Citrus Sinensis ID: 023937

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHccEEEEEEEccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcc
Coil and Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTfiyyrnrtrppltvSIICKIFGLGLISCCVQTCLYvgigyssptlssaivdlTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKgpalvsmssssnlhnelrspqknwiIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAernpnswrlkpdtelIAIGCSHFVALLIHGhvtrrdlfmfpcishle
Flexible Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Low Complexity Region (SEG)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Disordered region (IsUnstruct)
**SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV****************KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCIS***
Disordered Region (DISOPRED)
****GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM***************NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Disordered Region (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Disordered Region (DISPRO)
*WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS************KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHGHVTRRDLFMFPCISHLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.865	0.646	0.469	4e-50
Q94JU2	367	WAT1-related protein At3g	no	no	0.872	0.653	0.479	9e-48
Q945L4	339	WAT1-related protein At5g	no	no	0.810	0.657	0.453	1e-44
F4KHA8	370	WAT1-related protein At5g	no	no	0.858	0.637	0.436	3e-43
F4JK59	347	WAT1-related protein At4g	no	no	0.832	0.659	0.438	9e-38
Q9LRS5	353	WAT1-related protein At3g	no	no	0.858	0.668	0.407	8e-36
Q9SUF1	384	WAT1-related protein At4g	no	no	0.854	0.611	0.353	6e-35
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.847	0.613	0.357	2e-33
Q56X95	355	WAT1-related protein At3g	no	no	0.850	0.659	0.387	3e-33
F4IYZ0	358	WAT1-related protein At3g	no	no	0.934	0.717	0.375	1e-31

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  198 bits (503), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 155/245 (63%), Gaps = 7/245 (2%)

Query: 8   AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLT 67
           A M AVEC  VGS+TL KAA  +G S +V + YS   + + +LLP + I+ R+R  P   
Sbjct: 22  AAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTL-LLLPLSVIFGRSRRLPAAK 80

Query: 68  VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             +  KIF LGL+    Q     GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR 
Sbjct: 81  SPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRS 140

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLV 181
            ++ AK IG ++SI+GAL V LYKGP +++ +S      +  LH +L S + +WIIGGL+
Sbjct: 141 SATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLL 200

Query: 182 LAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT 241
           LA+  F +S+ YI+QT ++  YPEE+   F   +F T+ S  V L AE N  SW LKPD 
Sbjct: 201 LASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPDI 260

Query: 242 ELIAI 246
            L AI
Sbjct: 261 SLAAI 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  190 bits (483), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 118/246 (47%), Positives = 158/246 (64%), Gaps = 6/246 (2%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA +V +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct: 13  VTA-LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct: 71  MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
           +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct: 131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTEL 243
             F + L YIVQT I+REYP E        + V+  + +V L  E N   +W++KP+  L
Sbjct: 189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIAL 248

Query: 244 IAIGCS 249
           ++I CS
Sbjct: 249 VSIVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 150/238 (63%), Gaps = 15/238 (6%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PPLT S
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPPLTFS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L  +S
Sbjct: 76  ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           S+AK +GT++SI GAL VTLY GP L  MSS S           +WIIGG +LA     +
Sbjct: 136 SVAKVLGTILSIIGALVVTLYHGPML--MSSHS-----------DWIIGGGLLALQYILV 182

Query: 190 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAI 246
           S+ Y+V    +  YP  ++ T +  V + +    V+L+AE+ NP +W ++ D  LI +
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITV 240

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 152/243 (62%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  P     
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRLPSAKTP 83

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR  +
Sbjct: 84  VFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLVLA 183
           + AK IGT+VSI+GAL V LYKGP +++ +S      + +L+  L S   +WIIGGL+LA
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 184 AGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTEL 243
                +S+ YI+QT ++  YPEE+   F+  +  T+ S  V L AE++ NS+ LKP   L
Sbjct: 204 TQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPGVSL 263

Query: 244 IAI 246
            ++
Sbjct: 264 ASV 266

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  157 bits (397), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 8/237 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A+EC  VGSS L KAA  +G S +V + Y+    A  +LL  + I+ R+R+ P    S
Sbjct: 21  MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYV-GATLVLLLLSLIFGRSRSLPTAKSS 79

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++ LR  +
Sbjct: 80  LFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSSA 139

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           + AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L      L
Sbjct: 140 TQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLGLQFLLL 192

Query: 190 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI 246
           S+ +I+QT I+  YPEE+   F   +  T+ S  V L+ E++ NSW+LKP   L ++
Sbjct: 193 SVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFSLASV 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  150 bits (380), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 149/243 (61%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL++S
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLP-SLFFTDRSRSLPPLSLS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V LY GP +   SS   ++       L S   +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+Q  I+  YP     +F+  V V+I ++++ L+ E+ NP+ W ++ D  L
Sbjct: 197 RDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITL 256

Query: 244 IAI 246
           I I
Sbjct: 257 ITI 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 9   VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
           +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct: 16  LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query: 69  SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
           S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct: 74  SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
             S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct: 134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query: 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242
             G    S  Y++Q+  I+ YP +L  + + C+   +QS  VAL+ ER+P+ W +  D  
Sbjct: 194 LLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGWDAR 253

Query: 243 LIA 245
           L A
Sbjct: 254 LFA 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 140/238 (58%), Gaps = 5/238 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query: 70  IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
           I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct: 77  IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query: 129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
            S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct: 137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query: 188 FLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELI 244
             +   I+Q   +R YP EL  T   C+  TI+ T VAL+ E+ NP++W +  DT+L+
Sbjct: 197 SYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLL 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 147/245 (60%), Gaps = 11/245 (4%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+ P L++S
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRSLPSLSLS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK   + +S
Sbjct: 76  ILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS-------PQKNWIIGGLVL 182
           S+AK +GT+VS+ GAL V LY GP + + SS      +LR           +WIIGG +L
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPP--FPQLRQLLLPLSSSNSDWIIGGCLL 193

Query: 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDT 241
           A     + + +I+Q  I++ YP     +F   +  +I ++++ ++AE+ NP+ W +  D 
Sbjct: 194 AIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDI 253

Query: 242 ELIAI 246
            L+ I
Sbjct: 254 TLVCI 258

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 155/269 (57%), Gaps = 12/269 (4%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL+ S
Sbjct: 18  MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLP-SLFFTNRSRSLPPLSAS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GA  V  Y GP +   SS   L+       L S + +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+QT I+REYPE    + +  + ++I ++++ L+ E+ NP+ W +  D  L
Sbjct: 197 QGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITL 256

Query: 244 IAI---GCSHFVALLIHGHVTR--RDLFM 267
             I   G    V  +IH    R  R L++
Sbjct: 257 FTIVTTGIITSVYYVIHSWAIRHKRPLYL 285

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.934	0.738	0.594	7e-80
296086520	350	unnamed protein product [Vitis vinifera]	0.890	0.7	0.587	1e-79
225424734	341	PREDICTED: auxin-induced protein 5NG4-li	0.858	0.692	0.592	2e-77
255581150	348	Auxin-induced protein 5NG4, putative [Ri	0.956	0.755	0.561	9e-75
225424732	351	PREDICTED: auxin-induced protein 5NG4 [V	0.941	0.737	0.526	4e-73
255581154	354	Auxin-induced protein 5NG4, putative [Ri	0.890	0.692	0.572	2e-70
296086528	317	unnamed protein product [Vitis vinifera]	0.818	0.709	0.594	7e-68
356502006	349	PREDICTED: auxin-induced protein 5NG4-li	0.876	0.690	0.574	7e-64
388507570	344	unknown [Medicago truncatula]	0.861	0.688	0.574	1e-63
357485995	344	Auxin-induced protein 5NG4 [Medicago tru	0.861	0.688	0.570	6e-63

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  303 bits (775), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/259 (59%), Positives = 197/259 (76%), Gaps = 2/259 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  + A+M+ +ECLEVG STL+KAAM +G SDFV +VYSNA + + ILL    +++R 
Sbjct: 1   MWSSDLMALMLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALS-VPILLFCCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT+SI+C+IF LG ISC  Q  L+VGI YSSPTL+SA+ DL PAFTFILA+ISRM
Sbjct: 60  RFPPPLTLSILCRIFILGFISCSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGG 179
           EKLDL+  S  AK IGT+VSI GAL VT+YKGP +   SS+  + +E LRS   NW+IGG
Sbjct: 120 EKLDLKAGSCRAKCIGTIVSIIGALIVTIYKGPQIAFASSTFKILDENLRSQISNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  +  ++L Y+VQTSIIR+YP ELM TFIC +FVT+QS++V+LIAER+P++WRLKP
Sbjct: 180 FLLAISAVSIALFYVVQTSIIRDYPAELMLTFICHIFVTMQSSIVSLIAERDPSAWRLKP 239

Query: 240 DTELIAIGCSHFVALLIHG 258
           D ELIA+G S  + L   G
Sbjct: 240 DVELIAVGYSAVLVLAFRG 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086520|emb|CBI32109.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/247 (58%), Positives = 196/247 (79%), Gaps = 2/247 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  +  VM+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R 
Sbjct: 1   MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           +T PPLT SI+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RM
Sbjct: 60  KTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGG 179
           E LDLRV+SS AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG
Sbjct: 120 ENLDLRVRSSRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
           ++ A  +F L++L++ QTSIIR YP ELM T ICC FV +QS++V+L+AERNP++WRL+P
Sbjct: 180 ILSAIAAFMLAVLFVFQTSIIRAYPAELMVTLICCTFVAMQSSIVSLMAERNPSAWRLRP 239

Query: 240 DTELIAI 246
           D ELIAI
Sbjct: 240 DIELIAI 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424734|ref|XP_002266639.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 191/238 (80%), Gaps = 2/238 (0%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R +T PPLT S
Sbjct: 1   MLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRRKTPPPLTTS 59

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RME LDLRV+S
Sbjct: 60  ILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRMENLDLRVRS 119

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGGLVLAAGSFF 188
           S AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG++ A  +F 
Sbjct: 120 SRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGGILSAIAAFM 179

Query: 189 LSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI 246
           L++L++ QTSIIR YP ELM T ICC FV +QS++V+L+AERNP++WRL+PD ELIAI
Sbjct: 180 LAVLFVFQTSIIRAYPAELMVTLICCTFVAMQSSIVSLMAERNPSAWRLRPDIELIAI 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581150|ref|XP_002531388.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528981|gb|EEF30972.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  286 bits (731), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 151/269 (56%), Positives = 195/269 (72%), Gaps = 6/269 (2%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTA MVA E  EVG +T+ KAAM++G S FV  VYSNAFA + IL+PS+FI+YR 
Sbjct: 1   MWGTGVTAAMVATEFTEVGINTMMKAAMSRGMSQFVYTVYSNAFA-LLILIPSSFIFYRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R RP LTVSII + F LGL+SCCVQ  +  G+ YSSPTLS+A++DLTPAFTF+LA+ISRM
Sbjct: 60  RPRPQLTVSIIFRTFLLGLLSCCVQMFMNTGVKYSSPTLSAAMIDLTPAFTFLLAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNELRSPQKNWIIGG 179
           EKLD + QS+ AKSIGT+VS+AGAL VTLYKG  + ++ S SN L+  L      W+ GG
Sbjct: 120 EKLDYKSQSTQAKSIGTIVSVAGALIVTLYKGQPITTLPSESNSLNQPLLLLSSTWVTGG 179

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
           +   AG+  L+LLYIVQT I+++ P EL+ T I C FVT+ S++VAL+AE++ +SW LKP
Sbjct: 180 IFCTAGALCLALLYIVQTWILKDCPAELIITCIACFFVTVLSSIVALVAEKDISSWILKP 239

Query: 240 DTELIAIGCSHFVAL----LIHGHVTRRD 264
           D ELIA  CS   A+    ++H    R+ 
Sbjct: 240 DIELIATFCSAVFAVSIRSVVHAWACRKK 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424732|ref|XP_002266096.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086521|emb|CBI32110.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/262 (52%), Positives = 201/262 (76%), Gaps = 3/262 (1%)

Query: 1   MWSVGVTAV-MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR 59
           MWS  +TAV ++ +ECL+VG  TL+KAAM +G SD+V +VYSNA A + +L   + +++R
Sbjct: 1   MWSSELTAVILLTIECLDVGLITLSKAAMRRGMSDYVFVVYSNALA-VPVLFLCSLLFHR 59

Query: 60  NRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR 119
            R+ PPLT SI+C+IF LGL+SC +Q   ++GIGYSSPTL+SA+ +L PAFT++LA+++R
Sbjct: 60  RRSPPPLTPSILCRIFLLGLVSCSLQMLKFIGIGYSSPTLASAMTNLIPAFTYVLAIVTR 119

Query: 120 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS-SNLHNELRSPQKNWIIG 178
           MEKLDL+V+SS AK +GT+VS+AGAL +T+YKGP +   S++ S L++ L  P+ NWIIG
Sbjct: 120 MEKLDLKVKSSRAKCLGTLVSVAGALLITIYKGPGIEFASTTPSMLNHNLLLPRSNWIIG 179

Query: 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK 238
           G + AA +F +++L + QTSIIR+YP EL+ T I  +F T+QS++V+LIAER+P++WRL+
Sbjct: 180 GFLTAAAAFMVAVLLVFQTSIIRDYPAELIVTLISHIFATMQSSLVSLIAERDPSAWRLR 239

Query: 239 PDTELIAIGCSHFVALLIHGHV 260
            D ELIA+G S    + + G V
Sbjct: 240 LDMELIAVGYSGIFVVALRGAV 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581154|ref|XP_002531390.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528983|gb|EEF30974.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 185/250 (74%), Gaps = 5/250 (2%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTAVM+ +E LEVG +T+ KAAM+KG S ++L+VYSN  A I +LL S+ I+YR 
Sbjct: 4   MWGSGVTAVMLTLEFLEVGMNTVTKAAMSKGMSHYILVVYSNMIA-ISLLLSSSLIFYRK 62

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P +T+SIIC+IF L L+SC  Q   Y+GIGYSSPTL+SA++DLTPAFTFIL + SRM
Sbjct: 63  RIAPAITLSIICRIFVLSLLSCAGQVFTYIGIGYSSPTLASAMIDLTPAFTFILGVFSRM 122

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNEL--RSPQKNWII 177
           E+LDLR++S  AKSIGTMV I G L  TLYKG  +  +SSS + LH E+   SP  NW I
Sbjct: 123 ERLDLRIKSGQAKSIGTMVLIIGGLVFTLYKGLPITGISSSGDELHKEMLFLSPS-NWAI 181

Query: 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237
           GG  LAA S  L+L++++QT IIR+YP  L+     C FVTI S  V+L+AE++PN+WR+
Sbjct: 182 GGFFLAAHSIILALIFVIQTWIIRDYPSVLITNLFTCTFVTILSASVSLVAEKDPNAWRI 241

Query: 238 KPDTELIAIG 247
           KPD +LI+IG
Sbjct: 242 KPDIQLISIG 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086528|emb|CBI32117.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (672), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 172/227 (75%), Gaps = 2/227 (0%)

Query: 33  SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI 92
           SDFV +VYSNA + + ILL    +++R R  PPLT+SI+C+IF LG ISC  Q  L+VGI
Sbjct: 2   SDFVFVVYSNALS-VPILLFCCLLFHRRRFPPPLTLSILCRIFILGFISCSTQMFLFVGI 60

Query: 93  GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152
            YSSPTL+SA+ DL PAFTFILA+ISRMEKLDL+  S  AK IGT+VSI GAL VT+YKG
Sbjct: 61  RYSSPTLASAMTDLVPAFTFILAIISRMEKLDLKAGSCRAKCIGTIVSIIGALIVTIYKG 120

Query: 153 PALVSMSSSSNLHNE-LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF 211
           P +   SS+  + +E LRS   NW+IGG +LA  +  ++L Y+VQTSIIR+YP ELM TF
Sbjct: 121 PQIAFASSTFKILDENLRSQISNWVIGGFLLAISAVSIALFYVVQTSIIRDYPAELMLTF 180

Query: 212 ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALLIHG 258
           IC +FVT+QS++V+LIAER+P++WRLKPD ELIA+G S  + L   G
Sbjct: 181 ICHIFVTMQSSIVSLIAERDPSAWRLKPDVELIAVGYSAVLVLAFRG 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502006|ref|XP_003519813.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 174/247 (70%), Gaps = 6/247 (2%)

