Citrus Sinensis ID: 023925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccEEcHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHEHHEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHcHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MFLPEHQYIDALMLHnycsgrcsystiawagslshgrienvsyaykhtssaDYMFRVFNALGQISFAFAGHAVALEIQatipstpekpskiLMWKGALGAYFVNAICYFPVALIGYwafgqdvddnVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMmikrmnfppgaAVRVVARSAYVAFTLFVGvtfpffgdllgffggfgftptsyflpsimwlvikkpkrfspkwiINWASIFIGVFIMLASTIGGfrnivadastysfyt
Flexible Loop (DISEMBL)
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Low Complexity Region (SEG)
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGaavrvvarsayvaFTLFVGVtfpffgdllgffggfgftptSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Disordered region (IsUnstruct)
*****HQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST**KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF**
Disordered Region (DISOPRED)
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Disordered Region (DISEMBL)
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Disordered Region (DISPRO)
*FLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9C6M2	440	Lysine histidine transpor	yes	no	0.985	0.615	0.720	1e-102
Q9FKS8	446	Lysine histidine transpor	no	no	0.92	0.567	0.584	1e-85
Q9C733	453	Lysine histidine transpor	no	no	0.92	0.558	0.569	2e-79
Q9LRB5	441	Lysine histidine transpor	no	no	0.92	0.573	0.565	8e-75
O22719	451	Lysine histidine transpor	no	no	0.883	0.538	0.522	1e-72
Q9SR44	441	Lysine histidine transpor	no	no	0.92	0.573	0.573	1e-71
Q9SS86	455	Lysine histidine transpor	no	no	0.876	0.529	0.506	1e-65
Q9C9J0	448	Lysine histidine transpor	no	no	0.916	0.562	0.537	3e-62
Q9SX98	519	Lysine histidine transpor	no	no	0.912	0.483	0.353	3e-35
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.861	0.493	0.292	1e-25

>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/272 (72%), Positives = 224/272 (82%), Gaps = 1/272 (0%)

Query: 3   LPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 62
           LP    +  + L       C YSTIAW GS++HGR+ +VSY YK T+  D+ FRVFNALG
Sbjct: 169 LPNFNSVAGVSLAAAVMSLC-YSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALG 227

Query: 63  QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 122
           QISFAFAGHAVALEIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQD
Sbjct: 228 QISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQD 287

Query: 123 VDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRV 182
           VDDNVLM L+RP WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G  +R 
Sbjct: 288 VDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRF 347

Query: 183 VARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIIN 242
             R+ YVAFTLF+GV+FPFFGDLLGFFGGFGF PTS+FLPSIMWL+IKKP+RFS  W +N
Sbjct: 348 FTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVN 407

Query: 243 WASIFIGVFIMLASTIGGFRNIVADASTYSFY 274
           W SI +GVFIMLASTIGG RNI+AD+STYSFY
Sbjct: 408 WISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439

Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/253 (58%), Positives = 189/253 (74%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAWA S S G  E+V Y YK  ++A  +F  F+ LG ++FA+AGH V LEIQATIP
Sbjct: 194 SYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIP 253

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSK  MW+G + AY V A+CYFPVAL+GY+ FG  V+DN+LM+LK+P WLIA AN
Sbjct: 254 STPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATAN 313

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           + VV+HVIGSYQ++AMPVF ++E +++K++NF P   +R   R+ YVA T+FVG+TFPFF
Sbjct: 314 IFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFF 373

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           G LL FFGGF F PT+YFLP ++WL I KPK++S  W  NW  I  G+F+M+ S IGG R
Sbjct: 374 GGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLR 433

Query: 263 NIVADASTYSFYT 275
            IV  A  Y FY+
Sbjct: 434 TIVIQAKGYKFYS 446

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/253 (56%), Positives = 181/253 (71%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW  + + G  E+V Y YK  ++A  +   F  LG I+FA+AGH V LEIQATIP
Sbjct: 201 SYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIP 260

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STP  PSK  MW+G + AY V A+CYFPVAL+GY  FG  V DNVLM+L+ P W IA AN
Sbjct: 261 STPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSLETPVWAIATAN 320

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           L VV+HVIGSYQ+FAMPVF ++E  ++K++NF P   +R + R+ YVA T+F+G+  PFF
Sbjct: 321 LFVVMHVIGSYQIFAMPVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFF 380

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           G LL FFGGF F PTSYFLP IMWL+I KPKRFS  W  NW  I +GV +M+ S+IGG R
Sbjct: 381 GGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLR 440

Query: 263 NIVADASTYSFYT 275
            I+  +  YSF++
Sbjct: 441 QIIIQSKDYSFFS 453

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  280 bits (716), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/253 (56%), Positives = 186/253 (73%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           +YSTIAWA S+  G   +V Y+ + ++    +F   NALG ++FA+AGH V LEIQATIP
Sbjct: 189 TYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIP 248

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPE PSK+ MW+G + AY V AICYFPVA +GY+ FG  VDDN+L+ L++P WLIA AN
Sbjct: 249 STPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMAN 308

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           + VV+HVIGSYQ+FAMPVF +LE +++K+MNF P   +R + RS YVAFT+ V +  PFF
Sbjct: 309 MFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMIVAICVPFF 368

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           G LLGFFGGF F PT+Y+LP IMWLV+KKPKRF   W  NW  I +GV + + + IGG R
Sbjct: 369 GGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLR 428

Query: 263 NIVADASTYSFYT 275
            I+ +A TY F++
Sbjct: 429 TIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/243 (52%), Positives = 169/243 (69%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW  SL+ G   NV Y YK  ++         ALG+++FA+AGH V LEIQATIP
Sbjct: 196 SYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIP 255

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPE PSK  MWKGA+ AY + A CYFPVAL+G+W FG +V++N+L  L+ P  LI  AN
Sbjct: 256 STPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLIIVAN 315

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           + V++H++GSYQV+AMPVF ++E +MIK+ +F P   +R   R  +VA T+ + V  P F
Sbjct: 316 IFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHF 375

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
             LL FFGGF F PT+YF+P I+WL++KKPKRFS  W INW  I +GV +M+ + IGG  
Sbjct: 376 SALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMIIAPIGGLA 435

Query: 263 NIV 265
            ++
Sbjct: 436 KLM 438

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/253 (57%), Positives = 184/253 (72%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAWA S+  G   NV Y+ + ++++  +F   NALG ++FA+AGH V LEIQATIP
Sbjct: 189 SYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIP 248

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSKI MWKG + AY V AICYFPVA + Y+ FG  VDDN+LM L++P WLIA AN
Sbjct: 249 STPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIAN 308

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
             VVVHVIGSYQ++AMPVF +LE  ++K+M F P   +R + R+ YVAFT+FV +  PFF
Sbjct: 309 AFVVVHVIGSYQIYAMPVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMFVAICIPFF 368

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           G LLGFFGGF F PT+Y+LP IMWL IKKPK++   W INW  I +GV + + + IGG R
Sbjct: 369 GGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTILAPIGGLR 428

Query: 263 NIVADASTYSFYT 275
            I+  A  Y F++
Sbjct: 429 TIIISAKNYEFFS 441

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 169/245 (68%), Gaps = 4/245 (1%)

Query: 23  SYSTIAWAGSLSHGRIE-NVSYAY-KHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 80
           SYSTIAW  SL  G    +V Y Y K T+S    F   +ALG+++FA+AGH V LEIQAT
Sbjct: 195 SYSTIAWVASLRKGATTGSVEYGYRKRTTSVPLAF--LSALGEMAFAYAGHNVVLEIQAT 252

Query: 81  IPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAA 140
           IPSTPE PSK  MWKGA+ AY + A CYFPVAL+G+  FG  V++++L +L +P  L+  
Sbjct: 253 IPSTPENPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVEESILESLTKPTALVIV 312

Query: 141 ANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP 200
           AN+ VV+H++GSYQV+AMPVF ++E +MI+  +F P   +R   R  +VA T+ + V  P
Sbjct: 313 ANMFVVIHLLGSYQVYAMPVFDMIESVMIRIWHFSPTRVLRFTIRWTFVAATMGIAVGLP 372

Query: 201 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGG 260
           ++  LL FFGGF F PT+YF+P IMWL++KKPKRFS  W +NW  I  G+ +M+ + IGG
Sbjct: 373 YYSALLSFFGGFVFAPTTYFIPCIMWLILKKPKRFSLSWCMNWFCIIFGLVLMIIAPIGG 432

Query: 261 FRNIV 265
              ++
Sbjct: 433 LAKLI 437

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score =  238 bits (607), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 24  YSTIAWAGSLSHGRIENVS-YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           YS IA   S++ G     S Y  +  + A  +F  FN +G I+FAFAGH+V LEIQATIP
Sbjct: 196 YSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIP 255

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPE PSK  MWKG + AY +  ICY  VA+ GYWAFG  V+D+VL++L+RP WLIAAAN
Sbjct: 256 STPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAAN 315

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
            MV +HVIGSYQVFAM VF  +E  ++K + F P   +R+VARS YVA    V V  PFF
Sbjct: 316 FMVFIHVIGSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFF 375

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           G LLGFFGG  F+ TSYFLP I+WL++K+PKRFS  W  +W +I  G+ I + + IGG R
Sbjct: 376 GGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMR 435

Query: 263 NIVADASTYSFYT 275
           +I+  A TY  ++
Sbjct: 436 HIILSARTYKLFS 448

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 142/260 (54%), Gaps = 9/260 (3%)

Query: 23  SYSTIAWAGSLSHGRIENVSYA-YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATI 81
           +YST+ W  S+S  R   +SY      S++  +F V NALG I+FAF GH + LEIQ+T+
Sbjct: 257 TYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHNLVLEIQSTM 316

Query: 82  PSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL-------KRP 134
           PST + P+ + MW+GA  +YF+ A+C FP+++ G+WA+G  +    ++A          P
Sbjct: 317 PSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSGGMLAALYAFHIHDIP 376

Query: 135 GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLF 194
             L+A A L+VV   + S+Q+++MP F   E     R N P    VR   R  +   + F
Sbjct: 377 RGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFVSFF 436

Query: 195 VGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIML 254
           +GV  PF    L    G    P ++  P  MW++IKKP ++S  W  +W   ++GV   L
Sbjct: 437 IGVALPFL-SSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSL 495

Query: 255 ASTIGGFRNIVADASTYSFY 274
           A +IGG  ++V +     F+
Sbjct: 496 AFSIGGIWSMVTNGLKLKFF 515

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 26/263 (9%)

Query: 31  GSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 90
           GSL+   +  V+ +   TSS   ++R F +LG I+FA++   + +EIQ T+ S P + + 
Sbjct: 217 GSLTGVTVGTVTLSGTVTSSQK-IWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNT 275

Query: 91  ILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLM--ALKRPGWLIAAANLMVVVH 148
             M K    +  V  + Y     +GY AFG +   N+L     + P WL+  ANL +V+H
Sbjct: 276 --MRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIH 333

Query: 149 VIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAV-------------------RVVARSAYV 189
           ++G+YQV+  P+F  +E    +R  FP    V                   R+V R+ +V
Sbjct: 334 LVGAYQVYCQPLFAFVEKEASRR--FPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFV 391

Query: 190 AFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIG 249
             T  + +  PFF D++G  G  GF P + + P  M++  K   R+  KW+         
Sbjct: 392 MTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTC 451

Query: 250 VFIMLASTIGGFRNIVADASTYS 272
           +F+ +A+  G    IV+D   Y 
Sbjct: 452 LFVSVAAAAGSVIGIVSDLKVYK 474

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
255576517	418	amino acid transporter, putative [Ricinu	0.92	0.605	0.865	1e-116
224111726	423	lysine/histidine transporter [Populus tr	0.92	0.598	0.849	1e-114
224099345	435	lysine/histidine transporter [Populus tr	0.916	0.579	0.853	1e-113
147858122	420	hypothetical protein VITISV_012213 [Viti	0.989	0.647	0.787	1e-111
225423911	438	PREDICTED: lysine histidine transporter-	0.989	0.621	0.787	1e-111
449531786	358	PREDICTED: lysine histidine transporter-	0.92	0.706	0.822	1e-110
449434650	437	PREDICTED: lysine histidine transporter-	0.92	0.578	0.822	1e-110
356535563	419	PREDICTED: lysine histidine transporter-	0.92	0.603	0.830	1e-109
356495960	437	PREDICTED: lysine histidine transporter-	0.92	0.578	0.806	1e-108
357488425	439	Lysine/histidine transporter [Medicago t	0.92	0.576	0.802	1e-108

>gi|255576517|ref|XP_002529150.1| amino acid transporter, putative [Ricinus communis] gi|223531429|gb|EEF33263.1| amino acid transporter, putative [Ricinus communis]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/253 (86%), Positives = 237/253 (93%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW GSL+HGR++NVSYAYK TS AD+MFRVFNALGQISFAFAGHAV LEIQATIP
Sbjct: 166 SYSTIAWVGSLAHGRVDNVSYAYKETSGADHMFRVFNALGQISFAFAGHAVVLEIQATIP 225

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSK+ MWKGALGAYF+NAICYFPVALIGYWAFGQDVDDNVLMALK+P WLIA+AN
Sbjct: 226 STPEKPSKVPMWKGALGAYFINAICYFPVALIGYWAFGQDVDDNVLMALKKPAWLIASAN 285

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMVVVHVIGSYQV+AMPVF +LE MM+KR+NFPPG A+R++ RSAYVAFTLFVGVTFPFF
Sbjct: 286 LMVVVHVIGSYQVYAMPVFAMLENMMMKRLNFPPGLALRLLVRSAYVAFTLFVGVTFPFF 345

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWL+IKKPKRFS KW INWASI +GVFIM+ASTIGGFR
Sbjct: 346 GDLLGFFGGFGFAPTSYFLPSIMWLIIKKPKRFSAKWFINWASILVGVFIMIASTIGGFR 405

Query: 263 NIVADASTYSFYT 275
           NIV DASTY FYT
Sbjct: 406 NIVTDASTYRFYT 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111726|ref|XP_002315954.1| lysine/histidine transporter [Populus trichocarpa] gi|222864994|gb|EEF02125.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/253 (84%), Positives = 235/253 (92%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAWAGSL+HG+I+NVSYAYK TS+ADYMFRVFNALG+ISFAFAGHAV LEIQATIP
Sbjct: 171 SYSTIAWAGSLAHGQIDNVSYAYKSTSAADYMFRVFNALGEISFAFAGHAVVLEIQATIP 230

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSKI MWKGALGAYF+NAICYFPVA+IGYWAFGQDVDDNVL  LKRP WLIA+AN
Sbjct: 231 STPEKPSKIPMWKGALGAYFINAICYFPVAIIGYWAFGQDVDDNVLTDLKRPAWLIASAN 290

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMVVVHVIGSYQV+AMPVF +LE MM+KR+NFPPG A+R++ RS YVAFTLFVGVTFPFF
Sbjct: 291 LMVVVHVIGSYQVYAMPVFDMLERMMMKRLNFPPGIALRLLTRSTYVAFTLFVGVTFPFF 350

