCCE
Q 023897           10 STLKIGIIGFGPFGQFLA--KTMIKQ-G---HILRATSRTDHSQL--C-------HRSG----ISFFSDKRAFLEADNDV   70 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla--~~L~~~-g---~~V~~~dr~~~~~~--a-------~~~g----~~~~~~~~~~~~~~aD~   70 (275)
                      +..||+|||+|..|++.+  ..+... .   -+|.++|.+++...  +       ...+    +..+++..++ +++||+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea-l~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEA-FTDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHH-HSSCSE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhc-cCCCCE
Confidence            456999999999887633  333322 2   38999999985311  1       1112    2456788776 489999


Q ss_pred             EEEecCc
Q 023897           71 ILISTSI   77 (275)
Q Consensus        71 iilavp~   77 (275)
                      ||++.-.
T Consensus        81 Vvitag~   87 (167)
T d1u8xx1          81 VMAHIRV   87 (167)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999765

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=3.6e-05  Score=58.57  Aligned_cols=66  Identities=8%  Similarity=-0.004  Sum_probs=45.0

Q ss_pred             CeEEEEcCChHHHHHHHH-HH-HC----CCeEEEEcCChhh-hHHHH-------c--CceEecChHHHhccCCCEEEEec
Q 023897           12 LKIGIIGFGPFGQFLAKT-MI-KQ----GHILRATSRTDHS-QLCHR-------S--GISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~-L~-~~----g~~V~~~dr~~~~-~~a~~-------~--g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      |||+|||+|..|++.+.. +. ..    +.++.++|++++. ....+       .  .+..+++..+. ++++|+|+++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~-l~~aDvVVita   79 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGA-VVDAKYVIFQF   79 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHH-HTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccc-cCCCCEEEEec
Confidence            799999999998887743 22 22    2489999999853 21111       1  12455677775 48999999997


Q ss_pred             Cch
Q 023897           76 SIL   78 (275)
Q Consensus        76 p~~   78 (275)
                      -..
T Consensus        80 ~~~   82 (162)
T d1up7a1          80 RPG   82 (162)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.88  E-value=8.4e-06  Score=61.00  Aligned_cols=89  Identities=9%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCCh-h-hhH-HHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTD-H-SQL-CHRSGISFFSDKRAFLEADNDVILISTSILSLSEV   83 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~-~-~~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v   83 (275)
                      .|||+||| .|..|.-+.+.|.+.+|   ++.....+. . ... .............+ ...++|++|+|+|.....+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~-~~~~~d~vf~a~p~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSF-DFSSVGLAFFAAAAEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGC-CGGGCSEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhh-hhccceEEEecCCcchhhhh
Confidence            58999999 59999999999986554   666543322 1 110 00001111111112 23789999999999887777


Q ss_pred             hhcCCCCCCCCCcEEEeCCCC
Q 023897           84 LNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        84 ~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ...+    ..+|.+++|.++-
T Consensus        81 ~~~~----~~~g~~VID~Ss~   97 (144)
T d2hjsa1          81 AERA----RAAGCSVIDLSGA   97 (144)
T ss_dssp             HHHH----HHTTCEEEETTCT
T ss_pred             cccc----ccCCceEEeechh
Confidence            7776    4567899998874

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2e-05  Score=58.97  Aligned_cols=90  Identities=19%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHC-CC---eEEEEcCChhh----hHHHHcCce-EecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQ-GH---ILRATSRTDHS----QLCHRSGIS-FFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~-g~---~V~~~dr~~~~----~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      |+|||||| +|.+|+-+.+.|.++ .+   +++.+..+...    ......... ...+..+  .+++|++|+|+|.+..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~--~~~~DivF~a~~~~~s   78 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA--LKALDIIVTCQGGDYT   78 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH--HHTCSEEEECSCHHHH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhh--hhcCcEEEEecCchHH
Confidence            45899999 599999999876654 32   66666554421    111111111 1223333  3799999999999988


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      .++...+..  ...+.+++|.+|.
T Consensus        79 ~~~~~~~~~--~g~~~~VID~Ss~  100 (146)
T d1t4ba1          79 NEIYPKLRE--SGWQGYWIDAASS  100 (146)
T ss_dssp             HHHHHHHHH--TTCCCEEEECSST
T ss_pred             HHhhHHHHh--cCCCeecccCCcc
Confidence            787777611  2334689998874

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.86  E-value=2.3e-05  Score=58.62  Aligned_cols=88  Identities=16%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHC-CC---eEEEEcCChh--hh--HHHHcCce-EecChHHHhccCCCEEEEecCchhHH
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQ-GH---ILRATSRTDH--SQ--LCHRSGIS-FFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~-g~---~V~~~dr~~~--~~--~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ||||||| +|..|+-+.+.|.+. .|   ++..+..+..  ..  ...+.... ...+.+.  .+++|++|+|+|.....
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~--~~~~DvvF~alp~~~s~   78 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIES--LKQLDAVITCQGGSYTE   78 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHH--HTTCSEEEECSCHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhh--hccccEEEEecCchHHH
Confidence            7999999 699999999877653 33   5555443321  11  11111111 1223333  37999999999999888


Q ss_pred             HHhhcC-CCCCCCCCcEEEeCCCC
Q 023897           82 EVLNSL-PVHCLQRRTLIADVLSV  104 (275)
Q Consensus        82 ~v~~~l-~~~~l~~~~iv~d~~s~  104 (275)
                      ++...+ .   ...+++++|.++.
T Consensus        79 ~~~~~l~~---~g~~~~VIDlSsd   99 (147)
T d1mb4a1          79 KVYPALRQ---AGWKGYWIDAAST   99 (147)
T ss_dssp             HHHHHHHH---TTCCSEEEESSST
T ss_pred             HHhHHHHH---cCCceEEEeCCcc
Confidence            888777 3   2334689998863

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.84  E-value=1.8e-05  Score=63.50  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCChHHHH-HHHHHHHC-CCeEE-EEcCChhh--hHHHHcCc-----eEecChHHHhc-cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQF-LAKTMIKQ-GHILR-ATSRTDHS--QLCHRSGI-----SFFSDKRAFLE-ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~s-la~~L~~~-g~~V~-~~dr~~~~--~~a~~~g~-----~~~~~~~~~~~-~~aD~iilavp~~   78 (275)
                      .+-||||||+|.||.. +...+... +.+|+ ++|++++.  ..+.+.|+     ..+++.++++. .+.|+|++|+|++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999974 56666665 56766 68999853  45566665     24577888531 2579999999999


Q ss_pred             hHHHHhhcC
Q 023897           79 SLSEVLNSL   87 (275)
Q Consensus        79 ~~~~v~~~l   87 (275)
                      ...+++.+.
T Consensus       112 ~H~~~~~~a  120 (221)
T d1h6da1         112 LHAEFAIRA  120 (221)
T ss_dssp             GHHHHHHHH
T ss_pred             hhhhHHHHh
Confidence            877766665

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=2.3e-05  Score=59.15  Aligned_cols=68  Identities=16%  Similarity=0.090  Sum_probs=46.8

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhhh--HHH----H-c------CceEecChHHHhccC
Q 023897            9 SSTLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHSQ--LCH----R-S------GISFFSDKRAFLEAD   67 (275)
Q Consensus         9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~~--~a~----~-~------g~~~~~~~~~~~~~~   67 (275)
                      ++.|||+|||+ |.+|.+++..|...+.       ++..+|.++...  .+.    . .      .+....+..+. .++
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIA-FKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHH-TTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccc-cCC
Confidence            35689999995 9999999999986542       577788776422  111    1 1      12345566665 589


Q ss_pred             CCEEEEecCc
Q 023897           68 NDVILISTSI   77 (275)
Q Consensus        68 aD~iilavp~   77 (275)
                      +|+|+++-..
T Consensus        80 ~dvVVitag~   89 (154)
T d5mdha1          80 LDVAILVGSM   89 (154)
T ss_dssp             CSEEEECCSC
T ss_pred             ceEEEEeccc
Confidence            9999998643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=2.2e-05  Score=60.15  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      ..++|.|||+|..|++++..|.+.|. +|++++|+++.  ..+...+.........   .++|+||-|||..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~---~~~DliINaTpiG   84 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLEN---QQADILVNVTSIG   84 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTT---CCCSEEEECSSTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccc---cchhhheeccccC
Confidence            45789999999999999999999996 89999999853  3445556655444432   6799999999964

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.83  E-value=2.6e-05  Score=55.61  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--h-hHHHHcCceEec---ChHHHhccCCCEEEEecCchhHH
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--S-QLCHRSGISFFS---DKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~-~~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      ..+.++|.|||.|.+|..-++.|.+.|.+|++++....  . ..+.+.+++...   +.++  +.++++|+.|+....+.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~d--l~~~~lv~~at~d~~~n   86 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL--LDSCWLAIAATDDDTVN   86 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG--GTTCSEEEECCSCHHHH
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHH--hCCCcEEeecCCCHHHH
Confidence            45678999999999999999999999999999987663  2 233333443221   2233  37899999999887664


Q ss_pred             -HHhhcCCCCCCCCCcEEEeCCC
Q 023897           82 -EVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        82 -~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                       .+....     ++..+++++..
T Consensus        87 ~~i~~~a-----~~~~ilVNv~D  104 (113)
T d1pjqa1          87 QRVSDAA-----ESRRIFCNVVD  104 (113)
T ss_dssp             HHHHHHH-----HHTTCEEEETT
T ss_pred             HHHHHHH-----HHcCCEEEeCC
Confidence             333332     22345665543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.5e-05  Score=58.98  Aligned_cols=72  Identities=14%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-----cChHHHh-------ccCCCEEEEecC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-----SDKRAFL-------EADNDVILISTS   76 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~-------~~~aD~iilavp   76 (275)
                      ..+|.|+|+|.+|...+..++..|. +|++.|++++ ++.+++.|....     .+..+..       -..+|++|-|++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G  106 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG  106 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence            4589999999999999999999998 7999999995 578888887321     1222210       025799999999


Q ss_pred             chhHHH
Q 023897           77 ILSLSE   82 (275)
Q Consensus        77 ~~~~~~   82 (275)
                      .....+
T Consensus       107 ~~~~~~  112 (171)
T d1pl8a2         107 AEASIQ  112 (171)
T ss_dssp             CHHHHH
T ss_pred             CchhHH
Confidence            765433

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.73  E-value=6.7e-05  Score=59.07  Aligned_cols=68  Identities=19%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      +...++|+|-|+|++|..+|+.|.+.|.+|+++|.++. .......|.+.. +.++.+..+||+++-|--
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~   92 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM   92 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc
Confidence            45778999999999999999999999999999999985 456666777654 344444458898886643

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=6.1e-06  Score=63.57  Aligned_cols=81  Identities=14%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             CCCCCCCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHH
Q 023897            6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSE   82 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~   82 (275)
                      .+.+.++||+|||+|.||...+..|.+..  ..+.+++.......+...+.. ..+.++++. .+.|+|++|+|++...+
T Consensus         2 ~~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~~   80 (172)
T d1lc0a1           2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED   80 (172)
T ss_dssp             CCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH
T ss_pred             CCCCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccC-cCCHHHHHhCCCcchhhhccccccccc
Confidence            35567789999999999999998887642  123333322211111111222 246666531 35699999999998777


Q ss_pred             HhhcC
Q 023897           83 VLNSL   87 (275)
Q Consensus        83 v~~~l   87 (275)
                      ++...
T Consensus        81 ~~~~a   85 (172)
T d1lc0a1          81 YIRQF   85 (172)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            76665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=3.7e-05  Score=54.69  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             cCCCCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            3 VSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         3 ~~~~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..|..+...||||||.|..|+.|+.+..+.|++++++|++++
T Consensus         3 ~~~~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           3 LGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             BCCTTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             cCCCCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3456677788999999999999999999999999999999874

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.67  E-value=0.00018  Score=53.08  Aligned_cols=103  Identities=8%  Similarity=0.033  Sum_probs=74.4

Q ss_pred             CCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .++|+|||+    |.+|..+...|.+.||+|+.+++...    .-.|...+.++.++ -..-|++++++|+..+.+++++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dl-p~~iD~v~i~vp~~~~~~~~~e   93 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDI-PDKIEVVDLFVKPKLTMEYVEQ   93 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGC-SSCCSEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCccccccccc-CccceEEEEEeCHHHHHHHHHH
Confidence            457999994    78999999999999999888876542    11477778888884 4678999999999999999998


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      + .   .....+++-.++......+..++   .+..+++
T Consensus        94 ~~~---~g~k~v~~~~G~~~ee~~~~a~~---~gi~vig  126 (139)
T d2d59a1          94 AIK---KGAKVVWFQYNTYNREASKKADE---AGLIIVA  126 (139)
T ss_dssp             HHH---HTCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHH---hCCCEEEEeccccCHHHHHHHHH---CCCEEEc
Confidence            8 4   34456666666554433333332   2345554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.64  E-value=1.7e-05  Score=60.36  Aligned_cols=91  Identities=19%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH---cCceE-ec---ChHHHhccCCCEEEEecCc--hh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR---SGISF-FS---DKRAFLEADNDVILISTSI--LS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~---~g~~~-~~---~~~~~~~~~aD~iilavp~--~~   79 (275)
                      ..-||.|||+|..|..-++..+..|-+|+++|.+.+. +....   ..+.. ..   .+++. +.++|+||-++-.  ..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~-~~~aDivI~aalipG~~  109 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETA-VAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHH-HHTCSEEEECCCCTTSS
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHh-hccCcEEEEeeecCCcc
Confidence            4569999999999999999999999999999999853 32222   12221 12   23454 4799999999653  22


Q ss_pred             HHHHhh-cC-CCCCCCCCcEEEeCCC
Q 023897           80 LSEVLN-SL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        80 ~~~v~~-~l-~~~~l~~~~iv~d~~s  103 (275)
                      ...++. +. ..  +++|.+++|++.
T Consensus       110 aP~lIt~~mv~~--Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQ--MRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTT--SCTTCEEEETTC
T ss_pred             cCeeecHHHHhh--cCCCcEEEEeec
Confidence            222221 11 33  789999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.61  E-value=7.1e-05  Score=57.65  Aligned_cols=90  Identities=14%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEec-----------------------------Ch
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS-----------------------------DK   60 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~-----------------------------~~   60 (275)
                      .-||.|||+|..|..-++.....|.+|+++|.++. .+..++.+....+                             .+
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l  108 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV  108 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence            35899999999999999999999999999999985 4444444331110                             01


Q ss_pred             HHHhccCCCEEEEecCch--hHHHHh-hcC-CCCCCCCCcEEEeCCC
Q 023897           61 RAFLEADNDVILISTSIL--SLSEVL-NSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        61 ~~~~~~~aD~iilavp~~--~~~~v~-~~l-~~~~l~~~~iv~d~~s  103 (275)
                      .+. +.++|+||-++-..  ....++ ++. ..  +++|.+++|++.
T Consensus       109 ~~~-l~~aDlVI~talipG~~aP~lit~~mv~~--Mk~GSVIVDvai  152 (183)
T d1l7da1         109 LKE-LVKTDIAITTALIPGKPAPVLITEEMVTK--MKPGSVIIDLAV  152 (183)
T ss_dssp             HHH-HTTCSEEEECCCCTTSCCCCCSCHHHHTT--SCTTCEEEETTG
T ss_pred             HHH-HHhhhhheeeeecCCcccceeehHHHHHh--cCCCcEEEEEee
Confidence            122 36899999885432  222212 122 33  789999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=2.8e-05  Score=60.37  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hh----HHHH----cCc--eEe--cC---hHHHhccCCC
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQ----LCHR----SGI--SFF--SD---KRAFLEADND   69 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~----~a~~----~g~--~~~--~~---~~~~~~~~aD   69 (275)
                      ......+|.|||+|..|++++.+|.+.|. ++++++|+++ ..    .+.+    .+.  ...  .+   ..+. ...+|
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d   92 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA-LASAD   92 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH-HHTCS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhh-hcccc
Confidence            34566899999999999999999999986 7999999874 22    1222    122  111  11   2232 36899


