Citrus Sinensis ID: 023957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccHHHHHHHHHccccccEEEEccccccEEEcccEEEEEccccccEEEcccccccccEEEEEEEEEEEcccEEEccccEEEcccEEEEcccccccccccHHHHHHEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEcccEEEEcccccccEEEEcccccEEEccEEEEcccccccHHHHHcccccccccccccEEEcccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEcccccEEcccHHHHHHHccccccccEEcHHHHcEEEEEEEEEEEcccccEEEEccccEEcccEEEEEccccccccHHHHHHEEEEEcccccHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccEEEEcccccccEEEEcccccEEEccEEEEEccccccHHHHHHcccccHHcccccEEEccccEccccccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mesrrqqqsegknkrVVVIGGGVAGSLVAKSLqfsadvtlidpkeyFEITWASLRAMvepsfgkrsvinhtdylvngrivaspainitenevltaEGRRVVYDYLVIAtghkdpvpktrTERLNqyqaggptgveLAGEiavdfpekkvTLVHKGSRllefigpkagdktrdWLISKKVDvklgervnldsvsegsdtyltstgdtinadchflctgkpvgsdwlkdtilkdsldthgmlmvdenlrvkgqknifaigditdirvsasmifpqvf
Flexible Loop (DISEMBL)
mesrrqqqsegknkrvvvIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAtghkdpvpktrTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHkgsrllefigpkagdktrdwLISKkvdvklgervnldsvsegsdTYLTSTGDTINADCHFLCTGkpvgsdwlKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Low Complexity Region (SEG)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered region (IsUnstruct)
**************RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK*************YQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF****
Disordered Region (DISOPRED)
****************VVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISEMBL)
*************KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISPRO)
************NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFP**F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q54NS9	408	Apoptosis-inducing factor	no	no	0.890	0.600	0.316	6e-27
Q54NS8	387	Apoptosis-inducing factor	no	no	0.894	0.635	0.301	4e-26
Q6GLW8	374	Apoptosis-inducing factor	N/A	no	0.821	0.604	0.290	9e-20
B4F6I3	374	Apoptosis-inducing factor	yes	no	0.821	0.604	0.293	2e-19
B5FXE5	373	Apoptosis-inducing factor	yes	no	0.803	0.592	0.277	2e-19
Q9BRQ8	373	Apoptosis-inducing factor	yes	no	0.803	0.592	0.304	7e-19
A5PJM4	373	Apoptosis-inducing factor	yes	no	0.814	0.600	0.296	2e-17
Q8BUE4	373	Apoptosis-inducing factor	yes	no	0.803	0.592	0.292	1e-16
P52923	378	Apoptosis-inducing factor	yes	no	0.756	0.550	0.262	3e-08
Q94BV7	582	NAD(P)H dehydrogenase B2,	no	no	0.352	0.166	0.341	0.0002

>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 145/294 (49%), Gaps = 49/294 (16%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I +   
Sbjct: 28  KRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKL 87

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQY 126
           L NG+ +    I I+   V   +G+ + +DYLVIATG       K P+ K + TE  N Y
Sbjct: 88  LKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYY 147

Query: 127 Q---------------AGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 165
           +                GG  G E+ GEI   +P       KK+T+VH G++L   +  K
Sbjct: 148 KDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKL---VSSK 204

Query: 166 AGDKTRDW----LISKKVDVKLGERVNL-DSVSE------------GSDTYLTSTGDTIN 208
             +K  +     +  + V V L +R+ + D + +               TY T  G +I 
Sbjct: 205 TNNKFNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSIE 264

Query: 209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262
           +D      G  + S+  K T   + ++  G + V+++ +V+G  NIFAIGDITD
Sbjct: 265 SDFVIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAIGDITD 317

Putative FAD-dependent oxidoreductase.
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 135/295 (45%), Gaps = 49/295 (16%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I +   
Sbjct: 6   KRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKL 65

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQY 126
           L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN +
Sbjct: 66  LKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYF 125

Query: 127 Q---------------AGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 165
           Q                GG    EL  EI   +P       KK+T+VH GS+L   + PK
Sbjct: 126 QNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VNPK 182

Query: 166 AGDKTRD----WLISKKVDVKLGERVNL-------------DSVSEGSDTYLTSTGDTIN 208
             DK  +     +  + V+V L +R+ +              ++   S  Y T  G  I 
Sbjct: 183 MNDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQ 242

Query: 209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           AD      G    S+  +     + ++  G L V+ + +V+G  N+FAIGD TD 
Sbjct: 243 ADLIIWTVGIKTNSESYQSH-FSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDF 296

Putative FAD-dependent oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 36/262 (13%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN----GRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D   +    G++V    IN+  
Sbjct: 32  FGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
             V+      + + +L+IATG   P P    E +++ QA                     
Sbjct: 89  QLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVG 148

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 187
           GG  GVE+A E+  D+PEK+VTL+H    L +  + P      ++ L+ K V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKV 208

Query: 188 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 241
            NLD V+     E  +  L    + +N D    C G  V S   + + L D +   G L+
Sbjct: 209 TNLDQVTPNVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLI 267

Query: 242 VDENLRVKGQKNIFAIGDITDI 263
           V++ L+V+G +N++A+GD   I
Sbjct: 268 VNDYLQVQGHENVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 36/262 (13%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D      + G++V    IN+  
Sbjct: 32  FGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
             V+      + + +L+IATG   P P      +++ QA                     
Sbjct: 89  QRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVG 148

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 187
           GG  GVE+A E+  D+PEK+VTLVH    L +  + PK     ++ L+SK V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKV 208

Query: 188 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 241
            NLD V+     E +   L    + +  D    CTG  + S         D L   G L+
Sbjct: 209 TNLDQVTSNVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALI 267

Query: 242 VDENLRVKGQKNIFAIGDITDI 263
           V++ L+V+G  N++A+GD   I
Sbjct: 268 VNDYLQVQGHANVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 35/256 (13%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D ++ F    A+LRA VE  F K++ I+++    D    G++VA   I+    +V+ +
Sbjct: 38  LVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLS 94

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA---------------------GGPTGV 134
           +G  + Y +L++ATG   P P    + ++   A                     GG  GV
Sbjct: 95  DGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGV 154

Query: 135 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV----NL 189
           E+A EI  ++P K++ L+H  + L +  + P      ++ L+ K V + L E+V    NL
Sbjct: 155 EMAAEIKTEYPGKEIILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEKVSDIENL 214

Query: 190 DSVSEGSDTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 248
                  D  + T  G  +  D   LCTG  + S         D + + G L V+++L++
Sbjct: 215 RPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQL 273

Query: 249 KGQKNIFAIGDITDIR 264
           +G +NI+AIGD  D++
Sbjct: 274 EGYENIYAIGDCADLK 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Taeniopygia guttata (taxid: 59729)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 35/256 (13%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G +V    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA---------------------GGPTGV 134
            G  + + +L++ATG   P P    E  +Q  A                     GG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGV 155

Query: 135 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 192
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 193 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 248
                  Y+   T  G  +  +   LCTG  + S   +    +  L + G L V+E+L+V
Sbjct: 216 PLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQV 274

Query: 249 KGQKNIFAIGDITDIR 264
           +G  N++AIGD  D+R
Sbjct: 275 EGHSNVYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 29/253 (11%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINITENEVLTAEGR 98
           L+D K+ F    A+LRA VE  F K++ I+++  +  N R      I++    VL  +G+
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQ 98

Query: 99  RVVYDYLVIATG---------------------HKDPVPKTRTERLNQYQAGGPTGVELA 137
            + + +L++ATG                     ++D V + +  +      GG  GVE+A
Sbjct: 99  ALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMA 158

Query: 138 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDS--VS 193
            EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL++  V+
Sbjct: 159 AEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPVN 218

Query: 194 EGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 251
           E  +     T  G  ++A+   +C G  + S   + +   D L ++G L V+E L+V+G 
Sbjct: 219 ERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYLQVEGY 277

Query: 252 KNIFAIGDITDIR 264
            +I+AIGD  D+R
Sbjct: 278 SHIYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 35/256 (13%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G+++    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA---------------------GGPTGV 134
            G  + + +L++ATG   P P    E   Q  A                     GG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGV 155

Query: 135 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 192
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 193 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 248
                  Y+   T  G  +  +   +C G  + S   +    +  L ++G L V+E L+V
Sbjct: 216 PRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSA-FESRLASNGALKVNEFLQV 274

Query: 249 KGQKNIFAIGDITDIR 264
           +G  NI+AIGD  D +
Sbjct: 275 EGYSNIYAIGDCADTK 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death (By similarity). May contribute to genotoxin-induced growth arrest.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 66/274 (24%)

Query: 38  VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINITENEVLTAE 96
           + L+    Y     +++R  V   + K S++   + L +G  ++   A +  + EV+   
Sbjct: 34  IKLVTASNYVYFLPSAVRLTVSKDYTK-SILPLKNVLDSGIEVIKDTAASFDDKEVVLGS 92

Query: 97  GRRVVYDYLVIATGHK--DPVPKTRT-------------ERLNQ-----YQAGGPTGVEL 136
            R + +D LV+ATG K  DP+  T T              R++      +  GG    EL
Sbjct: 93  DRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCEL 152

Query: 137 AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAG---DKTR----DWLISKKVDVKL 183
           AGE+   + E      K+++++H   +LL    P +G   D  R    D+L    + + L
Sbjct: 153 AGELLFKYLEEIRSGKKRISIIHNSDKLL----PDSGLYNDTLRKNVTDYLSKNGITLYL 208

Query: 184 GE-RVNLDS------VSEGSDTYLTSTGDTINADCHFLCTG----KPVGSDWLKDTILKD 232
                +LD+      + EGS  Y       I+AD  +   G     PV S       + D
Sbjct: 209 NTVGASLDTSPKRIFLGEGSSKY-------IDADLIYRGVGISPNVPVNS-------ISD 254

Query: 233 SLDTHGMLMVDENLRVKGQK--NIFAIGDITDIR 264
             D  G + V++N RVK  +  N+FAIGD+T+ R
Sbjct: 255 LCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNFR 288

Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 20/117 (17%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEIT---------WASLRAMVEP- 60
           K K+VV++G G AG+   K+L  S  +V +I P+ YF  T             R++VEP 
Sbjct: 57  KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116

Query: 61  -SFGKRSVINHTDYLVNGRIVASPA---INITENEVLTAEGRR---VVYDYLVIATG 110
            + G+++V   T YL        PA   +     + L++ G++   V YDYLVIATG
Sbjct: 117 RNIGRKNV--DTSYLEAECFKIDPASKKVYCRSKQGLSSNGKKEFSVDYDYLVIATG 171

Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224059230	362	predicted protein [Populus trichocarpa]	0.916	0.696	0.706	1e-104
225436124	368	PREDICTED: apoptosis-inducing factor hom	0.916	0.684	0.730	1e-102
359487025	365	PREDICTED: apoptosis-inducing factor hom	0.901	0.679	0.686	1e-102
147860316	365	hypothetical protein VITISV_040675 [Viti	0.901	0.679	0.686	1e-101
15229901	367	FAD/NAD(P)-binding oxidoreductase family	0.941	0.705	0.653	1e-100
297818884	367	pyridine nucleotide-disulfide oxidoreduc	0.941	0.705	0.653	1e-100
356539209	359	PREDICTED: apoptosis-inducing factor hom	0.923	0.707	0.661	1e-100
356542786	361	PREDICTED: apoptosis-inducing factor hom	0.905	0.689	0.678	1e-100
255565779	363	apoptosis-inducing factor, putative [Ric	0.905	0.685	0.677	1e-100
297812335	365	pyridine nucleotide-disulfide oxidoreduc	0.916	0.690	0.659	2e-97

>gi|224059230|ref|XP_002299779.1| predicted protein [Populus trichocarpa] gi|222847037|gb|EEE84584.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 215/269 (79%), Gaps = 17/269 (6%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + +R+VVIGGG+AGSL+AKSLQF ADVT IDPKEYFEITWA+LR MVEPSFG+RSVINH 
Sbjct: 7   EKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHR 66