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLP +MWL+IKKPKRFS KW INWA IF+GVFIM+ASTIGGFR
Sbjct: 351 GDLLGFFGGFGFAPTSYFLPCVMWLLIKKPKRFSTKWFINWACIFVGVFIMIASTIGGFR 410

Query: 263 NIVADASTYSFYT 275
           NIV D+STY FYT
Sbjct: 411 NIVTDSSTYRFYT 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099345|ref|XP_002311447.1| lysine/histidine transporter [Populus trichocarpa] gi|222851267|gb|EEE88814.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 234/252 (92%)

Query: 24  YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 83
           YSTIAWAGSL+HG+I+NVSYAYK+TS+ADYMFRVFNALG+ISFAFAGHAV LEIQATIPS
Sbjct: 184 YSTIAWAGSLAHGQIDNVSYAYKNTSAADYMFRVFNALGEISFAFAGHAVVLEIQATIPS 243

Query: 84  TPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANL 143
           T EKPSKI MWKGALGAYF+NAICYFPVALIGYWAFGQDVDDNVLM LKRP WLIA+ANL
Sbjct: 244 TTEKPSKIPMWKGALGAYFINAICYFPVALIGYWAFGQDVDDNVLMELKRPAWLIASANL 303

Query: 144 MVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFG 203
           MVVVHVIGSYQV+AMPVF +LE MM+KR +FPPG A+R+V RS YVAFTLFVGVTFPFFG
Sbjct: 304 MVVVHVIGSYQVYAMPVFDMLERMMMKRFSFPPGLALRLVTRSTYVAFTLFVGVTFPFFG 363

Query: 204 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRN 263
           DLLGFFGGFGF PTSYFLP +MWL+IKKPKRFS KW INWA IF+GVFIM+ASTIGGFRN
Sbjct: 364 DLLGFFGGFGFAPTSYFLPCVMWLIIKKPKRFSTKWFINWACIFVGVFIMMASTIGGFRN 423

Query: 264 IVADASTYSFYT 275
           IV DAS+Y FYT
Sbjct: 424 IVTDASSYRFYT 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858122|emb|CAN79675.1| hypothetical protein VITISV_012213 [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/273 (78%), Positives = 240/273 (87%), Gaps = 1/273 (0%)

Query: 3   LPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 62
           LP    +  + L       C YSTIAW G LS G+IENV+Y YK+TS +DYMFRVFNALG
Sbjct: 149 LPNFNSVAGVSLAAAIMSLC-YSTIAWVGCLSKGQIENVNYGYKYTSPSDYMFRVFNALG 207

Query: 63  QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 122
           QI+FAFAGHAVALEIQATIPSTPEKPS+I MWKGA+GAYF+NAICYFPVA +GYWAFGQD
Sbjct: 208 QITFAFAGHAVALEIQATIPSTPEKPSRIPMWKGAIGAYFINAICYFPVAFVGYWAFGQD 267

Query: 123 VDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRV 182
           VDDNVLMALKRP WLIA+ANLMVV+HVIGSYQV+AMPVF LLE MM+KR+NFP G A+R+
Sbjct: 268 VDDNVLMALKRPAWLIASANLMVVIHVIGSYQVYAMPVFALLEKMMVKRLNFPQGIALRL 327

Query: 183 VARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIIN 242
           +ARSAYVAFTLFVGVTFPFFGDLLGFFGGFGF PTSYFLPSI+WLV+KKP+ FS  W+IN
Sbjct: 328 IARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFAPTSYFLPSIIWLVLKKPRMFSISWLIN 387

Query: 243 WASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
           WASIFIGVFIMLASTIGG RNI+ DASTYSFY+
Sbjct: 388 WASIFIGVFIMLASTIGGLRNIIIDASTYSFYS 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423911|ref|XP_002281867.1| PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera] gi|297737853|emb|CBI27054.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/273 (78%), Positives = 240/273 (87%), Gaps = 1/273 (0%)

Query: 3   LPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 62
           LP    +  + L       C YSTIAW G LS G+IENV+Y YK+TS +DYMFRVFNALG
Sbjct: 167 LPNFNSVAGVSLAAAIMSLC-YSTIAWVGCLSKGQIENVNYGYKYTSPSDYMFRVFNALG 225

Query: 63  QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 122
           QI+FAFAGHAVALEIQATIPSTPEKPS+I MWKGA+GAYF+NAICYFPVA +GYWAFGQD
Sbjct: 226 QITFAFAGHAVALEIQATIPSTPEKPSRIPMWKGAIGAYFINAICYFPVAFVGYWAFGQD 285

Query: 123 VDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRV 182
           VDDNVLMALKRP WLIA+ANLMVV+HVIGSYQV+AMPVF LLE MM+KR+NFP G A+R+
Sbjct: 286 VDDNVLMALKRPAWLIASANLMVVIHVIGSYQVYAMPVFALLEKMMVKRLNFPQGIALRL 345

Query: 183 VARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIIN 242
           +ARSAYVAFTLFVGVTFPFFGDLLGFFGGFGF PTSYFLPSI+WLV+KKP+ FS  W+IN
Sbjct: 346 IARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFAPTSYFLPSIIWLVLKKPRMFSISWLIN 405

Query: 243 WASIFIGVFIMLASTIGGFRNIVADASTYSFYT 275
           WASIFIGVFIMLASTIGG RNI+ DASTYSFY+
Sbjct: 406 WASIFIGVFIMLASTIGGLRNIIIDASTYSFYS 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531786|ref|XP_004172866.1| PREDICTED: lysine histidine transporter-like 6-like, partial [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/253 (82%), Positives = 229/253 (90%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW GSLS GRIENVSYAYK TS  D MFRVFNALGQISFAFAGHAV LEIQATIP
Sbjct: 106 SYSTIAWVGSLSRGRIENVSYAYKETSVQDSMFRVFNALGQISFAFAGHAVVLEIQATIP 165

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPS++ MWKGA+GAYF+NAICYFPVALIGYWAFGQDV+DNVL+ LK+P WLIA+AN
Sbjct: 166 STPEKPSRVPMWKGAMGAYFINAICYFPVALIGYWAFGQDVEDNVLLNLKKPAWLIASAN 225

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMVVVHVIGSYQV+AMPVF +LE M+ KR NFP G  +R + RSAYVAFT+F+GVTFPFF
Sbjct: 226 LMVVVHVIGSYQVYAMPVFDMLERMIRKRFNFPDGFCLRFITRSAYVAFTIFIGVTFPFF 285

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWLVIKKPKR+S  W+INWASIF+GVFIMLAST+GG R
Sbjct: 286 GDLLGFFGGFGFAPTSYFLPSIMWLVIKKPKRYSCNWLINWASIFVGVFIMLASTVGGLR 345

Query: 263 NIVADASTYSFYT 275
           NI+ DASTY+FYT
Sbjct: 346 NIITDASTYTFYT 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434650|ref|XP_004135109.1| PREDICTED: lysine histidine transporter-like 6-like [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/253 (82%), Positives = 229/253 (90%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW GSLS GRIENVSYAYK TS  D MFRVFNALGQISFAFAGHAV LEIQATIP
Sbjct: 185 SYSTIAWVGSLSRGRIENVSYAYKETSVQDSMFRVFNALGQISFAFAGHAVVLEIQATIP 244

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPS++ MWKGA+GAYF+NAICYFPVALIGYWAFGQDV+DNVL+ LK+P WLIA+AN
Sbjct: 245 STPEKPSRVPMWKGAMGAYFINAICYFPVALIGYWAFGQDVEDNVLLNLKKPAWLIASAN 304

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMVVVHVIGSYQV+AMPVF +LE M+ KR NFP G  +R + RSAYVAFT+F+GVTFPFF
Sbjct: 305 LMVVVHVIGSYQVYAMPVFDMLERMIRKRFNFPDGFCLRFITRSAYVAFTIFIGVTFPFF 364

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWLVIKKPKR+S  W+INWASIF+GVFIMLAST+GG R
Sbjct: 365 GDLLGFFGGFGFAPTSYFLPSIMWLVIKKPKRYSCNWLINWASIFVGVFIMLASTVGGLR 424

Query: 263 NIVADASTYSFYT 275
           NI+ DASTY+FYT
Sbjct: 425 NIITDASTYTFYT 437

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535563|ref|XP_003536314.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/253 (83%), Positives = 231/253 (91%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW   L+ GRIENVSYAYK TS+ D MFRVFNALGQISFAFAGHAVALEIQATIP
Sbjct: 167 SYSTIAWLACLARGRIENVSYAYKRTSNTDLMFRVFNALGQISFAFAGHAVALEIQATIP 226

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPS+I MW GALGAYF+NAICYFPVALIGYWAFGQ VDDNVLMAL++P WLIA+AN
Sbjct: 227 STPEKPSRIPMWHGALGAYFINAICYFPVALIGYWAFGQAVDDNVLMALEKPAWLIASAN 286

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMV +HV+GSYQV+AMPVF L+E MMI+R+NF PG A+R+VAR+AYVAFTLFVGVTFPFF
Sbjct: 287 LMVFIHVVGSYQVYAMPVFDLIERMMIRRLNFAPGLALRLVARTAYVAFTLFVGVTFPFF 346

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWL+IKKP+RFS  W INWA+I+IGV IMLASTIGG R
Sbjct: 347 GDLLGFFGGFGFAPTSYFLPSIMWLIIKKPRRFSINWFINWAAIYIGVCIMLASTIGGLR 406

Query: 263 NIVADASTYSFYT 275
           NIVADAS+YSFYT
Sbjct: 407 NIVADASSYSFYT 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495960|ref|XP_003516838.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 225/253 (88%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTI+W   L+ GR+ENVSYAYK T+S D MFR+FNALGQISFAFAGHAVALEIQATIP
Sbjct: 185 SYSTISWVACLARGRVENVSYAYKKTTSTDLMFRIFNALGQISFAFAGHAVALEIQATIP 244

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSKI MWKGA+GAY +NAICYFPVAL+GYWAFG+DV+DNVLM  +RP WLIA+AN
Sbjct: 245 STPEKPSKIPMWKGAIGAYVINAICYFPVALVGYWAFGRDVEDNVLMEFERPAWLIASAN 304

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMV +HV+GSYQV+AMPVF L+E MM+KR  FPPG A+R+VARSAYVAFTLFVGVTFPFF
Sbjct: 305 LMVFIHVVGSYQVYAMPVFDLIESMMVKRFKFPPGVALRLVARSAYVAFTLFVGVTFPFF 364

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWL+IKKPKRFS  W INW SI+IGV IMLASTIGG R
Sbjct: 365 GDLLGFFGGFGFAPTSYFLPSIMWLIIKKPKRFSTNWFINWISIYIGVCIMLASTIGGLR 424

Query: 263 NIVADASTYSFYT 275
           NI  DASTY FYT
Sbjct: 425 NIATDASTYKFYT 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488425|ref|XP_003614500.1| Lysine/histidine transporter [Medicago truncatula] gi|355515835|gb|AES97458.1| Lysine/histidine transporter [Medicago truncatula]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/253 (80%), Positives = 233/253 (92%)

Query: 23  SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
           SYSTIAW   L+ GR+ENVSY+YK TS++D +FR+FNALGQISFAFAGHAVALEIQATIP
Sbjct: 187 SYSTIAWVACLAKGRVENVSYSYKGTSTSDLIFRIFNALGQISFAFAGHAVALEIQATIP 246

Query: 83  STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
           STPEKPSKI MWKGA+GAY +NAICYFPVALIGYWAFG+DV+DNVLM+L+RP WLIA+AN
Sbjct: 247 STPEKPSKIPMWKGAIGAYVINAICYFPVALIGYWAFGRDVEDNVLMSLERPAWLIASAN 306

Query: 143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 202
           LMV +HV+GSYQV+AMPVF L+E MMIK+ NFPPG  +R+VARS++VAFTLF+GVTFPFF
Sbjct: 307 LMVFIHVVGSYQVYAMPVFDLIERMMIKKWNFPPGLPLRLVARSSFVAFTLFIGVTFPFF 366

Query: 203 GDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
           GDLLGFFGGFGF PTSYFLPSIMWL+IKKPKRFS  W INWA+I+IGV IMLASTIGGFR
Sbjct: 367 GDLLGFFGGFGFAPTSYFLPSIMWLIIKKPKRFSINWFINWAAIYIGVCIMLASTIGGFR 426

Query: 263 NIVADASTYSFYT 275
           NI+AD+S+YSFYT
Sbjct: 427 NIIADSSSYSFYT 439

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.985	0.615	0.636	3.1e-90
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.92	0.573	0.517	3.2e-72
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.92	0.567	0.501	1.5e-67
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.92	0.573	0.482	3.2e-65
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.92	0.573	0.494	4.1e-65
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.92	0.558	0.494	1.2e-63
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.883	0.538	0.456	3.5e-59
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.916	0.562	0.454	5.3e-56
TAIR|locus:2015383	519	AT1G47670 [Arabidopsis thalian	0.912	0.483	0.330	1.3e-34
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.509	0.291	0.333	6.9e-20

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 173/272 (63%), Positives = 198/272 (72%)

Query:     3 LPEHQYIDALMLHNYCSGRCSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 62
             LP    +  + L       C YSTIAW GS++HGR+ +VSY YK T+  D+ FRVFNALG
Sbjct:   169 LPNFNSVAGVSLAAAVMSLC-YSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALG 227

Query:    63 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 122
             QISFAFAGHAVALEIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQD
Sbjct:   228 QISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQD 287

Query:   123 VDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXX 182
             VDDNVLM L+RP WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G     
Sbjct:   288 VDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRF 347

Query:   183 XXXXXXXXFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIIN 242
                     FTLF+GV                    S+FLPSIMWL+IKKP+RFS  W +N
Sbjct:   348 FTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVN 407

Query:   243 WASIFIGVFIMLASTIGGFRNIVADASTYSFY 274
             W SI +GVFIMLASTIGG RNI+AD+STYSFY
Sbjct:   408 WISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 131/253 (51%), Positives = 169/253 (66%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             SYSTIAW  S+  G++ +V Y  + T+S   +F  F+ALG ++FA+AGH V LEIQATIP
Sbjct:   189 SYSTIAWGASVDKGKVADVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIP 248

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPEKPSK  MWKG + AY + A+CYFPVAL+GYWAFG  VDDN+L+ L RP WLIA AN
Sbjct:   249 STPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDNILITLSRPKWLIALAN 308

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
             +MVV+HVIGSYQ++AMPVF ++E +++K++ FPPG             FT+F+ +     
Sbjct:   309 MMVVIHVIGSYQIYAMPVFDMIETVLVKKLRFPPGLTLRLIARTLYVAFTMFIAITFPFF 368

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            +YFLP IMWL I KP+RFS  W  NW  I +GV +M+ S IGG R
Sbjct:   369 GGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWFTNWICIILGVMLMILSPIGGLR 428

Query:   263 NIVADASTYSFYT 275
              I+ DA TY FY+
Sbjct:   429 QIIIDAKTYKFYS 441

GO:0009536 "plastid" evidence=IC

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 127/253 (50%), Positives = 166/253 (65%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             SYSTIAWA S S G  E+V Y YK  ++A  +F  F+ LG ++FA+AGH V LEIQATIP
Sbjct:   194 SYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIP 253