Query: 4   VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
           V V+A MVA   LEVG +TL KAA   G S+FV IVYSN F A+F L+PSTF+Y+R R  
Sbjct: 6   VSVSAAMVATLFLEVGLNTLIKAANTNGMSNFVFIVYSN-FLALFFLIPSTFLYHRKRAP 64

Query: 64  PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
           PP+  SI+ +IF L  +S  VQT  Y GI YSSPTL+SA+ DL PAFTFI A+ISRME L
Sbjct: 65  PPIPSSILWRIFLLCCLSTAVQTLTYTGIAYSSPTLNSAMSDLVPAFTFIFAIISRMENL 124

Query: 124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL----HNELRSPQKNWIIGG 179
           +L+++SS AK IGT++SIAGAL +TLYKG  L   SS  NL         S Q +WIIGG
Sbjct: 125 NLKLRSSHAKIIGTVISIAGALIITLYKGMPLTG-SSMRNLVLGGSEAYLSVQLDWIIGG 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  S  LS+L+IVQT II++YPEEL+ T ICC  V I ST+VAL AE NP +W LK 
Sbjct: 184 FLLATSSLCLSVLFIVQTWIIKDYPEELVVTTICCSPVVILSTIVALFAEANPRAWILKS 243

Query: 240 DTELIAI 246
           + ELIA+
Sbjct: 244 NKELIAV 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507570|gb|AFK41851.1| unknown [Medicago truncatula]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 173/247 (70%), Gaps = 10/247 (4%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA MVAV+ LEVG +TL KAA N GTS FV   YSN FA  F LLP TF Y+R R  P 
Sbjct: 8   VTATMVAVQFLEVGGNTLIKAATNDGTSIFVFTFYSNLFALCF-LLPLTFFYHRKRAPPS 66

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           ++ SI+C++F L  +S  VQ     GI  SSPTL+SA++DL PAFTFILALISRME L+L
Sbjct: 67  ISSSILCRMFLLSCLSTAVQILTNTGIECSSPTLASAMLDLLPAFTFILALISRMENLNL 126

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS------SSSNLHNELRSPQKNWIIGG 179
           +  SS AK IGT+VSIAGALTVTLYKG  L+S +       +S +H  ++S   +WI+G 
Sbjct: 127 KHHSSQAKIIGTVVSIAGALTVTLYKGIPLISDAFQNIEIGASGIHLSVKS---DWILGA 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  SF LS+LYIVQT IIR+YPEEL+ T ICC  V I S +VALIAE N   W L+P
Sbjct: 184 FLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRP 243

Query: 240 DTELIAI 246
           D EL+A+
Sbjct: 244 DRELVAV 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485995|ref|XP_003613285.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514620|gb|AES96243.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/247 (57%), Positives = 172/247 (69%), Gaps = 10/247 (4%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA MVAV+ LEVG +TL KAA N G S FV   YSN FA  F LLP TF Y+R R  P 
Sbjct: 8   VTATMVAVQFLEVGGNTLIKAATNDGMSIFVFTFYSNLFALCF-LLPLTFFYHRKRAPPS 66

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           ++ SI+C++F L  +S  VQ     GI  SSPTL+SA++DL PAFTFILALISRME L+L
Sbjct: 67  ISSSILCRMFLLSCLSTAVQILTNTGIECSSPTLASAMLDLLPAFTFILALISRMENLNL 126

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS------SSSNLHNELRSPQKNWIIGG 179
           +  SS AK IGT+VSIAGALTVTLYKG  L+S +       +S +H  ++S   +WI+G 
Sbjct: 127 KHHSSQAKIIGTVVSIAGALTVTLYKGIPLISDAFQNIEIGASGIHLSVKS---DWILGA 183

Query: 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239
            +LA  SF LS+LYIVQT IIR+YPEEL+ T ICC  V I S +VALIAE N   W L+P
Sbjct: 184 FLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRP 243

Query: 240 DTELIAI 246
           D EL+A+
Sbjct: 244 DRELVAV 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.872	0.653	0.475	5.1e-51
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.825	0.669	0.446	6.4e-44
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.876	0.651	0.441	4.5e-43
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.850	0.674	0.444	5.7e-43
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.88	0.685	0.42	5.2e-42
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.88	0.681	0.396	9.6e-41
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.88	0.672	0.416	3.3e-40
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.956	0.734	0.384	1.1e-39
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.854	0.611	0.353	1.2e-35
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.876	0.634	0.353	3.1e-35

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 117/246 (47%), Positives = 159/246 (64%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             VTA+++ +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct:    13 VTALVI-MECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct:    71 MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
             +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct:   131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query:   185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTEL 243
               F + L YIVQT I+REYP E        + V+  + +V L  E N   +W++KP+  L
Sbjct:   189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIAL 248

Query:   244 IAIGCS 249
             ++I CS
Sbjct:   249 VSIVCS 254

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 108/242 (44%), Positives = 151/242 (62%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             +   MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PP
Sbjct:    13 ILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPP 71

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             LT SI+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L
Sbjct:    72 LTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISL 131

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAG 185
               +SS+AK +GT++SI GAL VTLY GP L  MSS S+           WIIGG +LA  
Sbjct:   132 GKKSSVAKVLGTILSIIGALVVTLYHGPML--MSSHSD-----------WIIGGGLLALQ 178

Query:   186 SFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELI 244
                +S+ Y+V    +  YP  ++ T +  V + +    V+L+AE+ NP +W ++ D  LI
Sbjct:   179 YILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLI 238

Query:   245 AI 246
              +
Sbjct:   239 TV 240

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 110/249 (44%), Positives = 153/249 (61%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  
Sbjct:    20 VPFTA-MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRL 77

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P     +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++
Sbjct:    78 PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQI 137

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGP------ALVSMSSSSNLHNELRSPQKNWII 177
              LR  ++ AK IGT+VSI+GAL V LYKGP      +L   S + +L+  L S   +WII
Sbjct:   138 VLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWII 197

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237
             GGL+LA     +S+ YI+QT ++  YPEE+   F+  +  T+ S  V L AE++ NS+ L
Sbjct:   198 GGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFIL 257

Query:   238 KPDTELIAI 246
             KP   L ++
Sbjct:   258 KPGVSLASV 266

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 108/243 (44%), Positives = 151/243 (62%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA M+A+EC  VGSS L KAA  +G S +V + Y+   A + +LL S  I+ R+R+ 
Sbjct:    16 VPFTA-MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLS-LIFGRSRSL 73

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P    S+  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++
Sbjct:    74 PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLA 183
              LR  ++ AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L 
Sbjct:   134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLG 186

Query:   184 AGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTEL 243
                  LS+ +I+QT I+  YPEE+   F   +  T+ S  V L+ E++ NSW+LKP   L
Sbjct:   187 LQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFSL 246

Query:   244 IAI 246
              ++
Sbjct:   247 ASV 249

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 105/250 (42%), Positives = 155/250 (62%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASL-LLLPSLFFTDRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL++SI+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
             +  + +SS+AK +GT++S+ GAL V LY GP +   SS        L   L S   +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+Q  I+  YP     +F+  V V+I ++++ L+ E+N P+ W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   237 LKPDTELIAI 246
             ++ D  LI I
Sbjct:   250 IRFDITLITI 259

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 99/250 (39%), Positives = 152/250 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+
Sbjct:    11 AVLLTA-MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRS 68

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              P L++SI+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
                + +SS+AK +GT+VS+ GAL V LY GP + + SS        L   L S   +WII
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +LA     + + +I+Q  I++ YP     +F   +  +I ++++ ++AE+N P+ W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   237 LKPDTELIAI 246
             +  D  L+ I
Sbjct:   249 IHFDITLVCI 258

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 104/250 (41%), Positives = 151/250 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA++V VE   VG STL K A +KG + +  + YS   A++ +LLPS F   R+ +
Sbjct:    15 AVFLTAMLV-VETSVVGISTLFKFATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSSS 72

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+VSI+ KI  LG +        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS--NLHN---ELRSPQKNWII 177
             +  + +SSLAK +GT++S+ GAL V  Y GP +   SS    N       L S   +W+I
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+Q  I+  YP     +F+  V V+I ++ + L+ E+N P+ W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   237 LKPDTELIAI 246
             +  D  LI I
Sbjct:   253 IHFDITLITI 262

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 106/276 (38%), Positives = 162/276 (58%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASL-LLLPSLFFTNRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+ SI+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    70 LPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWII 177
             +  + +SS+AK +GT++S+ GA  V  Y GP +   SS   L+    SP     + +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR 236
             GG +L     F+S+ +I+QT I+REYPE    + +  + ++I ++++ L+ E+N P+ W 
Sbjct:   190 GGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWI 249

Query:   237 LKPDTELIAI---GCSHFVALLIHGHVTR--RDLFM 267
             +  D  L  I   G    V  +IH    R  R L++
Sbjct:   250 IHFDITLFTIVTTGIITSVYYVIHSWAIRHKRPLYL 285

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 86/243 (35%), Positives = 142/243 (58%)

Query:     9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
             +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct:    16 LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query:    69 SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct:    74 SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query:   128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
               S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct:   134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query:   183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242
               G    S  Y++Q+  I+ YP +L  + + C+   +QS  VAL+ ER+P+ W +  D  
Sbjct:   194 LLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGWDAR 253

Query:   243 LIA 245
             L A
Sbjct:   254 LFA 256

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 87/246 (35%), Positives = 142/246 (57%)

Query:    10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
             MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct:    19 MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query:    70 IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
             I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct:    77 IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query:   129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
              S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct:   137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query:   188 FLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAI 246
               +   I+Q   +R YP EL  T   C+  TI+ T VAL+ E+ NP++W +  DT+L+  
Sbjct:   197 SYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTA 256

Query:   247 GCSHFV 252
               S  V
Sbjct:   257 TYSGIV 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028877001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (350 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-50

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  169 bits (430), Expect = 1e-50
 Identities = 101/243 (41%), Positives = 149/243 (61%), Gaps = 7/243 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+ PPL+VS
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSRSLPPLSVS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +        Y+GI YS+PTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V  Y GP +   SS   L+    SP       +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTEL 243
              F+S+ +I+Q  I+ EYP     +F+  V V+I ++++ L+ E+ NP+ W +  D  L
Sbjct: 197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL 256

Query: 244 IAI 246
           I I
Sbjct: 257 ITI 259

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PLN00411	358	nodulin MtN21 family protein; Provisional	99.97
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.93
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.9
PRK15430	296	putative chloramphenical resistance permease RarD;	99.89
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.87
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.79
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.75
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.74
COG2510	140	Predicted membrane protein [Function unknown]	99.58
COG2962	293	RarD Predicted permeases [General function predict	99.56
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.54
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.54
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.41
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.38
KOG2765	416	consensus Predicted membrane protein [Function unk	99.37
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.31
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.22
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.19
PRK11272	292	putative DMT superfamily transporter inner membran	99.16
PLN00411	358	nodulin MtN21 family protein; Provisional	99.11
PRK11689	295	aromatic amino acid exporter; Provisional	99.06
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.97
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.91
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.89
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.76
PRK15430	296	putative chloramphenical resistance permease RarD;	98.69
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.66
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.66
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.6
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.6
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.59
KOG2766	336	consensus Predicted membrane protein [Function unk	98.51
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.44
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.43
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.38
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.24
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.21
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.02
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.0
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.99
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.98
KOG1580	337	consensus UDP-galactose transporter related protei	97.92
PRK13499	345	rhamnose-proton symporter; Provisional	97.72
KOG1581	327	consensus UDP-galactose transporter related protei	97.72
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.68
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.6
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.54
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.34
COG2962	293	RarD Predicted permeases [General function predict	97.18
PRK13499	345	rhamnose-proton symporter; Provisional	97.03
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.0
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.99
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.97
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.97
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.91
COG2076	106	EmrE Membrane transporters of cations and cationic	96.85
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.78
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.75
KOG2765	416	consensus Predicted membrane protein [Function unk	96.68
PRK11431	105	multidrug efflux system protein; Provisional	96.67
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.61
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.52
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.41
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.97
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.8
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.66
COG2510	140	Predicted membrane protein [Function unknown]	95.22
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.22
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.07
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.71
KOG1580	337	consensus UDP-galactose transporter related protei	94.65
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.99
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	93.33
KOG1581	327	consensus UDP-galactose transporter related protei	93.32
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	92.49
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	91.78
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	90.08
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	89.41
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	88.57
KOG1443	349	consensus Predicted integral membrane protein [Fun	86.67
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	86.22
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	85.26
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	85.22

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.97  E-value=2.1e-29  Score=230.58  Aligned_cols=264  Identities=38%  Similarity=0.615  Sum_probs=203.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (275)
                      ++.++|..|++..+.+++..++.|.+++.|++|..+.++|+.+|+++ ++|+.+.++|++++++.+++++.+....|+++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999 99988765543332555678888888899988


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHh------cccccccccccchhhHHHHHHHHHHHHhhhccCCcc
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR------MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~------~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  155 (275)
                      +.++.+++.|++++++++++++.++.|+++.+++++++      +||++++      +++|++++++|+.++..++++..
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~  162 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV  162 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence            66778899999999999999999999999999999994      6777776      99999999999988775444311


Q ss_pred             cccCC--CCCC-CcC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 023937          156 VSMSS--SSNL-HNE--LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER  230 (275)
Q Consensus       156 ~~~~~--~~~~-~~~--~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~  230 (275)
                      ...++  +.|. +.+  +.....+...|+++.+.++++||+|++++|+..++++++...+++++.++.+.+.+.....++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence            00000  0000 000  011122346799999999999999999999998888755677888888888887777766553


Q ss_pred             -CCCcccccCcchHHHHHHHHHHHHH---HHHHHHhccCccccccc
Q 023937          231 -NPNSWRLKPDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       231 -~~~~~~~~~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~~  272 (275)
                       +...|....+.....++|.|++++.   +|+|+++|.||+.++..
T Consensus       243 ~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~  288 (358)
T PLN00411        243 NNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIF  288 (358)
T ss_pred             CCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHH
Confidence             2233322233345568888876555   78899999999998764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=5.8e-24  Score=190.24  Aligned_cols=229  Identities=11%  Similarity=0.060  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 023937            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ   85 (275)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~   85 (275)
                      .+.++...++||.++++.|...+ ++||.+++++|+..++++ ++++...+++  +  ..+++++......|.++ ..++
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~-ll~~~~~~~~--~--~~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGIL-LLAFLLLRGH--P--LPTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HHHHHHHhCC--C--CCcHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999877 599999999999999999 8887654322  1  23456777788888887 6778


Q ss_pred             HHHHHhh-cccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937           86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (275)
Q Consensus        86 ~~~~~g~-~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (275)
                      .+++.+. +++++++++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++...  +           
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~-----------  143 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--G-----------  143 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--c-----------
Confidence            8889999 9999999999999999999999975 69999999      999999999999876421  1           


Q ss_pred             CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHH
Q 023937          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELI  244 (275)
Q Consensus       165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (275)
                            ..+....|+++.+.++++||.|.+..||..++ + +...+.+++..+...+.+.....+.+...  .++...|.
T Consensus       144 ------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  213 (292)
T PRK11272        144 ------NLSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFL  213 (292)
T ss_pred             ------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHH
Confidence                  01123579999999999999999999997543 3 35677889999988877776654432211  11234578


Q ss_pred             HHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937          245 AIGCSHFVALL----IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       245 ~l~~~gi~~t~----l~~~~i~~~~~~~~~~  271 (275)
                      .++|+++++++    +|.+++++.++..++.
T Consensus       214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~  244 (292)
T PRK11272        214 ALGYLAVFGSIIAISAYMYLLRNVRPALATS  244 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            89999999887    8999999999887664

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.93  E-value=2.5e-23  Score=186.78  Aligned_cols=232  Identities=17%  Similarity=0.159  Sum_probs=169.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (275)
                      +..+..++++++||.++++.|...++ +||..+.++|+.++++. ++++..   ++    +.+++   .....|+.. ..
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~~---~~----~~~~~---~~~~~g~~~~~~   71 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFVA---RP----KVPLN---LLLGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHhc---CC----CCchH---HHHHHHHHHHHH
Confidence            34566888999999999999998875 99999999999998877 666431   11    12222   234445554 55