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--- 128
           DY  NGRIV S AI ITE EVLTA+   + YDYLVIATGH+DPVPKTR ERL +YQA   
Sbjct: 67  DYYTNGRIVTSTAIGITETEVLTADDFSIPYDYLVIATGHRDPVPKTRMERLKEYQAENE 126

Query: 129 ------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 176
                       GGPTGVELAGEI+VDFPEK VTLVH GSRLLEFIGPKA DKT  WL S
Sbjct: 127 KIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTS 186

Query: 177 KKVDVKLGERVNLDSV--SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 234
           K+VDVKL +RV+L+SV  S GS  Y T+ G++I ADCHFLCTGKP+GS WL+ TIL  +L
Sbjct: 187 KRVDVKLEQRVDLNSVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNL 246

Query: 235 DTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           D+ G LMVDE LRVKG+KNIFAIGDITD+
Sbjct: 247 DSRGRLMVDEYLRVKGRKNIFAIGDITDV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436124|ref|XP_002278901.1| PREDICTED: apoptosis-inducing factor homolog A [Vitis vinifera] gi|296084033|emb|CBI24421.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/267 (73%), Positives = 219/267 (82%), Gaps = 15/267 (5%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           KN+RVVVIGGGVAGSL+AKSLQF ADVTL+DPKEYFEI WASLRAMVEPSF +RSVINH 
Sbjct: 9   KNRRVVVIGGGVAGSLLAKSLQFHADVTLLDPKEYFEIPWASLRAMVEPSFAERSVINHR 68

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ---- 127
           DYL NGRI+ S AIN+T+ EVLTAEGR +VYDYLVIATGH   VP+TRTERL+QY+    
Sbjct: 69  DYLTNGRIITSRAINVTDKEVLTAEGRALVYDYLVIATGHLYSVPRTRTERLSQYETENE 128

Query: 128 -----------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 176
                       GGPTGVEL GEIAVDFPEK+VTLVH GSRL++FIGPKA +KT DWL S
Sbjct: 129 KIRSAGSILIIGGGPTGVELTGEIAVDFPEKEVTLVHNGSRLMQFIGPKASNKTLDWLRS 188

Query: 177 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 236
           K+V+VKL + VNL+SVS+GS TY TS G+TI ADCHFLCTG P+GS WLK+T LKD LD 
Sbjct: 189 KRVEVKLEQSVNLNSVSDGSRTYQTSAGETIEADCHFLCTGSPLGSAWLKETFLKDKLDI 248

Query: 237 HGMLMVDENLRVKGQKNIFAIGDITDI 263
           HG LMVD+NLRVK   NIFAIGDITDI
Sbjct: 249 HGRLMVDKNLRVKDHSNIFAIGDITDI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487025|ref|XP_002266714.2| PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera] gi|296084446|emb|CBI25005.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 215/265 (81%), Gaps = 17/265 (6%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
           L NG++V S A+NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQA     
Sbjct: 74  LTNGKLVVSTAVNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLEQYQAESEKI 133

Query: 129 ----------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 178
                     GGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 238
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIRADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 239 MLMVDENLRVKGQKNIFAIGDITDI 263
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860316|emb|CAN79702.1| hypothetical protein VITISV_040675 [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 214/265 (80%), Gaps = 17/265 (6%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
           L NG++V S A NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQA     
Sbjct: 74  LTNGQLVVSTAXNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLKQYQAESEKI 133

Query: 129 ----------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 178
                     GGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 238
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 239 MLMVDENLRVKGQKNIFAIGDITDI 263
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229901|ref|NP_190005.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis thaliana] gi|21536882|gb|AAM61214.1| unknown [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1| putative protein [Arabidopsis thaliana] gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis thaliana] gi|332644353|gb|AEE77874.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/274 (65%), Positives = 215/274 (78%), Gaps = 15/274 (5%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct: 3   KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQ---------------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 169
           QYQ                GGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229
             DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 230 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818884|ref|XP_002877325.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323163|gb|EFH53584.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/274 (65%), Positives = 216/274 (78%), Gaps = 15/274 (5%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK +RVVVIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEPSF +
Sbjct: 3   KTESKSGKGRRVVVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPSFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +V+TA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVVTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQA---------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 169
           QYQA               GGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQAEYEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229
             DW+ SK+V+V L +RV+L S S+G+ TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 AFDWMKSKRVEVILNQRVDLSSASDGNKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 230 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539209|ref|XP_003538092.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/269 (66%), Positives = 212/269 (78%), Gaps = 15/269 (5%)

Query: 10  EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
           E   KRVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR MVEPSF +RS+IN
Sbjct: 2   EKDGKRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRCMVEPSFAERSLIN 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ-- 127
           H DYL NG I+ S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++  
Sbjct: 62  HRDYLTNGDIITSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKED 121

Query: 128 -------------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 174
                         GGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEF+G KAGDKT +WL
Sbjct: 122 NREIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFVGAKAGDKTLNWL 181

Query: 175 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 234
            SK V VKL + V++++ ++G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ L
Sbjct: 182 KSKNVVVKLEQSVDMNAFTDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDL 241

Query: 235 DTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           D  G + VDE LRVKG+ NIFAIGDITDI
Sbjct: 242 DGQGRIKVDERLRVKGRNNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542786|ref|XP_003539846.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/264 (67%), Positives = 209/264 (79%), Gaps = 15/264 (5%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
           RVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR+MVEPSF +RSVINH DY 
Sbjct: 7   RVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINHRDYF 66

Query: 75  VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ------- 127
            NG IV S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++       
Sbjct: 67  TNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIK 126

Query: 128 --------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 179
                    GGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEFIG KAGDKT +WL SK V
Sbjct: 127 SAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNV 186

Query: 180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 239
            VKL + V+L++  +G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ LD  G 
Sbjct: 187 VVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGR 246

Query: 240 LMVDENLRVKGQKNIFAIGDITDI 263
           + VDE LRVKG+ NIFAIGDITDI
Sbjct: 247 IKVDEKLRVKGKDNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565779|ref|XP_002523879.1| apoptosis-inducing factor, putative [Ricinus communis] gi|223536967|gb|EEF38605.1| apoptosis-inducing factor, putative [Ricinus communis]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/270 (67%), Positives = 218/270 (80%), Gaps = 21/270 (7%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           +RVVVIGGG+AGSL+AK+LQF A +TL+DPKEYFEITWA+LRA+VEPSF +RSVINH DY
Sbjct: 11  RRVVVIGGGIAGSLIAKNLQFDAHLTLVDPKEYFEITWANLRALVEPSFAERSVINHRDY 70

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
             NGRI+AS A+++T+ +VLTA+G+ + YDYLVIATGH D VPKTRTERL +YQA     
Sbjct: 71  FTNGRIIASSAVDVTDADVLTADGQVIPYDYLVIATGHADSVPKTRTERLTEYQAGNEKI 130

Query: 129 ----------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 178
                     GGPTGVELAGEIA DFPEKKVTLVH GSRL+EFIGPKA +KT  WL SK 
Sbjct: 131 KSAHSILIVGGGPTGVELAGEIAADFPEKKVTLVHDGSRLMEFIGPKAANKTLKWLRSKN 190

Query: 179 VDVKLGERVNLDSVSEGSD-----TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS 233
           V+VKL +RV+L+S++ GSD     TY TS G+TI ADCHFLCTG P+GS WLKDT+LK++
Sbjct: 191 VEVKLEQRVDLNSIT-GSDGNCTKTYHTSAGETIKADCHFLCTGIPLGSAWLKDTVLKNN 249

Query: 234 LDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           LD +G L VDE LRV+G KNIFAIGDIT+I
Sbjct: 250 LDANGRLEVDEYLRVRGWKNIFAIGDITNI 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812335|ref|XP_002874051.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319888|gb|EFH50310.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/267 (65%), Positives = 207/267 (77%), Gaps = 15/267 (5%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + KRVVVIGGG+AGSL AK LQF ADVTLIDPKEYFEITWASLR+MVEP F +R+VI+H 
Sbjct: 10  QGKRVVVIGGGIAGSLAAKLLQFDADVTLIDPKEYFEITWASLRSMVEPKFAERTVIDHK 69

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--- 128
            YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR E+L+ YQA   
Sbjct: 70  SYLKQGRVVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQAEYE 129

Query: 129 ------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 176
                       GGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G KA DK  DWL S
Sbjct: 130 KIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLES 189

Query: 177 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 236
           KKV+V L + V+L S S+G+ TY TS G+TI+ADCHFLC GKP+ S WL  T+LKDSLD 
Sbjct: 190 KKVEVILNQSVDLSSASDGNKTYRTSGGETIHADCHFLCVGKPLSSQWLNGTVLKDSLDG 249

Query: 237 HGMLMVDENLRVKGQKNIFAIGDITDI 263
            G +MVDE LR++G+ N+FAIGDIT+I
Sbjct: 250 KGRVMVDEYLRIRGRSNLFAIGDITNI 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2081373	367	AT3G44190 [Arabidopsis thalian	0.941	0.705	0.653	1.5e-92
TAIR|locus:504956456	365	AT5G22140 "AT5G22140" [Arabido	0.949	0.715	0.629	2.9e-87
UNIPROTKB|Q9BRQ8	373	AIFM2 "Apoptosis-inducing fact	0.556	0.410	0.325	3e-28
UNIPROTKB|A5PJM4	373	AIFM2 "Apoptosis-inducing fact	0.556	0.410	0.325	6.4e-25
RGD|1304964	373	Aifm2 "apoptosis-inducing fact	0.556	0.410	0.312	8.7e-24
MGI|MGI:1918611	373	Aifm2 "apoptosis-inducing fact	0.556	0.410	0.306	5.7e-23
UNIPROTKB|E1BR24	373	AIFM2 "Uncharacterized protein	0.552	0.407	0.304	1.1e-22
DICTYBASE|DDB_G0285003	408	aifC "putative apoptosis induc	0.410	0.276	0.377	1.4e-22
UNIPROTKB|F1SUD4	373	AIFM2 "Uncharacterized protein	0.556	0.410	0.312	6.9e-22
UNIPROTKB|E2RQW8	373	AIFM2 "Uncharacterized protein	0.556	0.410	0.306	9.2e-22

TAIR|locus:2081373 AT3G44190 [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 179/274 (65%), Positives = 215/274 (78%)

Query:     5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
             + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct:     3 KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query:    65 RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
             RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct:    63 RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query:   125 QYQA---------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 169
             QYQ                GGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct:   123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query:   170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229
               DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct:   183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query:   230 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
             LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct:   243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:504956456 AT5G22140 "AT5G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 175/278 (62%), Positives = 208/278 (74%)

Query:     1 MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEP 60
             ME       +GK  RVVVIGGG+AGSL AK LQF A+VTLIDPKEYFEITWASLR+MVEP
Sbjct:     1 MEGIESGSKQGK--RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEP 58

Query:    61 SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
              F +R+VINH  YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR 
Sbjct:    59 KFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQ 118

Query:   121 ERLNQYQA---------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 165
             E+L+ YQ+               GGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G K
Sbjct:   119 EKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQK 178

Query:   166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 225
             A DK  DWL SKKV+V L + V+L S S+G+  Y TS G+TI+AD HFLC GKP+ S WL
Sbjct:   179 AADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWL 238

Query:   226 KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
               T+LKDSLD  G +MVDE LR++G+ N+FA+GDIT+I
Sbjct:   239 NGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNI 276

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9BRQ8 AIFM2 "Apoptosis-inducing factor 2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 52/160 (32%), Positives = 84/160 (52%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  R      GG  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL+ +       Y+   T  G  +  +   LCTG  + S  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEELPLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSA 251

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
              +    +  L + G L V+E+L+V+G  N++AIGD  D+R
Sbjct:   252 YRKAF-ESRLASSGALRVNEHLQVEGHSNVYAIGDCADVR 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008637 "apoptotic mitochondrial changes" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0030261 "chromosome condensation" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A5PJM4 AIFM2 "Apoptosis-inducing factor 2" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
 Identities = 52/160 (32%), Positives = 87/160 (54%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  +      GG  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVTQVQRSQSIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSKMALADTELLPCVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDS--VSEGSDTYLTST--GDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL++  V+E  +     T  G  ++A+   +C G  + S  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEALPVNERRECIKVQTDKGTEVDANLVIVCNGIKINSAA 251