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPEKPSK  MW+G + AY V A+CYFPVAL+GY+ FG  V+DN+LM+LK+P WLIA AN
Sbjct:   254 STPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATAN 313

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
             + VV+HVIGSYQ++AMPVF ++E +++K++NF P               T+FVG+     
Sbjct:   314 IFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFF 373

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            +YFLP ++WL I KPK++S  W  NW  I  G+F+M+ S IGG R
Sbjct:   374 GGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLR 433

Query:   263 NIVADASTYSFYT 275
              IV  A  Y FY+
Sbjct:   434 TIVIQAKGYKFYS 446

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 122/253 (48%), Positives = 163/253 (64%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             +YSTIAWA S+  G   +V Y+ + ++    +F   NALG ++FA+AGH V LEIQATIP
Sbjct:   189 TYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIP 248

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPE PSK+ MW+G + AY V AICYFPVA +GY+ FG  VDDN+L+ L++P WLIA AN
Sbjct:   249 STPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMAN 308

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
             + VV+HVIGSYQ+FAMPVF +LE +++K+MNF P              FT+ V +     
Sbjct:   309 MFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMIVAICVPFF 368

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            +Y+LP IMWLV+KKPKRF   W  NW  I +GV + + + IGG R
Sbjct:   369 GGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLR 428

Query:   263 NIVADASTYSFYT 275
              I+ +A TY F++
Sbjct:   429 TIIINAKTYKFFS 441

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 125/253 (49%), Positives = 161/253 (63%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             SYSTIAWA S+  G   NV Y+ + ++++  +F   NALG ++FA+AGH V LEIQATIP
Sbjct:   189 SYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIP 248

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPEKPSKI MWKG + AY V AICYFPVA + Y+ FG  VDDN+LM L++P WLIA AN
Sbjct:   249 STPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIAN 308

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
               VVVHVIGSYQ++AMPVF +LE  ++K+M F P              FT+FV +     
Sbjct:   309 AFVVVHVIGSYQIYAMPVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMFVAICIPFF 368

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            +Y+LP IMWL IKKPK++   W INW  I +GV + + + IGG R
Sbjct:   369 GGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTILAPIGGLR 428

Query:   263 NIVADASTYSFYT 275
              I+  A  Y F++
Sbjct:   429 TIIISAKNYEFFS 441

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 125/253 (49%), Positives = 159/253 (62%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             SYSTIAW  + + G  E+V Y YK  ++A  +   F  LG I+FA+AGH V LEIQATIP
Sbjct:   201 SYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIP 260

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STP  PSK  MW+G + AY V A+CYFPVAL+GY  FG  V DNVLM+L+ P W IA AN
Sbjct:   261 STPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSLETPVWAIATAN 320

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
             L VV+HVIGSYQ+FAMPVF ++E  ++K++NF P               T+F+G+     
Sbjct:   321 LFVVMHVIGSYQIFAMPVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFF 380

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            SYFLP IMWL+I KPKRFS  W  NW  I +GV +M+ S+IGG R
Sbjct:   381 GGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLR 440

Query:   263 NIVADASTYSFYT 275
              I+  +  YSF++
Sbjct:   441 QIIIQSKDYSFFS 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 111/243 (45%), Positives = 151/243 (62%)

Query:    23 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             SYSTIAW  SL+ G   NV Y YK  ++         ALG+++FA+AGH V LEIQATIP
Sbjct:   196 SYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIP 255

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPE PSK  MWKGA+ AY + A CYFPVAL+G+W FG +V++N+L  L+ P  LI  AN
Sbjct:   256 STPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLIIVAN 315

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
             + V++H++GSYQV+AMPVF ++E +MIK+ +F P               T+ + V     
Sbjct:   316 IFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHF 375

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            +YF+P I+WL++KKPKRFS  W INW  I +GV +M+ + IGG  
Sbjct:   376 SALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMIIAPIGGLA 435

Query:   263 NIV 265
              ++
Sbjct:   436 KLM 438

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 115/253 (45%), Positives = 149/253 (58%)

Query:    24 YSTIAWAGSLSHGRIENVS-YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82
             YS IA   S++ G     S Y  +  + A  +F  FN +G I+FAFAGH+V LEIQATIP
Sbjct:   196 YSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIP 255

Query:    83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAAN 142
             STPE PSK  MWKG + AY +  ICY  VA+ GYWAFG  V+D+VL++L+RP WLIAAAN
Sbjct:   256 STPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAAN 315

Query:   143 LMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFVGVXXXXX 202
              MV +HVIGSYQVFAM VF  +E  ++K + F P                  V V     
Sbjct:   316 FMVFIHVIGSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFF 375

Query:   203 XXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFR 262
                            SYFLP I+WL++K+PKRFS  W  +W +I  G+ I + + IGG R
Sbjct:   376 GGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMR 435

Query:   263 NIVADASTYSFYT 275
             +I+  A TY  ++
Sbjct:   436 HIILSARTYKLFS 448

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 86/260 (33%), Positives = 134/260 (51%)

Query:    23 SYSTIAWAGSLSHGRIENVSYA-YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATI 81
             +YST+ W  S+S  R   +SY      S++  +F V NALG I+FAF GH + LEIQ+T+
Sbjct:   257 TYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHNLVLEIQSTM 316

Query:    82 PSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDN-VLMALKR------P 134
             PST + P+ + MW+GA  +YF+ A+C FP+++ G+WA+G  +    +L AL        P
Sbjct:   317 PSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSGGMLAALYAFHIHDIP 376

Query:   135 GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLF 194
               L+A A L+VV   + S+Q+++MP F   E     R N P                + F
Sbjct:   377 RGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFVSFF 436

Query:   195 VGVXXXXXXXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIML 254
             +GV                    ++  P  MW++IKKP ++S  W  +W   ++GV   L
Sbjct:   437 IGVALPFLSSLAGLLGGLTLPV-TFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSL 495

Query:   255 ASTIGGFRNIVADASTYSFY 274
             A +IGG  ++V +     F+
Sbjct:   496 AFSIGGIWSMVTNGLKLKFF 515

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
 Identities = 49/147 (33%), Positives = 80/147 (54%)

Query:    31 GSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 90
             GSL+   +  V+ +   TSS   ++R F +LG I+FA++   + +EIQ T+ S P + + 
Sbjct:   217 GSLTGVTVGTVTLSGTVTSSQK-IWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNT 275

Query:    91 ILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLM--ALKRPGWLIAAANLMVVVH 148
               M K    +  V  + Y     +GY AFG +   N+L     + P WL+  ANL +V+H
Sbjct:   276 --MRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIH 333

Query:   149 VIGSYQVFAMPVFHLLEGMMIKRMNFP 175
             ++G+YQV+  P+F  +E    +R  FP
Sbjct:   334 LVGAYQVYCQPLFAFVEKEASRR--FP 358

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6M2	LHTL6_ARATH	No assigned EC number	0.7205	0.9854	0.6159	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrLHT3 lysine/histidine transporter (423 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-46
PLN03074	473	PLN03074, PLN03074, auxin influx permease; Provisi	1e-14
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	2e-04

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  159 bits (405), Expect = 2e-46
 Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 24  YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 83
           Y  I        G +           +   + R+F A+G I FAF GHAV L IQ T+ S
Sbjct: 162 YIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS 221

Query: 84  TPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANL 143
            P K     M K  L A  +  + Y  V L+GY AFG +V  N+L+ L +  WLI  ANL
Sbjct: 222 -PSKFKA--MTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANL 278

Query: 144 MVVVHVIGSYQVFAMPVFHLLEGMMIKR----MNFPPGAAVRVVARSAYVAFTLFVGVTF 199
           ++V+H++ SY + A P+  ++E ++ ++     + P    +RVV RS  V  T  + ++ 
Sbjct: 279 LLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISV 338

Query: 200 PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIML 254
           PF GD L   G     P ++ LP +  L +KK K+ S +      I++   I IG+ +M 
Sbjct: 339 PFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMA 398

Query: 255 ASTIGGFR 262
               G   
Sbjct: 399 YGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 68/257 (26%), Positives = 103/257 (40%), Gaps = 45/257 (17%)

Query: 24  YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 83
           Y TIA   +LSHG++E V    KH+     +   F     I + F GHAV +EI      
Sbjct: 210 YMTIA---ALSHGQVEGV----KHSGPTK-LVLYFTGATNILYTFGGHAVTVEIMHA--- 258

Query: 84  TPEKPSKILMWKGALGAYFVNAICYF------PVALIGYWAFGQD--VDDNVLMALKRPG 135
                    MWK     Y   A   +      P A   YWAFG +     N    L R G
Sbjct: 259 ---------MWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG 309

Query: 136 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFV 195
           W  AA  LM++ H   ++     P++ + E  +   ++      +R +AR   V    F+
Sbjct: 310 WRDAAVILMLI-HQFITFGFACTPLYFVWEKAI--GVHDTKSICLRALARLPVVVPIWFL 366

Query: 196 GVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLV-----------IKKPKRFSPKWIINWA 244
            + FPFFG +    G    + T Y +PS+  ++            +KP  F P W     
Sbjct: 367 AIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSW---TG 423

Query: 245 SIFIGVFIMLASTIGGF 261
              +  F+++   + GF
Sbjct: 424 MYVVNAFVVVWVLVVGF 440

Length = 473

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 48  TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAIC 107
           ++S  +   +  A+    F+F  H     +   +     K SK  + K  L    +  + 
Sbjct: 186 SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVL 241

Query: 108 YFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVI-------------GSYQ 154
           Y  V    +  FG  V  N+L A ++   L++A   ++   ++              S+ 
Sbjct: 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301

Query: 155 VFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF----PFFGDLLGFFG 210
              + +F  L  +  K  + P      ++     + F L     F     + G L+   G
Sbjct: 302 GVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIG 361

Query: 211 GFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLAS 256
                   +  P  +   +   K +   +++    +  G+ ++L+ 
Sbjct: 362 APIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSP 407

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.97
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.71
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.24
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.08
PRK10483	414	tryptophan permease; Provisional	98.8
PRK15132	403	tyrosine transporter TyrP; Provisional	98.78
PRK09664	415	tryptophan permease TnaB; Provisional	98.75
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.53
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.5
PRK11021	410	putative transporter; Provisional	98.07
PRK10644	445	arginine:agmatin antiporter; Provisional	97.85
PRK10746	461	putative transport protein YifK; Provisional	97.79
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.77
PRK10655	438	potE putrescine transporter; Provisional	97.77
TIGR00909	429	2A0306 amino acid transporter.	97.74
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.7
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.68
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.66
PRK10238	456	aromatic amino acid transporter; Provisional	97.57
PRK10249	458	phenylalanine transporter; Provisional	97.56
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.52
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.51
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.5
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.45
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.39
PRK10836	489	lysine transporter; Provisional	97.37
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.35
PRK11387	471	S-methylmethionine transporter; Provisional	97.35
TIGR00913	478	2A0310 amino acid permease (yeast).	97.31
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.24
PRK15049	499	L-asparagine permease; Provisional	97.16
TIGR00911	501	2A0308 L-type amino acid transporter.	97.15
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.15
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.15
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.07
PRK10580	457	proY putative proline-specific permease; Provision	96.96
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.86
PRK15238	496	inner membrane transporter YjeM; Provisional	96.65
TIGR00930	953	2a30 K-Cl cotransporter.	96.62
TIGR00912	359	2A0309 spore germination protein (amino acid perme	96.05
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	95.99
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	95.02
KOG1286	554	consensus Amino acid transporters [Amino acid tran	94.31
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	94.25
COG1457	442	CodB Purine-cytosine permease and related proteins	93.48
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	91.99
PF03845	320	Spore_permease: Spore germination protein; InterPr	91.52
COG0833	541	LysP Amino acid transporters [Amino acid transport	90.56
PRK11375	484	allantoin permease; Provisional	83.21
KOG1289	550	consensus Amino acid transporters [Amino acid tran	82.96

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-39  Score=290.47  Aligned_cols=252  Identities=18%  Similarity=0.229  Sum_probs=215.2

Q ss_pred             ccchhhhhHHHHHHHH-HHHHHHHHHHHhhcccccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCCcC
Q 023925            6 HQYIDALMLHNYCSGR-CSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST   84 (275)
Q Consensus         6 ~~~l~~L~~ls~~S~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~   84 (275)
                      ..++|+||+|+.+|+. -++..+++++..++...+..+.  ++...-.++.+++..+|+.+|||++++++.|++++    
T Consensus       193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~--~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~----  266 (449)
T KOG1304|consen  193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPT--SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS----  266 (449)
T ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCc--cccccccchhhhHHHHHHHHHHhccceEEEehhhc----
Confidence            4689999999999963 3444444444333322221111  11222345899999999999999999999999997    


Q ss_pred             CCCCccccc-hhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH
Q 023925           85 PEKPSKILM-WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL  163 (275)
Q Consensus        85 m~~p~~~~~-~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~  163 (275)
                      ||+|+++.- .+++..++.+++++|+.+|.+||++|||++++.|+.|+|+ +|..+.+++++++.+..+||+|++|+.++
T Consensus       267 Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI  345 (449)
T KOG1304|consen  267 MKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEI  345 (449)
T ss_pred             ccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence            999987642 2789999999999999999999999999999999999998 89999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC---CChHHH
Q 023925          164 LEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWI  240 (275)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~---~~~~~~  240 (275)
                      +|+.+.++.+.+++++....+|+.+++++..+|..+|+++++++++||++++.+++++|++++++.++++.   ..|+++
T Consensus       346 i~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~  425 (449)
T KOG1304|consen  346 IEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLI  425 (449)
T ss_pred             HHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHH
Confidence            99998777665556677889999999999999999999999999999999999999999999999987654   467889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 023925          241 INWASIFIGVFIMLASTIGGFRNI  264 (275)
Q Consensus       241 ~~~~~i~~g~~~~v~gt~~si~~i  264 (275)
                      .|.+++++|++.++.|||+|+.++
T Consensus       426 ~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  426 KNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999999874

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=9.6e-38  Score=291.95  Aligned_cols=206  Identities=19%  Similarity=0.227  Sum_probs=182.1

Q ss_pred             hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCC-CC
Q 023925           55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL-KR  133 (275)
Q Consensus        55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~  133 (275)
                      .+.+.++|+++|||.||.+.+|+++|    ||||+.+++.+++..++.+++++|..+|++||++||+++++|++.|+ |.
T Consensus       256 ~~~~~algi~~faF~~h~~~~~i~~~----M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~  331 (467)
T PTZ00206        256 NRAIEGLGVFIFAYVFQITAYEVYMD----MTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV  331 (467)
T ss_pred             hHHHhhhhHHHhhhhhhhhhHHHHHh----hcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC
Confidence            46889999999999999999999997    89999899889999999999999999999999999999999999999 55


Q ss_pred             ChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhh
Q 023925          134 PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFG  213 (275)
Q Consensus       134 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~  213 (275)
                      ++....++++++.+.++.+||++.+|+|+.+++.+..+.+ +.+.+++...+..+++++.++|+.+|+++.+++++||++
T Consensus       332 ~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~  410 (467)
T PTZ00206        332 NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSIS  410 (467)
T ss_pred             CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHH
Confidence            6677778899999999999999999999999998743322 234466666777778888999999999999999999999