Q ss_pred             HHHHHHHhhcc-cCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCC
Q 023937           84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS  162 (275)
Q Consensus        84 ~~~~~~~g~~~-~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  162 (275)
                      .+.+++.+.++ .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. ++.         
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~---------  135 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL---------  135 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC---------
Confidence            66677889888 58899999999999999999999999999999      99999999999987752 111         


Q ss_pred             CCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHHHHHHHHHHHhcCCC---Ccccc
Q 023937          163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAERNP---NSWRL  237 (275)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~~~---~~~~~  237 (275)
                             +..+....|+++.+.++++|+.|++++||..++.+++  .....++...+.+.........+++.   .++..
T Consensus       136 -------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (299)
T PRK11453        136 -------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT  208 (299)
T ss_pred             -------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence                   0112234799999999999999999999987654422  23345555565554444444444321   11111


Q ss_pred             cCcchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937          238 KPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       238 ~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~  271 (275)
                      .+...|..++|+|+++++    +|.+++|+.++..++.
T Consensus       209 ~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~  246 (299)
T PRK11453        209 IDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP  246 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            123458899999999998    8889999999876653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=5.9e-23  Score=184.02  Aligned_cols=236  Identities=11%  Similarity=0.039  Sum_probs=165.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (275)
                      |.+.++.+++++++||.+++..|...++ +||..+.++|+.++.++ +.++..   +++. ++.+++    ....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~~---~~~~-~~~~~~----~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTVG---FPRL-RQFPKR----YLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHcc---cccc-ccccHH----HHHHHhHHH
Confidence            5677889999999999999999998876 99999999999999998 877531   1111 222222    22334444 


Q ss_pred             HHHHHHHHHhhc----ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccc
Q 023937           82 CCVQTCLYVGIG----YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS  157 (275)
Q Consensus        82 ~~~~~~~~~g~~----~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~  157 (275)
                      ..++.+++.+++    ++++++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++...+.+ .. 
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~~~-~~-  143 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGDNG-LS-  143 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCCcc-ch-
Confidence            677777777775    467888899999999999999999999999999      999999999999887632110 00 


Q ss_pred             cCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 023937          158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL  237 (275)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~  237 (275)
                      .     .+.  ..+......|+++.+.|+++||.|+++.||..++.+ +....  + ..+.+...+.....+.+..++  
T Consensus       144 ~-----~~~--~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~--~-~~~~~~l~~~~~~~~~~~~~~--  210 (295)
T PRK11689        144 L-----AEL--INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF--F-ILTALALWIKYFLSPQPAMVF--  210 (295)
T ss_pred             h-----hhh--hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH--H-HHHHHHHHHHHHHhcCccccC--
Confidence            0     000  001112346999999999999999999999877765 45432  2 333333333333333221111  


Q ss_pred             cCcchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937          238 KPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       238 ~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~  271 (275)
                       +...|..+++.|+ +++    +|++++|+.+|+.++.
T Consensus       211 -~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~  246 (295)
T PRK11689        211 -SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLAT  246 (295)
T ss_pred             -CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHH
Confidence             1235667778775 444    8999999999988764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=1.3e-22  Score=177.91  Aligned_cols=217  Identities=12%  Similarity=0.055  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 023937           17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS   95 (275)
Q Consensus        17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~~~   95 (275)
                      ||.+++..|..++++.|+....++|+..+.++ +.++...+        .+++++......|.++ ..++.+++.|++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRRR--------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHhc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999887789999999999999988 77764321        1234446677788877 88999999999999


Q ss_pred             CccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchh
Q 023937           96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW  175 (275)
Q Consensus        96 ~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (275)
                      ++++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++.. ++                  +.+..
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~  126 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSIN  126 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------ccccc
Confidence            9999999999999999999999999999999      99999999999988752 11                  11234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHH
Q 023937          176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVAL  254 (275)
Q Consensus       176 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t  254 (275)
                      ..|+.+.+.++++|+.+.+..|+..++.+. +...+.+++..+.+...+.....+++. .+   ....+..+++.+++++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGT  202 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHH
Confidence            679999999999999999999998876652 234555778888888777776544322 11   2234667888888876


Q ss_pred             H----HHHHHHhccCcccccc
Q 023937          255 L----IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       255 ~----l~~~~i~~~~~~~~~~  271 (275)
                      .    ++++++++.++..++.
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~  223 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASI  223 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHH
Confidence            6    8999999999987764

>TIGR00688 rarD rarD protein

Probab=99.90  E-value=7.1e-22  Score=173.40  Aligned_cols=231  Identities=9%  Similarity=-0.017  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCCCHH-HHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLG   78 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g   78 (275)
                      +|+++.+++++++||.++++.|. .+ ++||.++.++|++++.++ +.++...+++++    +.++.+++ .+......|
T Consensus         1 ~~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         1 FKGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            36889999999999999999998 44 499999999999999988 877664433211    10111222 234456666


Q ss_pred             HHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCccccc
Q 023937           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (275)
Q Consensus        79 ~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~  158 (275)
                      ++...++.+++++++++++++++++.++.|+++.+++++++|||++++      ++.|++++++|+.++...+       
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~-------  144 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK-------  144 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc-------
Confidence            666889999999999999999999999999999999999999999999      9999999999998775311       


Q ss_pred             CCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 023937          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK  238 (275)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~  238 (275)
                                  .+ ..    .+.+.++++|+.|.+..||..++ +. ....... +.......+.....+....+ ..+
T Consensus       145 ------------~~-~~----~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~  203 (256)
T TIGR00688       145 ------------GS-LP----WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLLQTDFATVQ-QTN  203 (256)
T ss_pred             ------------CC-ch----HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHHHhccCccc-ccC
Confidence                        01 11    35788999999999999987543 22 2222111 11111111111111111101 111


Q ss_pred             CcchHHHHHHHHHHHHH---HHHHHHhccCcccccc
Q 023937          239 PDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       239 ~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~  271 (275)
                      +...|..+++.|+++..   ++++++++.++..++.
T Consensus       204 ~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~  239 (256)
T TIGR00688       204 PFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL  239 (256)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            12357777778876433   9999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.89  E-value=1.7e-21  Score=174.66  Aligned_cols=233  Identities=11%  Similarity=0.003  Sum_probs=161.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCC-C-CCCHHHHHHHHHHHHH
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-P-PLTVSIICKIFGLGLI   80 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~   80 (275)
                      +.++++.+++++++||.+++..|.. . ++||.++.++|+.++.++ +.++...+++++.. + ..+++++.. ...+.+
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   81 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAV   81 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHH
Confidence            4668999999999999999999975 4 499999999999999998 77766543221100 0 113444333 335555


Q ss_pred             H-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccC
Q 023937           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS  159 (275)
Q Consensus        81 ~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  159 (275)
                      + ..++.++++|++++|+++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++..++        
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~--------  147 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF--------  147 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc--------
Confidence            5 788999999999999999999999999999999999999999999      9999999999998875211        


Q ss_pred             CCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 023937          160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRLK  238 (275)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~  238 (275)
                                 ++ .    ..+.+.++++|+.|++..||..++.. +....+.+++.++.....+.   .+.+...+...
T Consensus       148 -----------~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  208 (296)
T PRK15430        148 -----------GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQN  208 (296)
T ss_pred             -----------CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCC
Confidence                       11 1    14678899999999999998743221 12334455555554432211   12111111111


Q ss_pred             CcchHHHHHHHHHHHHH---HHHHHHhccCccccccc
Q 023937          239 PDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       239 ~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~~  272 (275)
                      +...+..+.+.|+.+..   ++++++++.+|..++..
T Consensus       209 ~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~  245 (296)
T PRK15430        209 PMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFF  245 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            11112333334543333   99999999999887754

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.89  E-value=4.9e-21  Score=171.45  Aligned_cols=229  Identities=7%  Similarity=-0.035  Sum_probs=172.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (275)
                      ++.+++..++++.++|+.++.+.|...++ +||..+.++|+.++.++ ++++...  +++   +.++|++...+..|...
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~~--~~~---~~~~~~~~~~~~~g~~~   81 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFKP--WRL---RFAKEQRLPLLFYGVSL   81 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHhH--Hhc---cCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999999886 99999999999999998 8776432  211   23456667777888776


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (275)
                      ...+.+++.+++++|+++++++.++.|+++.+++    +||.+        +..++.++++|+.++... +.        
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~--------  140 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQ--------  140 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CC--------
Confidence            6677889999999999999999999999998765    34432        445677889999876521 11        


Q ss_pred             CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT  241 (275)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~  241 (275)
                              +.+.....|+++.+.++++|+.|++..||..++.+ +... .++..++++...++....+.. ..++   ..
T Consensus       141 --------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~  206 (293)
T PRK10532        141 --------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH---WS  206 (293)
T ss_pred             --------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HH
Confidence                    01122357999999999999999999999877765 4554 466777777777766543321 1111   12


Q ss_pred             hHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937          242 ELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       242 ~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~  272 (275)
                      .+..++|+|+++|+    +|+++++|.++..++..
T Consensus       207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~  241 (293)
T PRK10532        207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTL  241 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Confidence            35566799999887    88999999999887753

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.87  E-value=8.6e-20  Score=163.95  Aligned_cols=225  Identities=10%  Similarity=0.027  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 023937           18 VGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSP   97 (275)
Q Consensus        18 g~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a   97 (275)
                      ....+..|..+++--+|..+.++|+.++.+. ..+... .+.+++ ++.++++++.++..|++++.++.+.+.|++++++
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWS-SGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3444678998875356999999999999877 655421 122222 4567889999999999988888999999999999


Q ss_pred             cchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhH
Q 023937           98 TLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWII  177 (275)
Q Consensus        98 ~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (275)
                      ++++++.++.|+++.+++.+++|||++++      ++.|++++++|+.+.. .  .                 +.+....
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~--~-----------------~~~~~~~  145 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D--T-----------------ELSFNWA  145 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C--C-----------------cccccHH
Confidence            99999999999999999999999999999      9999999999997643 1  1                 1122356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCCCC---cccc-----cCcchHHHHH
Q 023937          178 GGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNPN---SWRL-----KPDTELIAIG  247 (275)
Q Consensus       178 G~~l~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~---~~~~-----~~~~~~~~l~  247 (275)
                      |+++.+.|+++|++|+++.||..+  +.| +...+.|++..+.+.++|+....|+...   ++..     .....+...+
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL  224 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence            999999999999999999999887  666 5899999999999999998876654211   1110     0001111122


Q ss_pred             HHHHHHHH----HHHHHHhccCccccccc
Q 023937          248 CSHFVALL----IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       248 ~~gi~~t~----l~~~~i~~~~~~~~~~~  272 (275)
                      +.+..+..    ++++++++.+|+..+..
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~  253 (302)
T TIGR00817       225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVG  253 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence            23332222    44468999999987754

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.81  E-value=3.7e-18  Score=151.96  Aligned_cols=232  Identities=12%  Similarity=0.049  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCCHHHHHHHHHHHHHH-HHH
Q 023937            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYY-RNRTRPPLTVSIICKIFGLGLIS-CCV   84 (275)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~-~~~   84 (275)
                      .+..++++++|+...+..|...++ -++  +.++++..+.+. +.|+...+. ++++ +..+++. ......+..+ ..+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVL-LTPYGLWYLAQVGW-SRLPATF-WLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHH-HHHHHHHhcccCCC-CCcchhh-HHHHHHHHHHHHHH
Confidence            456788999999999999966554 344  357788888878 888776532 2222 2233333 3344444444 889


Q ss_pred             HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (275)
Q Consensus        85 ~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (275)
                      +.+++.|++++++++++.+.++.|+++.+++++++|||++++      +++|+++++.|+.++...+ .           
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~-~-----------  138 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR-F-----------  138 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc-c-----------
Confidence            999999999999999999999999999999999999999999      9999999999998775211 1           


Q ss_pred             CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE---LMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT  241 (275)
Q Consensus       165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~  241 (275)
                            . .....|+.+.+.++++|+.|++..|+..++.++.   ...+.++++.+++...+.....++.  .+. ..+.
T Consensus       139 ------~-~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~  208 (281)
T TIGR03340       139 ------A-QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYAR  208 (281)
T ss_pred             ------c-ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHH
Confidence                  1 1223588899999999999999988865443311   1122333333322222222212221  111 1122


Q ss_pred             hHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937          242 ELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       242 ~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~  272 (275)
                      .+..+++.+.+++.    ++++++++.++..++..
T Consensus       209 ~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~  243 (281)
T TIGR03340       209 QILPSATLGGLMIGGAYALVLWAMTRLPVATVVAL  243 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEee
Confidence            34566777777665    88899999999776643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.79  E-value=3.3e-17  Score=150.23  Aligned_cols=230  Identities=13%  Similarity=0.087  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 023937           12 AVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCL   88 (275)
Q Consensus        12 ~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~   88 (275)
                      ....+=.......|..++. +| |..+..+|++++.++ ...+... +.+++ ++.  .++++..++..|+++...+...
T Consensus        56 ~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~-~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~~  131 (350)
T PTZ00343         56 TWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWAT-GFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFGA  131 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444556778988876 99 999999999999877 6554332 22222 333  2457788889999984445556


Q ss_pred             HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCC
Q 023937           89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL  168 (275)
Q Consensus        89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~  168 (275)
                      +.|+++++++.+.++-+++|+++.+++.++++||.+++      ++.+++++++|+.+.+.   .               
T Consensus       132 ~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~---------------  187 (350)
T PTZ00343        132 VISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---K---------------  187 (350)
T ss_pred             HHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---c---------------
Confidence            69999999999999999999999999999999999999      99999999999988652   1               


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHHHHHHHHHHHHhcCCC--Ccccc---
Q 023937          169 RSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP------EELMATFICCVFVTIQSTVVALIAERNP--NSWRL---  237 (275)
Q Consensus       169 ~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~~~~l~~~~~~~~~~--~~~~~---  237 (275)
                        +.+.+..|+++++.|+++|++++++.|+..++.+      ++..+..++.+.|.+.++|+....|...  ..+..   
T Consensus       188 --~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~  265 (350)
T PTZ00343        188 --ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTA  265 (350)
T ss_pred             --cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence              1122467999999999999999999999876532      2355666778999999999887555321  11100   


Q ss_pred             c-CcchHHHHHHHHHHHHH---HHH----HHHhccCcccccc
Q 023937          238 K-PDTELIAIGCSHFVALL---IHG----HVTRRDLFMFPCI  271 (275)
Q Consensus       238 ~-~~~~~~~l~~~gi~~t~---l~~----~~i~~~~~~~~~~  271 (275)
                      . ....+..+++..+.+..   +++    .++++++|+..+.
T Consensus       266 ~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv  307 (350)
T PTZ00343        266 NMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAV  307 (350)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            0 01112334443333322   555    4899999987664

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.75  E-value=5.9e-16  Score=139.88  Aligned_cols=239  Identities=18%  Similarity=0.197  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023937           14 ECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI   92 (275)
Q Consensus        14 ~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~   92 (275)
                      +++=..+...+....+++.+ |..-.++-+..-.++ ..+...+++++++..+..++++.+.+.++++...++.+...|+
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~  100 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY  100 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555555444544 555555555554444 4555444333221122233456677788888888899999999


Q ss_pred             cccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCC
Q 023937           93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ  172 (275)
Q Consensus        93 ~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~  172 (275)
                      +||+.+.+.++..+.-+++.+++++++|||.++.      |++|++++++|+++++..+...           .++++.+
T Consensus       101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~-----------~~~~~~~  163 (334)
T PF06027_consen  101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS-----------GSDSSSG  163 (334)
T ss_pred             hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc-----------cccCCCC
Confidence            9999999999999888899999999999999999      9999999999998876543210           0011234


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHHHHHHHHH
Q 023937          173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSHF  251 (275)
Q Consensus       173 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi  251 (275)
                      .+...||++++.|++.||+++++.++..++.+ +.....+..++|.+...+....+|.. ..+.  +++..... .+.|.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~--~w~~~~~~-~~v~~  239 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESI--HWTSQVIG-LLVGY  239 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhcc--CCChhhHH-HHHHH
Confidence            56789999999999999999999999999876 58888889999999988887777753 2211  12222222 12222