Q ss_pred             EEEEecCchhHHHHhhcC--CCCCCCCCcEEEeCC
Q 023897           70 VILISTSILSLSEVLNSL--PVHCLQRRTLIADVL  102 (275)
Q Consensus        70 ~iilavp~~~~~~v~~~l--~~~~l~~~~iv~d~~  102 (275)
                      +||-|+|.......-+.+  +...++++.+++|+.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             eeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            999999975321111122  111267788999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=4.1e-05  Score=58.77  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHc----CceEecChHHHhccCCCEEEEecCchhH
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRS----GISFFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~----g~~~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      .....++|.|+|+|..+.+++.+|.+.+.+|++++|+.+.  ..+...    .+......+. ....+|+||-|+|....
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~diiIN~tp~g~~   92 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-PLQTYDLVINATSAGLS   92 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-CCSCCSEEEECCCC---
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc-cccccceeeeccccccc
Confidence            3456779999999999999999999888899999999853  222222    1222221111 13689999999998754


Q ss_pred             HHHhhcC-CCCCCCCCcEEEeCC
Q 023897           81 SEVLNSL-PVHCLQRRTLIADVL  102 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~d~~  102 (275)
                      ....... ..  ++++.+++|+.
T Consensus        93 ~~~~~~~~~~--~~~~~~~~D~v  113 (171)
T d1p77a1          93 GGTASVDAEI--LKLGSAFYDMQ  113 (171)
T ss_dssp             ----CCCHHH--HHHCSCEEESC
T ss_pred             ccccchhhhh--hcccceeeeee
Confidence            3332222 22  45567788865

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=0.00014  Score=52.91  Aligned_cols=84  Identities=24%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEE-EcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-C
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRA-TSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-P   88 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~   88 (275)
                      |||+|+|+ |+||+.++..+.+.|+++.+ +|++..               ++  +.++|+||=-+.|+.+.+.++.. .
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------~~--~~~~DVvIDFS~p~~~~~~l~~~~~   63 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------EE--LDSPDVVIDFSSPEALPKTVDLCKK   63 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------EE--CSCCSEEEECSCGGGHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------HH--hccCCEEEEecCHHHHHHHHHHHHh
Confidence            79999995 99999999999999998764 454421               12  36899999999999888888876 3


Q ss_pred             CCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897           89 VHCLQRRTLIADVLSVKEYPRNVLLQVL  116 (275)
Q Consensus        89 ~~~l~~~~iv~d~~s~k~~~~~~l~~~l  116 (275)
                      +    +-.+|+-+++....-.+.+.+..
T Consensus        64 ~----~~p~ViGTTG~~~~~~~~i~~~a   87 (128)
T d1vm6a3          64 Y----RAGLVLGTTALKEEHLQMLRELS   87 (128)
T ss_dssp             H----TCEEEECCCSCCHHHHHHHHHHT
T ss_pred             c----CCCEEEEcCCCCHHHHHHHHHHH
Confidence            2    11355545555444455566553

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.57  E-value=3.8e-05  Score=59.24  Aligned_cols=93  Identities=18%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh--HHHHc----Cc-----eEecChHHHhccCCCEEEEecC
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ--LCHRS----GI-----SFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~--~a~~~----g~-----~~~~~~~~~~~~~aD~iilavp   76 (275)
                      ..+.++|.|||+|..+++++.+|.+.| +|++++|+.+..  .+...    ..     ....+.... ...+|++|-|+|
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dliIn~tp   92 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD-LDGVDIIINATP   92 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC-CTTCCEEEECSC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc-cchhhhhccCCc
Confidence            346689999999999999999998877 999999997532  22111    11     112333332 367899999999


Q ss_pred             chhHHHHhhc--CCCCCCCCCcEEEeCC
Q 023897           77 ILSLSEVLNS--LPVHCLQRRTLIADVL  102 (275)
Q Consensus        77 ~~~~~~v~~~--l~~~~l~~~~iv~d~~  102 (275)
                      .......-..  ++...+.++.++.|+.
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~  120 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLI  120 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred             ccccccccccchhhhhccCcccceeeec
Confidence            7643211111  1211256778888876

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.56  E-value=0.00015  Score=55.10  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+|+|.+|...+..++..|.+|+++|++++ .+.+++.|.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga   71 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA   71 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC
Confidence            345899999999999999999999999999999985 577787776

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=0.00019  Score=53.88  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChh--hh--HHH--Hc-------CceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDH--SQ--LCH--RS-------GISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~--~~--~a~--~~-------g~~~~~~~~~~~~~~a   68 (275)
                      +.|||+|||+ |.+|++++..|+..+.       .+.+++.+..  ..  .+.  ..       ++...++..+. ++++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA-FKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH-TTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhh-cccc
Confidence            4579999996 9999999999988653       2334444432  11  111  11       22445566665 5899


Q ss_pred             CEEEEecC
Q 023897           69 DVILISTS   76 (275)
Q Consensus        69 D~iilavp   76 (275)
                      |+|+++-.
T Consensus        82 dvViitaG   89 (154)
T d1y7ta1          82 DYALLVGA   89 (154)
T ss_dssp             SEEEECCC
T ss_pred             cEEEeecC
Confidence            99999863

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.51  E-value=0.00015  Score=58.52  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcCChHHHH----HHHHHHHC--CCeEE-EEcCChhh--hHHHHcCc---eEecChHHHhc-cCCCEEEEe
Q 023897            8 SSSTLKIGIIGFGPFGQF----LAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGI---SFFSDKRAFLE-ADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~s----la~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~---~~~~~~~~~~~-~~aD~iila   74 (275)
                      +.+.+||||||+|.+|+.    ...++.+.  +++|+ ++|++++.  ..+.+.++   ..+++.++++. .+-|+|++|
T Consensus        13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~   92 (237)
T d2nvwa1          13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVS   92 (237)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEEC
T ss_pred             CCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeecc
Confidence            356689999999875544    44456553  46766 68998853  34555554   45688888632 356899999


Q ss_pred             cCchhHHHHhhc
Q 023897           75 TSILSLSEVLNS   86 (275)
Q Consensus        75 vp~~~~~~v~~~   86 (275)
                      +|+....+....
T Consensus        93 tp~~~h~~~~~~  104 (237)
T d2nvwa1          93 VKVPEHYEVVKN  104 (237)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCCcchhhHHHH
Confidence            999876655543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.51  E-value=0.00032  Score=53.78  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhhh----HHHH--c-------CceEecChHHHhccCC
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHSQ----LCHR--S-------GISFFSDKRAFLEADN   68 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~~----~a~~--~-------g~~~~~~~~~~~~~~a   68 (275)
                      +..||+|+|+ |.+|.+++..|+....       .+.++|.+....    .+.+  .       .+..+++..+. .+++
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~-~~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEV-FEDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH-TTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhh-ccCC
Confidence            4458999996 9999999999987531       566778776321    1211  1       22456677775 5899


Q ss_pred             CEEEEecCc----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897           69 DVILISTSI----------------LSLSEVLNSL-PVHCLQRRTLIADVLS  103 (275)
Q Consensus        69 D~iilavp~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s  103 (275)
                      |+||++-..                ..+.++.+.+ .+  .+++.+|+-+++
T Consensus       102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~--a~~~~~vlvv~N  151 (175)
T d7mdha1         102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV--ASKNVKVLVVGN  151 (175)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--SCTTCEEEECSS
T ss_pred             ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhh--CCCCcEEEEecC
Confidence            999998632                1244555555 44  455666655554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.44  E-value=8.3e-05  Score=59.68  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +..++||.|||+|..|.+.|..|+++|++|++++|+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3456799999999999999999999999999999874

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.44  E-value=0.00023  Score=54.79  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=28.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-CeEEE-EcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-HILRA-TSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-~~V~~-~dr~~~   45 (275)
                      |.||+|.|+|+||+.+++++.++. .+|++ .|+++.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~   37 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN   37 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence            458999999999999999999874 57665 456553

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.41  E-value=5.3e-05  Score=55.11  Aligned_cols=77  Identities=14%  Similarity=0.065  Sum_probs=52.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH-CCCeEEE-EcCChhhhHHHHcCceEe--cChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK-QGHILRA-TSRTDHSQLCHRSGISFF--SDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~-~g~~V~~-~dr~~~~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      +.+|.|+|+|.+|.+++..+.. .++++++ +|.++...-..-.|+.+.  +.+++.+.+..+++++++|.....++++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~   82 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADL   82 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHH
Confidence            4589999999999999988754 4678775 577765322122355443  33444333567888999998877777776


Q ss_pred             C
Q 023897           87 L   87 (275)
Q Consensus        87 l   87 (275)
                      +
T Consensus        83 l   83 (126)
T d2dt5a2          83 L   83 (126)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.40  E-value=0.00022  Score=52.44  Aligned_cols=105  Identities=10%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             CCeEEEEcC----ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897           11 TLKIGIIGF----GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS   86 (275)
Q Consensus        11 ~~~I~IIG~----G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~   86 (275)
                      .++|+|||+    +..|..+.+.|.+.||++..+..++...  .-.|...+.++.+. -..-|++++++|+..+.+++++
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~--~i~g~~~~~~l~~i-~~~iD~v~v~~p~~~v~~~v~~   89 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDL-KEPVDILDVFRPPSALMDHLPE   89 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGC-CSCCSEEEECSCHHHHTTTHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc--eeeceecccchhhc-cCCCceEEEeccHHHHHHHHHH
Confidence            357999995    8999999999999999999998765311  11366777888874 4567999999999998888888


Q ss_pred             C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897           87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC  124 (275)
Q Consensus        87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~  124 (275)
                      . .   +....+++-.+....+..+..++   .+.++|.
T Consensus        90 ~~~---~g~k~i~~q~G~~~~e~~~~a~~---~Gi~vV~  122 (136)
T d1iuka_          90 VLA---LRPGLVWLQSGIRHPEFEKALKE---AGIPVVA  122 (136)
T ss_dssp             HHH---HCCSCEEECTTCCCHHHHHHHHH---TTCCEEE
T ss_pred             HHh---hCCCeEEEecCccCHHHHHHHHH---cCCEEEc
Confidence            7 3   23445666555443333333222   2455553

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=0.00013  Score=56.33  Aligned_cols=90  Identities=24%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHC-CCeEEE-EcCC--hh--hhHHHH----cCc-----eEecChHHHhccCCCEEEEe
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQ-GHILRA-TSRT--DH--SQLCHR----SGI-----SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~-~dr~--~~--~~~a~~----~g~-----~~~~~~~~~~~~~aD~iila   74 (275)
                      |+||+||| .|..|+-|.+.|.++ .++|.. +.++  ..  ......    .+.     ....+.... ..+.|++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dvvf~a   79 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDF-SADVDVVFLA   79 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGT-CTTCCEEEEC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhh-hcccceeecc
Confidence            68999999 699999999999987 456543 3222  11  111110    111     222333332 3678999999


Q ss_pred             cCchhHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           75 TSILSLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        75 vp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      +|.....+....+    ...+..++|.++-.
T Consensus        80 lp~~~s~~~~~~~----~~~~~~vIDlSadf  106 (179)
T d2g17a1          80 TAHEVSHDLAPQF----LQAGCVVFDLSGAF  106 (179)
T ss_dssp             SCHHHHHHHHHHH----HHTTCEEEECSSTT
T ss_pred             ccchhHHHHhhhh----hhcCceeecccccc
Confidence            9998887777776    34578999988643

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00049  Score=52.77  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChh-hhHH--H--HcC-ce-EecChHHHhccCCCEEEEecCchhH
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDH-SQLC--H--RSG-IS-FFSDKRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~-~~~a--~--~~g-~~-~~~~~~~~~~~~aD~iilavp~~~~   80 (275)
                      |+||+|+| .|..|+-+.+.|.++- ++|... .++.. ....  .  ..+ .. ...+.++. .+++|++|+|+|....
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~-~~~~dvvf~a~p~~~s   79 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKV-SKNCDVLFTALPAGAS   79 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHH-HHHCSEEEECCSTTHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHh-ccccceEEEccccHHH
Confidence            57999999 6999999999998864 365543 33322 1111  0  011 11 12345553 3679999999999876


Q ss_pred             HHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           81 SEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        81 ~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      .+.....      .+..|+|.++--
T Consensus        80 ~~~~~~~------~~~~VIDlSadf   98 (176)
T d1vkna1          80 YDLVREL------KGVKIIDLGADF   98 (176)
T ss_dssp             HHHHTTC------CSCEEEESSSTT
T ss_pred             HHHHHhh------ccceEEecCccc
Confidence            6665442      467899998743

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.30  E-value=0.00014  Score=58.68  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++..+||.|||+|.-|.++|..|+++|++|+++++++
T Consensus         1 ~~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           1 SPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3566899999999999999999999999999999875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.29  E-value=0.00047  Score=52.67  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-CeEE-EEcCChh--hhHHHHcC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-HILR-ATSRTDH--SQLCHRSG   53 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-~~V~-~~dr~~~--~~~a~~~g   53 (275)
                      .+||||.|+|+||+.+.+++.+.. .+|. +.|.++.  ...+.+.+
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~   48 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG   48 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcC
Confidence            469999999999999999998764 5655 4566553  23344444

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.28  E-value=0.00082  Score=56.50  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh-----hHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS-----QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE   82 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~-----~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~   82 (275)
                      ...+++|||+|..+.+-+.+|... . .+|.+|+|+++.     ......++....+.+++ +.+||+|+.|||...  .
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a-~~~aDiV~taT~s~~--P  200 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEE-ASRCDVLVTTTPSRK--P  200 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHH-HTSSSEEEECCCCSS--C
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhh-hccccEEEEeccCcc--c
Confidence            346899999999999999998764 3 389999999852     22334566666666675 489999999999643  2


Q ss_pred             HhhcCCCCCCCCCcEEEeCCCCC
Q 023897           83 VLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      ++.. ..  +++|+.|.-+++.+
T Consensus       201 ~~~~-~~--l~~G~hv~~iGs~~  220 (320)
T d1omoa_         201 VVKA-EW--VEEGTHINAIGADG  220 (320)
T ss_dssp             CBCG-GG--CCTTCEEEECSCCS
T ss_pred             ccch-hh--cCCCCeEeecCCcc
Confidence            2211 12  67888888777644

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00041  Score=52.48  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHC-CCeEE-EEcCChh--h-h------HHHHcCceEecChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQ-GHILR-ATSRTDH--S-Q------LCHRSGISFFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~-g~~V~-~~dr~~~--~-~------~a~~~g~~~~~~~~~~~~~~aD~iilavp~   77 (275)
                      ..+||+|+|+ |+||+.+++.+.+. ++++. +++|...  . .      .....++....++++. ...+|+||=-+.+
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~-~~~~DViIDFs~p   81 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAV-KDDFDVFIDFTRP   81 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTT-TTSCSEEEECSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHH-hcccceEEEeccH
Confidence            4579999995 99999999988876 56665 4666542  1 1      1123455677787774 5899999999999