Q ss_pred             hhhhHhhhhhHHHHHH---hCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925          214 FTPTSYFLPSIMWLVI---KKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIV  265 (275)
Q Consensus       214 ~~~l~filP~l~yl~~---~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii  265 (275)
                      ++.++|++|+++|++.   ++++..+++|+.+++++++|++..+.|||+|+++.+
T Consensus       411 ~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        411 GGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999984   233344556788999999999999999999999876

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-36  Score=276.57  Aligned_cols=254  Identities=41%  Similarity=0.776  Sum_probs=215.5

Q ss_pred             CCccchhhhhHHHHHH--HHHHHHHHHHHHHhhcccccC-cccccccCCCcchHhHH-HHHHHHHHHHhhCCccccchhc
Q 023925            4 PEHQYIDALMLHNYCS--GRCSYSTIAWAGSLSHGRIEN-VSYAYKHTSSADYMFRV-FNALGQISFAFAGHAVALEIQA   79 (275)
Q Consensus         4 ~~~~~l~~L~~ls~~S--~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~a~~~~~faf~~~~~~~~i~~   79 (275)
                      ++.+.+++++++|..+  ++..|+.+++.+++.++.... ++.+..+.    +.... ++++|++.|+|++|.++||||+
T Consensus       177 s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~----~~~~~~f~a~g~iaFaf~gH~v~peIq~  252 (437)
T KOG1303|consen  177 SQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL----GTIPTVFTALGIIAFAYGGHAVLPEIQH  252 (437)
T ss_pred             HHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC----CCCcchhhhhhheeeeecCCeeeeehHh
Confidence            3444555555555555  356677777788887776552 22222111    11111 8999999999999999999999


Q ss_pred             cCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhc
Q 023925           80 TIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMP  159 (275)
Q Consensus        80 ~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p  159 (275)
                      +    ||+|++  |+|++..++.+++.+|+.+++.||++|||+++++++.|++++.|....+++++.+|++.+|.+...|
T Consensus       253 t----Mk~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~p  326 (437)
T KOG1303|consen  253 T----MKSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQP  326 (437)
T ss_pred             h----cCCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcc
Confidence            6    899987  5699999999999999999999999999999999999997677899999999999999999999999


Q ss_pred             HHHHHHHHhhhccC-CC-CCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCCh
Q 023925          160 VFHLLEGMMIKRMN-FP-PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP  237 (275)
Q Consensus       160 ~~~~l~~~~~~~~~-~~-~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~  237 (275)
                      +.+.+|++...+.+ .+ +....|...|+.++..++++|+.+|+|+++++++||+...++++++|+++|++.+|.++...
T Consensus       327 l~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~  406 (437)
T KOG1303|consen  327 LFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSP  406 (437)
T ss_pred             hHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            99999999976544 12 35568999999999999999999999999999999999999999999999999999999889


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 023925          238 KWIINWAS-IFIGVFIMLASTIGGFRNIVAD  267 (275)
Q Consensus       238 ~~~~~~~~-i~~g~~~~v~gt~~si~~ii~~  267 (275)
                      +|+.++.+ +++|+++++....++++.++.+
T Consensus       407 ~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  407 KWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999 8999999999999999988753

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=3e-36  Score=281.35  Aligned_cols=216  Identities=24%  Similarity=0.380  Sum_probs=186.4

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch--hHh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD--NVL  128 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~--~il  128 (275)
                      +.+...++.++++++|+|++|.++||+++|    ||||++++  ++...+....++.|..+|+.||+.|||++++  +.+
T Consensus       229 ~~~~~~~f~~~~~i~faf~g~~v~~~I~~~----M~~P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l  302 (473)
T PLN03074        229 PTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWKPQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAF  302 (473)
T ss_pred             chhHHHHHHHHHHHHHHhcccccHHHHHHh----ccChhccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHH
Confidence            456778889999999999999999999997    99999887  8888899999999999999999999999764  567


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhh
Q 023925          129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGF  208 (275)
Q Consensus       129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l  208 (275)
                      .|+|.+.+ ..+++++++++++.+||++++|+.+.+|+....+  ..+....|+..|+.+++.++++|+.+|+|+++++|
T Consensus       303 ~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsL  379 (473)
T PLN03074        303 SLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSA  379 (473)
T ss_pred             hcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            78886655 4689999999999999999999999999987542  23345678899999999999999999999999999


Q ss_pred             hhhhhhhhhHhhhhhHHHHHHhCCC-------------CCChH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccc
Q 023925          209 FGGFGFTPTSYFLPSIMWLVIKKPK-------------RFSPK--WIINWASIFI-GVFIMLASTIGGFRNIVADASTYS  272 (275)
Q Consensus       209 ~Ga~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~~i~~-g~~~~v~gt~~si~~ii~~~~~~~  272 (275)
                      +||++++.+++++|+++|++.++++             ..+|.  .+.|++++++ |++..+.|||+|++++++++++|+
T Consensus       380 vGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~  459 (473)
T PLN03074        380 VGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFG  459 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhh
Confidence            9999999999999999999876542             11232  3889999975 555578999999999999999999


Q ss_pred             CCC
Q 023925          273 FYT  275 (275)
Q Consensus       273 ~f~  275 (275)
                      .|+
T Consensus       460 ~f~  462 (473)
T PLN03074        460 LFA  462 (473)
T ss_pred             hhh
Confidence            874

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.3e-36  Score=280.09  Aligned_cols=209  Identities=31%  Similarity=0.496  Sum_probs=188.9

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCcc-ccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHh
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVL  128 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~-~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il  128 (275)
                      +..++.+++.++|+++|||.||+++|++++|    ||+|++ ++++++...++.+++++|..+|..||++||+++++|++
T Consensus       187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il  262 (409)
T PF01490_consen  187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSE----MKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNIL  262 (409)
T ss_pred             ccchhhHHHHhhhhhhhhhhcccccceeeee----ccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhh
Confidence            3567789999999999999999999999997    899998 67889999999999999999999999999999999999


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhc--------cCCCCCcceeehhhHHHHHHHHHHHhhcC
Q 023925          129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFP  200 (275)
Q Consensus       129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~--------~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp  200 (275)
                      .|++++++...++++++.++++.+||++.+|.++.+|+.+.++        .+.+.++++|...|+.++.+++++|+.+|
T Consensus       263 ~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp  342 (409)
T PF01490_consen  263 LNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVP  342 (409)
T ss_pred             hcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhcc
Confidence            9999887788899999999999999999999999999999763        12334568899999999999999999999


Q ss_pred             ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 023925          201 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIMLASTIGGFR  262 (275)
Q Consensus       201 ~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~-----~~~~~~i~~g~~~~v~gt~~si~  262 (275)
                      +++++++++||++++.++|++|+++|+|.+++++.+.++     ..++..+++|++.++.|||++++
T Consensus       343 ~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  409 (409)
T PF01490_consen  343 NFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ  409 (409)
T ss_pred             chhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence            999999999999999999999999999998877644333     44788999999999999998863

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.97  E-value=5.7e-31  Score=240.28  Aligned_cols=253  Identities=19%  Similarity=0.258  Sum_probs=207.0

Q ss_pred             ccchhhhhHHHHHHHH-HHHHHHHHHH-Hhhccc-ccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCC
Q 023925            6 HQYIDALMLHNYCSGR-CSYSTIAWAG-SLSHGR-IENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP   82 (275)
Q Consensus         6 ~~~l~~L~~ls~~S~~-~~~~~i~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~   82 (275)
                      ++.+++||+.|.+|.. .++..+.++. ...... .++..+.   ......+.+.+.++|+++|||.||+|+.++++|  
T Consensus       145 ~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E--  219 (411)
T KOG1305|consen  145 LKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE--  219 (411)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeee--
Confidence            4456777777777753 3333333222 222111 0111111   112223378999999999999999999999997  


Q ss_pred             cCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHH------HHHHHHHHHHHHHHhhhhh
Q 023925           83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL------IAAANLMVVVHVIGSYQVF  156 (275)
Q Consensus        83 ~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~i~~~~~~i~~~~s~pl~  156 (275)
                        ||||+++++.++...+...++++|..+|.+||++|||++++|++.++++.+-.      ...++..+.++.+..+|+.
T Consensus       220 --l~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~  297 (411)
T KOG1305|consen  220 --LKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIV  297 (411)
T ss_pred             --eeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence              89999999999999999999999999999999999999999999999854322      3578999999999999999


Q ss_pred             hhcHHHHHHHHhhhccC--CCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC
Q 023925          157 AMPVFHLLEGMMIKRMN--FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR  234 (275)
Q Consensus       157 ~~p~~~~l~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~  234 (275)
                      .+|+|..+++.+.++..  .+.++.++..++..++..+.+.|+.+|+++++++++||+++..++|++|+++|++..|+  
T Consensus       298 ~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--  375 (411)
T KOG1305|consen  298 LFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--  375 (411)
T ss_pred             hchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--
Confidence            99999999999877643  23566788999999999999999999999999999999999999999999999999887  


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023925          235 FSPKWIINWASIFIGVFIMLASTIGGFRNIVAD  267 (275)
Q Consensus       235 ~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii~~  267 (275)
                      +++++...+...++|+...+.|++..+.++..+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  376 KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556778889999999999999999999998765

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-32  Score=235.89  Aligned_cols=262  Identities=16%  Similarity=0.223  Sum_probs=220.6

Q ss_pred             CccchhhhhHHHHHHHHHHHHHHHH-HHHhhcccccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCCc
Q 023925            5 EHQYIDALMLHNYCSGRCSYSTIAW-AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS   83 (275)
Q Consensus         5 ~~~~l~~L~~ls~~S~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~   83 (275)
                      +-.++||||.+|.+|..++.+=+++ .+.+.+..+...|+++...+..-+..+++.++|+++|+|+.|..+|+++.+   
T Consensus       251 pc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN---  327 (524)
T KOG4303|consen  251 PCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN---  327 (524)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc---
Confidence            4468999999999998776652222 223323223334555544445667788899999999999999999999996   


Q ss_pred             CCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH
Q 023925           84 TPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL  163 (275)
Q Consensus        84 ~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~  163 (275)
                       |+||++++  ..+.|+-+...++-..+|..||++|||+++..|++|+|.... ..++++...+..+.+||+-++.+.+.
T Consensus       328 -M~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvel  403 (524)
T KOG4303|consen  328 -MKNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVEL  403 (524)
T ss_pred             -cCChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHH
Confidence             99999998  788899999999999999999999999999999999997554 45899999999999999999999999


Q ss_pred             HHHHhhhccC---CC-------CCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925          164 LEGMMIKRMN---FP-------PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK  233 (275)
Q Consensus       164 l~~~~~~~~~---~~-------~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~  233 (275)
                      +|+-++.+.+   ++       +-+-..+.+|..+++.+.+.|+.+|+|..+++++|+++++.++|+.|++||++++++.
T Consensus       404 Le~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~  483 (524)
T KOG4303|consen  404 LENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT  483 (524)
T ss_pred             HHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence            9988876432   11       1123346889999999999999999999999999999999999999999999999887


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 023925          234 RFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF  273 (275)
Q Consensus       234 ~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii~~~~~~~~  273 (275)
                      ....|+..++.+++.|..++|.|.|.|..++++++++...
T Consensus       484 L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~  523 (524)
T KOG4303|consen  484 LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS  523 (524)
T ss_pred             hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence            7777888999999999999999999999999999987644

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.71  E-value=4.1e-16  Score=144.00  Aligned_cols=206  Identities=16%  Similarity=0.204  Sum_probs=155.1

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhC
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMA  130 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~  130 (275)
                      +..+.+...++|++.|||+||+++|++++|    ||++++++.+|+...+..+..++|..++.++|..+|+++.+|++++
T Consensus       189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~----~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~  264 (415)
T COG0814         189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNY----MRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA  264 (415)
T ss_pred             hhhHHHHHHHhhHHHhhhhCCccchHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHc
Confidence            467888999999999999999999999998    7888776677999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH--------------HHHHhhhccCC--CCCcc--eeehhhHHHHHHH
Q 023925          131 LKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL--------------LEGMMIKRMNF--PPGAA--VRVVARSAYVAFT  192 (275)
Q Consensus       131 ~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~--------------l~~~~~~~~~~--~~~~~--~~~~~r~~~~~~~  192 (275)
                      .++++... ........+...++|.+.++....              .++.+.++++.  ++..+  .........+...
T Consensus       265 ~~~~~~~l-~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~  343 (415)
T COG0814         265 KEQNISLL-SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYP  343 (415)
T ss_pred             cCchHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence            97654433 344444445556667666665533              33333321111  11112  2234455555666


Q ss_pred             HHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925          193 LFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGF  261 (275)
Q Consensus       193 ~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si  261 (275)
                      ..++...|..+.+++.+|+.....+.++.|...+.|....++.+.++...++++++|+..++...++..
T Consensus       344 ~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         344 WGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            678889999999999999999999999999998888866555444335678899999988887666543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.24  E-value=5.3e-10  Score=102.45  Aligned_cols=171  Identities=14%  Similarity=0.090  Sum_probs=129.5

Q ss_pred             chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc-------
Q 023925           52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD-------  124 (275)
Q Consensus        52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~-------  124 (275)
                      .++.+...+++...++|++|.+++++.++    ++|+ +|+.+|+...+..+++++|...........+.+.-       
T Consensus       175 ~~~~~~~~a~~~~~~~fg~~~~i~~~~~~----~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~  249 (381)
T TIGR00837       175 SYWPYILSALPVCLTSFGFHGNVPSLYKY----YDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKG  249 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHcccccHHHHHH----hccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence            46778889999999999999999999886    6655 56778999999999999999887655544433211       


Q ss_pred             ---hh---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh
Q 023925          125 ---DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT  198 (275)
Q Consensus       125 ---~~---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~  198 (275)
                         ++   ...+.-.+.+...+....-.+.+..++.-.....+|.+.+.+.++++    +.+|.....+..+...++|..
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~a~~  325 (381)
T TIGR00837       250 GNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLPPLVFALF  325 (381)
T ss_pred             CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHhHHHHHHH
Confidence               11   11111123345556777778889999999999999998888865322    223555667777888899999


Q ss_pred             cCChh-hHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925          199 FPFFG-DLLGFFGGFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       199 vp~~~-~v~~l~Ga~~~~~l~filP~l~yl~~~~~  232 (275)
                      .|+.. ..++..| +.+..+.+++|+++++|.||+
T Consensus       326 ~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       326 YPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99776 8999999 888999999999999998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.08  E-value=2.5e-08  Score=91.76  Aligned_cols=195  Identities=18%  Similarity=0.266  Sum_probs=137.8

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh--HHH---------HH
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL--IGY---------WA  118 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~--~gy---------~~  118 (275)
                      .+.++...+.++|+..++|+.|.++|++.+.++   +|+  ++.+|++..+..+..++|+..-.  .|-         ..
T Consensus       179 ~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~--~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~  253 (394)
T PF03222_consen  179 SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDP--KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIA  253 (394)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            357889999999999999999999999999752   233  34458888888888888876532  221         11