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
              +     D L ++G L V+E L+V+G  +I+AIGD  D+R
Sbjct:   252 YRSAF-GDRLASNGALRVNEYLQVEGYSHIYAIGDCADVR 290

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

RGD|1304964 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
 Identities = 50/160 (31%), Positives = 83/160 (51%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  +      GG  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL+ +       Y+   T  G  +  +   +C G  + S  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSA 251

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
              +    +  L ++G L V+E L+V+G  NI+AIGD  DI+
Sbjct:   252 YRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADIK 290

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0030261 "chromosome condensation" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

MGI|MGI:1918611 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
 Identities = 49/160 (30%), Positives = 82/160 (51%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  +      GG  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL+ +       Y+   T  G  +  +   +C G  + S  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSA 251

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
              +    +  L ++G L V+E L+V+G  NI+AIGD  D +
Sbjct:   252 YRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADTK 290

GO:0003677 "DNA binding" evidence=ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E1BR24 AIFM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 49/161 (30%), Positives = 88/161 (54%)

Query:   111 HKDPVPKT-RTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGD 168
             ++D V +  ++ER+     GG  GVE+A EI  ++P K+VTL+H    L +  +      
Sbjct:   131 YEDMVKEIEKSERI-LVVGGGAAGVEMAAEIKTEYPAKEVTLIHSKIALADVELLQSVRQ 189

Query:   169 KTRDWLISKKVDVKLGERV-NLDSVSEGS---DTYL-TSTGDTINADCHFLCTGKPVGSD 223
             + ++ L+ K V + L E+V N+++++      D  + T  G  +  D   LCTG  + S 
Sbjct:   190 EVKEILLRKGVRLLLSEKVSNVENLTTNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSS 249

Query:   224 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
                 T   D L ++G L V+++L+++G  NI+AIGD  +++
Sbjct:   250 AYA-TAFGDKLASNGALNVNKHLQLEGYDNIYAIGDCANLK 289

GO:0003677 "DNA binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

DICTYBASE|DDB_G0285003 aifC "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 191 (72.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 43/114 (37%), Positives = 67/114 (58%)

Query:    12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
             + KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I + 
Sbjct:    26 EKKRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYD 85

Query:    72 DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTERLN 124
               L NG+ +    I I+   V   +G+ + +DYLVIATG     P K   E+++
Sbjct:    86 KLLKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKIS 139

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SUD4 AIFM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
 Identities = 50/160 (31%), Positives = 85/160 (53%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  +      GG  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVTQVQRSQAIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQMALADTELLPCVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDSV--SEGSDTYLTST--GDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL+ +  +E  +     T  G  + A+   +C G  + +  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEGLPLNEYQECIKVQTDKGTEVAANLVIVCNGIRINTLA 251

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
              +   L D L   G L V+E+L+V+G  +I+AIGD  ++R
Sbjct:   252 YRSA-LGDRLAGSGALRVNEHLQVEGCSHIYAIGDCANVR 290

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RQW8 AIFM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
 Identities = 49/160 (30%), Positives = 83/160 (51%)

Query:   111 HKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 169
             ++D V + +  +      GG  GVE+A E+  +FPEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVKQVQRSQSVVVVGGGSAGVEMAAEVKTEFPEKEVTLIHSQVALADKELLPCVRQE 191

Query:   170 TRDWLISKKVDVKLGERV-NLDSV--SEGSDTYLTST--GDTINADCHFLCTGKPVGSDW 224
              ++ L+ K V + L ERV NL+ +  +E  +     T  G  +  +   +C G  V S  
Sbjct:   192 AKEILLQKGVQLLLSERVSNLEDLPLNEYRERIQVHTDKGTEVATNLVIVCNGIKVNSS- 250

Query:   225 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
                +     L ++G L V+E L+V+G  +I+AIGD  D++
Sbjct:   251 AYHSAFDGHLASNGALRVNEYLQVEGYSHIYAIGDCADVK 290

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001564 hypothetical protein (362 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-37
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	7e-19
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-16
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	1e-14
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-11
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	1e-09
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-08
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	1e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-05
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	9e-05
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	9e-05
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	2e-04
pfam13241	104	pfam13241, NAD_binding_7, Putative NAD(P)-binding	2e-04
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	3e-04
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	5e-04
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	0.001
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.004
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	0.004

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  135 bits (341), Expect = 4e-37
 Identities = 84/313 (26%), Positives = 119/313 (38%), Gaps = 76/313 (24%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYF-EITW--------ASLRAMVEPS 61
           KR+V++GGG  G   AK L       ++TL+D ++Y               S   +  P 
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP- 62

Query: 62  FGKRSVINHTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
              R+++  +     V G +     I+    +V  A+   + YDYLV+A G +       
Sbjct: 63  --LRALLRKSGNVQFVQGEVTD---IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117

Query: 119 ------------------RTERLNQYQA-----------------GGPTGVELAGEIA-- 141
                             R   L  ++                  GGPTGVELAGE+A  
Sbjct: 118 GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAER 177

Query: 142 ---------VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 192
                    VD  E +V LV  G R+L    PK        L    V+V LG  V    V
Sbjct: 178 LHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT--EV 235

Query: 193 SEGSDTYLTSTGD-TINADCHFLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKG 250
           +    T     G+  I AD      G  V  S  LKD    ++ D  G L+V+  L+V G
Sbjct: 236 TPDGVT--LKDGEEEIPADTVVWAAG--VRASPLLKDLSGLET-DRRGRLVVNPTLQVPG 290

Query: 251 QKNIFAIGDITDI 263
             +IFA GD   +
Sbjct: 291 HPDIFAAGDCAAV 303

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 83.6 bits (207), Expect = 7e-19
 Identities = 69/292 (23%), Positives = 108/292 (36%), Gaps = 52/292 (17%)

Query: 15  RVVVIGGGVAGSLVAKSL-QFSADVTLID------------PKEYFEITWASLRAMVEPS 61
            VV+IGGG AG   A  L +    V LI+            PK    +  A    +    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPK-KLLLEVAEGLELAIGL 59

Query: 62  FGKRSVINH--TDYLVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATG---HKD 113
                V      + L+   +V    I+  E  V+  +   GR + YD L+IATG      
Sbjct: 60  ALPEEVYKEFGVEVLLGTEVVD---IDRGEKTVVLKDVETGREITYDKLIIATGARPRIP 116

Query: 114 PVPKTRTERLNQYQA------------------GGPTGVELAGEIAVDFPEKKVTLVHKG 155
            +P      L                       GG  G+ELA  +A     K+VT+V + 
Sbjct: 117 GIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KL-GKEVTVVERR 174

Query: 156 SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHF 213
            RLL     +      + L    + V +   V +              GD   ++AD   
Sbjct: 175 DRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVL 234

Query: 214 LCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
           +  G +P  ++ L+   ++  LD  G ++VDE LR      I+A GD+ + +
Sbjct: 235 VAIGRRPN-TELLEQAGVE--LDERGYIVVDEYLRTS-VPGIYAAGDVAEGK 282

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 77.3 bits (190), Expect = 3e-16
 Identities = 69/297 (23%), Positives = 113/297 (38%), Gaps = 53/297 (17%)

Query: 16  VVVIGGGVAGSLVAKSL---QFSADVTLI--DPKEYF---------EITWASL-RAMVEP 60
           +V++GGG AG   A +L     +A++TLI  +PK  +             ASL      P
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60

Query: 61  SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---------- 110
            F + + I   D      + +   I+     VL  +G  + YDYLV+ATG          
Sbjct: 61  RFNRATGI---DVRTGTEVTS---IDPENKVVLLDDGE-IEYDYLVLATGARPRPPPISD 113

Query: 111 -HKDPVPKTR--TERLNQYQ---------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 158
                  + R   E L               GP G+E A   A     KKVTL+    RL
Sbjct: 114 WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRL 171

Query: 159 LE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCH---FL 214
               + P+  ++  + L    V++ LG +V    V    +T +      I+ +      +
Sbjct: 172 GGQLLDPEVAEELAELLEKYGVELLLGTKVV--GVEGKGNTLVVERVVGIDGEEIKADLV 229

Query: 215 CTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI 270
             G     +  L +  L       G ++VDE        +++A GD+ +I  + +  
Sbjct: 230 IIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGK 286

Length = 415

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 69/305 (22%), Positives = 102/305 (33%), Gaps = 84/305 (27%)

Query: 15  RVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWAS----------------- 53
            +V+IGGG   +LV +           VTLI+P      T  S                 
Sbjct: 1   HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIAGHYSLDEIR 57

Query: 54  --LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             LR +   +  +          V         I+    +VL A    + YD L +  G 
Sbjct: 58  IDLRRLARQAGAR---------FVIAEATG---IDPDRRKVLLANRPPLSYDVLSLDVGS 105

Query: 112 KDPVP-------------------KTRTERLNQYQA-----------GGPTGVELAGEIA 141
             P+                          L    A           GG  GVE+A  + 
Sbjct: 106 TTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALR 165

Query: 142 VDFPEK----KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS-VSEGS 196
              P++    +VTL+   S L  F       K R  +   ++  + G  V+  + V+ G 
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGF-----PAKVRRLV--LRLLARRGIEVHEGAPVTRGP 218

Query: 197 DTYLT-STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIF 255
           D  L  + G T+ AD     TG      WL ++ L   LD  G L VD  L+     ++F
Sbjct: 219 DGALILADGRTLPADAILWATGA-RAPPWLAESGL--PLDEDGFLRVDPTLQSLSHPHVF 275

Query: 256 AIGDI 260
           A GD 
Sbjct: 276 AAGDC 280

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 67/315 (21%), Positives = 108/315 (34%), Gaps = 70/315 (22%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEIT------------WASLRAMV 58
           K   VVVIG G AG + A    Q    V L++  E    T              +   + 
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62

Query: 59  E-----PSFGKRSVINHTDY-------------LVNGR----------IVASPAINITEN 90
           E       +G  + +   D+             L  G           ++   A  +  +
Sbjct: 63  EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122

Query: 91  --EVLTAEGRRVVYDYLVIATGHKDPVPK----TRTERLNQYQA--------------GG 130
             EV   +   +  D ++IATG +  +P          L+   A              GG
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGG 182

Query: 131 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190
             G+E A  +       KVT+V +G R+L    P+   +    L    V + L  +V   
Sbjct: 183 YIGLEFAS-VFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240

Query: 191 SVSEGSDTYLTSTGD--TINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 246
              +         G+  TI AD   +  G KP      L++  ++  LD  G + VD+ +
Sbjct: 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE--LDDRGFIKVDDQM 298

Query: 247 RVKGQKNIFAIGDIT 261
                  I+AIGD+ 
Sbjct: 299 TTN-VPGIYAIGDVI 312

Length = 454

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 76/334 (22%), Positives = 114/334 (34%), Gaps = 88/334 (26%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEIT---------WAS 53
            R + +  K   VVV+G G AG+   ++L     ++T+I P+ +   T            
Sbjct: 1   MRSRTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLE 60

Query: 54  LRAMVEPSFGKRSVINHTDY-LVNGRIVASPAINITENEVLTAEGRR----------VVY 102
            R++ EP    R  +       +   +     ++  E  V      +          V Y
Sbjct: 61  FRSICEPV---RPALAKLPNRYLRAVVYD---VDFEEKRVKCGVVSKSNNANVNTFSVPY 114

Query: 103 DYLVIATGHKD-----------------------------------PVPKTRTE---RLN 124
           D LV+A G +                                     +P T  E   RL 
Sbjct: 115 DKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLL 174

Query: 125 QY--QAGGPTGVELAGEIAVDF-------------PEKKVTLVHKGSRLLEFIGPKAGDK 169
            +    GGPTGVE A E+A DF              E KVT++  GS +L          
Sbjct: 175 HFVVVGGGPTGVEFAAELA-DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKY 233

Query: 170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229
            +  L    VD++    V            +   G+ I        TG  VG   L    
Sbjct: 234 GQRRLRRLGVDIRTKTAV----KEVLDKEVVLKDGEVIPTGLVVWSTG--VGPGPLTKQ- 286