Q ss_pred             hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhh
Q 023897           78 LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQV  115 (275)
Q Consensus        78 ~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~  115 (275)
                      +...+.++.. ..    .-.+|+-+++....-.+.+++.
T Consensus        82 ~~~~~~~~~a~~~----~~~~ViGTTG~~~~~~~~i~~~  116 (162)
T d1diha1          82 EGTLNHLAFCRQH----GKGMVIGTTGFDEAGKQAIRDA  116 (162)
T ss_dssp             HHHHHHHHHHHHT----TCEEEECCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc----cceeEEecCCCcHHHHHHHHHH
Confidence            9888888765 32    1235554555444444555554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.20  E-value=0.00041  Score=50.40  Aligned_cols=73  Identities=12%  Similarity=0.173  Sum_probs=59.3

Q ss_pred             CCCeEEEEcC----ChHHHHHHHHHHHCC-CeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           10 STLKIGIIGF----GPFGQFLAKTMIKQG-HILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        10 ~~~~I~IIG~----G~mG~sla~~L~~~g-~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      ...+|+|||+    |.+|..+.+.|.+.| ++|+.++++.+.    -.|...+.++.++ -...|++++++|+..+.+++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dl-p~~vDlvvi~vp~~~~~~~~   81 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDI-PDEIDLAIIVVPKRFVKDTL   81 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSC-SSCCSEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhc-CCCCceEEEecChHHhHHHH
Confidence            4468999995    999999999998766 688888776421    1477788888884 46789999999999999999


Q ss_pred             hcC
Q 023897           85 NSL   87 (275)
Q Consensus        85 ~~l   87 (275)
                      +++
T Consensus        82 ~~~   84 (129)
T d2csua1          82 IQC   84 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            988

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00014  Score=55.28  Aligned_cols=68  Identities=21%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-ec-----ChHHHhccCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-FS-----DKRAFLEADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~~-----~~~~~~~~~aD~iilavp~   77 (275)
                      ...+|.|+|+|.+|...++.++..|.+|+++|++++ .+.+++.|... ..     +..+......|+++.|+..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence            456899999999999999888888999999999985 57788888632 11     1111122456888887664

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00043  Score=52.45  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe---cChHHH--hccCCCEEEEecCchh-HHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF---SDKRAF--LEADNDVILISTSILS-LSE   82 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~---~~~~~~--~~~~aD~iilavp~~~-~~~   82 (275)
                      ...+|.|+|+|.+|...++.++..|.++++.+++++ .+.+++.|...+   .+....  ..+..|++|-|+.... +..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~  109 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  109 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHH
Confidence            456899999999999999999999999889988875 567788886321   111111  1246899999988653 444


Q ss_pred             HhhcCCCCCCCCCcEEEeCC
Q 023897           83 VLNSLPVHCLQRRTLIADVL  102 (275)
Q Consensus        83 v~~~l~~~~l~~~~iv~d~~  102 (275)
                      .++-     +.++..++.++
T Consensus       110 ~~~~-----l~~~G~iv~~G  124 (168)
T d1uufa2         110 FTTL-----LKRDGTMTLVG  124 (168)
T ss_dssp             HHTT-----EEEEEEEEECC
T ss_pred             HHHH-----HhcCCEEEEec
Confidence            4443     33444555454

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.16  E-value=0.0005  Score=52.55  Aligned_cols=77  Identities=12%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEe-----cChHHHhc-----cCCCEEEEecCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFF-----SDKRAFLE-----ADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~-----~~~~~~~~-----~~aD~iilavp~   77 (275)
                      ...+|.|+|+|.+|...++.++..|. +|++.|++++ .+.+++.|...+     .++.+.+.     ...|++|-|+..
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            34589999999999999999998896 7999999985 577888886321     11111111     136888888875


Q ss_pred             hh-HHHHhhc
Q 023897           78 LS-LSEVLNS   86 (275)
Q Consensus        78 ~~-~~~v~~~   86 (275)
                      .. +...++-
T Consensus       107 ~~~~~~a~~~  116 (174)
T d1jqba2         107 SETLSQAVKM  116 (174)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            43 3444444

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00042  Score=53.22  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+|+|.+|...+..++..|. +|++.+++++ .+.+++.|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence            45689999999999999999999997 8999999985 567777776

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.13  E-value=0.00024  Score=60.24  Aligned_cols=92  Identities=20%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHC-CC-eEEEEcCChhh--hHHH----HcCc--eEecChHHHhccCCCEEEEecCchh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQ-GH-ILRATSRTDHS--QLCH----RSGI--SFFSDKRAFLEADNDVILISTSILS   79 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~-g~-~V~~~dr~~~~--~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~   79 (275)
                      ...+++|||+|..+..-+.++... +. +|.+|+|+++.  +.+.    ..|+  ....+++++ +++||+|+.|++...
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~ea-v~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEA-VKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHH-HTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHH-HhcCCceeeccccCC
Confidence            346899999999999999888664 43 89999999842  2222    2355  457788887 589999999996543


Q ss_pred             HHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           80 LSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        80 ~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      ...++.. ..  +++|+.|.-+++-+
T Consensus       206 ~~Pv~~~-~~--l~pG~hI~aiGs~~  228 (340)
T d1x7da_         206 YATIITP-DM--LEPGMHLNAVGGDC  228 (340)
T ss_dssp             EEEEECG-GG--CCTTCEEEECSCCB
T ss_pred             CCcccch-hh--cCCCCEEeecccch
Confidence            2222222 12  67888887777643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.0004  Score=51.76  Aligned_cols=69  Identities=9%  Similarity=-0.022  Sum_probs=50.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--h---HHHHcCceEe----cC---hHHHhccCCCEEEEecCch
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--Q---LCHRSGISFF----SD---KRAFLEADNDVILISTSIL   78 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~---~a~~~g~~~~----~~---~~~~~~~~aD~iilavp~~   78 (275)
                      +.+|-|+|+|.+|..+++.|.+.|++|++.+.+++.  .   .....|+.+.    ++   ++++-+++||.++++++.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence            346999999999999999999999999999988742  1   2233455322    12   2232247899999999886


Q ss_pred             h
Q 023897           79 S   79 (275)
Q Consensus        79 ~   79 (275)
                      .
T Consensus        83 ~   83 (153)
T d1id1a_          83 A   83 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.12  E-value=0.00099  Score=51.29  Aligned_cols=79  Identities=14%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChh-hhHHH--H----cCce-EecChHHHhccCCCEEEEecC
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDH-SQLCH--R----SGIS-FFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~-~~~a~--~----~g~~-~~~~~~~~~~~~aD~iilavp   76 (275)
                      +.++.||+||| +|..|+-|.+.|.++- +++... .++.. .....  .    .... .....++ ...++|++|+|+|
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~alp   80 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDA-DFSNVDAVFCCLP   80 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGC-CGGGCSEEEECCS
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhh-hhcccceeeeccc
Confidence            34678999999 6999999999999864 465544 33322 11111  1    1111 1111222 2368999999999


Q ss_pred             chhHHHHhhcC
Q 023897           77 ILSLSEVLNSL   87 (275)
Q Consensus        77 ~~~~~~v~~~l   87 (275)
                      .....++...+
T Consensus        81 ~~~s~~~~~~l   91 (183)
T d2cvoa1          81 HGTTQEIIKGL   91 (183)
T ss_dssp             SSHHHHHHHTS
T ss_pred             cchHHHHHHHH
Confidence            99888888776

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.12  E-value=0.00077  Score=53.81  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSIL   78 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~   78 (275)
                      +...++|.|-|.|++|+.+|+.|.+.|..|++.|.++. .. ...+.|.... ++++....+||+++-|--..
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~  107 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA  107 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccccc
Confidence            45778999999999999999999999999999999874 33 3344566554 34443446899998885544

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00023  Score=46.86  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +++|||||.|..|+.++.+-.+-|+++.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            36899999999999999999999999999998764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.07  E-value=0.0011  Score=50.42  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-CeEEE-EcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-HILRA-TSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-~~V~~-~dr~~   44 (275)
                      |.||||-|+|+||+.+.+.+...+ .+|.. .|+++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~   36 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRP   36 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSC
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCc
Confidence            468999999999999999998775 46554 45554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.01  E-value=0.00093  Score=50.29  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+|+|.+|...+..++..|.+|++.+++++ .+.+++.|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga   72 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA   72 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence            356899999999999999999999999999999985 567777776

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.98  E-value=0.00055  Score=51.24  Aligned_cols=88  Identities=14%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCChhh-h-H-HHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTDHS-Q-L-CHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL   84 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~~~-~-~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~   84 (275)
                      .||+||| .|..|.-|.+.|.++.+   ++.....+... + . ............+.. ..+.|++|+|+|.....+..
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~-~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETA-FEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTT-TTTCSEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhh-hhhhhhhhhccCccchhhHH
Confidence            4899999 59999999999988754   34444322211 1 0 000111112222232 47899999999998777776


Q ss_pred             hcCCCCCCCCCcEEEeCCCC
Q 023897           85 NSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        85 ~~l~~~~l~~~~iv~d~~s~  104 (275)
                      .+.    ...+..|+|.++-
T Consensus        81 ~~~----~~~~~~VIDlSsd   96 (154)
T d2gz1a1          81 PYA----VKAGVVVVDNTSY   96 (154)
T ss_dssp             HHH----HHTTCEEEECSST
T ss_pred             hhh----ccccceehhcChh
Confidence            665    4568899998864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0013  Score=49.58  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CCCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|||- ..+|..++..|.+.|..|+.++...             .++.+. ..+||+||.|+....+   +.
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------~~l~~~-~~~ADivI~a~G~p~~---i~   95 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHH-VENADLLIVAVGKPGF---IP   95 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHH-HHHCSEEEECSCCTTC---BC
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------chhHHH-HhhhhHhhhhccCccc---cc
Confidence            3456789999995 5699999999999999999887543             234443 3789999999986532   11


Q ss_pred             cCCCCCCCCCcEEEeCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~  104 (275)
                      . ..  +++|++++|++..
T Consensus        96 ~-~~--vk~g~vvIDvGi~  111 (166)
T d1b0aa1          96 G-DW--IKEGAIVIDVGIN  111 (166)
T ss_dssp             T-TT--SCTTCEEEECCCE
T ss_pred             c-cc--cCCCcEEEecCce
Confidence            1 23  7899999999854

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.96  E-value=0.0003  Score=57.08  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=31.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |+|+|||+|.-|.+.|..|+++|++|+++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            7899999999999999999999999999998753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00064  Score=52.24  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...+||+|||.|.-|.+.|..|++.||+|+++++++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            4567999999999999999999999999999999864

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0022  Score=48.55  Aligned_cols=79  Identities=6%  Similarity=0.084  Sum_probs=60.1

Q ss_pred             CCCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897            7 SSSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN   85 (275)
Q Consensus         7 ~~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~   85 (275)
                      .....++|.|||- ..+|..+|..|.+.|..|+.++...             .++.+. ..++|+++.|++...+   +.
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t-------------~~l~~~-~~~aDivi~a~G~~~~---i~   97 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT-------------AHLDEE-VNKGDILVVATGQPEM---VK   97 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHH-HTTCSEEEECCCCTTC---BC
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEeccc-------------ccHHHH-Hhhccchhhccccccc---cc
Confidence            3456789999995 6699999999999999999998653             233343 4899999999987542   11


Q ss_pred             cCCCCCCCCCcEEEeCCCCC
Q 023897           86 SLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l~~~~l~~~~iv~d~~s~k  105 (275)
                      . ..  +++|.+++|++...
T Consensus        98 ~-~~--vk~g~iviDvgi~~  114 (170)
T d1a4ia1          98 G-EW--IKPGAIVIDCGINY  114 (170)
T ss_dssp             G-GG--SCTTCEEEECCCBC
T ss_pred             c-cc--ccCCCeEeccCccc
Confidence            1 23  78999999998643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.84  E-value=0.0057  Score=46.30  Aligned_cols=47  Identities=11%  Similarity=0.054  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceE
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISF   56 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~   56 (275)
                      ...+|.|+|+|.+|...+..++..|. +|++.|++++ .+.+++.|...
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~   75 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE   75 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE
Confidence            44689999999999999999999986 7999999985 57888888743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.81  E-value=0.0012  Score=50.25  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCce-Ee----cChHHHhc----cCCCEEEEecCch
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGIS-FF----SDKRAFLE----ADNDVILISTSIL   78 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~-~~----~~~~~~~~----~~aD~iilavp~~   78 (275)
                      ...+|.|+|+|.+|...+..++..|. .|++.++++. .+.+++.|.. +.    .+..+.+.    ...|++|-|+...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            45689999999999999999988887 5667888884 5777787763 21    12222110    1368888888765


Q ss_pred             hHH
Q 023897           79 SLS   81 (275)
Q Consensus        79 ~~~   81 (275)
                      ...
T Consensus       108 ~~~  110 (174)
T d1f8fa2         108 EIL  110 (174)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.81  E-value=0.0022  Score=46.73  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcC----------ChHHHHHHHHHHHCCCeEEEEcCChhh-------hHH-----HHcCceEecChHHHhcc
Q 023897            9 SSTLKIGIIGF----------GPFGQFLAKTMIKQGHILRATSRTDHS-------QLC-----HRSGISFFSDKRAFLEA   66 (275)
Q Consensus         9 ~~~~~I~IIG~----------G~mG~sla~~L~~~g~~V~~~dr~~~~-------~~a-----~~~g~~~~~~~~~~~~~   66 (275)
                      ....||+|+|+          +.-.-.++..|.+.|.+|.+||+.-..       ...     ...+.....++.++ +.
T Consensus        11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-i~   89 (136)
T d1mv8a3          11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEV-VA   89 (136)
T ss_dssp             SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHH-HH
T ss_pred             cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhh-hh
Confidence            34579999996          345778899999999999999973210       000     11123456788886 48


Q ss_pred             CCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897           67 DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        67 ~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k  105 (275)
                      ++|+||++++-+...++...     +.++.+|+|+.++-
T Consensus        90 ~~D~ivi~t~h~~f~~l~~~-----~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          90 SSDVLVLGNGDELFVDLVNK-----TPSGKKLVDLVGFM  123 (136)
T ss_dssp             HCSEEEECSCCGGGHHHHHS-----CCTTCEEEESSSCC
T ss_pred             hceEEEEEeCCHHHHHHHHH-----hcCCCEEEECCCCC
Confidence            99999999999887776554     34567999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.81  E-value=0.00053  Score=52.66  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=32.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~   45 (275)
                      ..||+|||+|..|.+.|..|++.|+ +|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4799999999999999999999998 5999998864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.80  E-value=0.00064  Score=56.05  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ....+||.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34557999999999999999999999999999998763

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.014  Score=42.22  Aligned_cols=84  Identities=12%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCC
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPV   89 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~   89 (275)
                      ||+|+| .|+||+.+++.+.+. ++++. ++|+....              ......++|+||=-+.|+.+.+.++..  
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~--------------~~~~~~~~DvvIDFS~p~~~~~~~~~~--   64 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL--------------SLLTDGNTEVVIDFTHPDVVMGNLEFL--   64 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT--------------HHHHTTTCSEEEECCCTTTHHHHHHHH--
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch--------------hhhccccCCEEEEcccHHHHHHHHHHH--
Confidence            799999 599999999987765 57765 46654321              111125789999999998888888776  