Q ss_pred             cCCCCch--hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHH
Q 023925          119 FGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVG  196 (275)
Q Consensus       119 fG~~~~~--~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A  196 (275)
                      -|+++.+  ..+.+..++.+......+.-.+.+.+||--...-++|.+++.+..++    +...|........+..+++|
T Consensus       254 ~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~a  329 (394)
T PF03222_consen  254 QGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLPPLIFA  329 (394)
T ss_pred             cCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHhHHHHH
Confidence            1222222  22333334445566778888889999999889999999999885521    22344455566667778889


Q ss_pred             hhcC-ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCC-----hHHHHHHHHHHHHHHHHH
Q 023925          197 VTFP-FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS-----PKWIINWASIFIGVFIML  254 (275)
Q Consensus       197 i~vp-~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~-----~~~~~~~~~i~~g~~~~v  254 (275)
                      ...| .|-..+++.| .....+..++|+++.+|.|++++..     ..+....+++++|++..+
T Consensus       330 ~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~iii  392 (394)
T PF03222_consen  330 LLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILIII  392 (394)
T ss_pred             HHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHHH
Confidence            9998 6778999999 8899999999999999998765432     234555566666665543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.80  E-value=1e-06  Score=81.11  Aligned_cols=192  Identities=16%  Similarity=0.075  Sum_probs=132.2

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH-----------HcCC
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW-----------AFGQ  121 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~-----------~fG~  121 (275)
                      .+.....++|++.++|+.|.++|++.+.++   +|++  +.+|++..+..+..++|+.-=...-.           .-|+
T Consensus       190 ~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~  264 (414)
T PRK10483        190 YAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGG  264 (414)
T ss_pred             hHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence            355688999999999999999999999742   2333  55699999999999998873222221           1233


Q ss_pred             CCchhHhhCC---CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh
Q 023925          122 DVDDNVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT  198 (275)
Q Consensus       122 ~~~~~il~~~---~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~  198 (275)
                      +++ ..+..+   .++.+...+......+.+..||--....+.|.+++.+..+++    ...|...-.+..+...++|..
T Consensus       265 ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~  339 (414)
T PRK10483        265 NID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLL  339 (414)
T ss_pred             ChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHH
Confidence            332 111222   223344456667777888999998889999999998865432    234555556777888899999


Q ss_pred             cCC-hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC-CCCCh----HHHHHHHHHHHHHHHHHH
Q 023925          199 FPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSP----KWIINWASIFIGVFIMLA  255 (275)
Q Consensus       199 vp~-~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~-~~~~~----~~~~~~~~i~~g~~~~v~  255 (275)
                      .|+ |-..++..|.. +..+.-++|+++-+|.||+ +...+    .+....+.+.+|+...+.
T Consensus       340 ~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~  401 (414)
T PRK10483        340 FPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALV  401 (414)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHH
Confidence            995 77899999977 6677789999999999875 22211    233335666666665554

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.78  E-value=5.5e-07  Score=82.93  Aligned_cols=190  Identities=15%  Similarity=0.128  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC----------ch
Q 023925           56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----------DD  125 (275)
Q Consensus        56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~----------~~  125 (275)
                      -...++|++.++|+.|.++|++.+.+    + .+.++.+|++..+..+..++|+.-=......-+.+.          -+
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~----~-~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~  256 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYM----G-GNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN  256 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHh----C-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence            48899999999999999999999973    3 233455689998888888888765544443322211          11


Q ss_pred             hHhhCC---CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcC-C
Q 023925          126 NVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP-F  201 (275)
Q Consensus       126 ~il~~~---~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp-~  201 (275)
                      ++++.+   .++.+...+......+.+..||--....+.|.+.+.+.++.+    ...|........+..+++|...| -
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~  332 (403)
T PRK15132        257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRG  332 (403)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHH
Confidence            223322   223455556777777888999998889999999998865322    23366667788888899999999 6


Q ss_pred             hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC---CCC--hHHHHHHHHHHHHHHHHHH
Q 023925          202 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK---RFS--PKWIINWASIFIGVFIMLA  255 (275)
Q Consensus       202 ~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~---~~~--~~~~~~~~~i~~g~~~~v~  255 (275)
                      |....++.|.. ...+.+++|+++-+|.++++   +.+  ..+..+++.+.+|++..+.
T Consensus       333 F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        333 FVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence            77889998875 68899999999999998654   221  1456677788888777664

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.75  E-value=1.9e-06  Score=79.35  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=131.8

Q ss_pred             HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhh--hhHH---------HHHcCCC
Q 023925           54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIG---------YWAFGQD  122 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~--g~~g---------y~~fG~~  122 (275)
                      +.....++|++.++|+.|+++|++.+.++   +|+++.  +|++.....+..++|..-  ...|         -..-|++
T Consensus       192 ~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~--~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~n  266 (415)
T PRK09664        192 FPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKL--IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGN  266 (415)
T ss_pred             HHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence            34577899999999999999999999742   344333  377777777777777432  1222         1223334


Q ss_pred             CchhHhh--CCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcC
Q 023925          123 VDDNVLM--ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP  200 (275)
Q Consensus       123 ~~~~il~--~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp  200 (275)
                      +++-+..  +-..+.+......+...+.+..||--....+.|.+.+.+..+++    ...|...-.+..+...++|...|
T Consensus       267 v~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~ltflPPl~~al~~P  342 (415)
T PRK09664        267 VDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLTFLPPALLYLIFP  342 (415)
T ss_pred             chHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhhHHHHHHhh
Confidence            4332211  11234455666777778889999998889999999998855422    23455555677788889999999


Q ss_pred             C-hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC-CCCC----hHHHHHHHHHHHHHHHHHH
Q 023925          201 F-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFS----PKWIINWASIFIGVFIMLA  255 (275)
Q Consensus       201 ~-~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~-~~~~----~~~~~~~~~i~~g~~~~v~  255 (275)
                      + |=..++..|.. +..+.-++|+++-+|.||+ +...    ..+..-.+.+.+|++..+.
T Consensus       343 ~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~  402 (415)
T PRK09664        343 NGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC  402 (415)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence            5 77899999996 5688889999999999975 2211    2345556666777766654

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.53  E-value=3.9e-06  Score=77.58  Aligned_cols=203  Identities=14%  Similarity=0.107  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHHhhCCccccchhccCCcCCC---CCc--cccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC------
Q 023925           55 FRVFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDV------  123 (275)
Q Consensus        55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~---~p~--~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~------  123 (275)
                      .....++|++.++|..|+.+|++....|.+.+   +++  +++.+|++..+..+..++|+..-..+-..-+++-      
T Consensus       209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~  288 (443)
T PRK13629        209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA  288 (443)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            45789999999999999999999887443332   233  4566788999999888888877666555544321      


Q ss_pred             -chhHh----hCCCC---C-----hHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhh---ccCC--CCCcceeehhh
Q 023925          124 -DDNVL----MALKR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK---RMNF--PPGAAVRVVAR  185 (275)
Q Consensus       124 -~~~il----~~~~~---~-----~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~---~~~~--~~~~~~~~~~r  185 (275)
                       +.+++    +.++.   .     .+......+.-.+.+..||--....++|.++.+..+   +.+.  ..++..+....
T Consensus       289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~  368 (443)
T PRK13629        289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISM  368 (443)
T ss_pred             hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHH
Confidence             11211    22222   1     223344555556788888888888999999988853   1111  12223355677


Q ss_pred             HHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 023925          186 SAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTI  258 (275)
Q Consensus       186 ~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~  258 (275)
                      ..+.+.++++|..-|++=++++-+|+---..+.|++|...-.|...-++.+.+ ..|+++++.|++......|
T Consensus       369 ~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        369 IFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHHHHHHHHH
Confidence            78888999999999998888886666666778899999887777543333322 3578888888877654443

>TIGR00814 stp serine transporter

Probab=98.50  E-value=8.3e-07  Score=81.76  Aligned_cols=196  Identities=12%  Similarity=0.152  Sum_probs=130.1

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCc--cccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc-----h
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD-----D  125 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~--~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~-----~  125 (275)
                      .+.+...++++..+||.+|+.+|++..+.|.+.+||+  ++|.+|+...+..+..++|+..-..+-...+.+.-     +
T Consensus       184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~  263 (397)
T TIGR00814       184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ  263 (397)
T ss_pred             hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence            4678999999999999999999999733222234333  45556888899998888888777766666554321     1


Q ss_pred             --hHhh----CCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC---C-CCCcceeehhhHHHHHHHHHH
Q 023925          126 --NVLM----ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN---F-PPGAAVRVVARSAYVAFTLFV  195 (275)
Q Consensus       126 --~il~----~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~---~-~~~~~~~~~~r~~~~~~~~~~  195 (275)
                        +.+.    ..+ +.+...+....-.+.+..||--....++|.+++.+.+..+   + ..++..+......+.+.++.+
T Consensus       264 nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  342 (397)
T TIGR00814       264 NISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIV  342 (397)
T ss_pred             CcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHH
Confidence              1122    122 2233344555566788888888888999999998842211   1 112233446677788889999


Q ss_pred             HhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 023925          196 GVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGV  250 (275)
Q Consensus       196 Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~  250 (275)
                      |..-|++=++++-+|+---..+.|++|...-.|...-++.+.+ ..++++++.|+
T Consensus       343 ~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~fv~~~g~  396 (397)
T TIGR00814       343 AYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVFVTVIGL  396 (397)
T ss_pred             HHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchheeEeeec
Confidence            9999998888886666666678889999887777443333222 24666655553

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11021 putative transporter; Provisional

Probab=98.07  E-value=0.0017  Score=60.19  Aligned_cols=175  Identities=13%  Similarity=0.203  Sum_probs=96.5

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH--HHHHcCCCCc--h-
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI--GYWAFGQDVD--D-  125 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~--gy~~fG~~~~--~-  125 (275)
                      +.++.++..++....|+|.+.......-+|    +|||+| +.+|++..+..++.++|......  +...++|..+  + 
T Consensus       173 ~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~k-~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~  247 (410)
T PRK11021        173 SIEWSGLFAALGVMFWCFVGIEAFAHLASE----FKNPER-DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAAS  247 (410)
T ss_pred             CccHHHHHHHHHHHHHHHhcHHHHHhhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcccc
Confidence            356788999999999999999999999997    899985 67899999999999999988754  2222333211  1 


Q ss_pred             --hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925          126 --NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV  195 (275)
Q Consensus       126 --~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~  195 (275)
                        .+.+..- +.+...+..+...+..+.+.........+.+..+-+++.      + .+++.+.+.. +...+..+..++
T Consensus       248 ~~~~~~~~~-G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~  326 (410)
T PRK11021        248 LPGIFVQLF-GGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILL  326 (410)
T ss_pred             HHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence              1121111 111222333333444444443333333344333332110      0 0111122211 111111111112


Q ss_pred             Hh-hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925          196 GV-TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK  233 (275)
Q Consensus       196 Ai-~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~  233 (275)
                      .. .-.+++++.++..  ....+.|.++.+..+|+++++
T Consensus       327 ~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~  363 (410)
T PRK11021        327 IYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR  363 (410)
T ss_pred             HHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence            11 2357777777644  335688888888888887643

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.85  E-value=0.0034  Score=58.80  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG  115 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g  115 (275)
                      ++.++..++....|+|.|-......-+|    +|||+| +.+|++..+..+..++|.+.....
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        189 TFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHH----hhCccc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777888899999999999888886    899976 578999999999999999887753

>PRK10746 putative transport protein YifK; Provisional

Probab=97.79  E-value=0.0051  Score=57.96  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=100.5

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-Cc---hh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD---DN  126 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~~---~~  126 (275)
                      +.++.++..++....|+|.+-......-+|    +|||+| +++|++..+.....++|.......-.....+ ..   ++
T Consensus       196 ~~g~~g~~~~~~~~~faf~G~e~v~~~a~E----~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp  270 (461)
T PRK10746        196 AGGWKGFLTALCIVVASYQGVELIGITAGE----AKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSP  270 (461)
T ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCc
Confidence            446788999999999999999988888886    899975 6789988888888888887654433333221 11   11


Q ss_pred             H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C------CCCCcceeeh-hhHHHHHHHHHH
Q 023925          127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N------FPPGAAVRVV-ARSAYVAFTLFV  195 (275)
Q Consensus       127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~------~~~~~~~~~~-~r~~~~~~~~~~  195 (275)
                      .   ..+...+ ....+.+....+..+.+..-..+...+.+..+-..+. +      .++..+.+.. +......+...+
T Consensus       271 ~v~~~~~~g~~-~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~  349 (461)
T PRK10746        271 FVLTFAKIGIT-AAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCL  349 (461)
T ss_pred             HHHHHHHhCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence            1   1222211 2233455555566666655555656666555543221 0      0111121211 111111222223


Q ss_pred             HhhcCChhhHHhhhhhhhh--hhhHhhhhhHHHHHHhCC
Q 023925          196 GVTFPFFGDLLGFFGGFGF--TPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       196 Ai~vp~~~~v~~l~Ga~~~--~~l~filP~l~yl~~~~~  232 (275)
                      ....|+-+.+++.+-+.++  ..+.++++++.|++.+|+
T Consensus       350 ~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~  388 (461)
T PRK10746        350 NYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA  388 (461)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345655665555444333  367899999999998764

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.77  E-value=0.003  Score=59.02  Aligned_cols=175  Identities=15%  Similarity=0.128  Sum_probs=112.5

Q ss_pred             chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCC
Q 023925           52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL  131 (275)
Q Consensus        52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~  131 (275)
                      .+..++..++=.-.|||.+=.++=.+-+|    +|||+| ++++++.+++.+++++|+.+=+..+-+-   ..++++.+-
T Consensus       201 ~~~g~i~lafysglfa~~GWd~lN~vteE----iknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~  272 (479)
T KOG1287|consen  201 TDVGNIALAFYSGLFAFSGWDYLNYVTEE----IKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSD  272 (479)
T ss_pred             CchHHHHHHHHHhhhcccCchhhccchHh----hcCccc-cchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccc
Confidence            45566778888889999998888888886    799975 6899999999999999999866444221   223332221


Q ss_pred             ---------CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCC----Ccceeehh--hHHHHHHHHHHH
Q 023925          132 ---------KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP----GAAVRVVA--RSAYVAFTLFVG  196 (275)
Q Consensus       132 ---------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~----~~~~~~~~--r~~~~~~~~~~A  196 (275)
                               --+++. -.+-.+..++.+.+.--.++...+.+...-+++. .+.    ...++..-  .+.......++.
T Consensus       273 aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~-LP~~~s~i~~~~~TP~~allf~~~~~i~~  350 (479)
T KOG1287|consen  273 AVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGH-LPAFFSMISVRRFTPRPALLFSGLLSIVL  350 (479)
T ss_pred             hHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccC-ccHHHHhhcCCCCCChHHHHHHHHHHHHH
Confidence                     012233 2344555666666666555555555554444332 110    01112122  233334444555


Q ss_pred             hhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCC
Q 023925          197 VTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS  236 (275)
Q Consensus       197 i~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~  236 (275)
                      ....|++.+++..+=.......+.+=+++|+|.++++..+
T Consensus       351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r  390 (479)
T KOG1287|consen  351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR  390 (479)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            5667899999999888888888888999999999887544