Query: 230 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263
           LK    + G + VD++LRVK   N+FA+GD    
Sbjct: 287 LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320

Length = 424

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 54/289 (18%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEY---FEITWASLRAMVEPSFGKR 65
           K K ++++GGG A ++ A SL    F+ ++ L    E    +E    S   ++E S   +
Sbjct: 2   KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS-DERHLPYERPPLSKSMLLEDSPQLQ 60

Query: 66  SVINHTDYLVN------GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVP-- 116
            V+    +  N      G  + +  +     E++   G    +D L IATG    P+P  
Sbjct: 61  QVLPANWWQENNVHLHSGVTIKT--LGRDTRELVLTNGESWHWDQLFIATGAAARPLPLL 118

Query: 117 --------KTRT----ERLNQ---------YQAGGPTGVELAGEIAVDFPEKKVTLVHKG 155
                     R      RL +             G  G+ELA   A      KVT++   
Sbjct: 119 DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS-ATQR-RCKVTVIELA 176

Query: 156 SRLLEFIGPKAGDKTRDWLISK--KVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCH 212
           + ++   G  A    + +L+ +  +  V++     ++ V +G    LT  +G+T+ AD  
Sbjct: 177 ATVM---GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVV 233

Query: 213 FLCTGKPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDI 260
               G         D + +++ LDT   +++DE  R      IFA GD+
Sbjct: 234 IYGIGIS-----ANDQLAREANLDTANGIVIDEACRT-CDPAIFAGGDV 276

Length = 396

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 34/205 (16%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLNQYQ---- 127
           +      T E     YDYL+++ G    VP                  T+ + QY     
Sbjct: 77  VVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNK 136

Query: 128 -------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKV 179
                   GG  G+E+A   A+    K VTL+H+  R+L +    +      + L   ++
Sbjct: 137 VENVVIIGGGYIGIEMAE--ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEI 194

Query: 180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 239
           +++L E V  DS+       + ++G    AD   L TG    S+  KD+ LK  L   G 
Sbjct: 195 NLRLNEEV--DSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLK--LGETGA 250

Query: 240 LMVDENLRVKGQKNIFAIGDITDIR 264
           + V+E  +     NI+A GD+ +  
Sbjct: 251 IWVNEKFQTS-VPNIYAAGDVAESH 274

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 24/143 (16%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRS 66
           +     KRVVV+GGG  G  +A +L +   +VT+++ ++        L    +       
Sbjct: 137 ELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL------LARADDEISAALL 190

Query: 67  VINHTDYLVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER 122
                  L    ++    +    +    EV   +G  +  D +++A G +       TE 
Sbjct: 191 EKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRP-----NTEL 245

Query: 123 LNQYQAGGPTGVELA--GEIAVD 143
           L Q       GVEL   G I VD
Sbjct: 246 LEQ------AGVELDERGYIVVD 262

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 52/213 (24%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDPV--------------------PKTRTERLNQY 126
             +   +   G R+    +VIATG + P                          + L   
Sbjct: 116 FVDPNTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSL--- 172

Query: 127 QA---GGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 177
            A   GG  G+EL       G         KVT+  +G R+L    P+   + +  ++SK
Sbjct: 173 -AVIGGGVIGLELGQALSRLG--------VKVTVFERGDRILPLEDPEVSKQAQK-ILSK 222

Query: 178 KVDVKLGERVNLDSVSEGSD---TYLTSTGD--TINADCHFLCTG-KPVGSDWLKDTILK 231
           +  +KLG +V   SV +  D     L   G   TI AD   + TG +P  +D L      
Sbjct: 223 EFKIKLGAKV--TSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN-TDGLGLENTG 279

Query: 232 DSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
             LD  G  +VDE+ +      I+A GD+    
Sbjct: 280 IELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKP 311

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN 188
           GG  G+E A          KVT+V +  RLL     +     ++ L    ++V L   V 
Sbjct: 7   GGYIGLEFA-SALAKL-GSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 48/208 (23%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER----LN---QYQA------------ 128
            E +V+ ++G +  YD LV+ATG    VP          LN   +Y+A            
Sbjct: 86  AEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVL 145

Query: 129 ---GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTRDWLISKKVD 180
              GG  G ELA ++      K VTLV   + LL       +  +   +    L    V 
Sbjct: 146 VVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLASLMPPEVSSRLQHR----LTEMGVH 199

Query: 181 VKLGERVNLDSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTIL--KDSLD 235
           + L  ++    + +          +G +I  D      G +P       +T L  +  L 
Sbjct: 200 LLLKSQLQ--GLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP-------NTALARRAGLA 250

Query: 236 THGMLMVDENLRVKGQKNIFAIGDITDI 263
            +  ++VD  L+     +I+A+GD  +I
Sbjct: 251 VNRGIVVDSYLQTS-APDIYALGDCAEI 277

Length = 377

>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFE---ITWA 52
          K KRV+V+GGG VA   +   L+  A VT++ P+       +   
Sbjct: 6  KGKRVLVVGGGEVALRKIRALLEAGAKVTVVSPEILEAEGLVRLI 50

This domain is found in fungi, plants, archaea and bacteria. Length = 104

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEITWASLRA 56
                  G   R+ V+GGG AG  +A +L+           VTLI          A +R 
Sbjct: 137 ESADAPPGTK-RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRR 195

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114
           +V     +R +  H           +P     +  ++ A+GR +  D ++ ATG + P
Sbjct: 196 LVLRLLARRGIEVHEG---------APVTRGPDGALILADGRTLPADAILWATGARAP 244

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 77  GRIV----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-----------KTRTE 121
           GRI+     SP       E  T E   ++ + L+IATG + PV             +  E
Sbjct: 114 GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVELPGLPFDGEYVISSDE 172

Query: 122 RLNQYQ--------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGD 168
            L+            GG  G+E A  +A DF   +VT+V    R+L     E     A  
Sbjct: 173 ALSLETLPKSLVIVGGGVIGLEWASMLA-DF-GVEVTVVEAADRILPTEDAELSKEVA-- 228

Query: 169 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTG-KPVGSD 223
                L    V V  G +V   ++ +     + +  +    T+ AD   +  G +P    
Sbjct: 229 ---RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285

Query: 224 W-LKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDIT 261
             L++T     +D   G + +D+  + K +++I+AIGD+ 
Sbjct: 286 IGLENT----DIDVEGGFIQIDDFCQTK-ERHIYAIGDVI 320

Length = 472

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 64/302 (21%), Positives = 109/302 (36%), Gaps = 76/302 (25%)

Query: 14  KRVVVIGGGVAG-SLVAKS--LQFSADVTLIDPKEYFEITWAS----------------L 54
            ++++IGG  AG S  AK+  L    ++T+ +  +   +++ +                +
Sbjct: 1   MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI--VSFGACGLPYFVGGFFDDPNTM 58

Query: 55  RAMVEPSFGKRSV---INHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIA 108
            A     F K  +     H    V   N  I      N+    +         YD L+IA
Sbjct: 59  IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVK---NLKTGSIFNDT-----YDKLMIA 110

Query: 109 TGHKDPVP-------------KTRTERLNQYQA-------------GGPTGVELAGEIAV 142
           TG +  +P             K+  + L   +               G  G+E   E A 
Sbjct: 111 TGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAV-EAAK 169

Query: 143 DFPEKKVTLVHKGSRLLEFIGPKAGDK-----TRDWLISKKVDVKLGERVNLDSVSEGSD 197
               K V ++    R+L    P + DK       + L    V++ L E V    + E   
Sbjct: 170 HL-GKNVRIIQLEDRIL----PDSFDKEITDVMEEELRENGVELHLNEFV-KSLIGEDKV 223

Query: 198 TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 257
             + +      AD   + TG    +++L+DT LK     +G ++VDE       +NI+A 
Sbjct: 224 EGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLK--TLKNGAIIVDEYGETS-IENIYAA 280

Query: 258 GD 259
           GD
Sbjct: 281 GD 282

Length = 444

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLID 42
           +    K +   +IGGG+AG+ +A +L      VTL +
Sbjct: 254 RPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 148 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 207
           +VT+V++  RLL  +     ++  + L SK+ DV+LG  V   S      T     G T+
Sbjct: 191 RVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTV 249

Query: 208 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262
            AD   + TG+    D L        +D  G ++VDE  R    + +FA+GD++ 
Sbjct: 250 EADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSS 303

Length = 451

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 66/306 (21%), Positives = 119/306 (38%), Gaps = 78/306 (25%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW-------ASLRAMVEPSFGK 64
           K +++V+IG G+AG    + L       L    + ++IT           R ++      
Sbjct: 2   KKQKLVIIGNGMAGHRTIEEL-------LESAPDLYDITVFGEEPRPNYNRILLSSVLAG 54

Query: 65  RS-----VINHTDY--------LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG- 110
                   +N  D+            +++    I+     V T  GR V YD L+IATG 
Sbjct: 55  EKTAEDISLNRNDWYEENGITLYTGEKVIQ---IDRANKVVTTDAGRTVSYDKLIIATGS 111

Query: 111 --HKDPVP-----------------KTRTERLNQYQA----GGPTGVELA-GEIAVDFPE 146
                P+P                        N+ +A    GG  G+E A G   +    
Sbjct: 112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME- 170

Query: 147 KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE------GSDTYL 200
             VT+VH    L+E    +  D+T   L+ +K++  LG +V L+  +E        +   
Sbjct: 171 --VTVVHIAPTLME----RQLDRTAGRLLRRKLE-DLGIKVLLEKNTEEIVGEDKVEGVR 223

Query: 201 TSTGDTINADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIG 258
            + G  I AD   +  G +P       D + K++ L  +  ++V++ ++     +I+A+G
Sbjct: 224 FADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTS-DPDIYAVG 276

Query: 259 DITDIR 264
           +  + R
Sbjct: 277 ECAEHR 282

Length = 793

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYF--EITWASLRAMVEPSFGKRSVINH 70
           K VVV+G G  G   A++       VTLI+  +    ++    +   +     K  V   
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELL 196

Query: 71  TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGG 130
               V G  V      +    V+  +G  +  D ++I  G +   P              
Sbjct: 197 LGTKVVG--VEGKGNTLVVERVVGIDGEEIKADLVIIGPGER---PNVVL-----ANDAL 246

Query: 131 PTGVELAGEIAVD 143
           P      G + VD
Sbjct: 247 PGLALAGGAVLVD 259

Length = 415

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 25/194 (12%)

Query: 91  EVLTAEGRRVV-YDYLVIATGHKD-----PVPKTRTERLNQYQA--------------GG 130
            V    G   +    ++IATG +      P        +    A              GG
Sbjct: 120 SVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGG 179

Query: 131 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190
             GVE A  I       KVT++    R+L     +     +  L  K V +    +V   
Sbjct: 180 VIGVEFA-SIFASL-GSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTAV 237

Query: 191 SVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 248
             ++   TY    G+  T+  +   +  G+   ++ L    L   LD  G ++VDE +R 
Sbjct: 238 EKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRT 297