Q ss_pred             -HHHH----HHHHHHhccCcccccccCC
Q 023937          252 -VALL----IHGHVTRRDLFMFPCISHL  274 (275)
Q Consensus       252 -~~t~----l~~~~i~~~~~~~~~~~~~  274 (275)
                       ++..    +....++..+|++..++.+
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLL  267 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATFFNLSLL  267 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccceeehHHH
Confidence             2222    5567899999998887654

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.74  E-value=1.7e-15  Score=133.78  Aligned_cols=235  Identities=16%  Similarity=0.111  Sum_probs=166.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (275)
                      +.......++..+.|+.+....|...++..++....+.|+..+.+. ..+.....+..++ + ..+ .+......+.++ 
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLEPRGLR-P-ALR-PWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhhccccc-c-ccc-chHHHHHHHHHHH
Confidence            3456677888889999999999998765467777777799999887 6655433211111 1 111 134455666666 


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHH-HHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCC
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS  160 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  160 (275)
                      ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|+.++...+..       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-------  147 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-------  147 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-------
Confidence            88999999999999999999999999999999996 6779999999      999999999999887632111       


Q ss_pred             CCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcccccC
Q 023937          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF-ICCVFVTIQSTVVALIAERNPNSWRLKP  239 (275)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~g~~~~l~~~~~~~~~~~~~~~~~  239 (275)
                               +... ...|+.+.+.++++|+++.+..|+.. +.+ +..... +++.  ...............  .+ ..
T Consensus       148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~-~~  210 (292)
T COG0697         148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSGFG--AP-IL  210 (292)
T ss_pred             ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcccc--cc-CC
Confidence                     0111 57899999999999999999999987 554 355555 4444  222222222222111  11 11


Q ss_pred             cchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937          240 DTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       240 ~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~  271 (275)
                      ...+..+.+.|+++++    ++++++++.++..++.
T Consensus       211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  246 (292)
T COG0697         211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVAL  246 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            2346777888888874    8889999999987664

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.58  E-value=3.5e-14  Score=108.82  Aligned_cols=135  Identities=12%  Similarity=0.088  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (275)
                      ..++.++++++||...++.|...++ +||..-.+.|.++..++ +..++...++.+.....+.|.|..+..-|+.+....
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence            4577889999999999999999875 99999999999999999 888887766644433457788888888887778999


Q ss_pred             HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      .+||.+++.-.++..+-+..+.|+++.++++++++||++.+      +|+|+++..+|+++++
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999999      9999999999997764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.56  E-value=2e-12  Score=112.53  Aligned_cols=227  Identities=11%  Similarity=0.024  Sum_probs=166.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLIS   81 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~   81 (275)
                      .++++..+.+.++||..+...|.. +. .|+.++...|.+-+.++ ++.+....++++...  ..++|.+......+.+.
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            578999999999999999999976 44 99999999999999988 777665544432111  23445556666666666


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (275)
                      ..+...|.|+...-..-+++.=.+..|++..+++.+++|||+++-      |+++++++.+|+....+..+.        
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~--------  148 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS--------  148 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence            889999999999999999999999999999999999999999999      999999999999877653221        


Q ss_pred             CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT  241 (275)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~  241 (275)
                                 -.     ...+.=+++|+.|...-|+.  +.| +.+-.+..++.-....+.+.+..+++........+.
T Consensus       149 -----------lp-----wval~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~  209 (293)
T COG2962         149 -----------LP-----WVALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANS  209 (293)
T ss_pred             -----------Cc-----HHHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCch
Confidence                       11     22455588999999885543  344 355555666666666666666555543201111234


Q ss_pred             hHHHHHHHHHHHHH---HHHHHHhccCc
Q 023937          242 ELIAIGCSHFVALL---IHGHVTRRDLF  266 (275)
Q Consensus       242 ~~~~l~~~gi~~t~---l~~~~i~~~~~  266 (275)
                      .+..+...|+++.+   ++..+-++.+-
T Consensus       210 ~~~LLv~aG~vTavpL~lf~~aa~~lpl  237 (293)
T COG2962         210 LWLLLVLAGLVTAVPLLLFAAAAKRLPL  237 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCH
Confidence            45667778888887   77777666553

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.54  E-value=2.8e-15  Score=128.24  Aligned_cols=234  Identities=14%  Similarity=0.149  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023937            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL   88 (275)
Q Consensus         9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (275)
                      +..+. .++.+..+..+...  +.||.+..-.|+++-.+. ..|...++...-+-|+..|   +++++.|++|+......
T Consensus        42 l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgvmlm  114 (346)
T KOG4510|consen   42 LLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGVMLM  114 (346)
T ss_pred             ehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhHHHHH
Confidence            33444 55666666666554  378999999997777666 6665554332211133333   56788999996666667


Q ss_pred             HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCC
Q 023937           89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL  168 (275)
Q Consensus        89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~  168 (275)
                      |+++.|.+-++|+++.++.|+++.++++.++|||.++.      +.++..+.+.|+++++  +++.+.+      ++++.
T Consensus       115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG------~~t~g  180 (346)
T KOG4510|consen  115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFG------DTTEG  180 (346)
T ss_pred             HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccC------CCccc
Confidence            78999999999999999999999999999999999999      9999999999999887  4555432      22221


Q ss_pred             -CCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccC-cchHHH
Q 023937          169 -RSPQ-KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP-DTELIA  245 (275)
Q Consensus       169 -~~~~-~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~  245 (275)
                       ++.+ +....|....+.+++.-|.-.++.|+..|+.+. +..+.|....+.+..++.....+.    |..++ ...++.
T Consensus       181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~----~~lP~cgkdr~l  255 (346)
T KOG4510|consen  181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA----VQLPHCGKDRWL  255 (346)
T ss_pred             cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc----eecCccccceEE
Confidence             2222 345678888888888888888888998888774 666677778888776666554332    22211 122333


Q ss_pred             HHHH---HHHHHHHHH--HHHhccCccc
Q 023937          246 IGCS---HFVALLIHG--HVTRRDLFMF  268 (275)
Q Consensus       246 l~~~---gi~~t~l~~--~~i~~~~~~~  268 (275)
                      ++.+   |+.++.+.+  ..++|.||+.
T Consensus       256 ~~~lGvfgfigQIllTm~lQiErAGpva  283 (346)
T KOG4510|consen  256 FVNLGVFGFIGQILLTMGLQIERAGPVA  283 (346)
T ss_pred             EEEehhhhhHHHHHHHHHhhhhccCCee
Confidence            3334   445555444  4556888764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.54  E-value=4.1e-14  Score=109.58  Aligned_cols=124  Identities=22%  Similarity=0.262  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 023937           15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG   93 (275)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~   93 (275)
                      ++||.+.++.|...++ .||....++|+..+.+. +.... ..++++. .+.+.+++......+.++ ..++.+++.+++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999999876 99999999999999953 22222 2233222 445667778888889887 899999999999


Q ss_pred             ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        94 ~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ++++++++.+.++.|+++.+++++++||+++++      +++|+++++.|+.++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.51  E-value=2.1e-12  Score=115.62  Aligned_cols=228  Identities=12%  Similarity=0.016  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 023937            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (275)
Q Consensus         7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (275)
                      ++..++++++||...+..|...  +.++.++.  |..++.++ +..+....++ .  ++.+++.+..-+..|++-...+.
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~w~ig~~   74 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVL-P--EFWALSIFLVGLLSGAFWALGQI   74 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhC-C--cccccHHHHHHHHHHHHHHhhhh
Confidence            5678889999999999999864  58888776  78888887 6655544322 1  11123333334444444467889


Q ss_pred             HHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchh----hHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937           87 CLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSSS  161 (275)
Q Consensus        87 ~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (275)
                      +++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++      +    .+|++++++|+.++...++.+       
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~-------  141 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS-------  141 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence            9999999999999999988 888899999999999999999      8    999999999988775322110       


Q ss_pred             CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH---HHHHHHHHHHHHhcCCCCccccc
Q 023937          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV---FVTIQSTVVALIAERNPNSWRLK  238 (275)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~  238 (275)
                          .++++. .+...|..+.+.++++|+.|.+..|+.  +.+ |...++.+..   .+++......  .+.+  ++.  
T Consensus       142 ----~~~~~~-~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--  207 (290)
T TIGR00776       142 ----AGIKSE-FNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--  207 (290)
T ss_pred             ----cccccc-cchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--
Confidence                000000 233579999999999999999999975  355 5776444443   3433322221  1111  111  


Q ss_pred             CcchHHHHHHHHHHHHH---HHHHHHh-ccCccccc
Q 023937          239 PDTELIAIGCSHFVALL---IHGHVTR-RDLFMFPC  270 (275)
Q Consensus       239 ~~~~~~~l~~~gi~~t~---l~~~~i~-~~~~~~~~  270 (275)
                      +...+..++ .|++-..   +|..+.+ +.++..++
T Consensus       208 ~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~  242 (290)
T TIGR00776       208 KYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSF  242 (290)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHH
Confidence            122344444 6776322   6777777 67665543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.41  E-value=8e-11  Score=100.46  Aligned_cols=218  Identities=12%  Similarity=0.013  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (275)
                      +++.++.+.+.-=...-+.|...+. ++|.-....|..++.++ ++++..-    ++ .+.+++++..+...|......+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP----wr-~r~~~~~~~~~~~yGvsLg~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP----WR-RRLSKPQRLALLAYGVSLGGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH----HH-hccChhhhHHHHHHHHHHHHHH
Confidence            5777777777766667788888887 99999999999999998 7775421    11 3456677788888888777788


Q ss_pred             HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 023937           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (275)
Q Consensus        86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  165 (275)
                      .+||.+++++|-+.+..+-++.|+....++    .+|.  +      +.+.+.+++.|+.++.- .+.            
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~--~------d~vwvaLAvlGi~lL~p-~~~------------  140 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRL--R------DFVWVALAVLGIWLLLP-LGQ------------  140 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccch--h------hHHHHHHHHHHHHhhee-ccC------------
Confidence            889999999999999999999998766533    2322  3      77778888999987752 221            


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHH
Q 023937          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELI  244 (275)
Q Consensus       166 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~  244 (275)
                          +....+..|..+.+.+..||+.|.+..||..+..+. ..-+...+..+.+..+|+......+ +.++     ..+.
T Consensus       141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~ag~~l~~p-----~ll~  210 (292)
T COG5006         141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQAGPALFSP-----SLLP  210 (292)
T ss_pred             ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhhhhcchhhcCh-----HHHH
Confidence                123345789999999999999999999998765554 5667788899999989887743322 1122     2234


Q ss_pred             HHHHHHHHHHH----HHHHHHhccC
Q 023937          245 AIGCSHFVALL----IHGHVTRRDL  265 (275)
Q Consensus       245 ~l~~~gi~~t~----l~~~~i~~~~  265 (275)
                      .-+..|+.+++    +=-.+++|.+
T Consensus       211 laLgvavlSSalPYsLEmiAL~rlp  235 (292)
T COG5006         211 LALGVAVLSSALPYSLEMIALRRLP  235 (292)
T ss_pred             HHHHHHHHhcccchHHHHHHHhhCC
Confidence            45557778877    3333555544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.38  E-value=1.6e-11  Score=107.52  Aligned_cols=130  Identities=20%  Similarity=0.196  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (275)
                      .++.+..++++++|+.+.+..|...++ .+  +..+..+|+.++.++ +.|+....+++   +..+.+++......+.++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence            457888999999999999999998754 66  445666889999998 88887654332   223567777788889888


Q ss_pred             -HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 023937           82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA  144 (275)
Q Consensus        82 -~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  144 (275)
                       .+++.++++++++.+++.++++.+++|+++.++++++++||++.+      +++|.++.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             889999999999999999999999999999999999999999999      999999999886

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.37  E-value=5.8e-12  Score=112.71  Aligned_cols=179  Identities=14%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcc
Q 023937           76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (275)
Q Consensus        76 ~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  155 (275)
                      ....+-+.+++.+..++++|+.+...+++.+.-+|+..++.++..||+++.      |.+++.+.+.|++++.+.+..+.
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc
Confidence            333344788899999999999999999999999999999999999999999      99999999999998876533210


Q ss_pred             cccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH---HHHHHHHHHHHHHHHHHHHhcC-C
Q 023937          156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELM---ATFICCVFVTIQSTVVALIAER-N  231 (275)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~-~  231 (275)
                                  ++....+...|+++.+++|+.||.|+++.||...+.+..+.   .-.+..+|..+++-|..++.+. .
T Consensus       238 ------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~  305 (416)
T KOG2765|consen  238 ------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG  305 (416)
T ss_pred             ------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence                        01234456899999999999999999999998766531122   2223334444444444443221 1


Q ss_pred             CCcccccCcchHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937          232 PNSWRLKPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS  272 (275)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~  272 (275)
                      .+..+.+.......++..+..+++    +|.|+.-..+|..+..+
T Consensus       306 ~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlg  350 (416)
T KOG2765|consen  306 EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLG  350 (416)
T ss_pred             cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheee
Confidence            112233334444556677888888    89999888888877654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.31  E-value=1.4e-09  Score=97.94  Aligned_cols=217  Identities=12%  Similarity=0.102  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHH
Q 023937           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI  113 (275)
Q Consensus        34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~l  113 (275)
                      |..+.+.++....+. -.+.....++++. ++.   .+......+++..++..+-..+++++|...-.++-.+.|+.+.+
T Consensus        32 ~~~lt~~q~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi  106 (303)
T PF08449_consen   32 PLFLTFVQFAFNALF-SFILLSLFKFPKS-RKI---PLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMI  106 (303)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHhccccCC-CcC---hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence            889999999998887 6665544331111 222   33556677777788888999999999999888888999999999


Q ss_pred             HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (275)
Q Consensus       114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  193 (275)
                      ++.+++|+|.+++      |+.++++..+|+.+....+..+-          .++++.......|+++.+.+.++-+...
T Consensus       107 ~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~----------~~~~~~~~~~~~G~~ll~~sl~~~a~~~  170 (303)
T PF08449_consen  107 LGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSS----------SSSNSSSFSSALGIILLLLSLLLDAFTG  170 (303)
T ss_pred             HHHHhcCccccHH------HHHHHHHHHhhHheeeecccccc----------cccccccccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999      99999999999988765432210          0001111223349999999999999999


Q ss_pred             HHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH--hcCCCCccc--ccCcchHHHHHHHHHH---HHHHHHHHHhccC
Q 023937          194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALI--AERNPNSWR--LKPDTELIAIGCSHFV---ALLIHGHVTRRDL  265 (275)
Q Consensus       194 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~--~~~~~~~~~--~~~~~~~~~l~~~gi~---~t~l~~~~i~~~~  265 (275)
                      ++++|..++++ ++...+++..+++.+...+....  .++....++  ..++..+..++...+.   +.......+++.|
T Consensus       171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~  250 (303)
T PF08449_consen  171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFS  250 (303)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999987654 35789999999999988877776  333211111  1112233333333333   3336667888888


Q ss_pred             cccccc
Q 023937          266 FMFPCI  271 (275)
Q Consensus       266 ~~~~~~  271 (275)
                      |+..++
T Consensus       251 al~~t~  256 (303)
T PF08449_consen  251 ALTTTI  256 (303)
T ss_pred             chhhhh
Confidence            887653

; GO: 0055085 transmembrane transport

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.22  E-value=3.1e-11  Score=92.96  Aligned_cols=103  Identities=22%  Similarity=0.350  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHH
Q 023937           39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL  116 (275)
Q Consensus        39 ~~R~~~a~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~  116 (275)
                      .+|+..+.++ +..+...+++.+. .+..++|.+.++...|.++ ..++.++++|.++++ +.++.+.++.|+++.+++.
T Consensus         2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            6899999999 8887766433211 1222334456677778888 589999999999999 5888999999999999999


Q ss_pred             HHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937          117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus       117 ~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      +++|||++++      ++.+++++++|++++..
T Consensus        80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   80 LFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            9999999999      99999999999998864

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.19  E-value=9.2e-10  Score=98.60  Aligned_cols=134  Identities=13%  Similarity=0.085  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (275)
                      .+.+..+.++++|+.+.+..|...++ .+|..... -..++.+. +.|+......  . ...+...+...+++|+++ .+
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence            36778899999999999999988654 78877654 44566666 7776654322  1 223455555567889988 88