>PRK10655 potE putrescine transporter; Provisional

Probab=97.77  E-value=0.013  Score=54.78  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925           54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY  116 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy  116 (275)
                      +.++..++....|+|.|-.....+-+|    +|||+| +.+|++..+..+..++|.+......
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDA----VENPER-NVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHH----hhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888999999999999988886    899976 5789999999999999988765443

>TIGR00909 2A0306 amino acid transporter

Probab=97.74  E-value=0.0064  Score=56.53  Aligned_cols=172  Identities=14%  Similarity=0.028  Sum_probs=98.1

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-C---ch-
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DD-  125 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~---~~-  125 (275)
                      +.+..++..++....++|.+........+|    +|||+| +.+|++..+..+..++|..........-+.+ .   ++ 
T Consensus       191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E----~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~  265 (429)
T TIGR00909       191 PMGFGGVGAATALVFFAFIGFEAISTAAEE----VKNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAP  265 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHhhHHHHHhhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcH
Confidence            445678889999999999999999998887    799864 5679999999999999998876544222111 0   11 


Q ss_pred             --hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCC-----CcceeehhhHHHHH-HHHHHHh
Q 023925          126 --NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP-----GAAVRVVARSAYVA-FTLFVGV  197 (275)
Q Consensus       126 --~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~-----~~~~~~~~r~~~~~-~~~~~Ai  197 (275)
                        .+..+.. .++...+..+...+..+.+.--......+.+..+-..+. .++     +...+.-.+..++. ....+..
T Consensus       266 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~-lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~  343 (429)
T TIGR00909       266 LSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGL-LPGSLSKVHPKTGTPHMSIIIFSLTAALLA  343 (429)
T ss_pred             HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CcHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence              1112222 234444566666677767666655555555554443221 110     00112222211111 1111122


Q ss_pred             hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          198 TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       198 ~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                      ...+++.+.++.+-  +..+.|++.++.+++.++
T Consensus       344 ~~~~~~~l~~~~~~--~~~~~y~~~~~a~~~lr~  375 (429)
T TIGR00909       344 SLVPLEGLAELTSI--GTLIAFAAVNVAVIILRR  375 (429)
T ss_pred             HHcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            34567777765432  335667777666666654

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.70  E-value=0.0048  Score=57.79  Aligned_cols=57  Identities=18%  Similarity=0.346  Sum_probs=49.2

Q ss_pred             HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925           54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG  115 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g  115 (275)
                      +.++..++....|+|.+-.....+-+|    +|||+| +.+|++..+..++.++|.......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGE----IKNPGK-TMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHH----hcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            567888899999999999999999887    899975 678999999999999998876543

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.68  E-value=0.0031  Score=58.46  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=101.4

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc---hhH
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---DNV  127 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~---~~i  127 (275)
                      +..+.+++.+++...|+|.+-......-+|    +||   |+.+|++..+..++.++|......-....+++..   ++.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~  256 (426)
T PF13520_consen  184 PSGWPGFLAGFSVAFFAFSGFEAIASLAEE----NKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNS  256 (426)
T ss_dssp             CSSSSHHHHHHHHHGGGGTTTTHHHHGGGG----SSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCH
T ss_pred             CccccchhhHHHHHHhhccccccccccccc----ccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhccccc
Confidence            345556889999999999999999999997    665   4677999999999999999987765555544211   111


Q ss_pred             -------hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--CCCCcceeehhhHHHH--HHHHHH
Q 023925          128 -------LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--FPPGAAVRVVARSAYV--AFTLFV  195 (275)
Q Consensus       128 -------l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~~~~~~~~~~~r~~~~--~~~~~~  195 (275)
                             .+... +.+...+..++..+..+.+.........+.+..+-+++. +  ..+..+++.-.+..+.  +++.++
T Consensus       257 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~  335 (426)
T PF13520_consen  257 PSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSIL  335 (426)
T ss_dssp             HCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHH
Confidence                   11111 124444556666677777777777777777766665432 1  1111112222222222  222122


Q ss_pred             Hh---hcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925          196 GV---TFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK  233 (275)
Q Consensus       196 Ai---~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~  233 (275)
                      ..   ..|  +++.+.+...  ....+.++++.+.+++.++++
T Consensus       336 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~  376 (426)
T PF13520_consen  336 LLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR  376 (426)
T ss_dssp             HHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred             HHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence            21   123  4445555332  234567777777777776543

...

>TIGR00908 2A0305 ethanolamine permease

Probab=97.66  E-value=0.011  Score=55.17  Aligned_cols=58  Identities=14%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL  113 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~  113 (275)
                      +..+.++..++....|+|.|.......-+|    +|||+| +.+|++..+..++..+|...-.
T Consensus       187 ~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       187 PGAYVGVFAAIPFAIWFFLAVEGVAMAAEE----TKNPKR-DIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence            334567888999999999999999888886    899976 5679999998888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.57  E-value=0.021  Score=53.70  Aligned_cols=174  Identities=15%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH--HHcCCC--Cchh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY--WAFGQD--VDDN  126 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy--~~fG~~--~~~~  126 (275)
                      +..+.++..+++...|+|.|-......-+|    +|||+| +.+|++..+.....+.|...-....  ..+.+-  .+++
T Consensus       196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE----~knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP  270 (456)
T PRK10238        196 PHGFTGLVMMMAIIMFSFGGLELVGITAAE----ADNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP  270 (456)
T ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence            445667888888999999999998888886    899976 5788887777777767765432211  112111  1111


Q ss_pred             ---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHHHH-HHHH
Q 023925          127 ---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYVAF-TLFV  195 (275)
Q Consensus       127 ---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~~~-~~~~  195 (275)
                         +..+... .+...+.+....+..+.+..-..+...+.+..+-+.+.      + .+++.+.+..+-...+.. ..++
T Consensus       271 ~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~  349 (456)
T PRK10238        271 FVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLI  349 (456)
T ss_pred             HHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence               1222222 23333445555555555555445555555544433211      0 011222222211111111 1111


Q ss_pred             HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925          196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~  232 (275)
                      ....|  .++.+.++.+  .+..+.|.+|.+.+++.+|+
T Consensus       350 ~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~  386 (456)
T PRK10238        350 NYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA  386 (456)
T ss_pred             HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            11223  3445555433  34568999999999998763

>PRK10249 phenylalanine transporter; Provisional

Probab=97.56  E-value=0.023  Score=53.46  Aligned_cols=173  Identities=15%  Similarity=0.200  Sum_probs=94.2

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-C---chh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DDN  126 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~---~~~  126 (275)
                      +.++.++..++....|+|.+-......-+|    +|||+| +.+|++..+.....++|...........+++ .   +++
T Consensus       205 ~~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~~~P~k-~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p  279 (458)
T PRK10249        205 ATGWNGLILSLAVIMFSFGGLELIGITAAE----ARDPEK-SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSP  279 (458)
T ss_pred             CCcHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCc
Confidence            456788899999999999999999888886    899986 6789999999888889977544433332221 1   111


Q ss_pred             H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925          127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV  195 (275)
Q Consensus       127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~  195 (275)
                      .   ..+.. ..+...+......+..+.+..-......+.+..+-+.+.      + .+++.+.+.. +..++..+..++
T Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~  358 (458)
T PRK10249        280 FVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLI  358 (458)
T ss_pred             HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            1   12222 123333444444455555544444444444444332211      0 0111122211 111111111222


Q ss_pred             HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                      ....|  .++.+.++.+.  ...+.|++|++.+++.+|
T Consensus       359 ~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        359 NYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             HHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            22223  23444443322  456889999999999874

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.52  E-value=0.019  Score=55.54  Aligned_cols=172  Identities=13%  Similarity=0.078  Sum_probs=99.0

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC---CCchhH
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ---DVDDNV  127 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~---~~~~~i  127 (275)
                      |.++.+++.+.....|+|.|-......-+|    .|||+| ++++++..+..+++++|..+...-...-+.   +.++.+
T Consensus       227 p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE----~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~  301 (557)
T TIGR00906       227 PYGFTGVLSGAATCFFAFIGFDAIATTGEE----VKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPF  301 (557)
T ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHH
Confidence            445678999999999999999999888886    899976 678999999999999999887653322221   111222


Q ss_pred             ---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--C-CCCcceeehhhHHH--HHHHHHHHhh
Q 023925          128 ---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--F-PPGAAVRVVARSAY--VAFTLFVGVT  198 (275)
Q Consensus       128 ---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~-~~~~~~~~~~r~~~--~~~~~~~Ai~  198 (275)
                         ..... .++...+..+........+.........+.+..+-..+. +  . +.+.+.+.-.+..+  .+++.+++..
T Consensus       302 ~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~  380 (557)
T TIGR00906       302 PVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL  380 (557)
T ss_pred             HHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence               22222 234444444555555555555555555555554443221 0  0 00101111122221  2222333333


Q ss_pred             cCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          199 FPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       199 vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                       .+++.+.++...  +..+.|.+++...+.+++
T Consensus       381 -~~~~~l~~l~si--g~ll~y~lv~~~~l~lR~  410 (557)
T TIGR00906       381 -FDLKALVDLLSI--GTLLAYSLVAACVLILRY  410 (557)
T ss_pred             -cCHHHHHHHHHH--HHHHHHHHHHHHHHHhhc
Confidence             356666665422  346889999887777764

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.51  E-value=0.014  Score=55.16  Aligned_cols=53  Identities=15%  Similarity=0.065  Sum_probs=41.4

Q ss_pred             HHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC
Q 023925           63 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG  120 (275)
Q Consensus        63 ~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG  120 (275)
                      .+.|+|.|-......-+|    +|||+| +.+|++..+..++.++|......-...-+
T Consensus       202 ~~~~af~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKD----VDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHh----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            457899999888888776    899976 57899999999999999876655443333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.50  E-value=0.014  Score=55.10  Aligned_cols=170  Identities=14%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC----Cch----
Q 023925           54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD----VDD----  125 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~----~~~----  125 (275)
                      +.++..++....|+|.+-.....+-+|    .||  +|+.+|++..+......+|..+....+...+++    .++    
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e----~k~--~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~  267 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSAR----AEK--RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA  267 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhh----ccC--cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH
Confidence            456778888999999999888777665    665  467789999999999999998877655433321    111    


Q ss_pred             hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHHHHHHHHHhh
Q 023925          126 NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYVAFTLFVGVT  198 (275)
Q Consensus       126 ~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~~~~~~~Ai~  198 (275)
                      .+.++.- ..+...+..+...++.+.+.--......+....+-.++.      + .+++.+.+...-...+.....+...
T Consensus       268 ~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~  346 (468)
T TIGR03810       268 YVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTL  346 (468)
T ss_pred             HHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1222221 234444556666666666665555555444443332211      0 0112222221111111111111111


Q ss_pred             c--CChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925          199 F--PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       199 v--p~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~  232 (275)
                      .  +.++.+.++.+.  ...+.|.++++.++|.+++
T Consensus       347 ~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~  380 (468)
T TIGR03810       347 FSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWR  380 (468)
T ss_pred             ccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            2  345555554433  3568899999999988654

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.45  E-value=0.0093  Score=55.95  Aligned_cols=173  Identities=15%  Similarity=0.146  Sum_probs=100.9

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHH--cCCC-C--ch
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA--FGQD-V--DD  125 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~--fG~~-~--~~  125 (275)
                      |..+.++..++....|+|.|-......-+|    +|||+| +++|++..+.....++|......--..  +.+. .  .+
T Consensus       177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~  251 (446)
T PRK10197        177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAE----SDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVG  251 (446)
T ss_pred             cccHHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccC
Confidence            456778999999999999999999888886    899975 678998888888888998866553222  2220 0  01


Q ss_pred             ---hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhH-HHHHHHHH
Q 023925          126 ---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARS-AYVAFTLF  194 (275)
Q Consensus       126 ---~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~-~~~~~~~~  194 (275)
                         ...+.... .+...+.+....+..+.+..-..+...+.+..+-.++.      + .+++.+.+..+-. ++..+..+
T Consensus       252 ~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l  330 (446)
T PRK10197        252 SYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVV  330 (446)
T ss_pred             cHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence               12333332 23444555556666666666556666666555443221      0 0111122211111 11111112


Q ss_pred             HHhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          195 VGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       195 ~Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                      .....|  .++.++++.|...  .+.+.++++.+++.+|
T Consensus       331 ~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~  367 (446)
T PRK10197        331 VNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK  367 (446)
T ss_pred             HHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            211222  3666776665554  4888889888888865

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.39  E-value=0.036  Score=52.41  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY  116 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy  116 (275)
                      .+.++..++....|+|.+-.....+-+|    +||  +|+.+|++..+..++.++|........
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~--~r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGR----AKN--KSDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHH----Hhc--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999999888887    788  567889999999999999988876533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10836 lysine transporter; Provisional

Probab=97.37  E-value=0.047  Score=51.83  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=47.6

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW  117 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~  117 (275)
                      ++.++..+.....|+|.+-......-+|    +|||+| +.+|++..+.....++|......-..
T Consensus       203 g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~  262 (489)
T PRK10836        203 GFAAMIGVAMIVGFSFQGTELIGIAAGE----SEDPAK-NIPRAVRQVFWRILLFYVFAILIISL  262 (489)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHH----hcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            4556666666678999999998888886    899975 67899999999999999988654433

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.35  E-value=0.034  Score=51.95  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=51.4

Q ss_pred             chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925           52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY  116 (275)
Q Consensus        52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy  116 (275)
                      .+..++..++....|+|.+-......-+|    +|||+| +.+|++..+..++.++|........
T Consensus       184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E----~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        184 TDGHAIIKSILLCLWAFVGVESAAVSTGM----VKNPKR-TVPLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999888886    899965 5789999999999999998877544

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.35  E-value=0.0069  Score=57.19  Aligned_cols=111  Identities=11%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC-CCc---hh-
Q 023925           52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DVD---DN-  126 (275)
Q Consensus        52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~-~~~---~~-  126 (275)
                      .+..++..++....|+|.|-......-+|    +|||+| +++|++..+.....++|.......-...+. +.+   ++ 
T Consensus       203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~  277 (471)
T PRK11387        203 HGGLPILMTMVAVNFAFSGTELIGIAAGE----TENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPF  277 (471)
T ss_pred             ccHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChH
Confidence            34567888888899999999999988887    899976 678999999998899998877644333332 211   11 


Q ss_pred             --HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHh
Q 023925          127 --VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM  168 (275)
Q Consensus       127 --il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~  168 (275)
                        +.++... .+...+..++..++.+.+.--......+.+..+-
T Consensus       278 ~~~~~~~g~-~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~a  320 (471)
T PRK11387        278 VLVFEKVGI-PYAADIFNFVILTAILSAANSGLYASGRMLWSLS  320 (471)
T ss_pred             HHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence              1222222 2333444555555555554444444444444443

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.31  E-value=0.082  Score=49.95  Aligned_cols=56  Identities=14%  Similarity=0.267  Sum_probs=48.0

Q ss_pred             HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925           54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI  114 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~  114 (275)
                      +.++..++....|+|.|-.....+-+|    +|||+| +.+|++..+.....++|......
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGE----AANPRK-SIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999999999888888886    899976 67899999999999999987543