Q ss_pred             CCCCCCc-EEEeCCCCChhHHHHHHh
Q 023897           90 HCLQRRT-LIADVLSVKEYPRNVLLQ  114 (275)
Q Consensus        90 ~~l~~~~-iv~d~~s~k~~~~~~l~~  114 (275)
                        +..+. +|+-+++....-.+.+++
T Consensus        65 --~~~~~~~ViGTTG~~~~~~~~l~~   88 (135)
T d1yl7a1          65 --IDNGIHAVVGTTGFTAERFQQVES   88 (135)
T ss_dssp             --HHTTCEEEECCCCCCHHHHHHHHH
T ss_pred             --HhcCCCEEEeccccchhHHHHHHH
Confidence              12233 455444444434455555

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.74  E-value=0.01  Score=44.92  Aligned_cols=71  Identities=11%  Similarity=0.035  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEecCh-------HHHh----ccCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFSDK-------RAFL----EADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~~~-------~~~~----~~~aD~iilavp   76 (275)
                      ...+|.|+|+|.+|...+..++..|. .|++.|+++. .+.+++.|...+-+.       ....    -...|++|-|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            44689999999999999999999997 7888999985 578888887422111       1100    135688888887


Q ss_pred             chhH
Q 023897           77 ILSL   80 (275)
Q Consensus        77 ~~~~   80 (275)
                      ....
T Consensus       108 ~~~~  111 (174)
T d1e3ia2         108 TAQT  111 (174)
T ss_dssp             CHHH
T ss_pred             cchH
Confidence            6543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.69  E-value=0.01  Score=44.93  Aligned_cols=46  Identities=11%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ....|.|+|+|.+|...+..++..|. +|++.|++++ .+.+++.|..
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence            34579999999999999999999985 8999999985 6788888874

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.66  E-value=0.00089  Score=56.02  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=32.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+||+|||+|.-|.+.|..|+++|++|.++++++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            57999999999999999999999999999998875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.65  E-value=0.0015  Score=48.96  Aligned_cols=46  Identities=20%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+|.+|...+..++..|.+|++.+++++ ...+++.|..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~   73 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD   73 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence            346899999999999999999999999999999985 5677777763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.56  E-value=0.0026  Score=49.06  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=36.8

Q ss_pred             CCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            5 SPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         5 ~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++.+.+.++|.|.| .|.+|..+|+.|.+.|.+|++.+|+++
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            34567888999999 699999999999999999999999984

>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.52  E-value=0.0016  Score=45.86  Aligned_cols=90  Identities=9%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             ChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHH-HCHHHHHH
Q 023897          174 SCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI-HNRFAKQE  242 (275)
Q Consensus       174 ~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~-~N~~~~~~  242 (275)
                      ++++.|.+++++++.|.++++   ++.+    .|++.   ..++...|.....+.... +.+|..+.+-+. .|..+.+.
T Consensus         1 dE~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s-~~~~~~L~~~V~SpgGtT~ag   79 (111)
T d1yqga1           1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQT-GEDFEKLQKNVTSKGGTTHEA   79 (111)
T ss_dssp             STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHTCCTTSHHHHH
T ss_pred             CHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHhcccCcchhHHHH
Confidence            467889999999999987654   4444    45553   458889999999998766 667766665544 56677899


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHh
Q 023897          243 LLDLEAAFEKVKHKLQQKMEEVQL  266 (275)
Q Consensus       243 l~~~~~~l~~~~~~l~~~~~~~~~  266 (275)
                      |+.|.+  ..+++.+.+...++..
T Consensus        80 l~~l~~--~~~~~~i~~ai~aA~~  101 (111)
T d1yqga1          80 VEAFRR--HRVAEAISEGVCACVR  101 (111)
T ss_dssp             HHHHHH--TTHHHHHHHHHHHHHH
T ss_pred             HHHHHH--CChHHHHHHHHHHHHH
Confidence            999987  3688888888777654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.48  E-value=0.00093  Score=54.61  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+|.|||+|..|.++|..|++.|++|.++++++.
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3799999999999999999999999999998763

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.47  E-value=0.0013  Score=53.13  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +||.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            6899999999999999999999999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.002  Score=45.56  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..||.|||.|.+|.-+|..|++.|++|++++|.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            4689999999999999999999999999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.44  E-value=0.0021  Score=45.43  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            46899999999999999999999999999987753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.44  E-value=0.0013  Score=53.15  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||+|.+|.+.|..|+++|++|+++++++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999875

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.41  E-value=0.0017  Score=54.41  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~   45 (275)
                      +.++||+|||+|.-|.+.|..|++.|  ++|++++++..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            45678999999999999999998766  69999998864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.40  E-value=0.0025  Score=45.40  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            46899999999999999999999999999988753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.37  E-value=0.0029  Score=45.20  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +...+|.|||.|.+|.-+|..|++.|++|+++++.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            345799999999999999999999999999998765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.36  E-value=0.0025  Score=45.11  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..||.|||.|.+|.-+|..|++.|.+|+++.|.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4689999999999999999999999999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.0025  Score=45.49  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++.|||.|.+|.-+|..|.+.|.+|+++.+++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            4689999999999999999999999999998865

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.35  E-value=0.002  Score=51.82  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~   45 (275)
                      .++|.|||+|.-|.++|..|+++|. +|.++++++.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            3799999999999999999999995 8999998763

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.34  E-value=0.00025  Score=56.27  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=24.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHIL   37 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V   37 (275)
                      |||+|||+|.+|.+.|..|+++|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            79999999999999999999999753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.29  E-value=0.0017  Score=52.67  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +++||.|+| .|.+|+.++..|.+.|++|++.+|++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            468999999 59999999999999999999999976

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.27  E-value=0.0024  Score=45.61  Aligned_cols=34  Identities=15%  Similarity=-0.029  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++.|||.|.+|.-+|..|++.|.+|+++.+++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            3589999999999999999999999999998763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.24  E-value=0.0034  Score=52.91  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +++.|||.|.| .|.+|+.++..|.++||+|+++|+..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            34678999999 79999999999999999999998765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.23  E-value=0.0018  Score=46.64  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c---C---hHHHhccCCCEEEEecCchhH
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S---D---KRAFLEADNDVILISTSILSL   80 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~---~---~~~~~~~~aD~iilavp~~~~   80 (275)
                      .|-|+|.|.+|..+++.|.  |++|.+.+.+++ .+.....|+.+. .   +   +.++-+.+|+.++++++.+..
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~   75 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSE   75 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence            5889999999999999995  556788888875 345555666321 1   2   222224688999999887653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.23  E-value=0.002  Score=50.61  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      .||.|||+|.-|.+.|..|+++|+ +|+++++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            479999999999999999999996 799999875

>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: ProC C-terminal domain-like
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.19  E-value=0.006  Score=42.17  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHH-HCHHHHHHHHH
Q 023897          177 EHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI-HNRFAKQELLD  245 (275)
Q Consensus       177 ~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~-~N~~~~~~l~~  245 (275)
                      +.|.+++++++.|.+++   .++.+    .|++.   ..++...|.....+.... +.+|+.+.+-+. .|..+.+.|..
T Consensus         2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~-~~~p~~l~~~V~SpgGtT~agl~~   80 (104)
T d2ahra1           2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTS-SQSPHDFIDAICSPGGTTIAGLME   80 (104)
T ss_dssp             GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHS-SSCHHHHHHHHCCTTSHHHHHHHH
T ss_pred             CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHhccCCChhHHHHHHH
Confidence            57999999999998765   35554    35543   457888999999988776 667776665554 55677899999


Q ss_pred             HHHHHHHHHHHHhcchhHHHhh
Q 023897          246 LEAAFEKVKHKLQQKMEEVQLE  267 (275)
Q Consensus       246 ~~~~l~~~~~~l~~~~~~~~~~  267 (275)
                      |.+  ..+++.+.++..++..+
T Consensus        81 le~--~~~~~~i~~a~~aA~~R  100 (104)
T d2ahra1          81 LER--LGLTATVSSAIDKTIDK  100 (104)
T ss_dssp             HHH--HTHHHHHHHHHHHHHHH
T ss_pred             HHH--CChHHHHHHHHHHHHHH
Confidence            987  46899998888887654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.0034  Score=44.71  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=31.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+|.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5899999999999999999999999999998753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.15  E-value=0.0023  Score=52.28  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=47.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh---h------HHHHcCceEe----cC---hHHHhccCCCEEE
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS---Q------LCHRSGISFF----SD---KRAFLEADNDVIL   72 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~---~------~a~~~g~~~~----~~---~~~~~~~~aD~ii   72 (275)
                      +++||.|+| +|.+|+.++..|.+.||+|++.+|++..   .      .....++.+.    .+   ..+. ..+++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~-~~~~~~~~   80 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA-LKQVDVVI   80 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH-HTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhh-ccCcchhh
Confidence            567999999 6999999999999999999999987531   1      1122344322    12   2232 36888888


Q ss_pred             EecCc
Q 023897           73 ISTSI   77 (275)
Q Consensus        73 lavp~   77 (275)
                      .+.+.
T Consensus        81 ~~~~~   85 (312)
T d1qyda_          81 SALAG   85 (312)
T ss_dssp             ECCCC
T ss_pred             hhhhh
Confidence            88765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0037  Score=51.00  Aligned_cols=37  Identities=27%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+..||.|||+|.=|.+-|..|+++|++|+++..++.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3456899999999999999999999999999987753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.08  E-value=0.0046  Score=44.72  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||.|.+|.-+|..|++.|++|+++++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            34789999999999999999999999999998875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0043  Score=44.34  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=31.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            3689999999999999999999999999999875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.03  E-value=0.002  Score=51.97  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=31.1

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |||.|.|+ |.+|+.+++.|.++||+|++.+|++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            89999995 9999999999999999999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.03  E-value=0.0056  Score=43.30  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ...+|.|||.|.+|.=+|..|++.|.+|++..+++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            44789999999999999999999999999987764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.02  E-value=0.0041  Score=52.18  Aligned_cols=68  Identities=18%  Similarity=0.275  Sum_probs=48.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhH----HHHcCceEe----cC----hHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQL----CHRSGISFF----SD----KRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~----a~~~g~~~~----~~----~~~~~~~~aD~iilavp   76 (275)
                      ++++|.|+| +|.+|+++++.|.+.||+|++..|++....    ....|++..    .+    .+.+ ...+|.+++..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a-~~~~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTL-FEGAHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHH-HTTCSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHH-hcCCceEEeecc
Confidence            567899999 699999999999999999999999874221    122354321    12    2233 478899988877


Q ss_pred             ch
Q 023897           77 IL   78 (275)
Q Consensus        77 ~~   78 (275)
                      ..
T Consensus        81 ~~   82 (350)
T d1xgka_          81 SQ   82 (350)
T ss_dssp             ST
T ss_pred             cc
Confidence            53

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0036  Score=48.69  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.--|.|||+|.-|.+.|..|+++|++|.++++++.
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            344699999999999999999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.00  E-value=0.0044  Score=48.24  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=43.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCe--EEEEcCChhhhHHHHcCceE-------ecChHHHhccCCCEEEEecC
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHI--LRATSRTDHSQLCHRSGISF-------FSDKRAFLEADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~--V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp   76 (275)
                      .+++|.|.| .|.+|+.+++.|.+.|++  |+...|++........++..       ..+..++ ++++|.|+.+..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPA-FQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHH-HTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccc-cccceeeEEEEe
Confidence            467899999 699999999999999975  44566777432222223311       1122343 478999987754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.00  E-value=0.005  Score=48.73  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ....+|.|||+|.-|.+.|..|++.|++|+++++++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4567999999999999999999999999999998764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0037  Score=47.36  Aligned_cols=91  Identities=10%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc-------Cce----Ee-cChHHHhccCCCEEEEe
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS-------GIS----FF-SDKRAFLEADNDVILIS   74 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~-------g~~----~~-~~~~~~~~~~aD~iila   74 (275)
                      ....+++.|||- ..+|..+|..|.+.|..|+.++.+.........       +..    .. +.+.+. ...+|++|.+
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-~~~aDIvIsa  104 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKC-SLDSDVVITG  104 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHH-HHHCSEEEEC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhc-cccCCEEEEc
Confidence            567789999995 467999999999999999988765421100000       110    01 113443 3579999999


Q ss_pred             cCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897           75 TSILSLSEVLNSLPVHCLQRRTLIADVLSV  104 (275)
Q Consensus        75 vp~~~~~~v~~~l~~~~l~~~~iv~d~~s~  104 (275)
                      ++..... +-.  ..  +++|.+++|++..
T Consensus       105 vG~p~~~-i~~--d~--ik~GavvIDvGi~  129 (171)
T d1edza1         105 VPSENYK-FPT--EY--IKEGAVCINFACT  129 (171)
T ss_dssp             CCCTTCC-BCT--TT--SCTTEEEEECSSS
T ss_pred             cCCCccc-cCh--hh--cccCceEeecccc
Confidence            9875320 001  23  7899999999853

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.89  E-value=0.0036  Score=49.28  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~   45 (275)
                      .||+|||+|.-|.+.|..|+++  |++|+++++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5999999999999999999875  789999998864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.003  Score=52.18  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |..|.|||+|.-|.+.|..|+++|++|.++++++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            35799999999999999999999999999998764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.88  E-value=0.0046  Score=43.40  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++.|||.|.+|.-+|..|++.|++|+++++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3689999999999999999999999999998865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.86  E-value=0.011  Score=44.50  Aligned_cols=45  Identities=18%  Similarity=0.286  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+|+|.+|...+..++..|. .|++.+++++ .+.+++.|.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga   78 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA   78 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc
Confidence            34689999999999999988887774 7888999985 566666665

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0044  Score=51.79  Aligned_cols=32  Identities=16%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      |||.|+| .|.+|+.+++.|.+.|++|++.||.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            7999999 6999999999999999999999863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.79  E-value=0.071  Score=39.60  Aligned_cols=46  Identities=13%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+|.+|...+..++..|. +|++.|++++ .+.+++.|+.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd   75 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT   75 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence            44689999999999999999988875 7999999985 5788888873

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.77  E-value=0.044  Score=40.98  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCce
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...+|.|+|+|-+|.+.+..++..|. +|++.+++++ .+.+.+.|..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~   75 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT   75 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe
Confidence            44689999999999999999999984 8999999985 5677777763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.76  E-value=0.034  Score=41.44  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEecC-------hHHHh----ccCCCEEEEecC
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFSD-------KRAFL----EADNDVILISTS   76 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~~-------~~~~~----~~~aD~iilavp   76 (275)
                      ...+|.|+|+|-+|...+..++..|. .|++.+++++ .+.+++.|...+-+       ..+.+    -...|++|-++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            45689999999999999988888885 6778888885 56788888642211       11110    024677777776


Q ss_pred             chhHHHHhhcC
Q 023897           77 ILSLSEVLNSL   87 (275)
Q Consensus        77 ~~~~~~v~~~l   87 (275)
                      .....+....+
T Consensus       108 ~~~~~~~~~~~  118 (176)
T d2fzwa2         108 NVKVMRAALEA  118 (176)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHh
Confidence            65544433333