Q ss_pred             HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhc
Q 023937           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (275)
Q Consensus        84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  150 (275)
                      .+.+++++++++++++++.+.+++|+++.++++++++|+++..      +++|.++.++|++.....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999      999999999999877643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.16  E-value=1.1e-09  Score=98.01  Aligned_cols=135  Identities=13%  Similarity=0.020  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (275)
                      .+.+..++++++|+.+.+..|...+  -++....++++.++.+. +.++....+.... ...+.+.+..+.+.++++ .+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999998633  24566778899999888 8887654322111 123567778888999988 88


Q ss_pred             HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      .+.++++++++.++++++++.+++|+++.++++++++|+++..      +++|.++.+.|+.+...
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999      99999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.11  E-value=3.3e-09  Score=97.60  Aligned_cols=137  Identities=14%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCCCHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNR---TRPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~   81 (275)
                      +.+.++.++++|+.+.+..|...++ .|+ ....++....+.+. +.+......+..   +....+... ..+++.++..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence            4567888999999999999988765 654 56677877777776 555444432211   111223332 3355556555


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  151 (275)
                      .+.+.+|++++++.+++.++.+.+++|+++.++++++++|++++.      +++|.++.+.|+.+....+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            668889999999999999999999999999999999999999999      9999999999998876543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.06  E-value=4.4e-09  Score=94.32  Aligned_cols=131  Identities=16%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (275)
                      .+.++++.++++|+.+.+..|+..+ +.++.....   ..+.+. +.+.....+ ... ...+.+.+..+.+.++...+.
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~-l~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~t~~~  228 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALA-LWIKYFLSP-QPA-MVFSLPAIIKLLLAAAAMGFG  228 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHH-HHHHHHHhc-Ccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999754 477765432   333344 444333222 111 234556677777777544789


Q ss_pred             HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        85 ~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      +.+|+++++++++++++.+.+++|+++.++++++++|+++..      +++|.++.+.|+.+..
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            999999999999999999999999999999999999999999      9999999999997664

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.97  E-value=7.8e-09  Score=91.98  Aligned_cols=132  Identities=15%  Similarity=0.021  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (275)
                      ++....++++++|+.+.+..|...+ +.+|.    ....+.+....+. +.+.....+++ . ...+.+.+......+.+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWP-FLLLYLKRHGR-S-MFPYARQILPSATLGGL  219 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHH-HHHHHHHHhcc-c-hhhhHHHHHHHHHHHHH
Confidence            3556788899999999999987533 24432    2333444433222 22222211211 1 11122233344555555


Q ss_pred             H-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (275)
Q Consensus        81 ~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (275)
                      . .+.+.++++++++.+++.++.+.+++|+++.++++++++|+++++      +++|.++.++|+.+
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            5 788999999999999999999999999999999999999999999      99999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.97  E-value=2.6e-08  Score=89.42  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCCCHHHHHHHHHHH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKG--TSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG   78 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~g   78 (275)
                      .+.+..+.++++|+...+..|...+++  .+......+-..++.+. +.+.....+...    .....+.+.+..+++.|
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            467788999999999999999875432  22334455555555544 433333222211    00234667788889999


Q ss_pred             HHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        79 ~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      +++ .+.+.++++++++.++++++.+..++|+++.++++++++|+++..      +++|.++.++|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            998 889999999999999999999999999999999999999999999      9999999999997654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.91  E-value=1.9e-07  Score=81.53  Aligned_cols=153  Identities=14%  Similarity=0.211  Sum_probs=112.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937           67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (275)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (275)
                      ++|+..+...-+++..+.+.+.+.++++.+++.-.++..+-.+++++++.+++|+|++++      ||+++.+..+|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456667777778888888999999999999999999999999999999999999999999      99999999999987


Q ss_pred             hhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHH
Q 023937          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVA  225 (275)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~  225 (275)
                      +...+...   .+.+.+...+.+........|.++.+.++++-++..++..|..|+.+.+ ...+....++|.+..++..
T Consensus        87 v~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~  163 (244)
T PF04142_consen   87 VQLSSSQS---SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL  163 (244)
T ss_pred             eecCCccc---cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            64322110   0000000000111234567999999999999999999999998875433 4445555566666665554


Q ss_pred             HHh
Q 023937          226 LIA  228 (275)
Q Consensus       226 ~~~  228 (275)
                      ...
T Consensus       164 ~~~  166 (244)
T PF04142_consen  164 LLS  166 (244)
T ss_pred             hcc
Confidence            443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.89  E-value=1.9e-08  Score=90.31  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--------CCH-HHHHHH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP--------LTV-SIICKI   74 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~--------~~~-~~~~~~   74 (275)
                      .+.+..++++++|+...+..|...++ +.||..+..+.+..+.+. +.|+....+.....+.        ... ..+...
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            46778899999999999999998762 389999999999999999 9998765331110000        010 011112


Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      +..+... ...+.+++.++++++++.+++..+..|+++.++++++++|+++.+      +++|.+++++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            2222222 334467778999999999999999999999999999999999999      99999999999987653

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.76  E-value=3.2e-07  Score=73.76  Aligned_cols=134  Identities=19%  Similarity=0.244  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC------C----CCHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVS   69 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~------~----~~~~   69 (275)
                      +++..+.+.++-+...+..|..+++      ..++.++..+-...+.++ +.|.....++.+..+      +    .+.+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence            3567888999999999999998876      589999999999999999 999877655432100      0    0224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937           70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (275)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (275)
                      .+..++..|++....+...+..++++++...++..+.-.+.+.+++.++++|+++.+      +++|+++++.|..+
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            455555666666888999999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.69  E-value=4.3e-07  Score=81.48  Aligned_cols=131  Identities=12%  Similarity=0.083  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023937            9 VMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (275)
Q Consensus         9 ~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (275)
                      ..++++++|+.+.+..|...+++ .++.....+-..++.+. ..+..... .... ...+...+......|....+.+.+
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIADSS-TSHM-GQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHccCC-cccc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999864321 12233344445555444 33322100 0000 111222233344455545788999


Q ss_pred             HHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        88 ~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ++.++++.+++.++.+.+++|++..++++++++|+++++      +++|.++.++|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      9999999999987765

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.66  E-value=9.8e-07  Score=81.10  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhhccC-C---------CCCCCH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-T---------RPPLTV   68 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~-~---------~~~~~~   68 (275)
                      .+.+..++++++|+...+..|..+++      ..++..+..+...+++++ ++|+....+... .         ......
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            36788899999999999999998764      256777777778899999 999876432110 0         001111


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           69 SIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        69 ~~~~~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      .........+.+. ...+.+-|.+++++++..+++..++.|+++.++++++++|+++..      +++|.++++.|+.+.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHH
Confidence            1111111222222 444445557999999999999999999999999999999999999      999999999999765


Q ss_pred             h
Q 023937          148 T  148 (275)
Q Consensus       148 ~  148 (275)
                      .
T Consensus       347 s  347 (350)
T PTZ00343        347 S  347 (350)
T ss_pred             h
Confidence            3

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.66  E-value=4e-07  Score=81.53  Aligned_cols=128  Identities=14%  Similarity=0.031  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNA----FAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGL   79 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~----~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (275)
                      .|+.+..+++.+.++.+....|..   +.||....+....    .+.++ +.+.   + + .+ +. +.+.....+..|+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~-~~~~---~-~-~~-~~-~~~~~~~~~~~Gi  219 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIF-NLGH---I-L-AK-PL-KKYAILLNILPGL  219 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHH-HHHH---h-c-cc-ch-HHHHHHHHHHHHH
Confidence            678999999999999999999965   3789888666655    44444 4433   1 1 12 22 2333344555777


Q ss_pred             HHHHHHHHHHHhhc-ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhh----HHHHHHHHHHHHhh
Q 023937           80 ISCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT  148 (275)
Q Consensus        80 ~~~~~~~~~~~g~~-~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~ll~  148 (275)
                      +-.+.+.+|+.+.+ +.+++.++++.+.+|+.+.+.+.+++||+.+++      ++    +|.++.+.|+.++.
T Consensus       220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            76778889999999 999999999999999999999999999999999      88    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.60  E-value=9.4e-07  Score=79.45  Aligned_cols=221  Identities=14%  Similarity=0.114  Sum_probs=156.5

Q ss_pred             HHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 023937           21 STLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT   98 (275)
Q Consensus        21 ~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~   98 (275)
                      ....|..++. +++ |..+...++..+.+. +........++.. +..++..+..++-+|++-++...+-..++++.+.+
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs  110 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS  110 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence            3456777663 343 788888888877777 5554433222221 21233466778888888888888889999999999


Q ss_pred             chhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHH
Q 023937           99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG  178 (275)
Q Consensus        99 ~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (275)
                      ...++=.++|+++.+++.++.+|+.+++      .+..++....|+.+.+..                    +..-+..|
T Consensus       111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~~G  164 (316)
T KOG1441|consen  111 FYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNLFG  164 (316)
T ss_pred             HHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccHHH
Confidence            9999999999999999999999999999      888888888898765421                    22345789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----hcCchhHHHHHHHHHHHHHHH-HHHHHhcCCCCc--ccccCcchHHHHHHHHH
Q 023937          179 GLVLAAGSFFLSLLYIVQTSIIR----EYPEELMATFICCVFVTIQST-VVALIAERNPNS--WRLKPDTELIAIGCSHF  251 (275)
Q Consensus       179 ~~l~l~aa~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~g~~~~l-~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi  251 (275)
                      .+..+.+.+..++..++.|+..+    +.+ ++....++.-.+.+.++ |.....+++...  ...+++.....+++..+
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv  243 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSV  243 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHH
Confidence            99999999999999999999984    244 58888888888888888 776654443210  00011112233444443


Q ss_pred             HHHH---HHHHHHhccCccccc
Q 023937          252 VALL---IHGHVTRRDLFMFPC  270 (275)
Q Consensus       252 ~~t~---l~~~~i~~~~~~~~~  270 (275)
                      ..-.   ..++.++|.+|+.=+
T Consensus       244 ~~f~~Nls~f~~ig~tSalT~~  265 (316)
T KOG1441|consen  244 LAFLLNLSAFLVIGRTSALTYS  265 (316)
T ss_pred             HHHHHHHHHHHHHcccCchhhh
Confidence            3333   778899999987543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.60  E-value=9.9e-05  Score=66.56  Aligned_cols=208  Identities=12%  Similarity=0.100  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCC------CCHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN---RTRPP------LTVSIICK   73 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~~l~~~~~~~~~~---~~~~~------~~~~~~~~   73 (275)
                      -++.++...+-++...+..|..-..+   +.|.+.++.-=++-.++ -....+...|+   +..+.      .++++...
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            36677778888999899998876655   56777777665555555 44444433211   11011      13445556


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCC
Q 023937           74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (275)
Q Consensus        74 ~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  153 (275)
                      +..-+++.++.+.++|.+..+.+++.-.+...+--+.++++..+++++|++++      ||.++++..+|+.++.....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            66666666777779999999999999999999999999999999999999999      999999999999887522211


Q ss_pred             cccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHHHHhc
Q 023937          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAE  229 (275)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~  229 (275)
                      .   -+++      .+...++...|...++.+++.-++-.++..|..|+-+.+ ...+.-..++|.+..+...+..+
T Consensus       169 ~---~~a~------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d  236 (345)
T KOG2234|consen  169 P---TGAK------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD  236 (345)
T ss_pred             C---CCcc------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            0   0000      023345678999999999999999999999998764433 33344444566665555554444

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.59  E-value=2.3e-06  Score=75.33  Aligned_cols=131  Identities=18%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C   82 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~   82 (275)
                      .+....++++++|+.+.+..|...  +.++..... +.+...... ..+.... .+ .  ...+.+.+......|+++ .
T Consensus       154 ~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~--~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         154 LGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLL-LLLFFLS-GF-G--APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH-HHHHHhc-cc-c--ccCCHHHHHHHHHHHHHHHH
Confidence            567788999999999999999775  367777777 555523333 3332221 11 1  124566778888999988 5


Q ss_pred             HHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        83 ~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ..+.+++.++++.+++.++.+..+.|++..++++++++|+++.+      +++|.++.+.|+.+..
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999      9999999999997764

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.51  E-value=1.2e-08  Score=87.50  Aligned_cols=231  Identities=14%  Similarity=0.121  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023937           11 VAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLY   89 (275)
Q Consensus        11 l~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (275)
                      ++..++=+.++...-.+ +.+++ |..=.|..+..-++. -.|+..++++ .  -+..+++   .+++++...-++.+..
T Consensus        25 iLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~-~--~~~~~~h---Yilla~~DVEaNy~vV   96 (336)
T KOG2766|consen   25 ILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRRK-Y--IKAKWRH---YILLAFVDVEANYFVV   96 (336)
T ss_pred             HHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhhH-H--HHHHHHH---hhheeEEeecccEEEe
Confidence            33434444444433333 33343 666677777777777 7777766432 1  1223332   5566776666677777


Q ss_pred             HhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCC
Q 023937           90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELR  169 (275)
Q Consensus        90 ~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~  169 (275)
                      .+.+||+-+....+-.-.-..+.+++++++|.|-++.      |..|+++|+.|+.+++..+   +.         .+|+
T Consensus        97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD---V~---------agd~  158 (336)
T KOG2766|consen   97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD---VH---------AGDR  158 (336)
T ss_pred             eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee---ec---------cccc
Confidence            8999999999999876555566778999999999888      9999999999998887533   11         1224


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHHHHHH
Q 023937          170 SPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGC  248 (275)
Q Consensus       170 ~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~  248 (275)
                      .++.+...||.+++++|-+||..++....+.|+.| ....+....++|+++..+- .+++.. ...  .+++.+  ...|
T Consensus       159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t--l~w~~~--i~~y  232 (336)
T KOG2766|consen  159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST--LHWDSA--IFLY  232 (336)
T ss_pred             cCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee--EeehHH--HHHH
Confidence            45667789999999999999999999999999887 5888999999999997766 444442 211  122222  2334


Q ss_pred             HHHHHHH-----HHHHHHhccCcccccccC
Q 023937          249 SHFVALL-----IHGHVTRRDLFMFPCISH  273 (275)
Q Consensus       249 ~gi~~t~-----l~~~~i~~~~~~~~~~~~  273 (275)
                      +++.-+.     +....++..+++...++.
T Consensus       233 l~f~L~MFllYsl~pil~k~~~aT~~nlsl  262 (336)
T KOG2766|consen  233 LRFALTMFLLYSLAPILIKTNSATMFNLSL  262 (336)
T ss_pred             HHHHHHHHHHHHhhHHheecCCceEEEhhH
Confidence            4422222     334567777777766654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.44  E-value=1.7e-06  Score=66.37  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ...++.+ ..++.++..++++.|.+.+..+.++.|+++.+++++++|||++++      |++|+++.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444455 778899999999999999999999999999999999999999999      9999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.43  E-value=4.2e-06  Score=71.92  Aligned_cols=134  Identities=15%  Similarity=0.088  Sum_probs=111.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (275)
                      |..+..+.+.+..+|..+-+..|+.-+. .+.-.=+..-+.+++++ .+|+-.-....   .-.+++.+...+..++++ 
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSS  220 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSS  220 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhc
Confidence            3456778889999999999999988543 56677788889999999 99986532221   224555566667888888 


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      .+.+.+-..++++.|...-++++.++|.+..+.++++++|.++..      ||.+++..+++..-.
T Consensus       221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999      999999888877543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.38  E-value=2.1e-05  Score=68.60  Aligned_cols=197  Identities=12%  Similarity=0.097  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHhhhccCCCC----------CC--CHHHHH
Q 023937           12 AVECLEVGSSTLNKAAMN---KGTS----DFVLIVYSNAFAAIFILLPSTFIYYRNRTRP----------PL--TVSIIC   72 (275)
Q Consensus        12 ~~~~~wg~~~~~~k~~~~---~~~~----p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~----------~~--~~~~~~   72 (275)
                      +..+.-+.+.+++|.+-+   +|-|    |+.....-|+-=+.+ +..+.+++.|.....          ..  +.+. +
T Consensus        10 imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~   87 (372)
T KOG3912|consen   10 IMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-V   87 (372)
T ss_pred             hhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc-c
Confidence            344456677888887642   1233    555555555555567 777766655432210          00  1111 1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccC
Q 023937           73 KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG  152 (275)
Q Consensus        73 ~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~  152 (275)
                      ..+.-+++......+.+.|+.+|+++.-..+-...-+|+.+++.-+++.+++.+      ||.|+....+|++.+...+ 
T Consensus        88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-  160 (372)
T KOG3912|consen   88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-  160 (372)
T ss_pred             eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-
Confidence            112234444666777889999999999999999999999999999999999999      9999999999997764221 