Query: 249 KGQKNIFAIGDITD 262
                I+AIGD+  
Sbjct: 298 NVP-GIYAIGDVIG 310

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PLN02546	558	glutathione reductase	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.98
PTZ00052	499	thioredoxin reductase; Provisional	99.98
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.98
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.98
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.97
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.97
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.97
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.97
PRK10262	321	thioredoxin reductase; Provisional	99.96
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.96
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.96
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.96
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.96
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.95
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.95
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.94
PRK12831	464	putative oxidoreductase; Provisional	99.94
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.94
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.93
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.93
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.93
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.91
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.89
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.89
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.89
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.89
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.88
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.88
PRK13984	604	putative oxidoreductase; Provisional	99.87
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.87
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.86
PLN02852	491	ferredoxin-NADP+ reductase	99.86
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.85
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.84
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.76
KOG2755	334	consensus Oxidoreductase [General function predict	99.75
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.73
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.73
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.71
COG2081	408	Predicted flavoproteins [General function predicti	99.69
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.62
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.62
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.6
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.56
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.56
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.52
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.5
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.48
COG0579	429	Predicted dehydrogenase [General function predicti	99.4
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.4
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.38
PRK10157	428	putative oxidoreductase FixC; Provisional	99.38
PRK06847	375	hypothetical protein; Provisional	99.36
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.34
PRK10015	429	oxidoreductase; Provisional	99.34
PTZ00188	506	adrenodoxin reductase; Provisional	99.33
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.33
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.31
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.3
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.29
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.28
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.27
PRK08163	396	salicylate hydroxylase; Provisional	99.27
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.27
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.25
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.25
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.23
PRK07190	487	hypothetical protein; Provisional	99.23
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.23
PRK08013	400	oxidoreductase; Provisional	99.23
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.23
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.22
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.22
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.22
PLN02463	447	lycopene beta cyclase	99.21
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.21
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.21
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.2
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.2
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.19
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.19
PRK05257	494	malate:quinone oxidoreductase; Validated	99.18
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.18
PRK09126	392	hypothetical protein; Provisional	99.18
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.18
PRK05868	372	hypothetical protein; Validated	99.17
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.16
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.16
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.15
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.14
PRK06184	502	hypothetical protein; Provisional	99.14
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.13
PRK07588	391	hypothetical protein; Provisional	99.13
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.12
PRK06834	488	hypothetical protein; Provisional	99.12
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.12
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.12
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.11
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.11
PRK06753	373	hypothetical protein; Provisional	99.1
PRK07233	434	hypothetical protein; Provisional	99.09
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.09
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.08
PRK07045	388	putative monooxygenase; Reviewed	99.08
PRK08244	493	hypothetical protein; Provisional	99.08
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.06
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.06
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.05
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.05
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.05
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.05
PRK07236	386	hypothetical protein; Provisional	99.04
PRK09897	534	hypothetical protein; Provisional	99.04
PRK08274	466	tricarballylate dehydrogenase; Validated	99.04
PRK06996	398	hypothetical protein; Provisional	99.03
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.03
PRK06185	407	hypothetical protein; Provisional	99.03
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.02
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.02
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.02
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.02
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.01
PRK06475	400	salicylate hydroxylase; Provisional	99.01
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.01
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.0
PRK06126	545	hypothetical protein; Provisional	98.99
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.99
PRK06175	433	L-aspartate oxidase; Provisional	98.99
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.99
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.98
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.98
PLN02697	529	lycopene epsilon cyclase	98.98
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.97
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.96
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.96
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.95
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.94
PLN02268	435	probable polyamine oxidase	98.93
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.93
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.93
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.91
PRK11445	351	putative oxidoreductase; Provisional	98.9
PLN02661	357	Putative thiazole synthesis	98.9
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.89
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.89
PRK08401	466	L-aspartate oxidase; Provisional	98.89
PRK07538	413	hypothetical protein; Provisional	98.88
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.88
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.88
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.87
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.86
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.86
PRK07121	492	hypothetical protein; Validated	98.86
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.85
PLN02612	567	phytoene desaturase	98.85
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.85
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.84
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.83
PRK07804	541	L-aspartate oxidase; Provisional	98.83
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.81
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.79
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.79
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.78
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.78
KOG2853	509	consensus Possible oxidoreductase [General functio	98.78
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.77
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.77
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.77
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.76
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.75
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.74
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK08294	634	phenol 2-monooxygenase; Provisional	98.72
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.71
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.71
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.7
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.67
PLN02487	569	zeta-carotene desaturase	98.66
PRK07395	553	L-aspartate oxidase; Provisional	98.66
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.66
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.65
PRK08071	510	L-aspartate oxidase; Provisional	98.65
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.64
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.63
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.61
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.6
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.59
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.57
PRK07208	479	hypothetical protein; Provisional	98.57
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.57
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.57
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.56
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.56
PRK08275	554	putative oxidoreductase; Provisional	98.55
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.55
PRK07512	513	L-aspartate oxidase; Provisional	98.55
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.53
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.53
PLN02815	594	L-aspartate oxidase	98.52
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.49
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.48
COG3349	485	Uncharacterized conserved protein [Function unknow	98.45
PLN02576	496	protoporphyrinogen oxidase	98.43
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.42
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.41
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.39
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.39
PLN02568	539	polyamine oxidase	98.39
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.37
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.36
PTZ00367	567	squalene epoxidase; Provisional	98.31
PLN02985	514	squalene monooxygenase	98.27
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.25
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.25
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.2
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.2
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.2
KOG2852	380	consensus Possible oxidoreductase [General functio	98.18
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.16
PLN02676	487	polyamine oxidase	98.15
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.11
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.1
PLN02529	738	lysine-specific histone demethylase 1	98.09
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.09
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.08
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.08
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.07
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.06
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.05
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.04
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.03
PRK07846	451	mycothione reductase; Reviewed	98.03
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.02
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.02
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.01
PRK09077	536	L-aspartate oxidase; Provisional	98.01
PRK06116	450	glutathione reductase; Validated	98.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.0
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.99
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.99
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.97
PRK02106	560	choline dehydrogenase; Validated	97.97
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.95
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.95
PRK12839	572	hypothetical protein; Provisional	97.93
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.93
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.91
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.91
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.9
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.9
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.9
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.88
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.87
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.87
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.86
PRK14694	468	putative mercuric reductase; Provisional	97.86
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.85
PLN02507	499	glutathione reductase	97.83
PRK06370	463	mercuric reductase; Validated	97.83
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.82
TIGR02053	463	MerA mercuric reductase. This model represents the	97.81
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.79
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.78
PLN03000	881	amine oxidase	97.76
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.76
PLN02976	1713	amine oxidase	97.74
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.74
PTZ00058	561	glutathione reductase; Provisional	97.74
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.71
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.7
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.68
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.67
PTZ00052	499	thioredoxin reductase; Provisional	97.66
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.63
PRK13748	561	putative mercuric reductase; Provisional	97.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.62
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.61
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.59
PRK14727	479	putative mercuric reductase; Provisional	97.59
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.54
PLN02546	558	glutathione reductase	97.53
COG3573	552	Predicted oxidoreductase [General function predict	97.53
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.5
PLN02785	587	Protein HOTHEAD	97.49
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.49
PRK10262	321	thioredoxin reductase; Provisional	97.4
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.39
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.35
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.29
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.12
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.09
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.08
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.01
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.99
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	96.98
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.82
PRK12831	464	putative oxidoreductase; Provisional	96.82
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.76
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.73
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.7
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.69
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.65
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.65
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.63
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.59
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.58
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.58
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.56
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.43
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.42
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.32
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.28
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.26
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.25
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.25
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.21
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.17
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.14
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.14
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.03
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.97
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.82
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.8
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.78
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.77
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.75
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.67
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.66
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.61
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.6
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.59
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.58
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.58
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.56
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.53
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.43
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.4
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.4
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.31
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.27
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.21
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.21
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.18
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.18
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.18
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.17
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.14
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.12
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.11
PRK04148	134	hypothetical protein; Provisional	95.08
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.07
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.06
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.03
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.97
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	94.91
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.9
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.87
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.85
PLN02852	491	ferredoxin-NADP+ reductase	94.84
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	94.84
KOG2755	334	consensus Oxidoreductase [General function predict	94.81
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.66
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.6
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.53
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.53
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.53
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.49
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.48
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.48
PRK06223	307	malate dehydrogenase; Reviewed	94.44
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.41
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.41
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.4
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.39
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	94.35
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.33
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.3
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.28
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.24
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	94.23
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	94.22
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.15
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.14
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.14
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.08
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.07
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.07
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.05
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.96
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.96
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.9
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.9
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	93.81
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.79
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.79
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.78
PTZ00117	319	malate dehydrogenase; Provisional	93.76
COG4716	587	Myosin-crossreactive antigen [Function unknown]	93.75
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	93.7
PRK07417	279	arogenate dehydrogenase; Reviewed	93.68
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.66
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.64
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.61
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.6
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	93.53
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.52
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.44
PLN02676	487	polyamine oxidase	93.42
PRK09496	453	trkA potassium transporter peripheral membrane com	93.35
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.31
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.28
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.27
PLN02494	477	adenosylhomocysteinase	93.22
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	93.22
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.2
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.15
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.15
PRK10669	558	putative cation:proton antiport protein; Provision	93.07
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.05
PLN02602	350	lactate dehydrogenase	93.02
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.9
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.82
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.8
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.77

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.5e-36  Score=253.89  Aligned_cols=258  Identities=24%  Similarity=0.306  Sum_probs=200.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc---c-----ccc-------cccC----C-------ccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW---A-----SLR-------AMVE----P-------SFG   63 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~---~-----~~~-------~~~~----~-------~~~   63 (275)
                      +..||++||||||+|..+|..++ .|.+|.++|+.+.+|+..   +     .+.       ....    .       .+.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id   81 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID   81 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence            34699999999999999999998 688899999996555221   0     000       0000    0       000


Q ss_pred             ccccccccc------------c--ccccEEEEeeeeEeecCeEEecC--CeEEeCCEEEEccCCCCCCCchH--------
Q 023957           64 KRSVINHTD------------Y--LVNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPKTR--------  119 (275)
Q Consensus        64 ~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~lilatG~~~~~~~~~--------  119 (275)
                      ......+.+            +  ..+++++.+.....+++++....  .+.+.++++++|||+.|..|+..        
T Consensus        82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~  161 (454)
T COG1249          82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARIL  161 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEE
Confidence            000111000            0  12688899999998888877765  47899999999999998776521        


Q ss_pred             -H-H--HHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          120 -T-E--RLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       120 -~-~--~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                       . +  .+.++++      +|++|+|+|..+.  ..|.+|+++++.+.+++.+++++.+.+.+.+++.|++++++++++.
T Consensus       162 ~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~  239 (454)
T COG1249         162 DSSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA  239 (454)
T ss_pred             echhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence             1 1  1123333      9999999999999  7899999999999999999999999999999998899999999999


Q ss_pred             ecCCCCCceEEcCCCc--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          190 DSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       190 i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ++..++.+.+.+++|+  ++++|.+++|+|.+||.+-+.....+++++++|+|.||..++| |.|+|||+|||+..|..+
T Consensus       240 ~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~La  318 (454)
T COG1249         240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPMLA  318 (454)
T ss_pred             EEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcccH
Confidence            9887766778887776  7999999999999999987776777779999999999966666 899999999999888877


Q ss_pred             CCCC
Q 023957          268 SMIF  271 (275)
Q Consensus       268 ~~~~  271 (275)
                      +.+.
T Consensus       319 h~A~  322 (454)
T COG1249         319 HVAM  322 (454)
T ss_pred             hHHH
Confidence            6554

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=2.5e-35  Score=253.44  Aligned_cols=251  Identities=22%  Similarity=0.300  Sum_probs=188.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc-----------c---------cC---Ccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA-----------M---------VE---PSFGK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~-----------~---------~~---~~~~~   64 (275)
                      ..|||+||||||+|++||..|+ .|++|+|||+.. +|+....   ++.           .         ..   .....
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW   81 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence            3589999999999999999998 699999999974 4432110   000           0         00   00000


Q ss_pred             cccccc------------cccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH-------HHH
Q 023957           65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERL  123 (275)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~-------~~l  123 (275)
                      ..+...            .+.+  .+++++.+.+..++.+++.+ ++..+.||++|+|||+.|..|.++.       ..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~  160 (450)
T PRK06116         82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGF  160 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHh
Confidence            000000            0001  26788888888888888877 6778999999999999987665431       111


Q ss_pred             HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ..+.   +      +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+++.|++++.++.|.+++.++
T Consensus       161 ~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~  238 (450)
T PRK06116        161 FALEELPKRVAVVGAGYIAVEFAGVLN--GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA  238 (450)
T ss_pred             hCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC
Confidence            1111   1      8899999999998  568999999999888888888899999999999999999999999998654