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.75  E-value=0.0043  Score=50.79  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      .+|.|||+|.+|.+.|..|++.|. +|+++++++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            379999999999999999999995 799999875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0058  Score=48.30  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=46.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCChh-hh--HHHHcCce-----EecChHHHhccCCCEEEEecCc
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTDH-SQ--LCHRSGIS-----FFSDKRAFLEADNDVILISTSI   77 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~--~a~~~g~~-----~~~~~~~~~~~~aD~iilavp~   77 (275)
                      |++++|.|.| +|.+|+.+.+.|.+.|.  +|++.+|++. ..  ........     -..++.++ ..++|++|.|+..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~-~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASA-FQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGG-GSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccc-ccccccccccccc
Confidence            4567899999 79999999999999884  8999999863 21  11111111     11233443 4789999988643

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.55  E-value=0.023  Score=45.33  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      +....+|.|-|+|++|+.+|+.|.+.|.+|++++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            4567899999999999999999999999887643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.53  E-value=0.01  Score=41.77  Aligned_cols=34  Identities=12%  Similarity=-0.004  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|.+|.-+|..|++.|.+|+++.+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            4789999999999999999999999999998875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.50  E-value=0.006  Score=49.28  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -|.|||+|..|.+.|..|+++|++|+++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58999999999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.48  E-value=0.0076  Score=50.30  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+||.|.| .|.+|+.++..|.+.|++|++++|+..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            358999999 799999999999999999999999763

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.43  E-value=0.0061  Score=43.38  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..++.|||.|.+|.=+|..|.+.|.+|++..|++.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            46899999999999999999999999999988753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.35  E-value=0.0076  Score=46.19  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~   44 (275)
                      |||.|||.|..|..+|..|++.+  .+|++++|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999999999864  5899998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.32  E-value=0.0095  Score=44.26  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~   44 (275)
                      .+||.|||.|..|..+|..|++.+.  +|+++++++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4799999999999999999999875  789998876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.31  E-value=0.013  Score=43.77  Aligned_cols=44  Identities=14%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCc
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ..+|.|+| .|.+|...+..++..|. .|++.+++++ .+.+++.|.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga   74 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA   74 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC
Confidence            45899999 59999999999988884 8999999985 466666665

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.027  Score=42.15  Aligned_cols=75  Identities=15%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHH---h--ccCCCEEEEecCchhHHH
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAF---L--EADNDVILISTSILSLSE   82 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~---~--~~~aD~iilavp~~~~~~   82 (275)
                      ...+|.|.|+ |.+|....+.++..|.+|++.+++++ .+.+++.|+...-+..+.   .  -..+|+||=|+.. .+..
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~-~~~~  105 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK-EVEE  105 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT-THHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch-hHHH
Confidence            4468999995 99999999999999999999988874 567777777322111110   0  1356777777663 3344


Q ss_pred             Hhh
Q 023897           83 VLN   85 (275)
Q Consensus        83 v~~   85 (275)
                      .++
T Consensus       106 ~~~  108 (171)
T d1iz0a2         106 SLG  108 (171)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.023  Score=42.57  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+|+ |.+|....+.++..|.+|++.+++++ .+.+++.|.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga   74 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA   74 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence            4568999995 99999999999999999999888874 567777776

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.27  E-value=0.0069  Score=50.01  Aligned_cols=35  Identities=11%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ...|.|||+|.-|.++|..|++.|++|+++++++.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            45799999999999999999999999999998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.13  E-value=0.016  Score=48.28  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=35.1

Q ss_pred             CCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            6 PSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         6 ~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +..+..++|.|.| +|.+|+.+++.|.++|++|.+..|+..
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~   46 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            3456678999999 799999999999999999999988863

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.02  Score=49.61  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ..||.|||+|.+|..+++.|...|+ ++.++|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999997 899998763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.09  E-value=0.0058  Score=47.90  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC-------CeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG-------HILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g-------~~V~~~dr~~~   45 (275)
                      ..||+|||+|.-|.+.|..|+++|       ++|++|++.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            359999999999999999999988       47999998864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.04  E-value=0.012  Score=46.92  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             CeEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGII-G-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |||.|| | .+.||.++|+.|++.|++|++.||++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            566555 7 68899999999999999999999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.97  E-value=0.014  Score=41.57  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..++.|||.|.+|.=+|..|++.|.+|+++.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            46899999999999999999999999999988653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.011  Score=47.16  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ..||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3689999999999999999999997 899999775

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.014  Score=48.01  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      ++||.|.| .|.+|+.++..|.+.|++|+++|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            46899999 6999999999999999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.86  E-value=0.013  Score=49.79  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=28.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEc
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      .|||.|.| +|.+|+.+++.|.+.||+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            48999999 79999999999999999999997

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.84  E-value=0.015  Score=45.95  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..|.|||+|..|.+.|..|+++|++|.++++++.
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3599999999999999999999999999998864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.012  Score=48.41  Aligned_cols=31  Identities=23%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |.|||+|.-|.+-|..|+++|++|+++++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.58  E-value=0.013  Score=48.46  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=28.9

Q ss_pred             eEEEEcCChHHHHHHHHHH-----HCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMI-----KQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~-----~~g~~V~~~dr~~   44 (275)
                      -|.|||+|..|.++|..|+     ++|++|+++++++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            5999999999999999996     5799999999874

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.52  E-value=0.013  Score=45.18  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCCh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~   44 (275)
                      .+||.|.| .|.+|+.+++.|.+.|+  .|....|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            47999999 59999999999999997  566666665

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.49  E-value=0.037  Score=44.38  Aligned_cols=37  Identities=14%  Similarity=0.139  Sum_probs=33.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4567888999 689999999999999999999999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.013  Score=42.99  Aligned_cols=42  Identities=21%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             CcCCCC--CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897            2 AVSSPS--SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus         2 ~~~~~~--~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      -.|-|.  ..+.++|.|||.|.+|..-++.|.+.|.+|+++++.
T Consensus         2 ~~~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           2 VKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCCEEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             cccchhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            344453  357789999999999999999999999999999654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.046  Score=43.35  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            34667788888 689999999999999999999999974

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.41  E-value=0.0093  Score=49.82  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=27.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      .+|||.|.| +|.+|+.|+..|.+.|++|.++.
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            478999999 79999999999999998655443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.36  E-value=0.06  Score=41.16  Aligned_cols=47  Identities=15%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceE
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISF   56 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~   56 (275)
                      ...+|.|+|+|.+|...+..++..|. +|++.|++++ .+.+++.|...
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~   73 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI   73 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE
Confidence            45689999999999888888877776 7889999985 57788888743

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.35  E-value=0.023  Score=46.49  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++|.|.| +|.+|+.++..|.++||+|++.+|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4789999 79999999999999999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.024  Score=46.96  Aligned_cols=65  Identities=17%  Similarity=0.270  Sum_probs=42.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChh-hhH-HHHcCceE-----e--cChHHHhccCCCEEEEecC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDH-SQL-CHRSGISF-----F--SDKRAFLEADNDVILISTS   76 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~-a~~~g~~~-----~--~~~~~~~~~~aD~iilavp   76 (275)
                      |||.|.| +|.+|+.+++.|.+.|+ +|++.|+... ... ....+++.     .  .+..+....++|+||-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            7999999 69999999999999985 8999987653 221 11122221     1  1122212467999988654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.23  E-value=0.015  Score=46.23  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..|.|||+|.-|...|..|+++|++|.++++++.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4699999999999999999999999999999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.05  Score=40.79  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ..+|.|.| .|.+|...++.++..|.+|++.+++++ .+.+++.|+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga   71 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   71 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence            46899988 599999999999999999998888774 455666665

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.025  Score=46.99  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      +||.|.| +|.+|+.|++.|.+.|++|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            5899999 799999999999999999999875

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.18  E-value=0.035  Score=44.35  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             CeEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGII-G-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +||++| | .+.||.++|+.|++.|++|++.+|+++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            477665 7 578999999999999999999999974

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.13  E-value=0.028  Score=46.55  Aligned_cols=33  Identities=21%  Similarity=0.162  Sum_probs=29.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      +++|.|.| +|.+|+.++..|.+.|++|++.|+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            45788999 7999999999999999999999863

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.025  Score=46.79  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             CeE-EEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKI-GIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I-~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +|| .|.| +|.+|+.++..|.++||+|++.||..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            489 5778 79999999999999999999999864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.021  Score=46.67  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++||.|.| +|.+|+++++.|.+.|+.|++.++..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            56899999 79999999999999999988876554

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.93  E-value=0.033  Score=45.79  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +++.|.| +|.+|+.++..|.+.||+|+++||..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 69999999999999999999999853

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.034  Score=44.50  Aligned_cols=45  Identities=18%  Similarity=0.045  Sum_probs=33.7

Q ss_pred             CCcCCCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            1 MAVSSPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         1 ~~~~~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ||..-.+..+.+.+.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         1 m~~~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            443332333455555567 689999999999999999999999974

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.65  E-value=0.033  Score=40.93  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=27.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .||.|||.|..|.-+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999975 67999998754

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.16  Score=37.33  Aligned_cols=66  Identities=18%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CCCeEEEEc-C-ChHHHHHHHHHHHCCCeEEEEcCCh-h----h-h----HHHHcC--ceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIG-F-GPFGQFLAKTMIKQGHILRATSRTD-H----S-Q----LCHRSG--ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG-~-G~mG~sla~~L~~~g~~V~~~dr~~-~----~-~----~a~~~g--~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ++.||++|| + .++-.|+...+...|.+++++.+.. .    . .    .+.+.+  +..+++++++ ++++|+|..-+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a-i~~aDviyt~~   80 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEA-LAGADVVYTDV   80 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHH-HTTCSEEEECC
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHh-hhhhhheeccc
Confidence            467999999 4 6899999999999999999987653 1    1 1    122223  4678899987 48999988654


Q ss_pred             C
Q 023897           76 S   76 (275)
Q Consensus        76 p   76 (275)
                      -
T Consensus        81 ~   81 (161)
T d1vlva2          81 W   81 (161)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.073  Score=41.99  Aligned_cols=36  Identities=19%  Similarity=0.157  Sum_probs=30.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.+.|.| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            444455667 688999999999999999999999874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.49  E-value=0.054  Score=43.23  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             eEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           13 KIGII-G-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ||++| | .+-||.++|+.|++.|++|++++|+++
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            67666 6 688999999999999999999999974

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.081  Score=41.80  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3567778888 588999999999999999999999974

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.35  E-value=0.085  Score=41.69  Aligned_cols=36  Identities=19%  Similarity=0.164  Sum_probs=30.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            445666778 578999999999999999999999974

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.33  E-value=0.042  Score=44.93  Aligned_cols=30  Identities=33%  Similarity=0.328  Sum_probs=28.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcC
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      ||.|.| +|.+|+.+++.|.++|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            799998 799999999999999999999874

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.32  E-value=0.037  Score=41.45  Aligned_cols=30  Identities=27%  Similarity=0.542  Sum_probs=27.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      |||||=|+|++|+.+.+.|...+++|...+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            699999999999999999998899887764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.30  E-value=0.061  Score=42.26  Aligned_cols=36  Identities=11%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456788888 588999999999999999999999874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.30  E-value=0.085  Score=42.74  Aligned_cols=34  Identities=18%  Similarity=0.037  Sum_probs=29.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +++.|-| .|.||.++|+.|++.|++|++.+|+..
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4455556 799999999999999999999999974

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.24  E-value=0.16  Score=37.13  Aligned_cols=65  Identities=20%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHCCCeEEEEcCChh------hhHHHHcC--ceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGF---GPFGQFLAKTMIKQGHILRATSRTDH------SQLCHRSG--ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~---G~mG~sla~~L~~~g~~V~~~dr~~~------~~~a~~~g--~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...||+|||=   +++..|++..+...|.+++++.+..-      ...+.+.+  +..+.+++++ ++++|+|..-.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a-v~~aDvvy~~~   78 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDV-IGKLDVLYVTR   78 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHH-HTTCSEEEECC
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHh-hccCcEEEeec
Confidence            4579999994   89999999999999999998876541      12233333  3567899887 58999866544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.23  E-value=0.04  Score=43.35  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .||.|.| .|.||.++|+.|++.|++|++.||++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4798999 699999999999999999999999863

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.16  E-value=0.09  Score=41.78  Aligned_cols=37  Identities=16%  Similarity=0.078  Sum_probs=31.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.+.|-| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3455677778 588999999999999999999999974

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.03  E-value=0.038  Score=41.11  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=26.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEE
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRAT   40 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~   40 (275)
                      ..+|.|||.|..|.-+|..|++.|.++.+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            468999999999999999999999876554

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.02  E-value=0.063  Score=43.42  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=35.4

Q ss_pred             CCCCCCCCeEEEEcCC---hHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            5 SPSSSSTLKIGIIGFG---PFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         5 ~~~~~~~~~I~IIG~G---~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +|...+.+++.|-|++   -||.++|+.|++.|.+|++.+|++.
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            4667788889999975   5999999999999999999998764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.98  E-value=0.19  Score=36.64  Aligned_cols=64  Identities=9%  Similarity=0.069  Sum_probs=45.8

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHCCCeEEEEcCChh----hhHHHHc--CceEecChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGF---GPFGQFLAKTMIKQGHILRATSRTDH----SQLCHRS--GISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~---G~mG~sla~~L~~~g~~V~~~dr~~~----~~~a~~~--g~~~~~~~~~~~~~~aD~iila   74 (275)
                      ...||+|||=   |++..|++..+.+.|.++..+...+.    .......  .+..+++++++ ++++|+|..-
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~ea-i~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEV-INEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGT-GGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHH-hhcCCeEEEe
Confidence            4679999993   66999999999999998766554432    1122223  44677899886 5899987653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.98  E-value=0.083  Score=42.21  Aligned_cols=37  Identities=11%  Similarity=0.239  Sum_probs=31.7

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.| .+.||.++|+.|++.|++|++++|+++
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4556666777 688999999999999999999999974

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=92.93  E-value=0.11  Score=41.55  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA   39 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~   39 (275)
                      .+.+..+|.|-|.|++|+.+|+.|.+.|.+|+.
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            356778999999999999999999999998774

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.92  E-value=0.079  Score=42.33  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcC-C--hHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGF-G--PFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~-G--~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.|+ |  -||.++|+.|++.|++|++.+|+++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45678888885 5  4999999999999999999999874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.92  E-value=0.1  Score=41.62  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=31.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.+.|-| .+-||.++|+.|++.|++|++.+|+++
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3455666778 578999999999999999999999974

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.064  Score=42.50  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=29.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+++.|.| .+.+|.++|+.|++.|++|++.+|+++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            34444556 799999999999999999999999974

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.78  E-value=0.067  Score=42.05  Aligned_cols=35  Identities=9%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++|.|.| .|.+|.++|+.|++.|++|.+.|+++.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999 589999999999999999999988753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.76  E-value=0.084  Score=42.55  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455677778 689999999999999999999999974

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.75  E-value=0.24  Score=39.25  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|-| .+-||.++|+.|++.|++|++.+|+++
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            44555668 588999999999999999999999985