Q ss_pred             CcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHH
Q 023937          153 PALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVAL  226 (275)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~  226 (275)
                        +..-    ++   ...+..+...||++.+++-+.-|+..++-.|..++.+ +|.....|+.++|.+.+...+.
T Consensus       161 --~~~~----~~---p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i  226 (372)
T KOG3912|consen  161 --VHLV----TD---PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI  226 (372)
T ss_pred             --cccc----cC---CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence              1100    00   0112245679999999999999999999998887643 4799999999999665444433

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.24  E-value=2.7e-05  Score=61.24  Aligned_cols=117  Identities=16%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (275)
                      .+++.+++..++-+...++-|..+++ .++...... . ...+. +     .  .  . |       ...++.|+.+ .+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-~-----~--~--~-p-------~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-A-----F--G--L-A-------LRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-H-----H--h--c-c-------HHHHHHHHHHHHH
Confidence            36777888888888889999998865 444332221 1 11111 0     0  1  0 1       2356778877 88


Q ss_pred             HHHHHHHhhcccCccchhhhccchHHHHHHHHHH--HhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ++.+|..++++.+.+.+.-+.+..|..+.+.++.  +++|+++++      |++|+++.++|+.++.
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998888888875  799999999      9999999999998875

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00057  Score=60.88  Aligned_cols=226  Identities=11%  Similarity=0.062  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 023937           14 ECLEVGSSTLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVG   91 (275)
Q Consensus        14 ~~~wg~~~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g   91 (275)
                      ++.--...+..|..+.+ ++| ...+...+.....+. +...-..  |--+.+..+++..++++-..++-.+....-..+
T Consensus        21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~s   97 (314)
T KOG1444|consen   21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRL--GLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKS   97 (314)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHh--ceeecCCcChHHHHHHccHHHHHHHHHHHcccc
Confidence            33344455677887765 233 234445888887776 5443222  111225567777777777777766666666778


Q ss_pred             hcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCC
Q 023937           92 IGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP  171 (275)
Q Consensus        92 ~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~  171 (275)
                      ++|.+...-.++=+..|+++.+....+++.+.+.+      .+.++...++|...-...+                    
T Consensus        98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d--------------------  151 (314)
T KOG1444|consen   98 LKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTD--------------------  151 (314)
T ss_pred             ccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcccc--------------------
Confidence            99999999999999999999999999999777777      9999999988886544211                    


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCC------CCcccccCcchHH
Q 023937          172 QKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN------PNSWRLKPDTELI  244 (275)
Q Consensus       172 ~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~------~~~~~~~~~~~~~  244 (275)
                      ..-...|-.|.+...++-+.+.+..|+-.+.-+ +...+++|..++..........++|+-      ..+|..  ...+.
T Consensus       152 ~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~  229 (314)
T KOG1444|consen  152 LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLV  229 (314)
T ss_pred             ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHH
Confidence            111234889999999999999999998765321 236778899999998888777776651      112221  12356


Q ss_pred             HHHHHHHHHHH---HHHHHHhccCccccc
Q 023937          245 AIGCSHFVALL---IHGHVTRRDLFMFPC  270 (275)
Q Consensus       245 ~l~~~gi~~t~---l~~~~i~~~~~~~~~  270 (275)
                      .+...|+.+-+   .-.|+.+..+++..+
T Consensus       230 ~~~lScv~gf~isy~s~~ct~~~SAtT~t  258 (314)
T KOG1444|consen  230 VMLLSCVMGFGISYTSFLCTRVNSATTTT  258 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccee
Confidence            67777777777   666777777666543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.02  E-value=0.0023  Score=56.36  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937           68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (275)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (275)
                      .+.+...+..|++-.+.+...+.++++.+.+.+.-+.. .+=+.+.+.++++++|--+.+++.  .-..++++.++|+.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence            36667777777777899999999999999999999885 555678889999999977766211  134578888889877


Q ss_pred             hhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 023937          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV  215 (275)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~  215 (275)
                      .+..+.++            ++.++..+..-|....+.+++.|..|.+..|-  .+.+ +.....-|.+
T Consensus       120 ts~~~~~~------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPqai  173 (269)
T PF06800_consen  120 TSYQDKKS------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQAI  173 (269)
T ss_pred             hccccccc------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHHHH
Confidence            65432221            00112345567999999999999999999775  3444 4655555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.00  E-value=2.4e-05  Score=64.97  Aligned_cols=97  Identities=21%  Similarity=0.264  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (275)
                      ...++.|..+++..++++++.+..+.-.|+.+++++.+++|+...      +.++.++++.|++++...+.         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN---------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN---------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc---------
Confidence            567889999999999999999999999999999999999999999      99999999999987753221         


Q ss_pred             CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023937          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE  202 (275)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~  202 (275)
                               .......|..+...+++.-|+|-|+-|+...+
T Consensus       129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     12345789999999999999999999998754

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.99  E-value=0.00033  Score=62.00  Aligned_cols=171  Identities=16%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHH
Q 023937           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSI-ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF  110 (275)
Q Consensus        34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~  110 (275)
                      |..++....++=.++ ........+++..  +-..+|++ +.+..-.|+..+..-.+-.|+++|++.+.-+..=.+.++|
T Consensus        45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence            777777777665555 3333332222211  01245543 3344455555566777888999999999988888999999


Q ss_pred             HHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHH
Q 023937          111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS  190 (275)
Q Consensus       111 ~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a  190 (275)
                      +.+.+.++.-||.++.      -..-+.+..+|+.+.+ +|..                   +-+..|-.++++++++-+
T Consensus       124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT-------------------qf~i~Gf~lv~~aS~~sG  177 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST-------------------QFNIEGFFLVLAASLLSG  177 (349)
T ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc-------------------ceeehhHHHHHHHHHhhh
Confidence            9999999988999988      7776777777776654 3322                   234567777777776655


Q ss_pred             HHHHHHHHHHhhc----CchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 023937          191 LLYIVQTSIIREY----PEELMATFICCVFVTIQSTVVALIAERN  231 (275)
Q Consensus       191 ~~~v~~k~~~~~~----~~~~~~~~~~~~~g~~~~l~~~~~~~~~  231 (275)
                      +-=.+.+.+.++.    ++|++.+....-...+..+|..+.+|++
T Consensus       178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            5544455554432    2467777777777777778888888874

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.98  E-value=0.00019  Score=65.35  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=101.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCHHHHHHHHHHHHH
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP--LTVSIICKIFGLGLI   80 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~   80 (275)
                      +.++-+.++.+++++|.+.+.-+...++ .|+.++..+=-+.+.++ ..+.....+++.. .+  .+.+.....+.-++.
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i-~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGI-ESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhh-hccCCChhhHHHHHHHHHH
Confidence            3567889999999999999999998876 89888888877788877 7776655554322 22  333332222222222


Q ss_pred             HHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        81 ~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      .+..+.+.-..+++++|+...+=.-+..+++.+.+.+++++++++.      ..+|.++.+.|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            2455555566788888876666556778899999999999999999      99999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.00027  Score=60.41  Aligned_cols=214  Identities=11%  Similarity=0.037  Sum_probs=137.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHH
Q 023937           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI  113 (275)
Q Consensus        34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~l  113 (275)
                      ...++++++..-.++ .=.+..++++.+. .+.  +.+.. ...++-..+++..-..++++.|=-...+=-++-|+=+.+
T Consensus        53 alaLVf~qC~~N~vf-Akvl~~ir~~~~~-D~t--~~~~Y-aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi  127 (337)
T KOG1580|consen   53 ALALVFFQCTANTVF-AKVLFLIRKKTEI-DNT--PTKMY-AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI  127 (337)
T ss_pred             HHHHHHHHHHHHHHH-HHhheeecccccc-cCC--cchHH-HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence            466777777777666 4333333322111 111  11111 112221245666667788888777666666788988899


Q ss_pred             HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (275)
Q Consensus       114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  193 (275)
                      +++++.|++-+|+      +...+...++|+++. +++.....+            ........|+++.+.+--.=++..
T Consensus       128 lGVl~~~KsY~w~------kY~cVL~IV~GValF-mYK~~Kv~g------------~e~~t~g~GElLL~lSL~mDGlTg  188 (337)
T KOG1580|consen  128 LGVLFAHKSYHWR------KYCCVLMIVVGVALF-MYKENKVGG------------AEDKTFGFGELLLILSLAMDGLTG  188 (337)
T ss_pred             eehhhhcccccHH------HHHHHHHHHHHHHHh-hccccccCC------------CcccccchHHHHHHHHHHhcccch
Confidence            9999999999999      999999999999876 466443322            233456789999999988888888


Q ss_pred             HHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCC--CCcccccCcchHHHHHHHHH---HHHHHHHHHHhccCcc
Q 023937          194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN--PNSWRLKPDTELIAIGCSHF---VALLIHGHVTRRDLFM  267 (275)
Q Consensus       194 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~gi---~~t~l~~~~i~~~~~~  267 (275)
                      ..+.|..+.+. ....++++..+++.+.+....++.++-  +.....-++..|+-+...++   .+..+....++.-||.
T Consensus       189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPL  268 (337)
T KOG1580|consen  189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPL  268 (337)
T ss_pred             hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCe
Confidence            88888766543 236889999999998877666665541  11000012233444444444   4444788888888988


Q ss_pred             cccc
Q 023937          268 FPCI  271 (275)
Q Consensus       268 ~~~~  271 (275)
                      .-|+
T Consensus       269 tCSi  272 (337)
T KOG1580|consen  269 TCSI  272 (337)
T ss_pred             eEEE
Confidence            7665

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.72  E-value=0.01  Score=54.21  Aligned_cols=177  Identities=12%  Similarity=0.039  Sum_probs=111.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--hhhcc--CCCCCCCHHHHHHHHHH
Q 023937            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRN--RTRPPLTVSIICKIFGL   77 (275)
Q Consensus         3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~   77 (275)
                      ...+++..+++.++||+.+.-.|.. +. -| ++.-.. -.+++.+  +.|+..  ...+.  ......+.+.+...++-
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            4558889999999999999999984 32 33 222211 1111221  222111  10110  00022455666666677


Q ss_pred             HHHHHHHHHHHHHhhcccCccchhhhc-cchHHHHHHHHHHHhcccc---cccccccchhhHHHHHHHHHHHHhhhccCC
Q 023937           78 GLISCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (275)
Q Consensus        78 g~~~~~~~~~~~~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  153 (275)
                      |++-...+..++.++++.+.+.+--+. .++=+...+++.++++|=-   +.+  -.+.-.+|+++.++|+++.......
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            777688999999999999999988875 5777888888888887532   222  1223788999999999887642111


Q ss_pred             cccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (275)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  193 (275)
                      ..       ..+.+|++...+..-|.+.++++.+.++.|.
T Consensus       158 k~-------~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 KE-------RKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             cc-------cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            00       0000011233467889999999999999999

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.0045  Score=54.92  Aligned_cols=210  Identities=14%  Similarity=0.141  Sum_probs=135.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhc---cchHH
Q 023937           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIV---DLTPA  109 (275)
Q Consensus        33 ~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~---~~~Pl  109 (275)
                      ++..+++.+-+++.+. -...  ...++..  ...++.+......++-+.+...+.+.+++|.+=-. .++.   -..|+
T Consensus        50 ~~~fL~~~q~l~~~~~-s~~~--l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPt-q~LaKscKmIPV  123 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLV-SYAM--LKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPT-QTLAKSCKMIPV  123 (327)
T ss_pred             ccHHHHHHHHHHHHHH-HHHH--Hhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchH-HHHHHHhhhhHH
Confidence            4778888888888877 4332  2222221  12233446667778877888999999999985432 2232   35664


Q ss_pred             HHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHH
Q 023937          110 FTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL  189 (275)
Q Consensus       110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~  189 (275)
                        .+.+.++.+.|.+.+      +.+...+.-.|+.+....+...  +    ++     .....+..+|..++...-+.=
T Consensus       124 --mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----~~-----~~g~~ns~~G~~Ll~~~L~fD  184 (327)
T KOG1581|consen  124 --MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----SS-----KSGRENSPIGILLLFGYLLFD  184 (327)
T ss_pred             --HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----cc-----ccCCCCchHhHHHHHHHHHHH
Confidence              456889999999999      9999999999987665432211  0    00     112235678988888887777


Q ss_pred             HHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCc--ccccCcchHHHHHHHHHHHHH---HHHHHHhc
Q 023937          190 SLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNS--WRLKPDTELIAIGCSHFVALL---IHGHVTRR  263 (275)
Q Consensus       190 a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~t~---l~~~~i~~  263 (275)
                      ++-+..+.++.++.+ ++.+++++..+++.+......+.-+.....  ..-.++..+.-++.....+++   +.++.+|+
T Consensus       185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~  264 (327)
T KOG1581|consen  185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIER  264 (327)
T ss_pred             hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhh
Confidence            788888888877543 358999999999999987774332221111  111122334444444544444   77788888


Q ss_pred             cCcc
Q 023937          264 DLFM  267 (275)
Q Consensus       264 ~~~~  267 (275)
                      -||.
T Consensus       265 FGsl  268 (327)
T KOG1581|consen  265 FGSL  268 (327)
T ss_pred             cccH
Confidence            8875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.68  E-value=0.00092  Score=60.15  Aligned_cols=136  Identities=19%  Similarity=0.216  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHh--hhccC-C--CCCCCHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNR-T--RPPLTVSIICKIFGLGL   79 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~--~~~~~-~--~~~~~~~~~~~~~~~g~   79 (275)
                      ++++++++.++-|......+..+++ +.++.+..++-...+.+. .++....  .+.-. .  ....+++.+..++..++
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            7888999999999999999988853 688999999999999988 7766655  22111 0  00112234455556666


Q ss_pred             HHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        80 ~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      .+...+.+.+.-.++.++...+++..+--+++.+++.+++++++++.      +|+|+++.+.|..+-.
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            66677777778899999999999999999999999999999999999      9999999999997654

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.60  E-value=0.001  Score=58.55  Aligned_cols=130  Identities=12%  Similarity=-0.027  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC   83 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   83 (275)
                      .|+...+++..+-+..+..+.|..   ++||....+=+.+--.+. -..+..+.+++.+ .+.+    .+-+..|++-..
T Consensus       137 ~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~~~~~~-~k~~----~~nil~G~~w~i  207 (269)
T PF06800_consen  137 KKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFSKKPFF-EKKS----WKNILTGLIWGI  207 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhccccccc-ccch----HHhhHHHHHHHH
Confidence            567888888999998888888864   378888777665544433 3333333222111 2222    344566777678


Q ss_pred             HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 023937           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA  144 (275)
Q Consensus        84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  144 (275)
                      .+.+++.+.+..+.+.+-.+..+.++...+-+.+++||+-++|++  +...+|+++.+.|.
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~  266 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGA  266 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhh
Confidence            888899999999999999999999999999999999999888832  12444555555554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.00052  Score=59.91  Aligned_cols=215  Identities=13%  Similarity=0.049  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCC---CCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchH
Q 023937           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPL--TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP  108 (275)
Q Consensus        34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~---~~~~--~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~P  108 (275)
                      |..+...+.++...+ =+.+.....+-.+   .++.  +.+....+.-+++.-...-.+-..++++.+.+---+=-.+.-
T Consensus        61 plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            788888888877665 4444333222111   1222  222111222222211112222345667776665444446778


Q ss_pred             HHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 023937          109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFF  188 (275)
Q Consensus       109 l~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~  188 (275)
                      +|+.++.+.++|||=+.+      ...+..+.+.|-.+ -.++.                ...+.-...|.++...|+++
T Consensus       140 vFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-GvdqE----------------~~~~~ls~~GvifGVlaSl~  196 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-GVDQE----------------GSTGTLSWIGVIFGVLASLA  196 (347)
T ss_pred             hHHHHhHHhhcccccccc------cceeehhheehhee-ccccc----------------cccCccchhhhHHHHHHHHH
Confidence            899999999999998877      55555555544422 11111                11233457899999999999