Q ss_pred             CC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          195 GS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       195 ~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +. ..+.+.+|+++++|.||+|+|.+|+.+.+.....+++++++|++.||++++| ++|+|||+|||+..+...
T Consensus       239 ~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~  311 (450)
T PRK06116        239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELT  311 (450)
T ss_pred             CceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcH
Confidence            44 5677788889999999999999999886543334457788899999999998 899999999999765443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=4.1e-35  Score=251.48  Aligned_cols=254  Identities=23%  Similarity=0.281  Sum_probs=187.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC-Ccccccccccccc----------CCcccc-----ccc-c------
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWASLRAMV----------EPSFGK-----RSV-I------   68 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~-~~~~~~~~~~~~~----------~~~~~~-----~~~-~------   68 (275)
                      .|||+||||||+|++||.+|+ .|.+|+|||+.+ .+|+.+.......          ...+..     +.. .      
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN   82 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence            589999999999999999998 699999999975 3554432111100          000000     000 0      


Q ss_pred             -cccccccccEEEEeeeeEeecC--eEEecCCe-EEeCCEEEEccCCCCCCCchHH----------HHHHHHh---c---
Q 023957           69 -NHTDYLVNGRIVASPAINITEN--EVLTAEGR-RVVYDYLVIATGHKDPVPKTRT----------ERLNQYQ---A---  128 (275)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~lilatG~~~~~~~~~~----------~~l~~~~---~---  128 (275)
                       .......+++++.+.+..++.+  .+.+.++. .+.||++++|||+.|..|+++.          ..+..+.   +   
T Consensus        83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~  162 (441)
T PRK08010         83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG  162 (441)
T ss_pred             HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence             0001123678888887777766  34445664 6899999999999876554321          1111111   1   


Q ss_pred             ---CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc
Q 023957          129 ---GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD  205 (275)
Q Consensus       129 ---~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~  205 (275)
                         +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|++++.++.|++++.+++.+.+..+++ 
T Consensus       163 ViGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-  239 (441)
T PRK08010        163 ILGGGYIGVEFASMFA--NFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-  239 (441)
T ss_pred             EECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence               8889999999998  5689999999999888877888889999999999999999999999987655555655555 


Q ss_pred             EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023957          206 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  270 (275)
Q Consensus       206 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~~  270 (275)
                      ++++|.|++|+|.+|+..++.....+++++++|++.||+++|| ++|+|||+|||+..+...+.+
T Consensus       240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a  303 (441)
T PRK08010        240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYIS  303 (441)
T ss_pred             eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHH
Confidence            4899999999999999887654444557788899999999999 899999999999877665543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=8.3e-35  Score=251.19  Aligned_cols=256  Identities=23%  Similarity=0.290  Sum_probs=190.6

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc---------------C-Ccc---------c
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV---------------E-PSF---------G   63 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~---------------~-~~~---------~   63 (275)
                      ...+|||+||||||+|++||++|+ .|++|+|||+++.+|+.+.......               . ..+         .
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT   81 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence            345699999999999999999998 6999999999877765432110000               0 000         0


Q ss_pred             cccccc------------cccc--ccccEEEEeeeeEeecCe--EEecCCe--EEeCCEEEEccCCCCCCCchH------
Q 023957           64 KRSVIN------------HTDY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR------  119 (275)
Q Consensus        64 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~~~lilatG~~~~~~~~~------  119 (275)
                      ...+..            ..+.  ..+++++.+.+..++.++  +...++.  .+.||++|+|||+.|..|+..      
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~  161 (461)
T PRK05249         82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPR  161 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCe
Confidence            000000            0001  125677777777677664  4444553  789999999999998766421      


Q ss_pred             ---HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957          120 ---TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       120 ---~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                         .+.+..+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|
T Consensus       162 v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v  239 (461)
T PRK05249        162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFA--ALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV  239 (461)
T ss_pred             EEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence               11121111   1      8899999999998  56899999999999988888999999999999999999999999


Q ss_pred             eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ++++.+++.+.+.+.+|+++++|.|++|+|.+|+..++.....++.++++|++.||+++|| +.|+|||+|||+..|...
T Consensus       240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~  318 (461)
T PRK05249        240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLA  318 (461)
T ss_pred             EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccH
Confidence            9998665566677778888999999999999999886544444557788899999999998 899999999999866544


Q ss_pred             C
Q 023957          268 S  268 (275)
Q Consensus       268 ~  268 (275)
                      .
T Consensus       319 ~  319 (461)
T PRK05249        319 S  319 (461)
T ss_pred             h
Confidence            3

>PLN02507 glutathione reductase

Probab=100.00  E-value=1e-34  Score=251.04  Aligned_cols=255  Identities=22%  Similarity=0.252  Sum_probs=188.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCccccccc--------c----------ccc----c
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWAS--------L----------RAM----V   58 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~---------~~~~~~~~~--------~----------~~~----~   58 (275)
                      ..+|||+||||||+|+.+|..+. .|.+|+|||+.         ..+|+.+..        +          ...    .
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            34699999999999999999998 69999999962         334533211        0          000    0


Q ss_pred             C----Ccccccccccc--------c----cc--ccccEEEEeeeeEeecC--eEEecCCe--EEeCCEEEEccCCCCCCC
Q 023957           59 E----PSFGKRSVINH--------T----DY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        59 ~----~~~~~~~~~~~--------~----~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~lilatG~~~~~~  116 (275)
                      .    ..+....+...        .    ..  ..+++++.+.+..++.+  .+...+++  .+.||+||+|||+.|..|
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p  182 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP  182 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence            0    00000000100        0    00  13678888888888877  44445654  588999999999987655


Q ss_pred             chH-------HHH---HHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957          117 KTR-------TER---LNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  180 (275)
Q Consensus       117 ~~~-------~~~---l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  180 (275)
                      .++       .+.   ++.+.+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+
T Consensus       183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~  260 (499)
T PLN02507        183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWR--GMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN  260 (499)
T ss_pred             CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence            432       111   111112      8899999999998  6789999999998888778888999999999999999


Q ss_pred             EEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccc
Q 023957          181 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  260 (275)
Q Consensus       181 i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~  260 (275)
                      ++.++.|++++.+++.+.+.+.+|+++++|.|++++|++|+..++.....+++++++|++.||+++|| +.|+|||+|||
T Consensus       261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv  339 (499)
T PLN02507        261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV  339 (499)
T ss_pred             EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence            99999999998655566677778888999999999999999887543444457778899999999998 99999999999


Q ss_pred             cCCCCCCC
Q 023957          261 TDIRVSAS  268 (275)
Q Consensus       261 ~~~~~~~~  268 (275)
                      ++.+...+
T Consensus       340 ~~~~~l~~  347 (499)
T PLN02507        340 TNRINLTP  347 (499)
T ss_pred             CCCCccHH
Confidence            98665444

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.1e-34  Score=248.69  Aligned_cols=253  Identities=20%  Similarity=0.227  Sum_probs=186.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc-----------cc----------C-Ccccc--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA-----------MV----------E-PSFGK--   64 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~-----------~~----------~-~~~~~--   64 (275)
                      +|||+||||||+|++||..++ .|++|+|+|++. +|+....   .+.           ..          . ..+..  
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            589999999999999999998 699999999964 4432110   000           00          0 00000  


Q ss_pred             ------ccccccc----ccc--cccEEEEeeeeEeecCeEEe-cCCeEEeCCEEEEccCCCCCCCchHH-------HHHH
Q 023957           65 ------RSVINHT----DYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRT-------ERLN  124 (275)
Q Consensus        65 ------~~~~~~~----~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~lilatG~~~~~~~~~~-------~~l~  124 (275)
                            .......    ..+  .+++++.+++..++.+++.. .++..+.||++|+|||+.|..|.++.       ....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~  160 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF  160 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence                  0000000    011  26788888887787765443 35678999999999999976654321       1111


Q ss_pred             HH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          125 QY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       125 ~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      .+   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++..++
T Consensus       161 ~l~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  238 (446)
T TIGR01424       161 HLPTLPKSILILGGGYIAVEFAGIWR--GLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD  238 (446)
T ss_pred             cccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence            11   11      8889999999998  5689999999999888878888888899999999999999999999986555


Q ss_pred             CceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957          196 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       196 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      ...+.+.+|+++++|.||+|+|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+...+.
T Consensus       239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~  311 (446)
T TIGR01424       239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTPV  311 (446)
T ss_pred             eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchhH
Confidence            56677778888999999999999999876544444557788899999999999 89999999999976655443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=6.5e-35  Score=249.94  Aligned_cols=251  Identities=19%  Similarity=0.199  Sum_probs=185.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc---cccc-----------------c--cC----Cccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA---SLRA-----------------M--VE----PSFGKR   65 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~---~~~~-----------------~--~~----~~~~~~   65 (275)
                      .|||+||||||+|++||..|+ .|++|+|||+.. +|+...   ..+.                 .  ..    ......
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP   80 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence            589999999999999999998 699999999965 443211   1100                 0  00    000000


Q ss_pred             cccc------------ccccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCC-chH-------HHHH
Q 023957           66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTR-------TERL  123 (275)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~-~~~-------~~~l  123 (275)
                      .+..            ....+  .+++++.+.....+.+++.. ++..+.||++|+|||+.|..| .++       .+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~  159 (450)
T TIGR01421        81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF  159 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence            0000            00001  25677777766666666665 466799999999999998766 332       1122


Q ss_pred             HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ..+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||++++++.+++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~  237 (450)
T TIGR01421       160 FALEELPKRVVIVGAGYIAVELAGVLH--GLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV  237 (450)
T ss_pred             hCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence            1111   1      8999999999998  568999999999988888888999999999999999999999999997654


Q ss_pred             CC-ceEEcCCC-cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          195 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       195 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      +. ..+.+++| +.+++|.|++++|++|+.+++.....+++++++|++.||++++| +.|+|||+|||++.+...+
T Consensus       238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~  312 (450)
T TIGR01421       238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTP  312 (450)
T ss_pred             CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHH
Confidence            33 55677777 57999999999999999887654555567888999999999998 8999999999998765443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=6.7e-34  Score=233.65  Aligned_cols=248  Identities=31%  Similarity=0.438  Sum_probs=189.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCcccccccccccccc---cccEEEEeeeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   86 (275)
                      +++|||||||++|+.+|..|.+   +.+|++||+++.+-+.+....-............++...+   .+++++.+++.+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~   82 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD   82 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence            4789999999999999999973   3889999999986544332211111111112222222222   258889999998


Q ss_pred             eecC--eEEecCCeEEeCCEEEEccCCCCCC---CchH-----------H----H----HHHHHh------c--------
Q 023957           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPV---PKTR-----------T----E----RLNQYQ------A--------  128 (275)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~lilatG~~~~~---~~~~-----------~----~----~l~~~~------~--------  128 (275)
                      +|.+  +|.+.++..+.||+||+|+|+.+..   |+..           .    .    .++...      .        
T Consensus        83 ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvG  162 (405)
T COG1252          83 IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVG  162 (405)
T ss_pred             EcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEEC
Confidence            8754  8999887889999999999998543   3311           0    0    111111      1        


Q ss_pred             CCcchhhHHHHHhhhCC-----------CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc
Q 023957          129 GGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  197 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  197 (275)
                      +|++|+|+|.+|.+...           ..++.++++.+.+++.+++.+.+..++.|+++||++++++.|++++.+.   
T Consensus       163 gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~---  239 (405)
T COG1252         163 GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG---  239 (405)
T ss_pred             CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc---
Confidence            89999999988876422           2389999999999999999999999999999999999999999998654   


Q ss_pred             eEEcCCCc-EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          198 TYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       198 ~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                       +++++|. +|+|+.+|+++|.+++ ++++.. .+.+.+..|++.||++++++++|+||++|||+..++.
T Consensus       240 -v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~  306 (405)
T COG1252         240 -VTLKDGEEEIPADTVVWAAGVRAS-PLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP  306 (405)
T ss_pred             -EEEccCCeeEecCEEEEcCCCcCC-hhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence             7788887 5999999999999984 566653 1246778899999999999999999999999988875

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.3e-34  Score=249.67  Aligned_cols=255  Identities=20%  Similarity=0.238  Sum_probs=184.2

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--ccccc--------------------cccC---Cccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASLR--------------------AMVE---PSFG   63 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~~--------------------~~~~---~~~~   63 (275)
                      |..+|||+||||||+|++||..|+ .|++|+|||+....|..  ++..+                    +...   ....
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD   81 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence            444699999999999999999998 69999999997544321  11000                    0000   0000