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.69  E-value=0.27  Score=36.15  Aligned_cols=65  Identities=17%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh-----hh-hHHHH----c--CceEecChHHHhccCCCEEEEe
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD-----HS-QLCHR----S--GISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~-----~~-~~a~~----~--g~~~~~~~~~~~~~~aD~iila   74 (275)
                      .+..||++|| ..++..|++..+...|.+|+++.+..     .. ..+.+    .  .+..+.+++++ +.++|+|..-
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea-~~~adviy~~   79 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKA-VKDADVIYTD   79 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH-TTTCSEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHH-hhhccEEeec
Confidence            4678999999 67899999999999999999987642     11 22221    1  23677888886 5899987753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.65  E-value=0.13  Score=40.75  Aligned_cols=36  Identities=11%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.+.|-| .+.||.++|+.|++.|++|.+.+|+++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455677778 699999999999999999999999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.11  Score=38.71  Aligned_cols=45  Identities=18%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|+| .|.+|....+..+..|.+|++.+++++ .+.+++.|.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa   74 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA   74 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence            346899996 577999988888888999999999985 455555554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.56  E-value=0.047  Score=45.74  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=27.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeE-EEEcCC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHIL-RATSRT   43 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V-~~~dr~   43 (275)
                      |||.|.| +|.+|+.++..|.+.|++| .+.|+.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            7999999 7999999999999999974 456643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.55  E-value=0.081  Score=43.36  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             CCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            6 PSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         6 ~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+..+.+.+.|-| .+.||.++|+.|++.|++|++.|++.
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            5555555566668 58899999999999999999998875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.11  Score=41.32  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|.| .+.+|.++|+.|++.|++|++++|+++
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34566667 699999999999999999999999974

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.082  Score=34.01  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcC
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSG   53 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g   53 (275)
                      ....+|.|.| .|.+|....+.++..|++|++..++++ .+..++.|
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            4557899998 599999999988999999999988874 45555554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.42  E-value=0.08  Score=36.66  Aligned_cols=34  Identities=18%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH---CCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK---QGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~---~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|.+|.-+|..|.+   .|.+|+++.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4689999999999999977655   478999998765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.41  E-value=0.14  Score=40.74  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=32.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3566778888 578999999999999999999999974

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.087  Score=41.66  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcC-C--hHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGF-G--PFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~-G--~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.|+ |  -+|.++|+.|.+.|++|++.+|+++
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            35567777785 4  4889999999999999999999865

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.37  E-value=0.12  Score=40.67  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|.| .+.+|.++|+.|.+.|++|++.+|+.+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455677778 577999999999999999999999985

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.34  E-value=0.13  Score=40.73  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcC-C--hHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            8 SSSTLKIGIIGF-G--PFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         8 ~~~~~~I~IIG~-G--~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.+++.|.|+ |  -+|.++|+.|++.|++|++.+|+++
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            456677888886 4  5999999999999999999999875

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.30  E-value=0.08  Score=44.42  Aligned_cols=32  Identities=13%  Similarity=0.407  Sum_probs=28.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHH-CCCeEEEEcC
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIK-QGHILRATSR   42 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~-~g~~V~~~dr   42 (275)
                      .|||.|.| +|-+|+.++..|.+ .|++|+++|+
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            47999999 79999999998865 7999999874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.062  Score=41.19  Aligned_cols=32  Identities=16%  Similarity=0.017  Sum_probs=29.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -|.|||+|.-|.+.|..+++.|.+|.++++++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            48999999999999999999999999998863

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.29  E-value=0.12  Score=41.13  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|.| .+.||.++|+.|++.|++|++.||+++
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45566668 588999999999999999999999974

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.23  E-value=0.19  Score=37.46  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE--e---cChHHHh-----ccCCCEEEEecCc
Q 023897           10 STLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF--F---SDKRAFL-----EADNDVILISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~--~---~~~~~~~-----~~~aD~iilavp~   77 (275)
                      ...+|.|.|+ |.+|...++..+..|.+|++.+++++ .+.+++.|...  .   .+..+.+     -...|+||=|+..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~  108 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  108 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCc
Confidence            4568899896 88999988888889999999998875 56666666521  1   1111111     1346777777765


Q ss_pred             hhHHHHhhcC
Q 023897           78 LSLSEVLNSL   87 (275)
Q Consensus        78 ~~~~~v~~~l   87 (275)
                      +...+.++.+
T Consensus       109 ~~~~~~~~~l  118 (182)
T d1v3va2         109 EFLNTVLSQM  118 (182)
T ss_dssp             HHHHHHGGGE
T ss_pred             hhhhhhhhhc
Confidence            5544444443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.22  E-value=0.11  Score=41.12  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CeEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGII-G-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .||++| | .+.||.++|+.|++.|++|++++|+++
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            455555 7 589999999999999999999999974

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.081  Score=44.08  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++.|.| +|.+|+.++..|.+.|++|++.||..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            344778 79999999999999999999999854

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.072  Score=42.71  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|.| .+-||.++|+.|++.|++|++.+|+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3556777778 578999999999999999999999985

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.12  E-value=0.075  Score=44.99  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             eEEEEcCChHHHHHHHHHHH------CCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIK------QGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~------~g~~V~~~dr~~   44 (275)
                      -|.|||+|.-|.+.|..|++      +|++|.++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999987      899999999874

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.10  E-value=0.1  Score=37.89  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             CeEEEE--cCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGII--GFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~II--G~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .++.|+  |.|.+|..+|..|++.|++|+++.+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            455565  8999999999999999999999988753

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.15  Score=41.43  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.+.|.| .+.||.++|+.|++.|++|++.+|+.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566677778 688999999999999999999999974

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.07  E-value=0.061  Score=43.23  Aligned_cols=37  Identities=14%  Similarity=0.044  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      +.+.+++.|-| .+.||.++|+.|++.|++|++.+++.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            45556666777 79999999999999999999988775

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.04  E-value=0.087  Score=36.55  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=27.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHH---CCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIK---QGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~---~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|.+|.-+|..|.+   +|.+|+++.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4689999999999999976655   456899988764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.01  E-value=0.069  Score=40.33  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|.-|.+-|..+++.|.++.++++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            3589999999999999999999999999998654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.16  Score=40.08  Aligned_cols=36  Identities=19%  Similarity=0.071  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+.+.|-| .+.||..+|+.|+++|.+|++++|+++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            445566668 577999999999999999999999985

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.18  Score=39.96  Aligned_cols=36  Identities=8%  Similarity=0.178  Sum_probs=31.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.+.|-| .+.||.++|+.|++.|++|++.||+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456677778 589999999999999999999999975

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.98  E-value=0.097  Score=41.21  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=31.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+++.|-| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            3455677778 578999999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.96  E-value=0.082  Score=42.02  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcC-Ch--HHHHHHHHHHHCCCeEEEEcCChh
Q 023897            9 SSTLKIGIIGF-GP--FGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus         9 ~~~~~I~IIG~-G~--mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++.+++.|.|+ |.  ||.++|+.|++.|++|++.+|+..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            45678888895 64  999999999999999999998874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.93  E-value=0.1  Score=41.96  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|.| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            344556667 689999999999999999999999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.90  E-value=0.074  Score=43.09  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      --|.|||.|.-|.+.|..|++.|.+|+++++.+
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            369999999999999999999999999999876

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.88  E-value=0.15  Score=40.27  Aligned_cols=35  Identities=14%  Similarity=0.100  Sum_probs=29.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            44555668 588999999999999999999999985

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.25  Score=34.24  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHH-Hhh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSE-VLN   85 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~-v~~   85 (275)
                      +..||.|-| +|.-|+.-++.+.+.|-+|. +..+.+.-+  ...|+.++++.+|++. .++|.-++-||+....+ +++
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~--~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~E   82 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE   82 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTE--EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCc--ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHH
Confidence            346899999 59999999999999998876 354443211  1257888999888642 37899999999986654 445


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      .+
T Consensus        83 Ai   84 (119)
T d2nu7a1          83 AI   84 (119)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.80  E-value=0.16  Score=40.61  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.+.|.| .+-||.++|+.|++.|++|++.+|+++
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            445556667 688999999999999999999999974

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.71  E-value=0.075  Score=42.64  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=29.8

Q ss_pred             eEEEEcCChHHHHHHHHHHH-CCCeEEEEcCChh
Q 023897           13 KIGIIGFGPFGQFLAKTMIK-QGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~dr~~~   45 (275)
                      .|.|||+|.-|.+.|..|++ .|++|.++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998764

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.71  E-value=0.025  Score=46.58  Aligned_cols=26  Identities=12%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeE
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHIL   37 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V   37 (275)
                      |||.|.| +|.+|+.++..|.+.|++|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            7999999 7999999999999998743

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.076  Score=39.91  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|..|.+-|..+++.|.+|+++++.+
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            3579999999999999999999999999998754

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.54  E-value=0.6  Score=32.36  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEE-EcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHH-HHhh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRA-TSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLS-EVLN   85 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~-~v~~   85 (275)
                      +..||.|-| +|..|+.-++...+.|-+|.+ ..+.+.-+  .-.|+.++++.+|++. .++|.-++-||+.... .+++
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~--~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~E   83 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALE   83 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCc--EEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHH
Confidence            345899999 699999999999999988764 44433211  1147888899888642 3789999999998655 4445


Q ss_pred             cC
Q 023897           86 SL   87 (275)
Q Consensus        86 ~l   87 (275)
                      .+
T Consensus        84 Ai   85 (121)
T d1oi7a1          84 AA   85 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.51  E-value=0.11  Score=41.41  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|.| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455566667 578999999999999999999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.48  E-value=0.14  Score=40.70  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=30.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+++.|.| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            44566667 699999999999999999999999974

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.43  E-value=0.35  Score=36.30  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             CCCeEEEEc-C-ChHHHHHHHHHHHCCCeEEEEcCCh-----h-hhHH----HHcC--ceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIG-F-GPFGQFLAKTMIKQGHILRATSRTD-----H-SQLC----HRSG--ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG-~-G~mG~sla~~L~~~g~~V~~~dr~~-----~-~~~a----~~~g--~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...||++|| . -++..|++..+...|.+++++.+..     . .+.+    .+.|  +..+.+++++ ++++|+|..-+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea-i~~aDvVyt~~   82 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEA-VKGVDFVHTDV   82 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHH-TTTCSEEEECC
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhc-cccccEEEeeh
Confidence            457999999 4 5899999999999999999998743     1 1222    2233  4678899887 58999877543

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.40  E-value=0.15  Score=37.20  Aligned_cols=62  Identities=11%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGF---GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~---G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iila   74 (275)
                      +..||++||=   +++..|++..+...|.++.+..+..-..  .+..+..+.+++++ ++++|+|..-
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~~~~~~~~~~~~ea-~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--EENTFGTYVSMDEA-VESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--cccceeEEEechhc-cccCceeeee
Confidence            3579999993   6899999999999999998887764211  12244566788886 5899987653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.15  Score=40.21  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            34444557 689999999999999999999999975

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.31  E-value=0.22  Score=37.91  Aligned_cols=49  Identities=18%  Similarity=0.300  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecC
Q 023897            8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTS   76 (275)
Q Consensus         8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp   76 (275)
                      ++..||||||-+ |++ .+..++|.+.|+++...+                 ++++ + .++|.+|++=.
T Consensus         3 ~~~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~-----------------~~~~-l-~~~D~lIlPGG   52 (202)
T d1q7ra_           3 FQSNMKIGVLGLQGAV-REHVRAIEACGAEAVIVK-----------------KSEQ-L-EGLDGLVLPGG   52 (202)
T ss_dssp             CCCCCEEEEESCGGGC-HHHHHHHHHTTCEEEEEC-----------------SGGG-G-TTCSEEEECCC
T ss_pred             cccCCEEEEEECCCCH-HHHHHHHHHCCCcEEEEC-----------------CHHH-H-hcCCEEEECCC
Confidence            456799999998 988 667899999999877663                 2233 2 68899998643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.27  E-value=0.26  Score=36.83  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCc
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGI   54 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~   54 (275)
                      ...+|.|.| .|.+|+...+..+..|.+|+...++++ .+.+.+.|.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa   77 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA   77 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc
Confidence            346799999 699999999988899999999988874 566666554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.26  E-value=0.061  Score=42.93  Aligned_cols=31  Identities=19%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcC
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      |||.|.| .|.+|+.+.+.|.+.|+.|.+.-+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECC
Confidence            7999999 699999999999999875544333

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.11  Score=39.99  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .-|.|||.|.-|.+.|..+++.|.+|.++++.+
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            359999999999999999999999999999764

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.07  E-value=0.1  Score=40.55  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=28.3

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ++.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            344557 699999999999999999999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.03  E-value=0.14  Score=41.09  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+++.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            44556667 688999999999999999999999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.78  E-value=0.12  Score=39.95  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .-|.|||.|.-|.+.|..+++.|++|.++++.+
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            358999999999999999999999999998765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.77  E-value=0.047  Score=40.85  Aligned_cols=28  Identities=11%  Similarity=0.058  Sum_probs=24.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRA   39 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~   39 (275)
                      .+|.|||.|..|..+|..|++.|+++.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEE
Confidence            4699999999999999999999875443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.14  Score=36.53  Aligned_cols=34  Identities=26%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHH----HCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMI----KQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~----~~g~~V~~~dr~~   44 (275)
                      ..+|.|||.|.+|.-+|..|.    +.|.+|+++++++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            358999999999999988885    4588999987764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.17  Score=35.69  Aligned_cols=79  Identities=15%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             CCCCCCCeEEEEcCCh-----------HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEE-
Q 023897            6 PSSSSTLKIGIIGFGP-----------FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILI-   73 (275)
Q Consensus         6 ~~~~~~~~I~IIG~G~-----------mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iil-   73 (275)
                      |.....+||.|||.|.           .+...+++|++.|+++++.+.||+.         +.++.+     -+|-+.+ 
T Consensus         2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T---------Vstd~d-----~aD~lYfe   67 (127)
T d1a9xa3           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT---------IMTDPE-----MADATYIE   67 (127)
T ss_dssp             CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC---------GGGCGG-----GSSEEECS
T ss_pred             CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh---------hhcChh-----hcceeeee
Confidence            3445668999999986           3778889999999999999999852         123332     2444443 


Q ss_pred             ecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           74 STSILSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        74 avp~~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      .+-...+.++++.-     +++.++...++
T Consensus        68 Plt~e~v~~Ii~~E-----~pd~il~~~GG   92 (127)
T d1a9xa3          68 PIHWEVVRKIIEKE-----RPDAVLPTMGG   92 (127)
T ss_dssp             CCCHHHHHHHHHHH-----CCSEEECSSSH
T ss_pred             cCCHHHHHHHHHHh-----CcCCeEEEeee
Confidence            56666667776653     34566665554

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.67  E-value=0.15  Score=42.10  Aligned_cols=31  Identities=16%  Similarity=0.191  Sum_probs=27.8

Q ss_pred             eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897           13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRT   43 (275)
Q Consensus        13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~   43 (275)
                      .|.|.| .|-+|+.++..|.++|++|+++|+.
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            478888 7999999999999999999999763

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.65  E-value=0.17  Score=40.10  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+++.|.| .+-||.++|+.|++.|++|++.+|+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            334455557 688999999999999999999999974

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.63  E-value=0.4  Score=37.66  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHH-CCCeEEE-EcCC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIK-QGHILRA-TSRT   43 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~-~g~~V~~-~dr~   43 (275)
                      ...++|.|-|.|++|..+|+.|.+ .|..|+. .|.+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            567899999999999999999975 5887665 4543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.61  E-value=0.11  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .-|.|||.|.-|.+.|..|+++|++|+++++.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            359999999999999999999999999999875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.13  Score=38.04  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .|.|||.|..|.+.|..+++.|.+|.+++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            58999999999999999999999999998753