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.24  E-value=0.017  Score=54.53  Aligned_cols=176  Identities=11%  Similarity=0.055  Sum_probs=92.1

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC-CCCc---hh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG-QDVD---DN  126 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG-~~~~---~~  126 (275)
                      |.++.++..++....|+|.|-......-+|    +|||+| +.+|++..+.....+.|..........-+ ++..   ++
T Consensus       207 p~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p  281 (469)
T PRK11049        207 PKGLSGFFAGFQIAVFAFVGIELVGTTAAE----TKDPEK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSP  281 (469)
T ss_pred             cccHHHHHHHHHHHHHHHhcHHHHHHHHHH----hcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCc
Confidence            455678999999999999999999988887    899975 57888877676777778766554432211 1111   11


Q ss_pred             ---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHH-HHHHHH
Q 023925          127 ---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYV-AFTLFV  195 (275)
Q Consensus       127 ---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~-~~~~~~  195 (275)
                         +..... ..+...+..++..+..+.+.-.......+.+..+-..+.      + .+++.+.+..+-...+ .+...+
T Consensus       282 ~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~  360 (469)
T PRK11049        282 FVELFVLVG-LPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVL  360 (469)
T ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence               111111 122333444444555544444333444444433332211      0 0111122211111111 111223


Q ss_pred             HhhcCChhhHHhhhhhhh--hhhhHhhhhhHHHHHHhCC
Q 023925          196 GVTFPFFGDLLGFFGGFG--FTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       196 Ai~vp~~~~v~~l~Ga~~--~~~l~filP~l~yl~~~~~  232 (275)
                      ....|+.++.++.+-+++  ...+.|++++..+++.+++
T Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~  399 (469)
T PRK11049        361 LYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ  399 (469)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334566544444333322  3456788888888887654

>PRK15049 L-asparagine permease; Provisional

Probab=97.16  E-value=0.025  Score=53.93  Aligned_cols=174  Identities=12%  Similarity=0.111  Sum_probs=96.4

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC-CC---chh
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DV---DDN  126 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~-~~---~~~  126 (275)
                      |.++.+++.++....|+|.|-......-+|    +|||+| +.+|++..+.....++|...........+. +.   +++
T Consensus       216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE----~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP  290 (499)
T PRK15049        216 PHGLLPALVLIQGVVFAFASIEMVGTAAGE----CKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSP  290 (499)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCH
Confidence            445566777778899999999888888886    899976 578999888888888888766544333322 11   122


Q ss_pred             H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925          127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV  195 (275)
Q Consensus       127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~  195 (275)
                      .   .+.... .+...+..+...+..+.+..-..+...+.+..+-..+.      + .++..+.+.. +..++.++..++
T Consensus       291 ~~~~~~~~g~-~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l  369 (499)
T PRK15049        291 FVTFFSKLGV-PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFL  369 (499)
T ss_pred             HHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2   222221 23334555555666666655555555555544443221      0 0111122211 111111111122


Q ss_pred             HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925          196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~  232 (275)
                      ....|  .++.++++.+  .+..+.|++|++.+++.+|+
T Consensus       370 ~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        370 NYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence            22223  2445555444  34578899999999988753

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.15  E-value=0.059  Score=51.32  Aligned_cols=59  Identities=8%  Similarity=-0.001  Sum_probs=50.2

Q ss_pred             chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925           52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG  115 (275)
Q Consensus        52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g  115 (275)
                      .+..++..++....|+|.|-.....+-+|    +|||+| +.+|++..+..++.++|.+....-
T Consensus       232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEE----VKNPYR-TLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             CcHHHHHHHHHHHHHHHHhHHHHhhhHHH----hcCchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888999999999999999888886    899975 578999999999999999986544

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.15  E-value=0.1  Score=49.43  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925           56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL  113 (275)
Q Consensus        56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~  113 (275)
                      ++..++....|+|.+-......-+|    +|||+| +++|++..+..++.+++....+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E----~knP~r-~iP~Ai~~s~~i~~~~~~~~~l  270 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEE----IENPEV-VGPRAIIGAVAIGIVTGFCFNI  270 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHh----cCChhh-hcCHHHHHHHHHHHHHHHHHHH
Confidence            4566666678999999998888886    899965 6789999888776655444333

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.15  E-value=0.072  Score=50.90  Aligned_cols=52  Identities=8%  Similarity=-0.082  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925           57 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL  113 (275)
Q Consensus        57 ~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~  113 (275)
                      ....+....|+|.|-......-+|    +|||+| +++|++..+..++.++|....+
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E----~knP~r-~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINE----LENPGR-DYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHH----ccCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence            344555568899998888888886    899976 5789999998888888876443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.07  E-value=0.029  Score=52.66  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG  115 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g  115 (275)
                      |.++.++..++....|+|.+-.....+-+|    +|||+| +.+|++..+......+|.......
T Consensus       197 ~~g~~~~~~a~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~  256 (452)
T TIGR01773       197 PNGIGAVLLAILVTMFSFMGTEIVTIAAAE----SSNPIK-SITRATNSVIWRIIVFYLGSIFIV  256 (452)
T ss_pred             cccHHHHHHHHHHHHHHhccHHHHhHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667999999999999999999988886    899976 578888877887888888765433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=96.96  E-value=0.046  Score=51.39  Aligned_cols=59  Identities=12%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI  114 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~  114 (275)
                      +.++.++..++....|+|.|-......-+|    +|||+| +.+|++..+.....++|......
T Consensus       195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E----~knP~k-~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGE----AKDPEK-SIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             CcchHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678889999999999999999888887    899976 56788887777777778776543

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.86  E-value=0.24  Score=46.24  Aligned_cols=171  Identities=16%  Similarity=0.241  Sum_probs=96.6

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-Cc-----hh
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD-----DN  126 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~~-----~~  126 (275)
                      ...++..+++...++|.|-......-+|    +|||+|. .+|++..+...+..+|...........+++ ..     .+
T Consensus       199 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E----~knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p  273 (466)
T COG0531         199 SFGGILAAILLAFFAFTGFEAIATLAEE----VKNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAP  273 (466)
T ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHH----hcCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCcc
Confidence            4457888999999999999999888886    8998765 679999999999999999888766666542 11     11


Q ss_pred             HhhCC--CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc--------CCCCCcceeehhhHHHHHHHHHHH
Q 023925          127 VLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM--------NFPPGAAVRVVARSAYVAFTLFVG  196 (275)
Q Consensus       127 il~~~--~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~--------~~~~~~~~~~~~r~~~~~~~~~~A  196 (275)
                      .....  ..+.+...+..+...+....+.........+.+..+-+.+.        +.+.+.+.+...-...+..  .+.
T Consensus       274 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~  351 (466)
T COG0531         274 LALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILL  351 (466)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHH
Confidence            11110  11134444555555666666654444444444333332210        1111112221221111111  122


Q ss_pred             hhcC----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925          197 VTFP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       197 i~vp----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~  232 (275)
                      ...+    .++.+.++.  .....+.|.++.+..++.+++
T Consensus       352 ~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~~~~~  389 (466)
T COG0531         352 LLFPLSSIAFNALVSLA--SVAFLIAYLLVALALLVLRRK  389 (466)
T ss_pred             HHhhccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            2222    244444433  334568899999998888765

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.65  E-value=0.46  Score=45.22  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925           55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG  115 (275)
Q Consensus        55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g  115 (275)
                      .++..++....|+|.+-......-+|    +|||+| +.+|++..+......+|.+.....
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E----~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDK----TENPEK-NFPKGIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHh----ccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence            45777788889999999998888886    899976 578999999999999999865443

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.62  E-value=0.45  Score=48.96  Aligned_cols=54  Identities=20%  Similarity=0.331  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925           56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI  114 (275)
Q Consensus        56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~  114 (275)
                      +++..++++.+||.|-.....+-.|    +|||+| +.++++..+..+++++|+++.+.
T Consensus       281 ~f~~~~ai~F~A~tGi~agan~sgE----lKnP~r-~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       281 GFFSLFGIFFPSVTGILAGANISGD----LKDPQK-AIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----ccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888888899998888777775    899986 67899999999999999999763

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=96.05  E-value=0.13  Score=46.56  Aligned_cols=166  Identities=13%  Similarity=0.170  Sum_probs=93.3

Q ss_pred             cchHhHHHHHHH-HHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch----
Q 023925           51 ADYMFRVFNALG-QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD----  125 (275)
Q Consensus        51 ~~~~~~~~~a~~-~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~----  125 (275)
                      +.++.+...+.- ...++|.+.....-...+    +|||++  .+|+...+..++..+|...-...-..+|.+..+    
T Consensus       174 ~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~----~~~~~~--~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~  247 (359)
T TIGR00912       174 ENGLSPILKGAYPVVTFAFGEIEIFFLLFPL----LSKKKK--IKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYW  247 (359)
T ss_pred             ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH----hCChhh--hHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcc
Confidence            345566565554 777888766665555554    677654  459999999999999998888877778754322    


Q ss_pred             ---hHhhCCCCChHHH---HHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhc
Q 023925          126 ---NVLMALKRPGWLI---AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF  199 (275)
Q Consensus       126 ---~il~~~~~~~~~~---~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~v  199 (275)
                         +..+..+-++..-   .+....-......+.-+..+.....+++.+..+++      +....-.+.  +...++ ..
T Consensus       248 P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~  318 (359)
T TIGR00912       248 PTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSIS-FF  318 (359)
T ss_pred             cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHHH-Hc
Confidence               1222222111111   12222334666777777788888888888754421      112222221  222333 34


Q ss_pred             CC-hhhHHhhhh---hhhhhhhHhhhhhHHHHHHhCC
Q 023925          200 PF-FGDLLGFFG---GFGFTPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       200 p~-~~~v~~l~G---a~~~~~l~filP~l~yl~~~~~  232 (275)
                      |+ .+. .....   ...+....+++|.++.+...-+
T Consensus       319 ~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik  354 (359)
T TIGR00912       319 PDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVKIK  354 (359)
T ss_pred             cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54 322 22222   1233456678899877766533

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=95.99  E-value=1.5  Score=41.51  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC
Q 023925           55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG  120 (275)
Q Consensus        55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG  120 (275)
                      ..+..+.....|+|.|-.....+-+|    +|||+| +.+|++..+..+..++|...-+......+
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE----~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEE----TKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHH----hcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            44556666778999999998888886    899976 57899999988887666555444333333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=95.02  E-value=0.37  Score=44.88  Aligned_cols=175  Identities=14%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHH-----hhhhHHHHHcCCCCc
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF-----PVALIGYWAFGQDVD  124 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~-----~~g~~gy~~fG~~~~  124 (275)
                      .|.++.+++.++-+.+|||++...+=---.|    -|||+|. .+|+...-..=..++|.     ++.+.-|-.++++.+
T Consensus       198 fP~G~~g~~~~~~~v~Faf~GiElvGitA~E----t~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S  272 (462)
T COG1113         198 FPNGFLGFLSALQIVMFAFGGIELVGITAAE----AKDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS  272 (462)
T ss_pred             CCCchHHHHHHHHHHHHHHhhHHHHHHHHHh----hcChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC
Confidence            4888999999999999999998776655565    6899764 55665533333333343     344444444444333


Q ss_pred             h--hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC------C-CCCcc-eeehhhHHHHHHHHH
Q 023925          125 D--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN------F-PPGAA-VRVVARSAYVAFTLF  194 (275)
Q Consensus       125 ~--~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~------~-~~~~~-~~~~~r~~~~~~~~~  194 (275)
                      +  .+...+.-+ +...+.+.-.......++-=-++...+++..+-.++..      . ++..+ .-+........++.+
T Consensus       273 PFV~~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~  351 (462)
T COG1113         273 PFVTVFSLIGIP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVV  351 (462)
T ss_pred             cHHHHHHHcCCc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHH
Confidence            3  222222211 22234444344444555555556666776666532211      0 11112 224566667777778


Q ss_pred             HHhhcCChhhHHhhhhhhhh--hhhHhhhhhHHHHHHhCC
Q 023925          195 VGVTFPFFGDLLGFFGGFGF--TPTSYFLPSIMWLVIKKP  232 (275)
Q Consensus       195 ~Ai~vp~~~~v~~l~Ga~~~--~~l~filP~l~yl~~~~~  232 (275)
                      +....|  +.++.++=+..+  ......+=.+.|+|.+|.
T Consensus       352 Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~  389 (462)
T COG1113         352 LNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRKA  389 (462)
T ss_pred             HHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888  445544433333  234455667888998873

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.31  E-value=0.51  Score=45.55  Aligned_cols=174  Identities=12%  Similarity=0.103  Sum_probs=105.4

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH-H-cCCC-CchhH
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW-A-FGQD-VDDNV  127 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~-~-fG~~-~~~~i  127 (275)
                      |..+.++..++-...|+|.+-..+-..-+|    -|||+| +.++++..++..++++|....+.-=+ . |.|. ..++.
T Consensus       228 p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E----~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~  302 (554)
T KOG1286|consen  228 PFGFKGVLSGAATAFFSFIGFELVATTAEE----AKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA  302 (554)
T ss_pred             CCCcceeeHHHHHHHHHHhhHHHHHHHHHh----ccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC
Confidence            445888999999999999998888777776    799975 57899999999999999998864322 2 3221 22211


Q ss_pred             ------h--hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCC----CCCccee-ehhhHHHHHHHHH
Q 023925          128 ------L--MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF----PPGAAVR-VVARSAYVAFTLF  194 (275)
Q Consensus       128 ------l--~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~----~~~~~~~-~~~r~~~~~~~~~  194 (275)
                            .  .+.+.-...-.+.+....+.+..+---.+++..+.+-.+-..+.-.    ..++..+ +.-..+..++..+
T Consensus       303 ~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l  382 (554)
T KOG1286|consen  303 ALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGAL  382 (554)
T ss_pred             ccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHH
Confidence                  1  1111111211356666777777777777888888888775433210    0111111 2222222233333


Q ss_pred             HHhhcC-----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          195 VGVTFP-----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       195 ~Ai~vp-----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                      .++...     .++.++++.|--+  .+++.+=++.|++.++
T Consensus       383 ~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  383 AALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFRY  422 (554)
T ss_pred             HHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeeee
Confidence            344332     2488888876654  5666666667766654

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.25  E-value=0.16  Score=47.92  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ  121 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~  121 (275)
                      ++.++..++....++|.+-......-+|    .|||+| +++|+...+.....++|.......-...+.
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E----~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEE----AKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             chhHHHHhhhhhhccccccccccccccc----CCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            3788999999999999999888877776    799975 578999999999999999887765555554

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=93.48  E-value=6.7  Score=36.78  Aligned_cols=160  Identities=15%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             cchHhHHHHHHHHHHHHhh-CCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC-chhHh
Q 023925           51 ADYMFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVL  128 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~-~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il  128 (275)
                      |.++.++..+++...-.+. .........+-    +|+|+.++.-.....+......+-+..|...-.+=|+.- ..++.
T Consensus       189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy----~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~  264 (442)
T COG1457         189 PTSPLSFLSALSLVIGSFASWGPYAADYSRY----APSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVM  264 (442)
T ss_pred             CCcchhHHHHHHHHHHHHHhhhhhhhhhhhh----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            4455555555554332222 23334444443    444432121133445566677778888888888888765 33444