Q ss_pred             ccccc------------cccccc---cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH--------
Q 023957           64 KRSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------  120 (275)
Q Consensus        64 ~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~--------  120 (275)
                      ...+.            ....++   .+++++.+.....+.+++.. ++..+.||++|+|||+.|..|+++.        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~  160 (463)
T PRK06370         82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLT  160 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEc
Confidence            00000            001111   26777777776667677766 4567999999999999977665321        


Q ss_pred             -HHHHH---Hhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957          121 -ERLNQ---YQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       121 -~~l~~---~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                       ..+..   ..+      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|+++++++.|.++
T Consensus       161 ~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i  238 (463)
T PRK06370        161 NETIFSLDELPEHLVIIGGGYIGLEFAQMFR--RFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRV  238 (463)
T ss_pred             chHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence             11111   111      8899999999998  56899999999998888788888899999999999999999999999


Q ss_pred             cCCCCCceEEc--C-CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          191 SVSEGSDTYLT--S-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       191 ~~~~~~~~v~~--~-~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +.+++...+.+  . ++.++++|.||+|+|.+|+...+.....+++++++|++.||+++|| +.|+|||+|||+..+...
T Consensus       239 ~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~  317 (463)
T PRK06370        239 ERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFT  317 (463)
T ss_pred             EEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccH
Confidence            87655444433  2 3457999999999999999874432333446788899999999999 899999999999876554


Q ss_pred             C
Q 023957          268 S  268 (275)
Q Consensus       268 ~  268 (275)
                      .
T Consensus       318 ~  318 (463)
T PRK06370        318 H  318 (463)
T ss_pred             H
Confidence            3

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=5.4e-34  Score=244.17  Aligned_cols=252  Identities=21%  Similarity=0.325  Sum_probs=187.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc--cccccc--------------------ccc-C-Ccccccc--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI--TWASLR--------------------AMV-E-PSFGKRS--   66 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~--~~~~~~--------------------~~~-~-~~~~~~~--   66 (275)
                      +||++||||||+|.+||..+ .|.+|+|||++...|.  .++-.+                    +.. . ..+....  
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV   79 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence            38999999999999988764 5999999999764331  010000                    000 0 0000000  


Q ss_pred             ------cccc----cccc----cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchH---------HHHH
Q 023957           67 ------VINH----TDYL----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TERL  123 (275)
Q Consensus        67 ------~~~~----~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~---------~~~l  123 (275)
                            ....    ....    .+++++.+.....+.+++.+.+++.+.||++|+|||+.|..|+++         .+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~  159 (451)
T PRK07846         80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI  159 (451)
T ss_pred             HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHH
Confidence                  0000    1111    367888888888888889888787899999999999997766532         1112


Q ss_pred             HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ..+.   +      +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+ +.|+++++++.+++++.++
T Consensus       160 ~~l~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~  236 (451)
T PRK07846        160 MRLPELPESLVIVGGGFIAAEFAHVFS--ALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG  236 (451)
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC
Confidence            2221   1      8999999999998  5789999999999888878888887777655 4689999999999998665


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      +.+.+.+.+|+++++|.|++|+|.+|+.+++.....+++++++|++.||+++|| ++|+|||+|||+..+..+..
T Consensus       237 ~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~  310 (451)
T PRK07846        237 SGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHV  310 (451)
T ss_pred             CEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhH
Confidence            556677778889999999999999999988765445567888999999999998 89999999999987765543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=7.4e-33  Score=235.86  Aligned_cols=246  Identities=27%  Similarity=0.350  Sum_probs=184.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccc-ccccccccccc--cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      .+++|||||||+||+.+|..|. .+.+|+|||+++.+.+... +......... .....+....+  .+++++.+++..+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPL-LPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhh-HHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence            3579999999999999999997 4789999999998765432 2222221111 11111111111  2567888988888


Q ss_pred             ecC--eEEe----------cCCeEEeCCEEEEccCCCCCC---CchHH---------------HHHHHH-----------
Q 023957           88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDPV---PKTRT---------------ERLNQY-----------  126 (275)
Q Consensus        88 ~~~--~v~~----------~~~~~~~~~~lilatG~~~~~---~~~~~---------------~~l~~~-----------  126 (275)
                      +..  .+.+          .++.++.||+||+|||+.+..   |+...               +.+...           
T Consensus        88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~  167 (424)
T PTZ00318         88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV  167 (424)
T ss_pred             EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence            754  5655          456789999999999998543   33210               111110           


Q ss_pred             ---h---c-----CCcchhhHHHHHhhhC------------CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEc
Q 023957          127 ---Q---A-----GGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  183 (275)
Q Consensus       127 ---~---~-----~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  183 (275)
                         .   .     +|.+|+|+|..+....            .+.+++++++.+.+++.+++.+.+.+.+.++++||+++.
T Consensus       168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~  247 (424)
T PTZ00318        168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT  247 (424)
T ss_pred             HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence               0   2     7889999999887532            468999999999888888888899999999999999999


Q ss_pred             CceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          184 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       184 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      +++|.++..+    .+.+++|+++++|.+|+++|.+|+ +++...++  +++++|++.||+++|++++|+|||+|||+..
T Consensus       248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~  320 (424)
T PTZ00318        248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN  320 (424)
T ss_pred             CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence            9999999743    377889999999999999999996 56665554  6677899999999997799999999999987


Q ss_pred             CC
Q 023957          264 RV  265 (275)
Q Consensus       264 ~~  265 (275)
                      +.
T Consensus       321 ~~  322 (424)
T PTZ00318        321 EE  322 (424)
T ss_pred             CC
Confidence            54

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9e-34  Score=244.23  Aligned_cols=252  Identities=17%  Similarity=0.209  Sum_probs=185.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc---------------c----cC---Cccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA---------------M----VE---PSFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~---------------~----~~---~~~~~~   65 (275)
                      .+|||+||||||+|++||..|+ .|++|+|||+.+.+|+....   ++.               .    +.   ..+...
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            4599999999999999999998 69999999998666542210   000               0    00   000000


Q ss_pred             cccccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCC-CCchH-------
Q 023957           66 SVINHT------------DY--LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKTR-------  119 (275)
Q Consensus        66 ~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~-~~~~~-------  119 (275)
                      .+..+.            ..  ..+++++.+.+..++.+++..  .++  ..+.||++|+|||+.|. .|..+       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~  162 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW  162 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence            010000            00  126788888888877775444  345  47899999999999976 33221       


Q ss_pred             -HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          120 -TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       120 -~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                       ......+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++. ++++.++.|+.
T Consensus       163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~  239 (471)
T PRK06467        163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYH--RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA  239 (471)
T ss_pred             ChHHhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence             11111111   1      8899999999998  6799999999999998888889999999999888 99999999999


Q ss_pred             ecCCCCCceEEcCC--C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          190 DSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       190 i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++..++...+.+.+  +  +++++|.|++++|.+|+.+++.....+++++++|++.||++++| +.|+|||+|||+..|.
T Consensus       240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~  318 (471)
T PRK06467        240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM  318 (471)
T ss_pred             EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence            98665555565443  2  36999999999999999887655555567888999999999999 8999999999997665


Q ss_pred             CC
Q 023957          266 SA  267 (275)
Q Consensus       266 ~~  267 (275)
                      ..
T Consensus       319 la  320 (471)
T PRK06467        319 LA  320 (471)
T ss_pred             cH
Confidence            43

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=7.2e-34  Score=244.32  Aligned_cols=257  Identities=21%  Similarity=0.213  Sum_probs=188.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCC--------CCcccc---ccccc--------------------ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPK--------EYFEIT---WASLR--------------------AMV   58 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~--------~~~~~~---~~~~~--------------------~~~   58 (275)
                      .+|||+||||||+|..||..++ . |.+|+|||++        ..+|+.   ++-.+                    +..
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            4699999999999999999997 4 8999999984        344421   10000                    000


Q ss_pred             ----CCcccccccccc------------cccc---cccEEEEeeeeEeecCeEEecC--------CeEEeCCEEEEccCC
Q 023957           59 ----EPSFGKRSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH  111 (275)
Q Consensus        59 ----~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~lilatG~  111 (275)
                          ...+....+..+            .+.+   .+++++.+.....+++++....        .+.+.||++|+|||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence                000000000000            0112   3688899998888888666532        247999999999999


Q ss_pred             CCCCCchHH-H------HHHHHh---c------CCcchhhHHHHHhhh-CCCCEEEEEeCCCcccCcCCcchHHHHHHHH
Q 023957          112 KDPVPKTRT-E------RLNQYQ---A------GGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL  174 (275)
Q Consensus       112 ~~~~~~~~~-~------~l~~~~---~------~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  174 (275)
                      .|..|+++. +      .+..+.   +      +|.+|+|+|..+... ..+.+|+++++.+.+++.+++++.+.+.+.+
T Consensus       162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L  241 (486)
T TIGR01423       162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL  241 (486)
T ss_pred             CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence            987665431 1      111111   1      889999999876532 2388999999999988888999999999999


Q ss_pred             HhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCC
Q 023957          175 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  253 (275)
Q Consensus       175 ~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~  253 (275)
                      ++.|++++.++.+++++..++. ..+.+.+|+++++|.|++++|.+|+...+.....+++++++|+|.||+++|| +.|+
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~  320 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN  320 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence            9999999999999999765333 4566777888999999999999999887654444557788899999999998 8999


Q ss_pred             eEEeccccCCCCCCCC
Q 023957          254 IFAIGDITDIRVSASM  269 (275)
Q Consensus       254 v~a~Gd~~~~~~~~~~  269 (275)
                      |||+|||++.+...+.
T Consensus       321 IyA~GDv~~~~~l~~~  336 (486)
T TIGR01423       321 IYAIGDVTDRVMLTPV  336 (486)
T ss_pred             EEEeeecCCCcccHHH
Confidence            9999999987665543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.3e-32  Score=235.33  Aligned_cols=242  Identities=16%  Similarity=0.293  Sum_probs=182.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-ccccccc--cccc--cccEEE-Eeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPA   84 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~   84 (275)
                      ++|+|||||++|++||..|+   ++.+|+|||+++.+++....++........ .......  ..+.  .++++. ..++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            48999999999999999997   378999999999877654333332221111 1111111  1111  256664 4667


Q ss_pred             eEeecC--eEEecCC---e--EEeCCEEEEccCCCCCCCchH------------HHHHHHHh-----c------CCcchh
Q 023957           85 INITEN--EVLTAEG---R--RVVYDYLVIATGHKDPVPKTR------------TERLNQYQ-----A------GGPTGV  134 (275)
Q Consensus        85 ~~~~~~--~v~~~~~---~--~~~~~~lilatG~~~~~~~~~------------~~~l~~~~-----~------~g~~~~  134 (275)
                      ..++..  ++.+.++   .  ++.||+||+|||+.|..|+.+            ...+..+.     +      +|.+|+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~  161 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL  161 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence            777644  5555432   2  468999999999998766532            11122111     1      889999


Q ss_pred             hHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEE
Q 023957          135 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  214 (275)
Q Consensus       135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  214 (275)
                      |+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.++.|++++.    ..+++++|+.+++|.|++
T Consensus       162 E~A~~l~--~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~  235 (438)
T PRK13512        162 EVLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE  235 (438)
T ss_pred             HHHHHHH--hCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence            9999998  6789999999999888888888999999999999999999999999963    246677888899999999


Q ss_pred             cCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          215 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       215 a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      |+|.+|+.++++..++  +++++|++.||+++|| ++|+|||+|||+..+
T Consensus       236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~  282 (438)
T PRK13512        236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSH  282 (438)
T ss_pred             CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEee
Confidence            9999999998877655  6677899999999998 899999999999743

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.2e-33  Score=242.31  Aligned_cols=250  Identities=22%  Similarity=0.274  Sum_probs=183.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---cccc-------------------cC---Cccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAM-------------------VE---PSFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~~-------------------~~---~~~~~~   65 (275)
                      ..|||+||||||+|++||..|+ .|++|+|+|++. +|+.+..   .++-                   ..   ......
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            4699999999999999999998 699999999987 5543211   1100                   00   000000