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.57  E-value=0.69  Score=36.06  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=28.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEc
Q 023897            7 SSSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATS   41 (275)
Q Consensus         7 ~~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~d   41 (275)
                      .+.+.++|.|-|+|++|+.+|+.|. +.|..|+..+
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEee
Confidence            3567789999999999999999996 4688777543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.53  E-value=0.18  Score=39.77  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=29.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|.| .+.||.++|+.|++.|++|++.+|++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            34455567 588999999999999999999999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.24  Score=39.09  Aligned_cols=34  Identities=12%  Similarity=0.127  Sum_probs=29.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +.+.|-| .+.||.++|+.|++.|++|++.+|+.+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4455557 588999999999999999999999975

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.45  E-value=0.14  Score=39.06  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..-|.|||.|.-|.+.|..+++.|.+|.++++++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            3468999999999999999999999999998764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.18  Score=40.32  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             CCeEEEE--cCChHHHHHHHHHHHC-CCeEEEEcCChh
Q 023897           11 TLKIGII--GFGPFGQFLAKTMIKQ-GHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~II--G~G~mG~sla~~L~~~-g~~V~~~dr~~~   45 (275)
                      .++|++|  |.+-||.++|+.|++. |.+|++++|+++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            5789988  5799999999999875 899999999985

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.3  Score=34.02  Aligned_cols=75  Identities=13%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCh-----------HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEE-EEecCc
Q 023897           10 STLKIGIIGFGP-----------FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVI-LISTSI   77 (275)
Q Consensus        10 ~~~~I~IIG~G~-----------mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~i-ilavp~   77 (275)
                      ..+||.|||.|.           .+...+++|++.|+++++.+.||+.         +.++.+     -+|-+ |-.+-.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT---------Vstd~d-----~aD~lYfeplt~   68 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET---------VSTDYD-----TSDRLYFEPVTL   68 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS---------STTSTT-----SSSEEECCCCSH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh---------hhcChh-----hcCceEEccCCH
Confidence            457999999985           4778899999999999999999852         123322     24544 335666


Q ss_pred             hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897           78 LSLSEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        78 ~~~~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      ..+.++++.=     +++.+++..++
T Consensus        69 e~v~~Ii~~E-----~p~~ii~~~GG   89 (121)
T d1a9xa4          69 EDVLEIVRIE-----KPKGVIVQYGG   89 (121)
T ss_dssp             HHHHHHHHHH-----CCSEEECSSST
T ss_pred             HHHHHHHHHh-----CCCEEEeehhh
Confidence            6666666553     34567776664

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.38  E-value=0.19  Score=40.77  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEc
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      ....++|.|-|.|++|...|+.|.+.|..|++++
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4567899999999999999999999999887653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.34  E-value=0.18  Score=39.89  Aligned_cols=35  Identities=20%  Similarity=0.188  Sum_probs=29.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .+.+.|-| .+.||.++|+.|++.|++|++.+|+++
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34444557 689999999999999999999999975

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.32  E-value=0.14  Score=42.28  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=28.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      -|.|||.|.-|..+|..|+++|++|.+..+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            489999999999999999999999999875

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.087  Score=39.21  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCC
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQG   34 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g   34 (275)
                      .++.+|+++|+|.+|+++++.|.++.
T Consensus         2 ~k~i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           2 TKVVNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEEeCCHHHHHHHHHHHHhH
Confidence            35568999999999999999998753

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.16  E-value=0.12  Score=39.67  Aligned_cols=33  Identities=24%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||.|..|...|..+++.|.+|.++++++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            359999999999999999999999999998763

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.10  E-value=0.22  Score=39.59  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             eEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           13 KIGII-G-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        13 ~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      |+++| | .+.||.++|+.|++.|++|++.+|+++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56555 6 799999999999999999999999974

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.09  E-value=0.14  Score=39.55  Aligned_cols=32  Identities=25%  Similarity=0.116  Sum_probs=29.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -|.|||+|.-|.+.|..+++.|.+|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.96  E-value=0.13  Score=41.02  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=29.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+.+.+.|.| .+.||.++|+.|++.|++|++.+|+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3455555557 68999999999999999999999985

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.87  E-value=0.17  Score=40.22  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             eEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGII-G-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |+++| | .+.||.++|+.|++.|++|++.+|++
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45544 6 68899999999999999999999975

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.17  Score=38.52  Aligned_cols=32  Identities=19%  Similarity=0.119  Sum_probs=29.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -+.|||.|..|.+.|..+++.|.+|.+.++..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            48899999999999999999999999998754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.33  E-value=0.27  Score=38.79  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=30.0

Q ss_pred             CCeEEEE-c-CChHHHHHHHHHHH---CCCeEEEEcCChh
Q 023897           11 TLKIGII-G-FGPFGQFLAKTMIK---QGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~II-G-~G~mG~sla~~L~~---~g~~V~~~dr~~~   45 (275)
                      .-||+|| | .+.||.++|+.|++   .|++|++.+|+++
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~   44 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES   44 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH
Confidence            3588888 6 57899999999986   6899999999985

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.09  E-value=0.2  Score=38.06  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..|.|||.|..|.+.|..+++.|.+|.++++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            358999999999999999999999999998764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.00  E-value=0.51  Score=34.75  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=36.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      ...|.|-| +|.+|....+..+..|.+|++..++++ .+.+.+.|..
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad   70 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS   70 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence            44699999 699999999888889999999988874 5666666653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.64  Score=34.50  Aligned_cols=44  Identities=23%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce
Q 023897           12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS   55 (275)
Q Consensus        12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~   55 (275)
                      .+|.|.| .|.+|....+..+..|.+|++..++++ .+.+++.|..
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad   78 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS   78 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc
Confidence            4688887 699999999999999999999998875 4556666664

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.82  E-value=0.19  Score=41.62  Aligned_cols=30  Identities=17%  Similarity=-0.014  Sum_probs=28.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      -|-|||.|.-|..+|..|+++|++|.+.++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            378999999999999999999999999876

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.66  E-value=0.32  Score=38.39  Aligned_cols=36  Identities=8%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .+.+.|.|.| .+-||.++|+.|++.|.+|++.+|+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4566788888 57899999999999999888776655

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.60  E-value=0.19  Score=37.48  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC---CeEEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG---HILRAT   40 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g---~~V~~~   40 (275)
                      |||||=|+|+||+.+.+.+.+..   .+|+..
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI   32 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVI   32 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence            69999999999999999887643   455554

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.44  E-value=0.69  Score=32.44  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCCeEEE-EcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHH-Hhh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRA-TSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSE-VLN   85 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~-v~~   85 (275)
                      +..||.+-| +|.-|+.-++...+.|-+|.+ +.+.+.-+  .-.|+.++++.+|+.. .++|.-++-||+....+ +++
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~--~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~E   91 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINE   91 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCc--cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHHH
Confidence            446899999 599999999999999988764 44433211  1247888899888641 27899999999987654 445


Q ss_pred             cC-CCCCCCCCcEEEeCCCCC
Q 023897           86 SL-PVHCLQRRTLIADVLSVK  105 (275)
Q Consensus        86 ~l-~~~~l~~~~iv~d~~s~k  105 (275)
                      .+ ..  +  ..+++-+-.+.
T Consensus        92 Ai~ag--I--~liV~ITEgIP  108 (130)
T d1euca1          92 AIDAE--V--PLVVCITEGIP  108 (130)
T ss_dssp             HHHTT--C--SEEEECCCCCC
T ss_pred             HHhCC--C--CEEEEecCCCC
Confidence            54 32  3  23555444444

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.23  E-value=0.27  Score=39.09  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             CeEEEE-c-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGII-G-FGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |.|+|| | .+.||.++|+.|++.|++|++.+++.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            568888 5 68899999999999999999866554

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.02  E-value=0.26  Score=37.35  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ++.-|.|||.|.-|.+-|..+++.|.+|.++++.+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            34569999999999999999999999999998753

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.23  Score=39.48  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=25.5

Q ss_pred             EEEEc-CChHHHHHHHHHHHCCC-eEEEEcC
Q 023897           14 IGIIG-FGPFGQFLAKTMIKQGH-ILRATSR   42 (275)
Q Consensus        14 I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr   42 (275)
                      |.|.| +|.+|+.++..|.++|+ +|+++|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            67888 79999999999999995 7999874

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.81  E-value=0.39  Score=32.69  Aligned_cols=68  Identities=7%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             CeEEEEcC----------ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897           12 LKIGIIGF----------GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS   81 (275)
Q Consensus        12 ~~I~IIG~----------G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~   81 (275)
                      .+|||+|+          ..-.--+...|.+.|.+|.+||+--... -...+.....+++++ ...+|+|++......+.
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~-~~~~~~~~~~~l~~~-~~~sDiII~~~~~~~~~   93 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL-ESEDQSVLVNDLENF-KKQANIIVTNRYDNELQ   93 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC-CTTCCSEECCCHHHH-HHHCSEEECSSCCGGGG
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh-HhccCCEEEeCHHHH-HhhCCEEEEcCCchHHH
Confidence            47999995          2345668889999999999999764321 112456677889886 47899877666554433

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.79  E-value=0.29  Score=38.42  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             EEEE-c-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           14 IGII-G-FGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        14 I~II-G-~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      +++| | .+.+|.++|+.|++.|++|++.+|+.+
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~   36 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE   36 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4444 6 678999999999999999999998863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.78  E-value=0.2  Score=40.75  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~   45 (275)
                      ..|.|||+|.-|.+.|..|+++  |++|.++++++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            4699999999999999999864  899999998764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=87.53  E-value=0.24  Score=36.83  Aligned_cols=29  Identities=34%  Similarity=0.674  Sum_probs=26.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEc
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATS   41 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d   41 (275)
                      ||||=|+|++|+.+.+.+.+.+.+|...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            89999999999999999998888877654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.38  E-value=0.64  Score=34.75  Aligned_cols=84  Identities=12%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH----HHHcCc---e-EecChHHH-hccCCCEEEEec-----
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL----CHRSGI---S-FFSDKRAF-LEADNDVILIST-----   75 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~----a~~~g~---~-~~~~~~~~-~~~~aD~iilav-----   75 (275)
                      ..+|.=||+| .|. .+..|++.|++|+++|.++. .+.    +.+.|+   . ...+..+. .-...|+|+...     
T Consensus        31 ~grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          31 PGRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL  108 (198)
T ss_dssp             SCEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred             CCcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence            3489999998 343 56688889999999999985 332    333443   1 11222221 113458877643     


Q ss_pred             CchhHHHHhhcC-CCCCCCCCcEE
Q 023897           76 SILSLSEVLNSL-PVHCLQRRTLI   98 (275)
Q Consensus        76 p~~~~~~v~~~l-~~~~l~~~~iv   98 (275)
                      |+.....+++++ ..  ++++..+
T Consensus       109 ~~~~~~~~l~~~~~~--L~pgG~~  130 (198)
T d2i6ga1         109 EAQTIPGLIANMQRC--TKPGGYN  130 (198)
T ss_dssp             CTTHHHHHHHHHHHT--EEEEEEE
T ss_pred             CHHHHHHHHHHHHHH--cCCCcEE
Confidence            334455677766 44  6665543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=1.1  Score=32.69  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh-----h-hh----HHHHcC--ceEecChHHHhccCCCEEEEec
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD-----H-SQ----LCHRSG--ISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~-----~-~~----~a~~~g--~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ..+.||+++| .-++-.|++..+...|.+++++.+..     . ..    .+.+.|  +..+.++.++ +.++|+|...+
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~-~~~advi~~~~   80 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEA-AHGGNVLITDT   80 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHH-HTTCSEEEECC
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHH-Hhhhhheeeec
Confidence            4678999999 55787888888888899999887642     1 11    122334  3677888886 58999988775


Q ss_pred             Cc
Q 023897           76 SI   77 (275)
Q Consensus        76 p~   77 (275)
                      -.
T Consensus        81 ~~   82 (170)
T d1otha2          81 WI   82 (170)
T ss_dssp             SS
T ss_pred             ee
Confidence            53

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=87.16  E-value=1.1  Score=33.22  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=47.7

Q ss_pred             CCCeEEEEc-C-ChHHHHHHHHHHHCCCeEEEEcCCh-----hh-h----HHHHcCc--eEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIG-F-GPFGQFLAKTMIKQGHILRATSRTD-----HS-Q----LCHRSGI--SFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG-~-G~mG~sla~~L~~~g~~V~~~dr~~-----~~-~----~a~~~g~--~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...||+++| . -++..|++.+++..|.+++++.+..     .. .    .....|.  ..+.+.+++ +.++|+|..-+
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a-~~~aDvvyt~~   82 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKG-VEGADFIYTDV   82 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHH-HTTCSEEEECC
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhc-cccCCEEEEEe
Confidence            357999999 4 4799999999999999999987653     11 1    2233343  567888886 58999887643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=87.15  E-value=0.86  Score=35.92  Aligned_cols=86  Identities=16%  Similarity=0.065  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH----HHcCce---EecChHHHh-ccCCCEEEEecCchhH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC----HRSGIS---FFSDKRAFL-EADNDVILISTSILSL   80 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a----~~~g~~---~~~~~~~~~-~~~aD~iilavp~~~~   80 (275)
                      ..++|.=+|+|. | .++..+++.|.+|+++|.++. .+.+    ...|+.   ...+..+.. ....|+|+.....+..
T Consensus       120 ~g~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~l  197 (254)
T d2nxca1         120 PGDKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELH  197 (254)
T ss_dssp             TTCEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHH
T ss_pred             ccCEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccccH
Confidence            456899999986 4 355667788999999999995 3333    334442   223433321 1467888876666666


Q ss_pred             HHHhhcC-CCCCCCCCcEEE
Q 023897           81 SEVLNSL-PVHCLQRRTLIA   99 (275)
Q Consensus        81 ~~v~~~l-~~~~l~~~~iv~   99 (275)
                      .+++..+ ..  +++|..++
T Consensus       198 ~~l~~~~~~~--LkpGG~li  215 (254)
T d2nxca1         198 AALAPRYREA--LVPGGRAL  215 (254)
T ss_dssp             HHHHHHHHHH--EEEEEEEE
T ss_pred             HHHHHHHHHh--cCCCcEEE
Confidence            6776666 54  66665443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.12  E-value=0.23  Score=37.06  Aligned_cols=30  Identities=20%  Similarity=0.468  Sum_probs=23.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC----CeEEEEc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG----HILRATS   41 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g----~~V~~~d   41 (275)
                      |||||=|+|++|+.+.+.+.+.+    .+|...+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            69999999999999999987643    3555544

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=87.04  E-value=0.28  Score=40.56  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=28.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcC
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      --+-|||.|.-|..+|..|+++|++|++..+
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3588999999999999999999999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.02  E-value=0.24  Score=40.25  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      .-|.|||.|.-|.+-|..+++.|.+|++.++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            359999999999999999999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=0.24  Score=38.39  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH   50 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~   50 (275)
                      ...||..+|+|.  +..+..|++.|++|+++|.++. ++.+.
T Consensus        45 ~~~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~   84 (229)
T d2bzga1          45 SGLRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFF   84 (229)
T ss_dssp             CSCEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHH
Confidence            456999999988  3567788999999999999995 44443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.09  E-value=0.37  Score=37.84  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -+.|||.|.-|...|..+++.|.+|.+++++.
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            37899999999999999999999999999763