Q ss_pred             HHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccC-cchHHHHHHHHHHHHH---HHHHHH
Q 023937          189 LSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAERNPNSWR--LKP-DTELIAIGCSHFVALL---IHGHVT  261 (275)
Q Consensus       189 ~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~--~~~-~~~~~~l~~~gi~~t~---l~~~~i  261 (275)
                      -|++.+..||.....++. ...+.|..+.+.++++|...+.++-..-+.  +.+ ...|..+...|+++-.   ...|.|
T Consensus       197 vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QI  276 (347)
T KOG1442|consen  197 VALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQI  276 (347)
T ss_pred             HHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEE
Confidence            999999999876554433 678889999999999999887765322222  111 1235556666777666   556788


Q ss_pred             hccCccccccc
Q 023937          262 RRDLFMFPCIS  272 (275)
Q Consensus       262 ~~~~~~~~~~~  272 (275)
                      +-.+|+.=.+|
T Consensus       277 K~TSplThnIS  287 (347)
T KOG1442|consen  277 KVTSPLTHNIS  287 (347)
T ss_pred             Eecccceeeec
Confidence            88777764443

>TIGR00688 rarD rarD protein

Probab=97.34  E-value=0.0045  Score=54.04  Aligned_cols=105  Identities=10%  Similarity=-0.032  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-CCHHHHHHHHHHHHHHHHHHHH
Q 023937            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP-LTVSIICKIFGLGLISCCVQTC   87 (275)
Q Consensus         9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~   87 (275)
                      ..+.++++|+.+.+..|...++  ++......... .... ..+..... ....... ...++|..++..|+.+.+.+.+
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l  224 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPV-AIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLA  224 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHH-HHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            4677899999999999886432  33222222211 1111 11111111 1111011 1224677888888777889999


Q ss_pred             HHHhhcccCccchhhhccchHHHHHHHHHHH
Q 023937           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALIS  118 (275)
Q Consensus        88 ~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~  118 (275)
                      ++.|+++.+++.++.+.+++|+++.+++.+.
T Consensus       225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.18  E-value=0.015  Score=51.48  Aligned_cols=130  Identities=10%  Similarity=0.003  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023937           10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCL   88 (275)
Q Consensus        10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (275)
                      .+..++.||.++..=|..   .+|+.+=...-...-.+. -+.+.+...-... ....+.+.+..+...|....+.-.++
T Consensus       153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf  228 (293)
T COG2962         153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHH
Confidence            345677888877776654   377777666666655555 4444433322110 01124456677888899889999999


Q ss_pred             HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      ..|-+++|-+..+.+.|.+|....+++.++++|+++.-      |..+-++.-+|+++...
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999      99999999999887653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.03  E-value=0.043  Score=50.25  Aligned_cols=144  Identities=13%  Similarity=-0.036  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhhhcc-CCC----CCC-C
Q 023937            4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRN-RTR----PPL-T   67 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~~l~~~~~~~~~~-~~~----~~~-~   67 (275)
                      .|+.+.++++.+..+...       +..+.....+.+|.....-.+.   ++.+++...++.+..+| +..    .+. +
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            567888888888888877       5555544456777666555554   44444244444332111 110    111 2


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhh---hccchH-HHHHHHHHHHhcccccccccccchhhHHHHH
Q 023937           68 ----VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSA---IVDLTP-AFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (275)
Q Consensus        68 ----~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~---l~~~~P-l~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l  139 (275)
                          .+......+.|++-...+.++.+|.+..+...+.+   +..-.+ ++..+-+ +++||+-+-.+|..+.-++|+++
T Consensus       253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG-i~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG-LVLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh-hhhhhccCCCccchhHHHHHHHH
Confidence                23333334555555677888888888887666655   663444 5555444 46999988555566778999999


Q ss_pred             HHHHHHHhh
Q 023937          140 SIAGALTVT  148 (275)
Q Consensus       140 ~~~Gv~ll~  148 (275)
                      .+.|..++.
T Consensus       332 iI~g~~lig  340 (345)
T PRK13499        332 IILAANIVG  340 (345)
T ss_pred             HHHHHHHHh
Confidence            999998775

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.00  E-value=0.003  Score=49.00  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhhcccCccchhhhc-cchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ..++.++..++++.|.+.+=.+. ...-+.+.+++.++++|++++.      +++|+.+.++|++.+-
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            67888899999999999998774 6888899999999999999999      9999999999998764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.99  E-value=0.0038  Score=47.67  Aligned_cols=65  Identities=25%  Similarity=0.302  Sum_probs=55.8

Q ss_pred             HHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        78 g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      .+.+ .+++.++..++++.|.+.+=.+ ....-+.+.+++.++++|++++.      +++|+.+.++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444 6778888889999999988776 45788888999999999999999      9999999999998874

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.97  E-value=0.0033  Score=56.81  Aligned_cols=137  Identities=14%  Similarity=0.170  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHhhhccC----CCCCCCHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNR----TRPPLTVSIICKIF   75 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~l~~l~-~~~~~~~~~~----~~~~~~~~~~~~~~   75 (275)
                      ..+.+..+.+.+..+.-.++.|..+.   +.+|+..+..+..-++..+ ++ |+....+...    .....+... ....
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~  239 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LILL  239 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHHH
Confidence            45778888899999999999999983   3589999999999999999 88 9876543321    101223332 3344


Q ss_pred             HHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        76 ~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ..+.+....+..-|+.+.+++|-.-++.-..==.++...++++++||+++.      +..|..++++|+.+-.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            444555777888899999999998888876555555667888999999999      9999999999998654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.97  E-value=0.0029  Score=48.39  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 023937           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI-SCCVQTCLY   89 (275)
Q Consensus        11 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   89 (275)
                      +++.++||.+.++.|++... .++..-.. |..--... +     +  +       +++...     .+. +-.....|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-L-----l--~-------n~~y~i-----pf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-L-----L--L-------NPKYII-----PFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-H-----H--H-------hHHHHH-----HHHHHHHHHHHHH
Confidence            45789999999999999754 44333221 42222221 1     1  1       122111     222 255667888


Q ss_pred             HhhcccCccchhhhc-cchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        90 ~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      ..+.+.+-+.+.-+. .+.=+++.+.++++.+|..+++      +++|+.+.++|+.++
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            899999999999998 4666788888877777777777      999999999998754

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.91  E-value=0.025  Score=43.11  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      ..++.+.-.++++.|.+.+=.+ ....-+.+.+++.++++|++++.      |++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            5777888889999999988665 45888888999999999999999      999999999999765

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.0047  Score=46.56  Aligned_cols=60  Identities=18%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      ..++.+.-.++|+.|.+.|=.+ ....-+.+.+.++++++|+++..      +++|+.+.++|++.+
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            6778888899999999988665 56888899999999999999999      999999999999876

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.78  E-value=0.0019  Score=49.22  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCcchHHHHHHHHHHHHH----HHHHHH
Q 023937          187 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTELIAIGCSHFVALL----IHGHVT  261 (275)
Q Consensus       187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~gi~~t~----l~~~~i  261 (275)
                      ++|+.+.+..|+..++.| +...+++.+..+.+ .++...+.+... .++   +...+....+.|++++.    ++.+++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNL---SPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCC---ChhhhhhhhHhhccceehHHHHHHHHH
Confidence            478999999999999887 69999999999998 666666555432 222   22345556666766433    899999


Q ss_pred             hccCcccccc
Q 023937          262 RRDLFMFPCI  271 (275)
Q Consensus       262 ~~~~~~~~~~  271 (275)
                      ++.++..++.
T Consensus        76 ~~~~~~~~~~   85 (126)
T PF00892_consen   76 KYISASIVSI   85 (126)
T ss_pred             HhcchhHHHH
Confidence            9999887654

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.75  E-value=0.04  Score=43.83  Aligned_cols=127  Identities=16%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023937            9 VMVAVECLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (275)
Q Consensus         9 ~~l~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (275)
                      ..+++-++-+....+.-..-++ . +|..-.++-+..+.+. +..+....+++.. ++.+... ++...-|++|...-.+
T Consensus         5 la~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V~~   80 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFVLS   80 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHHHH
Confidence            3444555555555555544343 5 4999999999999999 7777766544211 2221111 2344567777777888


Q ss_pred             HHHhhcccCccchhhhccc-hHHHHHHHHHH----HhcccccccccccchhhHHHHHHHHHHH
Q 023937           88 LYVGIGYSSPTLSSAIVDL-TPAFTFILALI----SRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (275)
Q Consensus        88 ~~~g~~~~~a~~a~~l~~~-~Pl~~~ll~~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  145 (275)
                      .....++.+++.+..+.-+ +-+...++.++    .-++|++++      |.+|+++.++|+.
T Consensus        81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI  137 (138)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence            8889999999998887654 44455555554    245777777      9999999999985

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.68  E-value=0.021  Score=52.12  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYR--NRTRPPLTVSIICKIFGLG   78 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~g   78 (275)
                      ..+-++.+++++++|.+.++.|+-.+++   +|-..+-.+--++..++ +.|..+...+  .++.+-.+..+...+++.+
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            5578889999999999999999887542   56555555555667777 7765544322  2222333445556677888


Q ss_pred             HHH-HHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           79 LIS-CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        79 ~~~-~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      +++ ...-++|.+|.-.|++-.+.+=+. +.| .+.+...++.+.+.++.      ..+|.+..++|-+.+..
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIP-LA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIP-LAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeee-HHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence            888 899999999999999988888665 555 55667777877888877      99999999999877653

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.67  E-value=0.0092  Score=45.16  Aligned_cols=60  Identities=10%  Similarity=0.043  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      ..++.+...++++.|.+.+=.+ ....-+.+.+++.++++|++++.      +++|+.+.++|++.+
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            6778888889999999988665 45888899999999999999999      999999999999876

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.61  E-value=0.014  Score=46.47  Aligned_cols=94  Identities=14%  Similarity=0.100  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHHHHHHHHHHHHHHhcCCCC-c-c-ccc------Ccch
Q 023937          178 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERNPN-S-W-RLK------PDTE  242 (275)
Q Consensus       178 G~~l~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~-~-~-~~~------~~~~  242 (275)
                      |.++.+.|.++.+++.++.|+..++      .-++..+..+....+.+.+++...+.|+... + . ...      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5688999999999999999998766      2246899999999999999999888776421 1 1 000      1122


Q ss_pred             HHHHHHHHHHHHH---HHHHHHhccCcccccc
Q 023937          243 LIAIGCSHFVALL---IHGHVTRRDLFMFPCI  271 (275)
Q Consensus       243 ~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~  271 (275)
                      +..++..|+.+-.   ...+.+++.+|+..++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v  112 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSV  112 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHH
Confidence            4445555555444   7888999999986553

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.52  E-value=0.024  Score=51.04  Aligned_cols=69  Identities=23%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      .+.|+.. .....+.+.++...|++..+-+..+.-++..+++..++|||++++      ++.|.++++.|..+++.
T Consensus        53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            3445544 566778889999999999999999999999999999999999999      99999999999987754

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.41  E-value=0.0086  Score=44.25  Aligned_cols=52  Identities=15%  Similarity=0.027  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhcccCccchhh-hccchHHHHHHHHHHHhcccccccccccchhhHHHHH
Q 023937           82 CCVQTCLYVGIGYSSPTLSSA-IVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~-l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l  139 (275)
                      ..++.++..++++.|.+.+=. ...+..+.+.+++..+++|+++++      |++|+.+
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            677888999999999999955 457999999999999999999999      9998876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.97  E-value=0.083  Score=45.17  Aligned_cols=221  Identities=11%  Similarity=0.077  Sum_probs=134.6

Q ss_pred             HHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 023937           21 STLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT   98 (275)
Q Consensus        21 ~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~   98 (275)
                      .+..|..++. |++ -+.+.+.+.++..+. +..+-..+-.+.  +..+.   +.++..+++.....+.--.+++|.+..
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~-l~iLk~l~~~~f--R~t~a---K~WfpiSfLLv~MIyt~SKsLqyL~vp   95 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVG-LLILKFLRLVEF--RLTKA---KKWFPISFLLVVMIYTSSKSLQYLAVP   95 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHH-HHHHHHHhHhhe--ehhhh---hhhcCHHHHHHHHHHhcccceeeeeee
Confidence            3444554432 232 367778888877777 554433221111  11122   334444554433334444688999999


Q ss_pred             chhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHH
Q 023937           99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG  178 (275)
Q Consensus        99 ~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (275)
                      .-+++=++.-+.++..-.++++.|++..      +..+-++.+..-+.-.+.+.+..             ....+..+.|
T Consensus        96 iYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~-------------~~~~~~lN~G  156 (309)
T COG5070          96 IYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQAS-------------AFKAQILNPG  156 (309)
T ss_pred             HHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHH-------------HHHhcccCCc
Confidence            9999999998888888899999999988      88777776655543332221100             0011245678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCccc-ccCcchHHHHHHHHHHHH
Q 023937          179 GLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR-LKPDTELIAIGCSHFVAL  254 (275)
Q Consensus       179 ~~l~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~l~~~gi~~t  254 (275)
                      -+|+..-+++-+.+....|+-.+  +..+ ...++|..+.+..+++.+..++|+- +.+.. .-+...+.++...|+.+-
T Consensus       157 Y~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv  235 (309)
T COG5070         157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV  235 (309)
T ss_pred             eEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence            88888899999999988887654  2233 6778999999998888888877752 21111 112233556666666544


Q ss_pred             H---HHHHHHhccCcc
Q 023937          255 L---IHGHVTRRDLFM  267 (275)
Q Consensus       255 ~---l~~~~i~~~~~~  267 (275)
                      +   .-.|..+-.+.+
T Consensus       236 giSy~saWcvrVtSST  251 (309)
T COG5070         236 GISYCSAWCVRVTSST  251 (309)
T ss_pred             hhhhccceeEeehhhh
Confidence            4   555666655443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.80  E-value=0.0067  Score=52.99  Aligned_cols=134  Identities=10%  Similarity=0.067  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (275)
                      +.+..+..++.-+..++..|..-++ .+....+.+=..++.+. -...+.... +...|+ ..|++.....+|++|++.+
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~-s~I~~~~ig-~~~lP~-cgkdr~l~~~lGvfgfigQ  267 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVV-SLIGCASIG-AVQLPH-CGKDRWLFVNLGVFGFIGQ  267 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHH-HHHHHhhcc-ceecCc-cccceEEEEEehhhhhHHH
Confidence            3556666777777778888765333 66666555555556555 333332222 222243 3456677788999999999


Q ss_pred             HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      .+...|++.=-++..+++.++.-+++.+--.++++|-.++.      .|.|+++.+...+....
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999999988888      99999888877766653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.66  E-value=0.0041  Score=53.67  Aligned_cols=172  Identities=12%  Similarity=0.022  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (275)
                      .++..++=++.||....++...   +=+|.+=..--.+-|.++ -+.+.++  .  + |..+.+.+..-+.-|++-...+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~--~--~-p~~T~~~~iv~~isG~~Ws~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF--V--S-PELTLTIFIVGFISGAFWSFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee--e--c-CccchhhHHHHHHhhhHhhhhh
Confidence            3556777889999987776543   234544333333333333 3333332  2  1 4566665565566666667889


Q ss_pred             HHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (275)
Q Consensus        86 ~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (275)
                      ...+.++++.+.+++.-+++ .+=+-+.+.+++.++|=-+.-|.  ..-.+++++.+.|+.+-+. ++           +
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~-~~-----------~  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSK-QD-----------R  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeee-ec-----------c
Confidence            99999999999999998875 66677888888999985544310  0122344455555543321 11           1


Q ss_pred             CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023937          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII  200 (275)
Q Consensus       165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~  200 (275)
                      ++.+.++.++.-.|....+.+++.|-.|.++.+...
T Consensus       140 ~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~  175 (288)
T COG4975         140 NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD  175 (288)
T ss_pred             ccccccChHhhhhheeeeeeeccceeeeEeeecccc
Confidence            122234445567899999999999999999977653