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh----cCChhh
Q 023925          129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT----FPFFGD  204 (275)
Q Consensus       129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~----vp~~~~  204 (275)
                      ..+..  +. ..+-+...++...+=-.++++..-.+.....+-     ++.++.....+.  ...++|+.    ..+++.
T Consensus       265 ~~~G~--~g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~  334 (442)
T COG1457         265 LGLGG--FG-LPAILILVLGTVTTNANNLYSAGLSFANIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFEN  334 (442)
T ss_pred             Hhccc--HH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            44332  22 244445566666666667777766666665432     223333332222  33333333    457888


Q ss_pred             HHhhhhhhhhhhhHhhhhhH
Q 023925          205 LLGFFGGFGFTPTSYFLPSI  224 (275)
Q Consensus       205 v~~l~Ga~~~~~l~filP~l  224 (275)
                      ++.++|+.........+--.
T Consensus       335 Fl~~i~~~i~P~~~I~iad~  354 (442)
T COG1457         335 FLLLLGYFIPPWGGVMIADY  354 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888887765555554333

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=91.99  E-value=7.9  Score=36.26  Aligned_cols=158  Identities=12%  Similarity=0.072  Sum_probs=79.5

Q ss_pred             cchHhHHHHHHHHHHHH-hhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHH----cCCCCch
Q 023925           51 ADYMFRVFNALGQISFA-FAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA----FGQDVDD  125 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~fa-f~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~~~  125 (275)
                      +.....+..+++..+=. -+.-.+.+...+.    +|+|+...  +....++.........+|..+-..    +|+...+
T Consensus       203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy----~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~  276 (442)
T TIGR00800       203 STGAWAFLYALSLVIGSFATWATNAPDFTRF----GKSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS  276 (442)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcCchhhhhh----cCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            44556666666653322 2334566777775    55544433  446667777777777777777665    8775433


Q ss_pred             --hHhhCCCCChHHHH-----HHHHHHHHHHH-HhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHH-
Q 023925          126 --NVLMALKRPGWLIA-----AANLMVVVHVI-GSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVG-  196 (275)
Q Consensus       126 --~il~~~~~~~~~~~-----i~~~~~~i~~~-~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A-  196 (275)
                        +++..+........     ...++..+..+ ..--.+.++....+...+.+..     +.+|..  .+..++..+++ 
T Consensus       277 p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~~-----~~~r~~--~i~~ii~~~~~~  349 (442)
T TIGR00800       277 PLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPKYI-----KIKRGS--LICAIIALLICP  349 (442)
T ss_pred             HHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcCcc-----ccchHH--HHHHHHHHHhcc
Confidence              33333332211111     11122222222 3444566777676666664321     122311  11111222222 


Q ss_pred             ----hhcCChhhHHhhhhhhhhhhhHhhh
Q 023925          197 ----VTFPFFGDLLGFFGGFGFTPTSYFL  221 (275)
Q Consensus       197 ----i~vp~~~~v~~l~Ga~~~~~l~fil  221 (275)
                          -..+.+.++++++|..........+
T Consensus       350 ~~~~~~~~~~~~FL~~lg~~~~P~~gI~l  378 (442)
T TIGR00800       350 WNLYNSSSKFTTFLSSIGGFLSPIAGVMI  378 (442)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                1223566688888888776665554

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=91.52  E-value=4.5  Score=36.01  Aligned_cols=116  Identities=13%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch----
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD----  125 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~----  125 (275)
                      .+.++.+.+.+.-...+.|.+-....-+...    .|||++.  .|....+.......|...-...-..||.+..+    
T Consensus       170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~----~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~  243 (320)
T PF03845_consen  170 LESGIKPILKGSLVISFPFGGIEILLFLFPF----VKDKKKL--KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTY  243 (320)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceec
Confidence            3567788888877788888877666666664    5666554  38888888888888888888888888864222    


Q ss_pred             h---HhhCCCCChHH---HHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhc
Q 023925          126 N---VLMALKRPGWL---IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR  171 (275)
Q Consensus       126 ~---il~~~~~~~~~---~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~  171 (275)
                      +   ..+..+-++..   -.+....-......+.-+..+...+.+.+.+..+
T Consensus       244 P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~  295 (320)
T PF03845_consen  244 PVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK  295 (320)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1   11222111111   1122223345666677778888888888888654

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=90.56  E-value=13  Score=35.73  Aligned_cols=175  Identities=14%  Similarity=0.165  Sum_probs=98.3

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh-HHHHH-cCCC-----
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL-IGYWA-FGQD-----  122 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~-~gy~~-fG~~-----  122 (275)
                      .+.++.++...+-+..|+|.+...+----.|    -+||+| ..+|++.-.+-=..++|+..-+ .|-+. |.|.     
T Consensus       229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE----s~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~  303 (541)
T COG0833         229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGE----SENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGN  303 (541)
T ss_pred             CCcchHHHHHHHhhheeeeeceeeeeeeecc----cCCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccC
Confidence            4667888999999999999988776555554    788875 5678887766666666665443 23322 3330     


Q ss_pred             -----CchhHhhCCCC--ChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC-------CCCCcceeehhhHHH
Q 023925          123 -----VDDNVLMALKR--PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-------FPPGAAVRVVARSAY  188 (275)
Q Consensus       123 -----~~~~il~~~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~-------~~~~~~~~~~~r~~~  188 (275)
                           .+++....+++  -.....+.|..++++++.+--=.++...+++..+-..+..       +++..+...+..+.+
T Consensus       304 ~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~  383 (541)
T COG0833         304 SSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLL  383 (541)
T ss_pred             CcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHH
Confidence                 11222222211  1123345666666677666666677778888777654431       112223232222333


Q ss_pred             HHHHHHHHhhcC---ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925          189 VAFTLFVGVTFP---FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK  231 (275)
Q Consensus       189 ~~~~~~~Ai~vp---~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~  231 (275)
                      ..+...++...+   .++-++++.|-..  .++.+-=++.|++-+|
T Consensus       384 fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~  427 (541)
T COG0833         384 FGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR  427 (541)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            333233333323   3556677766554  4556666777877764

>PRK11375 allantoin permease; Provisional

Probab=83.21  E-value=43  Score=31.87  Aligned_cols=154  Identities=11%  Similarity=0.075  Sum_probs=74.4

Q ss_pred             HhHHHHHHHHHHHHhh-CCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH----HHHcCCCCch--h
Q 023925           54 MFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDVDD--N  126 (275)
Q Consensus        54 ~~~~~~a~~~~~faf~-~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~~~--~  126 (275)
                      ...+..++...+=++. .-.+.|..-+-    .|++++..  +....++.+...+...+|...    ...+|+...+  +
T Consensus       226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy----~k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~  299 (484)
T PRK11375        226 GFLFLVVINAVVAVWAAPAVSASDFTQN----AHSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD  299 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccchhcc----cCChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH
Confidence            4445555543333343 33467777775    45543322  333345555555544444432    4567765443  3


Q ss_pred             HhhCCCCChHHHHHHHHHHHHHHHHh-hhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh--cCC--
Q 023925          127 VLMALKRPGWLIAAANLMVVVHVIGS-YQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT--FPF--  201 (275)
Q Consensus       127 il~~~~~~~~~~~i~~~~~~i~~~~s-~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~--vp~--  201 (275)
                      ++..... ......+-+...++...+ ...+.++....+...++++.+     ++|...-..  ++..+++..  +.+  
T Consensus       300 i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~i~~--iig~~~~pw~~~~~~~  371 (484)
T PRK11375        300 IVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVLIAS--IISLLICPWKLMENQD  371 (484)
T ss_pred             HHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHHHHH--HHHHHhccHHHhccHH
Confidence            3333321 122223334444444444 345777887777777754321     222211111  122222222  223  


Q ss_pred             -hhhHHhhhhhhhhhhhHhhh
Q 023925          202 -FGDLLGFFGGFGFTPTSYFL  221 (275)
Q Consensus       202 -~~~v~~l~Ga~~~~~l~fil  221 (275)
                       |.+++++.|++.+.....++
T Consensus       372 ~f~~FL~~lg~~l~Pi~gImi  392 (484)
T PRK11375        372 SIYLFLDIIGGMLGPVIGVMM  392 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence             78888888888776665554

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=82.96  E-value=46  Score=32.04  Aligned_cols=66  Identities=9%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC
Q 023925           51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ  121 (275)
Q Consensus        51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~  121 (275)
                      +.+.+.+..++-.-...+.|-.....+-+|    -||+++. -+|++..+..++.++-..+-+.-..+-++
T Consensus       248 ~~~G~afil~f~~~~wt~sGyDa~~H~aEE----~~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~  313 (550)
T KOG1289|consen  248 KNNGWAFILGFFNPAWTMSGYDAAAHMAEE----TKNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPD  313 (550)
T ss_pred             CcchHHHHHhhccceeEEeccCchHHHHHH----hcchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334455665555556666676777777776    6887764 46777777777766655555544555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.28
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.15
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.83
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	84.28

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.28  E-value=4e-05  Score=69.87  Aligned_cols=174  Identities=11%  Similarity=0.073  Sum_probs=99.1

Q ss_pred             hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc----hhH-
Q 023925           53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNV-  127 (275)
Q Consensus        53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~----~~i-  127 (275)
                      ++.++..++....|+|.+........+|    +|||+| +.+|++..+..+..++|...........+.+..    ++. 
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~  263 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFG  263 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHH
Confidence            3667889999999999999999998887    899964 567999999999999999998877766654321    111 


Q ss_pred             --hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--CCCCcceeehhhHHHHHH--HHHHHhh--
Q 023925          128 --LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--FPPGAAVRVVARSAYVAF--TLFVGVT--  198 (275)
Q Consensus       128 --l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~~~~~~~~~~~r~~~~~~--~~~~Ai~--  198 (275)
                        .++.. ..+...+..+...+..+.+.--......+.+..+-..+. +  ..+...++.-.+..++..  +.++...  
T Consensus       264 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~  342 (445)
T 3l1l_A          264 DAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI  342 (445)
T ss_dssp             HHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence              11111 123333444555555555554445555555544433221 0  000011122222222211  1222221  


Q ss_pred             cC----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC
Q 023925          199 FP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR  234 (275)
Q Consensus       199 vp----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~  234 (275)
                      .|    .++.+.++.+  .+..+.|.++++.+++.+++++
T Consensus       343 ~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          343 SPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            22    3555555544  2456889999999999987653

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.15  E-value=7e-05  Score=68.30  Aligned_cols=175  Identities=9%  Similarity=0.067  Sum_probs=99.4

Q ss_pred             CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC-----c
Q 023925           50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-----D  124 (275)
Q Consensus        50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-----~  124 (275)
                      .+.++.+++.+++...|+|.+........+|    +|||+| +.+|++..+..++.++|...........+.+.     +
T Consensus       183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e----~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~  257 (444)
T 3gia_A          183 APSAVSGMIFASAIFFLSYMGFGVITNASEH----IENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE  257 (444)
T ss_dssp             SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG----BSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGG
T ss_pred             CCcchHHHHHHHHHHHHHHHhHHHHHHHHHH----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccc
Confidence            3556678889999999999999999988886    899964 56799999999999999988776554443210     0


Q ss_pred             hhHhhCCC--CChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc---CCCCCcceeehhhHHHH--HHHHHHHh
Q 023925          125 DNVLMALK--RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM---NFPPGAAVRVVARSAYV--AFTLFVGV  197 (275)
Q Consensus       125 ~~il~~~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~---~~~~~~~~~~~~r~~~~--~~~~~~Ai  197 (275)
                      ..+.....  .+++...+..+...+..+.+.--......+.+..+-..+.   ...+.. ++.-.+..++  .++.+++ 
T Consensus       258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~~~P~~a~~~~~~~~~~~~-  335 (444)
T 3gia_A          258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-WFKSTEGLYITSALGVLFA-  335 (444)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS-CCSCTHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC-CCCCcHHHHHHHHHHHHHH-
Confidence            01100000  0122223344444444444444444444444444433221   001111 1111122222  1122222 


Q ss_pred             hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925          198 TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK  233 (275)
Q Consensus       198 ~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~  233 (275)
                      .+.+++.+.++.+.  +..+.|.++++.+++.+|++
T Consensus       336 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~  369 (444)
T 3gia_A          336 LLFNMEGVASITSA--VFMVIYLFVILSHYILIDEV  369 (444)
T ss_dssp             HHSCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHH
T ss_pred             HHcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcC
Confidence            23467777776544  45788899999888887654

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.83  E-value=0.0021  Score=59.56  Aligned_cols=105  Identities=6%  Similarity=-0.017  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc---h-------h
Q 023925           57 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---D-------N  126 (275)
Q Consensus        57 ~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~---~-------~  126 (275)
                      ...++....|+|.|.......-+|    +|||+| +.+|++..+..++.++|....+......+++..   +       .
T Consensus       203 ~~~~~~~~~~a~~G~e~~~~~a~E----~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (511)
T 4djk_A          203 TLVVFVAFILSYMGVEASATHVNE----MSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTV  277 (511)
T ss_dssp             TTTTHHHHHHHHTTGGGGTGGGSS----SSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHh----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHH
Confidence            445677889999999999998886    899975 568999999999999999998877666655321   1       1


Q ss_pred             HhhCCC-CChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q 023925          127 VLMALK-RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG  166 (275)
Q Consensus       127 il~~~~-~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~  166 (275)
                      +..+.. ...+...+..+...+..+.+.--......+.+..
T Consensus       278 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a  318 (511)
T 4djk_A          278 LMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV  318 (511)
T ss_dssp             HHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred             HHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222 0134444555555555555544444444444433

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=84.28  E-value=23  Score=32.44  Aligned_cols=115  Identities=6%  Similarity=-0.075  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHcCCCCchhHhhC-CCCChHHHHHHH-HHHHHHHHHhhhh-hhhcHHHHHHHHhhhccCCCC
Q 023925          100 AYFVNAICYFPVALIGYWAFGQDVDDNVLMA-LKRPGWLIAAAN-LMVVVHVIGSYQV-FAMPVFHLLEGMMIKRMNFPP  176 (275)
Q Consensus       100 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~i~~-~~~~i~~~~s~pl-~~~p~~~~l~~~~~~~~~~~~  176 (275)
                      +..+..++...+|...-...++.-..+++.. ++.......++- +...+..+.+=-. +.++....+.....+.     
T Consensus       259 G~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~-----  333 (501)
T 2jln_A          259 GMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRV-----  333 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTT-----
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccc-----
Confidence            3444455555555543333333333344444 332222122333 4344444333332 6677777766665321     


Q ss_pred             CcceeehhhHHHHHHHHHHHhhc--CChhhHHhhhhhhhhhhhHhhh
Q 023925          177 GAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFL  221 (275)
Q Consensus       177 ~~~~~~~~r~~~~~~~~~~Ai~v--p~~~~v~~l~Ga~~~~~l~fil  221 (275)
                        ..|.....+..++..+++...  ..+.+++++.|.+.......++
T Consensus       334 --i~~~~~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~l  378 (501)
T 2jln_A          334 --FTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMI  378 (501)
T ss_dssp             --CCHHHHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             --cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011111112222223333322  2466777777777665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00