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.06  E-value=0.51  Score=36.89  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHCCC--eEEEEcCChh
Q 023897           10 STLKIGIIG-FGPFGQFLAKTMIKQGH--ILRATSRTDH   45 (275)
Q Consensus        10 ~~~~I~IIG-~G~mG~sla~~L~~~g~--~V~~~dr~~~   45 (275)
                      .+++|.|-| .+-||.++|+.|++.|+  .|++.+|+.+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~   40 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            446777778 69999999999999985  6888889875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.33  Score=37.09  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCCh
Q 023897            9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~   44 (275)
                      +...++.|||.|..|..+|..|++.|+  +|+++++.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            344578999999999999999998876  588877643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.64  E-value=0.33  Score=38.01  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHH---HCCCeEEEEcCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMI---KQGHILRATSRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~---~~g~~V~~~dr~~~   45 (275)
                      |++|.|-| .+-+|.++|+.|.   +.|++|++.+|+++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~   40 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   40 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            56798999 5889999999986   46899999999975

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.28  E-value=0.6  Score=36.07  Aligned_cols=89  Identities=12%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH----HcC--ceE-ecChHHH-hccCCCEEEEec-----
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH----RSG--ISF-FSDKRAF-LEADNDVILIST-----   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~----~~g--~~~-~~~~~~~-~~~~aD~iilav-----   75 (275)
                      ...+|.=||+|. | .++..|++.|++|+++|.++. +..|+    +.+  +.. ..+..+. .-...|+|+.+-     
T Consensus        41 ~~~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~  118 (251)
T d1wzna1          41 EVRRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMY  118 (251)
T ss_dssp             CCCEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGG
T ss_pred             CCCEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhc
Confidence            345899999986 4 345678889999999999985 33333    233  322 2233331 113468877652     


Q ss_pred             -CchhHHHHhhcC-CCCCCCCCc-EEEeCC
Q 023897           76 -SILSLSEVLNSL-PVHCLQRRT-LIADVL  102 (275)
Q Consensus        76 -p~~~~~~v~~~l-~~~~l~~~~-iv~d~~  102 (275)
                       .......+++++ ..  |++|. +++|..
T Consensus       119 ~~~~~~~~~L~~~~~~--LkpgG~lii~~~  146 (251)
T d1wzna1         119 FDEEDLRKLFSKVAEA--LKPGGVFITDFP  146 (251)
T ss_dssp             SCHHHHHHHHHHHHHH--EEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHH--cCCCcEEEEEec
Confidence             223345677777 55  66654 555543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.37  Score=42.49  Aligned_cols=34  Identities=12%  Similarity=0.192  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ..+|+|||+|.+|+-+++.|...|. .++++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4689999999999999999999996 799988753

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.09  E-value=0.37  Score=35.63  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=25.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCC-CeEEEEc
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQG-HILRATS   41 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~d   41 (275)
                      +||||=|+|+||+.+.+.+.+.. .+|...+
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaIN   32 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIN   32 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence            69999999999999999988774 5766654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=85.00  E-value=3.4  Score=30.32  Aligned_cols=34  Identities=12%  Similarity=-0.007  Sum_probs=27.3

Q ss_pred             CCeEEEE--cCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           11 TLKIGII--GFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        11 ~~~I~II--G~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..+|.|+  |.|.+|.+..+..+..|.+|++..+++
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~   64 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR   64 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecc
Confidence            3578888  579999998888888899998876654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=84.81  E-value=0.41  Score=38.83  Aligned_cols=32  Identities=22%  Similarity=0.043  Sum_probs=29.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      -|.|||.|.-|.+-|..++++|.+|.+.++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            38999999999999999999999999998875

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.39  E-value=0.59  Score=36.45  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             CeEE-EEc-CChHHHHHHHHHHHCCCe-------EEEEcCChh
Q 023897           12 LKIG-IIG-FGPFGQFLAKTMIKQGHI-------LRATSRTDH   45 (275)
Q Consensus        12 ~~I~-IIG-~G~mG~sla~~L~~~g~~-------V~~~dr~~~   45 (275)
                      ++|. |-| .+-||.++|+.|++.|++       |.+++|+++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~   43 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA   43 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHH
Confidence            3555 557 588999999999999986       888999974

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.38  E-value=0.47  Score=37.36  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=27.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHCCCeEEEE-cCChh
Q 023897           11 TLKIGIIG-FGPFGQFLAKTMIKQGHILRAT-SRTDH   45 (275)
Q Consensus        11 ~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~-dr~~~   45 (275)
                      .+.+.|.| .+.+|.++|+.|++.|++|++. +++.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK   42 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChH
Confidence            44566667 6889999999999999999885 45543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.31  E-value=0.39  Score=36.34  Aligned_cols=24  Identities=33%  Similarity=0.819  Sum_probs=21.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHCC
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQG   34 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~g   34 (275)
                      .|||||=|+|+||+.+.+.+.+.+
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~   25 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDG   25 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCChHHHHHHHHHHHcC
Confidence            479999999999999999887654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=84.25  E-value=0.47  Score=39.32  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHCCCeEEEEcC
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQGHILRATSR   42 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr   42 (275)
                      -+.|||.|.-|..+|..|+++|++|.+..+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEa   33 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLER   33 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEc
Confidence            478999999999999999999999999764

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.54  Score=35.77  Aligned_cols=29  Identities=34%  Similarity=0.508  Sum_probs=26.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEE
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRAT   40 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~   40 (275)
                      |||.|+|.+.+|..+...|.+.|++|.++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V   29 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV   29 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999998753

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=83.82  E-value=1.7  Score=31.63  Aligned_cols=53  Identities=11%  Similarity=-0.082  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhccCCCEEEE
Q 023897           20 GPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEADNDVILI   73 (275)
Q Consensus        20 G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~~aD~iil   73 (275)
                      .++..|++..+...|.+|.++.+.. ........++..+.++.++ ++++|+|..
T Consensus        19 ~~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea-v~~aDvI~t   72 (161)
T d1js1x2          19 QAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKA-FEGADFIYA   72 (161)
T ss_dssp             SHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHH-HTTCSEEEE
T ss_pred             cHHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHH-hCCCcceee
Confidence            3588999999999999999998875 2233334567888899997 599999874

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.66  E-value=1.1  Score=29.25  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      |||.|||.|.=--+++..|.+..++|+++--|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            799999999999999999999988988875554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.27  E-value=0.76  Score=35.49  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh--------h-hh-----HHHHcC-ceEecChHHHhccCCCEE
Q 023897            8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD--------H-SQ-----LCHRSG-ISFFSDKRAFLEADNDVI   71 (275)
Q Consensus         8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~--------~-~~-----~a~~~g-~~~~~~~~~~~~~~aD~i   71 (275)
                      .....||.|+|+|.-|..+++.+.+.+. +++.+|+.-        . ..     .+.... .....++.++ +..++++
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~g~~~~  101 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETA-LEGADFF  101 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHH-HTTCSEE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhh-ccCccee
Confidence            3456799999999999999999998875 799998862        0 10     111111 1234466665 4788887


Q ss_pred             EEecCchhH-HHHhhcCCCCCCCCCcEEEeCCC
Q 023897           72 LISTSILSL-SEVLNSLPVHCLQRRTLIADVLS  103 (275)
Q Consensus        72 ilavp~~~~-~~v~~~l~~~~l~~~~iv~d~~s  103 (275)
                      +.......+ .+.+.+.     .+.-+|.-.++
T Consensus       102 ~g~~~~~~~~~e~m~~~-----~~rPIIFpLSN  129 (222)
T d1vl6a1         102 IGVSRGNILKPEWIKKM-----SRKPVIFALAN  129 (222)
T ss_dssp             EECSCSSCSCHHHHTTS-----CSSCEEEECCS
T ss_pred             ccccccccccHHHHhhc-----CCCCEEEecCC
Confidence            776554433 3455443     34456666554

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=83.22  E-value=0.57  Score=38.98  Aligned_cols=30  Identities=17%  Similarity=0.416  Sum_probs=24.2

Q ss_pred             CeEEEEc-------CChHH---HHHHHHHHHCCCeEEEEc
Q 023897           12 LKIGIIG-------FGPFG---QFLAKTMIKQGHILRATS   41 (275)
Q Consensus        12 ~~I~IIG-------~G~mG---~sla~~L~~~g~~V~~~d   41 (275)
                      |||+||+       .|-+|   ..|+++|++.||+|+++.
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt   40 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT   40 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            7899877       25554   778999999999999874

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.16  E-value=0.88  Score=34.47  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=27.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEE
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRAT   40 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~   40 (275)
                      ..|||.|+|.+.++..+.+.|.+.|++|.++
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~~~~~i~~V   32 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLSSGHNVVGV   32 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            5699999999999999999999999987653

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.85  E-value=0.57  Score=38.33  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=28.3

Q ss_pred             CeEEEE-cCC---hHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGII-GFG---PFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~II-G~G---~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      .||++| |+|   -||.++|+.|++.|.+|.+.+++..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            367766 765   6999999999999999999888764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.65  E-value=0.6  Score=31.40  Aligned_cols=35  Identities=9%  Similarity=-0.057  Sum_probs=28.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~   44 (275)
                      ..++|.|||.|.-|.=+|..|++.+-+++...|.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            56899999999999999999998776655544443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=82.65  E-value=0.73  Score=34.02  Aligned_cols=31  Identities=23%  Similarity=0.529  Sum_probs=25.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHC-CCeEEEEc
Q 023897           11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRATS   41 (275)
Q Consensus        11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~d   41 (275)
                      +.||||=|+|++|+.+.+.+.+. .++|....
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            35899999999999999888765 46777653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.39  E-value=0.76  Score=35.85  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=25.8

Q ss_pred             EEEE-c-CChHHHHHHHHHHHCCCeEEEEc-CChh
Q 023897           14 IGII-G-FGPFGQFLAKTMIKQGHILRATS-RTDH   45 (275)
Q Consensus        14 I~II-G-~G~mG~sla~~L~~~g~~V~~~d-r~~~   45 (275)
                      |.+| | .+.||.++|+.|++.|++|++.+ |+++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~   37 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK   37 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            5555 6 68999999999999999998854 5553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.30  E-value=0.81  Score=35.78  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897           12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH   45 (275)
Q Consensus        12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~   45 (275)
                      ..+.|||.|..|...|..+++.|.+|.++++.+.
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            4599999999999999999999999999987653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.28  E-value=1.7  Score=31.16  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      ...||.|||.|..|.=.|..+.+.|. .|+++.|.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            45689999999999999999999886 577776643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.21  E-value=0.75  Score=33.95  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             eEEEEcCChHHHHHHHHHHHC---CCeEEEEc
Q 023897           13 KIGIIGFGPFGQFLAKTMIKQ---GHILRATS   41 (275)
Q Consensus        13 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d   41 (275)
                      ||||=|+|++|+.+.+.+.+.   +.+|...+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            899999999999999998753   35766553

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.63  E-value=1.8  Score=32.27  Aligned_cols=75  Identities=16%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             CCeEEEE-----c-CChHHHHHHHHHHHCCCeEEEEcCCh-hhh------HHHHcC-----ceEecChHHHhccCCCEEE
Q 023897           11 TLKIGII-----G-FGPFGQFLAKTMIKQGHILRATSRTD-HSQ------LCHRSG-----ISFFSDKRAFLEADNDVIL   72 (275)
Q Consensus        11 ~~~I~II-----G-~G~mG~sla~~L~~~g~~V~~~dr~~-~~~------~a~~~g-----~~~~~~~~~~~~~~aD~ii   72 (275)
                      .|||.||     | +-.|...++..+.+.|++|.+++..+ ...      .+...+     -......++ + .++|.||
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i-~~aD~ii   79 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPAD-L-EWAEAIV   79 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHH-H-HHCSEEE
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhh-H-hhCCEeE
Confidence            5899988     3 34678888999999999998876553 111      111111     111223455 3 6899999


Q ss_pred             EecCch------hHHHHhhcC
Q 023897           73 ISTSIL------SLSEVLNSL   87 (275)
Q Consensus        73 lavp~~------~~~~v~~~l   87 (275)
                      ++.|..      .+...++.+
T Consensus        80 ~gsPvy~~~~s~~~k~flDr~  100 (201)
T d1ydga_          80 FSSPTRFGGATSQMRAFIDTL  100 (201)
T ss_dssp             EEEEEETTEECHHHHHHHHTT
T ss_pred             EecceeeeeccchhHHHHHHh
Confidence            999984      456666654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=81.58  E-value=0.85  Score=35.94  Aligned_cols=55  Identities=13%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEec
Q 023897           10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILIST   75 (275)
Q Consensus        10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilav   75 (275)
                      ...||++||.-    .+...+.+.|.++++++|++..      |.......+++ +.+||++|++=
T Consensus       121 ~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~------gd~p~~~~~~l-Lp~aD~viiTG  175 (251)
T d2h1qa1         121 KGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE------GDYPLPASEFI-LPECDYVYITC  175 (251)
T ss_dssp             TTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT------TCEEGGGHHHH-GGGCSEEEEET
T ss_pred             CCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC------CCCCchHHHHh-hhcCCEEEEEe
Confidence            35799999863    3566778888999999999741      22222334454 58999988873

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.51  E-value=0.68  Score=35.33  Aligned_cols=88  Identities=8%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC--ChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH----cCc----eE-ecChHHHhccCCCEEEEec--
Q 023897           10 STLKIGIIGF--GPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR----SGI----SF-FSDKRAFLEADNDVILIST--   75 (275)
Q Consensus        10 ~~~~I~IIG~--G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~----~g~----~~-~~~~~~~~~~~aD~iilav--   75 (275)
                      ...+|.=||+  |.+...+++.+...+.+|++.|.++. .+.|.+    .+.    .. ..+..+.-...+|+++...  
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            3458999997  55555566555556889999999986 344432    121    11 1222221124557665542  


Q ss_pred             ---CchhHHHHhhcC-CCCCCCCCcEEE
Q 023897           76 ---SILSLSEVLNSL-PVHCLQRRTLIA   99 (275)
Q Consensus        76 ---p~~~~~~v~~~l-~~~~l~~~~iv~   99 (275)
                         +......+++++ ..  |+||..++
T Consensus       119 ~~~~~~d~~~~l~~i~~~--LkpgG~li  144 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEG--LNPNGVLV  144 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHH--EEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHh--CCCCceee
Confidence               334556777777 55  77766444

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=80.15  E-value=1.4  Score=34.24  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897            9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTD   44 (275)
Q Consensus         9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~   44 (275)
                      .....|.|.| .|.||.++|+.|.+.|+ +|+++.|+.
T Consensus         7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           7 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             CCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3445788888 69999999999999998 588888874

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=80.06  E-value=3.2  Score=29.76  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=44.4

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHCCC-eEEEEcCChh------hhHHHHcCc--eEecChHHHhccCCCEEEEe
Q 023897           10 STLKIGIIGF---GPFGQFLAKTMIKQGH-ILRATSRTDH------SQLCHRSGI--SFFSDKRAFLEADNDVILIS   74 (275)
Q Consensus        10 ~~~~I~IIG~---G~mG~sla~~L~~~g~-~V~~~dr~~~------~~~a~~~g~--~~~~~~~~~~~~~aD~iila   74 (275)
                      .+.||++||=   |++..|+...+...|. .++++.+...      ...+...|.  ..+.+++++ ++++|+|...
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a-~~~aDvvy~~   78 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEV-MAEVDILYMT   78 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTT-GGGCSEEEEC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHH-hCcCceEEee
Confidence            4679999994   6699999999998864 5556554321      123444454  567888886 5899988744