>COG2510 Predicted membrane protein [Function unknown]

Probab=95.22  E-value=0.31  Score=38.07  Aligned_cols=87  Identities=13%  Similarity=-0.008  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH---
Q 023937          179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL---  255 (275)
Q Consensus       179 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~---  255 (275)
                      ..+.+++|+++++..++.|--.+..| |...++.-.+...+.+..+....++-. ......+..|..+...|+-+..   
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~-~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQ-AGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCcee-cccccCcceehhhhHHHHHHHHHHH
Confidence            46889999999999999998878776 567777777777777666666555321 1111133456777777754444   


Q ss_pred             HHHHHHhccCcc
Q 023937          256 IHGHVTRRDLFM  267 (275)
Q Consensus       256 l~~~~i~~~~~~  267 (275)
                      +|+.++++-.+.
T Consensus        83 ~Yf~ALk~G~as   94 (140)
T COG2510          83 LYFRALKKGKAS   94 (140)
T ss_pred             HHHHHHhcCCcc
Confidence            888898865543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.22  E-value=0.53  Score=37.83  Aligned_cols=141  Identities=13%  Similarity=0.005  Sum_probs=80.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (275)
                      ......+..+++.++-.....+....-+.-=+|..-.++.+.++.+. +..+.+..+++.. ....++.-.+...-|++|
T Consensus         2 ~~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lG   79 (150)
T COG3238           2 MMYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLLG   79 (150)
T ss_pred             ccHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccchh
Confidence            34444555555555555555555555444225999999999999998 8877776332221 111122223344555666


Q ss_pred             HHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHH-hcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALIS-RMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~-~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      ..+-..-.....+.+++....+.- -+-+...++..+= ++++.   ++.++.+..|+++.++|+.++
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~---~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPK---RPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCc---CCCCHHHHHHHHHHHHHHHHh
Confidence            555555566677777666655543 3333444444332 22221   234444999999999995443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.3  Score=43.85  Aligned_cols=138  Identities=14%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC-CCCHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYR----NRTRP-PLTVSIICKIFGL   77 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~~~   77 (275)
                      .++|.++....+.=....+..|.-.+. +.+-+.++++..+.+.+. +.......+.    ....+ ..+...+....+-
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            457888888888888888888887754 467788999999999888 6666544432    11101 1223445666777


Q ss_pred             HHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        78 g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ++++.+-.++-++..+.+|+...++.....=..+.+...++.++++++.      ..+|+.++++|-++-.
T Consensus       235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            7777666777788999999988888875555566666666788999888      9999999999987654

>TIGR00803 nst UDP-galactose transporter

Probab=94.71  E-value=0.13  Score=43.95  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Q 023937           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (275)
Q Consensus        79 ~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  145 (275)
                      +.+...+.+..+.+++.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            334666677888999999999999999999999999999999999999      9999999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.65  E-value=0.13  Score=44.35  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937           69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      ..+..+..+++.+++.+.+.|.-+.+-++-.-+++..+--+|+++.++++++.+++.|      ||+|.++.+.|...=.
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            3445667778878889999999999999999999999999999999999999999999      9999999999986533

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.99  E-value=0.022  Score=50.99  Aligned_cols=71  Identities=18%  Similarity=0.352  Sum_probs=63.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        73 ~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      +..+.|++. ...-..-|.++.+.|++..+-+..+.-+..++++..++|||+++.      ..+|.++|++|-.+++.
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence            445667776 777788888999999999999999999999999999999999999      99999999999988764

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=93.33  E-value=0.87  Score=36.10  Aligned_cols=88  Identities=15%  Similarity=0.060  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH---
Q 023937          179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL---  255 (275)
Q Consensus       179 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~---  255 (275)
                      .++.+.+...-++...+..++.++.++|..-++..+..|.+....+..+.+++  +++...+..|+..+ -|+++..   
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG~~~V~   79 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLGVFFVL   79 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHHHHHHH
Confidence            46678888888999999999888876578989999999998888877776653  22211122333322 5666655   


Q ss_pred             HHHHHHhccCcccc
Q 023937          256 IHGHVTRRDLFMFP  269 (275)
Q Consensus       256 l~~~~i~~~~~~~~  269 (275)
                      ...+.++|.|+..+
T Consensus        80 ~~~~~vp~lG~~~~   93 (138)
T PF04657_consen   80 SNIILVPRLGAALT   93 (138)
T ss_pred             HHHHHhhhhhHHHH
Confidence            77788888887654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.32  E-value=0.96  Score=40.48  Aligned_cols=135  Identities=11%  Similarity=0.060  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCC---CCCCCHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLIS   81 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~   81 (275)
                      ++.++..-..+=|.....-+...++ .+++..+.+.-.+...+. -.......+..+.   +-+.+++.+.-++..+..+
T Consensus       173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~g  251 (327)
T KOG1581|consen  173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCG  251 (327)
T ss_pred             hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhh
Confidence            4555555555555555555555433 578888888887777776 5554332222110   1134566667788888889


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      +..|.+-|.-++.-++-.-++++.+==++..+++.+.+++++++.      +|.|+.+.+.|+.+=
T Consensus       252 avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  252 AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLE  311 (327)
T ss_pred             hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHH
Confidence            889999999999998888888999989999999999999999999      999999999888653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=92.49  E-value=0.18  Score=43.77  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=69.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHH
Q 023937           32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFT  111 (275)
Q Consensus        32 ~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~  111 (275)
                      .+...--+.-+.++++. +.-    . +++  ++. .|.-..-+.-|++-...+.+++.+-+..+.+.+=-++.+..+..
T Consensus       179 ~saiLPqAiGMv~~ali-~~~----~-~~~--~~~-~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViis  249 (288)
T COG4975         179 LSAILPQAIGMVIGALI-LGF----F-KME--KRF-NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIIS  249 (288)
T ss_pred             hhhhhHHHHHHHHHHHH-Hhh----c-ccc--cch-HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeee
Confidence            44444445556666655 221    1 111  112 23334445677777778888888989888777777777777788


Q ss_pred             HHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937          112 FILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (275)
Q Consensus       112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  148 (275)
                      .+-+.++++||-++|++.  .-++|+++.+.|+.++.
T Consensus       250 TiGGIl~L~ekKtkkEm~--~v~iGiilivvgai~lg  284 (288)
T COG4975         250 TIGGILFLGEKKTKKEMV--YVIIGIILIVVGAILLG  284 (288)
T ss_pred             ecceEEEEeccCchhhhh--hhhhhHHHHHHHhhhhh
Confidence            888889999999999442  25667777777776654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=91.78  E-value=4.7  Score=35.39  Aligned_cols=134  Identities=10%  Similarity=-0.041  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (275)
Q Consensus         6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (275)
                      +++..+++++++|++++-.|.. +. -|++.+-++-.....+. -......  + .. ++..    ...++-|.+-+..+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~-g~~v~~~--~-~~-p~f~----p~amlgG~lW~~gN   69 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLV-GLVVNLI--L-GF-PPFY----PWAMLGGALWATGN   69 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHH-HHHHHHh--c-CC-Ccce----eHHHhhhhhhhcCc
Confidence            3567889999999999999976 33 46755544444433333 2222222  2 12 3222    12233334445666


Q ss_pred             HHHHHhhcccCccchhhhccchHHH-HHHHHHH-HhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937           86 TCLYVGIGYSSPTLSSAIVDLTPAF-TFILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (275)
Q Consensus        86 ~~~~~g~~~~~a~~a~~l~~~~Pl~-~~ll~~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  151 (275)
                      .+-.-.++..+-+.+-.+-++.=+. ....+.+ +++++.+.. .......+|++++++|..+...-|
T Consensus        70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeec
Confidence            6777788999999888887764433 3333333 343332211 123568999999999988765433

The region concerned is approximately 280 residues long.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=90.08  E-value=2.6  Score=37.38  Aligned_cols=170  Identities=16%  Similarity=0.140  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCccchhhhccchHHHHHH
Q 023937           35 FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY-SSPTLSSAIVDLTPAFTFI  113 (275)
Q Consensus        35 ~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~a~~a~~l~~~~Pl~~~l  113 (275)
                      ..+.+-+|++-+.- =+++.-.... .+ ++.+.|+....  ..++ +..+.+-..+++. ++--.=-++-.-.++.+.+
T Consensus        34 NLITFaqFlFia~e-Glif~skf~~-~k-~kiplk~Y~i~--V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~  107 (330)
T KOG1583|consen   34 NLITFAQFLFIATE-GLIFTSKFFT-VK-PKIPLKDYAIT--VAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI  107 (330)
T ss_pred             eehHHHHHHHHHHh-ceeeeccccc-cC-CCCchhhhhee--hhee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence            45556666554443 2222211111 11 44555543332  2222 2333333445554 3333334444677888899


Q ss_pred             HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 023937          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGGLVLAAGSFFLSLL  192 (275)
Q Consensus       114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~  192 (275)
                      +++++.+.|-+.+      |..++++.-+|+++....+.++..+  ...++..+ +.++...+..|..+...+-+.-|.-
T Consensus       108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999      9999999999998876544432221  00111111 1234446789999888888888888


Q ss_pred             HHHHHHHHhhcC-chhHHHHHHHHHHH
Q 023937          193 YIVQTSIIREYP-EELMATFICCVFVT  218 (275)
Q Consensus       193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~  218 (275)
                      .+.+...-+|++ ++...++|.=....
T Consensus       180 giyqE~~Y~kyGKh~~EalFytH~LsL  206 (330)
T KOG1583|consen  180 GIYQETTYQKYGKHWKEALFYTHFLSL  206 (330)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhcc
Confidence            888777766643 34566666554443

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=89.41  E-value=2.1  Score=36.78  Aligned_cols=111  Identities=19%  Similarity=0.243  Sum_probs=83.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccc
Q 023937           32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP-----LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDL  106 (275)
Q Consensus        32 ~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~  106 (275)
                      ..-+.-+++..+++..+ ++.+....+. +. +.     .+...+...++-|+...+-.++--|..+-++++.-+.+..+
T Consensus       183 f~d~dtmfYnNllslPi-L~~~s~~~ed-ws-~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGAL  259 (309)
T COG5070         183 FKDFDTMFYNNLLSLPI-LLSFSFLFED-WS-PGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGAL  259 (309)
T ss_pred             cchhhHHHHhhhHHHHH-HHHHHHHhcc-CC-cchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHh
Confidence            55688899999999999 8887766543 22 21     22333445556666655666777889999999999999888


Q ss_pred             hHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937          107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (275)
Q Consensus       107 ~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  151 (275)
                      .-.-..+.+.++++|+.+..      +..++.+++..-++-...+
T Consensus       260 NKlp~alaGlvffdap~nf~------si~sillGflsg~iYavak  298 (309)
T COG5070         260 NKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             hhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999988      9999999987765555443

>TIGR00803 nst UDP-galactose transporter

Probab=88.57  E-value=3.9  Score=34.71  Aligned_cols=92  Identities=12%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             hhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCc-----------ccccCCCCCCCcCCCC
Q 023937          102 AIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPA-----------LVSMSSSSNLHNELRS  170 (275)
Q Consensus       102 ~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~~~~~~  170 (275)
                      ..-+..|+++.+.+....+||.+..      |+++.++...|++.-...+.+.           ....++    +.+...
T Consensus         9 ~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~----~~~~~~   78 (222)
T TIGR00803         9 IFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ----SSAKTL   78 (222)
T ss_pred             HHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC----CCcccc
Confidence            3456777788887887888887766      8888888888876432211110           000000    000011


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023937          171 PQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY  203 (275)
Q Consensus       171 ~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~  203 (275)
                      ..++...|....+.+.++-+...+.+++..++.
T Consensus        79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            123456787888888888788888888865543

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=86.67  E-value=18  Score=32.68  Aligned_cols=136  Identities=16%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhhhccCCC------CCCCH-HHHHH
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPLTV-SIICK   73 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~------~~~~~-~~~~~   73 (275)
                      .+.....++.++-|.-+.+.+..++++    =+|....+--.-...+. ++|..+..+.....      +..+. ..+..
T Consensus       164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            466777788888888899998888652    13666666655555666 66665544332110      11111 11112


Q ss_pred             HHHHHHHHHHH---HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937           74 IFGLGLISCCV---QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (275)
Q Consensus        74 ~~~~g~~~~~~---~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  147 (275)
                      .-..+..|..+   -..-|.=...|+.-..++..-.-=+.+.+++..+.+|+++-.      .|.|..++..|+..=
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            22222222222   233333455565555555555666778889999999999988      999999999999653

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=86.22  E-value=26  Score=32.06  Aligned_cols=179  Identities=12%  Similarity=0.053  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhc-cC---CCCCCCHHHHHHHHHHHH
Q 023937            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR-NR---TRPPLTVSIICKIFGLGL   79 (275)
Q Consensus         4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~g~   79 (275)
                      ..+.+...++.++-|+.++-.|..-+  .+=-..=....+++-+  ..|+..-.-. .+   .....+...+......|+
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            34677778899999999999998632  4422222223444443  4554432111 00   001223345566666777


Q ss_pred             HHHHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhccccc--ccccccchhhHHHHHHHHHHHHhhhccCCccc
Q 023937           80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLD--LRVQSSLAKSIGTMVSIAGALTVTLYKGPALV  156 (275)
Q Consensus        80 ~~~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~--~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~  156 (275)
                      +-.+....|-.+++|.+.+...-+ ..+.-++-.++-.++.++ .+  ..++-.+...+|++++++|++++....  ...
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG--~~K  158 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKAG--SMK  158 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHHH--Hhh
Confidence            766667777888999887765543 234444444443333221 11  112234458999999999998875321  110


Q ss_pred             ccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 023937          157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIV  195 (275)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~  195 (275)
                            +++..++..+.+.-.|.+.++.|.+.-|...+-
T Consensus       159 ------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g  191 (344)
T PF06379_consen  159 ------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG  191 (344)
T ss_pred             ------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                  001111223345678999999998877776664

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.26  E-value=7.4  Score=31.33  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH
Q 023937          176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL  255 (275)
Q Consensus       176 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~  255 (275)
                      .+..++.+.+..+-.+..-...++.+..++|..-.+..+..|++.+..+.++.++.+ .++...+..|+. ..-|+++..
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~-~~GG~lGa~   81 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWA-WIGGLLGAI   81 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHH-HHccchhhh
Confidence            356678888888999999999998888777888899999999988888877644322 222222333433 223555544


Q ss_pred             ---HHHHHHhccCcc
Q 023937          256 ---IHGHVTRRDLFM  267 (275)
Q Consensus       256 ---l~~~~i~~~~~~  267 (275)
                         .-....+|.|++
T Consensus        82 ~vt~s~~l~p~lGa~   96 (150)
T COG3238          82 FVTSSILLAPRLGAA   96 (150)
T ss_pred             hhhhhHHhccchhHH
Confidence               334555566554

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=85.22  E-value=18  Score=31.54  Aligned_cols=127  Identities=9%  Similarity=-0.023  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 023937            5 GVTAVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C   82 (275)
Q Consensus         5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~   82 (275)
                      .+.+..++++++-|...+.....++++ .|.+.-...=...+.++ .++.....+.++....--.+.+-...+.-++. +
T Consensus       114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a  192 (244)
T PF04142_consen  114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA  192 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence            457778888899999999997777653 34444444445555555 55444333221110111111111222222222 3


Q ss_pred             HHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHH
Q 023937           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTM  138 (275)
Q Consensus        83 ~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~  138 (275)
                      ......-.-+||.+.-.=..-....-+.+.+++..+++.+++..      ..+|..
T Consensus       193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence            44444455677877666666667777888899999999999887      666554

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.4
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.38

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.40  E-value=4.8e-07  Score=70.82  Aligned_cols=68  Identities=25%  Similarity=0.267  Sum_probs=51.7

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        76 ~~g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      ..+++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++++      +++|+++.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            456666 7889999999999999999998 89999999999999999999999      99999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.38  E-value=1.1e-06  Score=66.16  Aligned_cols=68  Identities=25%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (275)
Q Consensus        76 ~~g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  149 (275)
                      ..+..+ ..++.++..++++.|.+.+..+ ..+.|+++.+++.++++|+++++      |++|+++.++|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            455555 7888999999999999999888 79999999999999999999999      99999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00