Q ss_pred             ccccc------------ccc--ccccEEEEeeeeEeecCeEEec--C-CeEEeCCEEEEccCCCCCCCc-hH--------
Q 023957           66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVPK-TR--------  119 (275)
Q Consensus        66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-~~~~~~~~lilatG~~~~~~~-~~--------  119 (275)
                      ....+            ...  ..+++++.+.+..++.+.+...  + +..+.||+||+|||+.|..|+ .+        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~  161 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence            00101            001  1267888888877777654443  2 367999999999999976442 21        


Q ss_pred             HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957          120 TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       120 ~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                      .+.....   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.+++|.++
T Consensus       162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYA--SLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             chHhhCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            1111111   11      8899999999998  56899999999999888888889999999999999999999999999


Q ss_pred             cCCCCCceEEcCCC---cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          191 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       191 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +.+++.+.+.+.+|   +++++|.||+|+|.+|+..++.....+++++ +|++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~  316 (462)
T PRK06416        240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPML  316 (462)
T ss_pred             EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcch
Confidence            87665666666665   6799999999999999988764333344666 899999999998 89999999999976543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=9.2e-33  Score=249.77  Aligned_cols=249  Identities=20%  Similarity=0.299  Sum_probs=191.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (275)
                      ++|+|||+|+||+.+|..|+     .+++|+||++++.+.|....++................+++  .+++++.+ .+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            58999999999999998885     25799999999998766555544333221122222222222  26777665 466


Q ss_pred             EeecC--eEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHH
Q 023957           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGE  139 (275)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~  139 (275)
                      .++..  .+.+.++..+.||+||+|||+.|..|+++            .+.+..+..            +|.+|+|+|..
T Consensus        84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~  163 (847)
T PRK14989         84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGA  163 (847)
T ss_pred             EEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHH
Confidence            66653  67778888899999999999997655422            122222211            88999999999


Q ss_pred             HhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC--CCceEEcCCCcEEeecEEEEcC
Q 023957          140 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCT  216 (275)
Q Consensus       140 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~  216 (275)
                      |.  ..+.+++++++.+.+++ .+++...+.+.+.++++||++++++.++++..++  ....+.+.+|+++++|.||+++
T Consensus       164 L~--~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        164 LK--NLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HH--HcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence            98  56889999999988776 5788889999999999999999999999997542  2345778899999999999999


Q ss_pred             CCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          217 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       217 G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      |.+|+..++...++  +++++|+|.||++++| +.|+|||+|||+..++..
T Consensus       242 G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~  289 (847)
T PRK14989        242 GIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRV  289 (847)
T ss_pred             CcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcc
Confidence            99999988776665  6678899999999999 899999999999886643

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=9.8e-34  Score=244.40  Aligned_cols=250  Identities=25%  Similarity=0.287  Sum_probs=182.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----------cccC-C---------ccccc---
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMVE-P---------SFGKR---   65 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----------~~~~-~---------~~~~~---   65 (275)
                      |||+||||||+|++||..|+ .|.+|+|||++. +|+.+...   +           .... .         .....   
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            69999999999999999998 699999999986 44332110   0           0000 0         00000   


Q ss_pred             ----cc-cc-----ccccc--cccEEEEeeeeEeecCeEEecCCe-EEeCCEEEEccCCCCCCCchHH---------HHH
Q 023957           66 ----SV-IN-----HTDYL--VNGRIVASPAINITENEVLTAEGR-RVVYDYLVIATGHKDPVPKTRT---------ERL  123 (275)
Q Consensus        66 ----~~-~~-----~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~lilatG~~~~~~~~~~---------~~l  123 (275)
                          .. ..     ....+  .+++++.+.+...+.+++...++. .+.+|++|+|||+.|..|.++.         +.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence                00 00     00111  257778888777777778776653 6789999999999977654321         111


Q ss_pred             HHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ...   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++...+.+.+++.||++++++.|++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~  237 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFA--RLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG  237 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence            111   11      8889999999998  568999999999988888888888999999999999999999999998665


Q ss_pred             CCceEEcC---CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          195 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       195 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +...+.+.   +++++++|.|++|+|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+...
T Consensus       238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~  312 (463)
T TIGR02053       238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLE  312 (463)
T ss_pred             CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccH
Confidence            54445443   2357999999999999999874333334446778899999999999 899999999999876543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=7e-33  Score=237.55  Aligned_cols=252  Identities=21%  Similarity=0.317  Sum_probs=186.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc--ccc-----cc---------------cccc-C-Cccc-----
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI--TWA-----SL---------------RAMV-E-PSFG-----   63 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~--~~~-----~~---------------~~~~-~-~~~~-----   63 (275)
                      +||++|||+||+|..||..+ .|.+|++||++...|-  .++     .+               .+.. . ....     
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~   80 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV   80 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence            58999999999999987554 5999999998764330  010     00               0000 0 0000     


Q ss_pred             ---c---c-ccccc-ccc-c----cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCch-H--------HH
Q 023957           64 ---K---R-SVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-R--------TE  121 (275)
Q Consensus        64 ---~---~-~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~-~--------~~  121 (275)
                         .   . ..... ..+ .    .+++++.+.....+.+++.+.++.++.||++|+|||+.|..|+. .        .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~  160 (452)
T TIGR03452        81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNE  160 (452)
T ss_pred             HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHH
Confidence               0   0 00000 111 1    47888888887778888888778789999999999999877652 1        12


Q ss_pred             HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      .+..+.   +      +|.+++|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.++ .|+++++++.|++++.
T Consensus       161 ~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~~  237 (452)
T TIGR03452       161 DIMRLPELPESLVIVGGGYIAAEFAHVFS--ALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAVEQ  237 (452)
T ss_pred             HHHhhhhcCCcEEEECCCHHHHHHHHHHH--hCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEEEE
Confidence            222222   2      8999999999998  56899999999988877778888877776554 6899999999999987


Q ss_pred             CCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957          193 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      +++.+.+.+.+|+++++|.|++++|.+|+.+++.....+++++++|++.||+++|| +.|+|||+|||+..+...+.
T Consensus       238 ~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~  313 (452)
T TIGR03452       238 DGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKHV  313 (452)
T ss_pred             cCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChhH
Confidence            66566677778888999999999999999988655444557788899999999998 99999999999987665543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=9.5e-33  Score=236.68  Aligned_cols=252  Identities=18%  Similarity=0.219  Sum_probs=181.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-cccccc---cccccc-----CCccccccccc------------c
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWA---SLRAMV-----EPSFGKRSVIN------------H   70 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~-~~~~~~---~~~~~~-----~~~~~~~~~~~------------~   70 (275)
                      .|||+||||||||++||..|+ .|++|+||||++. +|+...   .++...     ...........            .
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN   82 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999998 6999999999863 453211   111000     00000000000            0


Q ss_pred             ccc--ccccEEEEeeeeEeecCeEEecC---CeEEeCCEEEEccCCCCCCCchH----------HHHHHHHh---c----
Q 023957           71 TDY--LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTR----------TERLNQYQ---A----  128 (275)
Q Consensus        71 ~~~--~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~lilatG~~~~~~~~~----------~~~l~~~~---~----  128 (275)
                      .+.  ..+++++.+....++.+++....   ...+.||++|+|||+.|..|.++          ...+..+.   +    
T Consensus        83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI  162 (438)
T PRK07251         83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI  162 (438)
T ss_pred             HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence            011  12677787777777666665532   34789999999999987544322          11122221   1    


Q ss_pred             --CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcE
Q 023957          129 --GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT  206 (275)
Q Consensus       129 --~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~  206 (275)
                        +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|++++.+++|++++.+++.+.+. .+|++
T Consensus       163 IGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~  239 (438)
T PRK07251        163 IGGGNIGLEFAGLYN--KLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET  239 (438)
T ss_pred             ECCCHHHHHHHHHHH--HcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence              8899999999998  568999999999988887778888888899999999999999999998655444443 45678


Q ss_pred             EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          207 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       207 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      +++|.|++|+|.+|+.+.+.....++.++.+|++.||+++|| +.|+|||+|||+..+....
T Consensus       240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~  300 (438)
T PRK07251        240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTY  300 (438)
T ss_pred             EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHh
Confidence            999999999999999876554334446677899999999999 8999999999997655443

>PLN02546 glutathione reductase

Probab=100.00  E-value=3.4e-33  Score=242.69  Aligned_cols=254  Identities=19%  Similarity=0.214  Sum_probs=184.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCcccc--------ccccc---------------ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEIT--------WASLR---------------AMV   58 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~---------~~~~~~--------~~~~~---------------~~~   58 (275)
                      .+|||+|||||++|+.||..++ .|.+|+|+|+.         ..+|+.        ...+.               +..
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~  157 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK  157 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence            3589999999999999999998 69999999962         223311        00000               000


Q ss_pred             ---CCccccccccc------------ccccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH-
Q 023957           59 ---EPSFGKRSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-  120 (275)
Q Consensus        59 ---~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~-  120 (275)
                         ...+....+..            +...+  .+++++.+.+..++.+++.. ++..+.||+||+|||+.|..|.++. 
T Consensus       158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~  236 (558)
T PLN02546        158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI  236 (558)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence               00000000000            01111  25788888888888887776 5778999999999999977665321 


Q ss_pred             ------HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCc
Q 023957          121 ------ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  185 (275)
Q Consensus       121 ------~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~  185 (275)
                            +.+..+.   +      +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++...+.+.++++||+++.++
T Consensus       237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~--~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~  314 (558)
T PLN02546        237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFN--GLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE  314 (558)
T ss_pred             hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHH--hcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence                  1111111   1      8899999999998  568999999999988888888888999999999999999999


Q ss_pred             eeeeecCCC-CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          186 RVNLDSVSE-GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       186 ~v~~i~~~~-~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      .+.+++..+ +.+.+.+.+++...+|.|++++|.+|+..++.....+++++++|+|.||+++|| ++|+|||+|||+..+
T Consensus       315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~  393 (558)
T PLN02546        315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI  393 (558)
T ss_pred             EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence            999997543 334455555555558999999999999887543334457788899999999998 899999999999876


Q ss_pred             CCCCC
Q 023957          265 VSASM  269 (275)
Q Consensus       265 ~~~~~  269 (275)
                      ...+.
T Consensus       394 ~l~~~  398 (558)
T PLN02546        394 NLTPV  398 (558)
T ss_pred             ccHHH
Confidence            55443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=9.1e-32  Score=227.64  Aligned_cols=246  Identities=19%  Similarity=0.253  Sum_probs=180.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCcccccccccc-ccCCcccccccccccccc--cccEEEEe-eee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (275)
                      .++|+|||||+||++||..|+ .+  .+|+|+++++...+....++. ...............+++  .++++..+ .+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            468999999999999999997 34  489999999877654333321 111111111111111222  25677655 455


Q ss_pred             Eeec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHH
Q 023957           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGE  139 (275)
Q Consensus        86 ~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~  139 (275)
                      .++.  +.+.+.++..+.||+|++|||+.|..++..            .+....+..            +|.+|+|+|..
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~  162 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS  162 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            6654  477788888899999999999986543210            122211211            88899999999


Q ss_pred             HhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          140 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       140 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +.  ..+.+++++++.+.+++ ..++...+.+.+.+++.||+++.++.+++++. ++...+.+.+|++++||.||+++|.
T Consensus       163 l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        163 AT--QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HH--HcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence            98  56899999999888765 35666778888889999999999999999976 3445677888999999999999999


Q ss_pred             CCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          219 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .|+..++...++  ..  ++++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~  282 (396)
T PRK09754        240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLD  282 (396)
T ss_pred             ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence            999888766554  33  467999999998 89999999999987654

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.5e-32  Score=236.94  Aligned_cols=252  Identities=20%  Similarity=0.237  Sum_probs=182.2

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc------------------------cC---C
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------------VE---P   60 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~------------------------~~---~   60 (275)
                      |...+|||+||||||+|++||..|+ .|.+|+|||++. +|+.|.. .++                        +.   .
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n-~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~   79 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVN-IGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP   79 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceec-CCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence            3456799999999999999999998 699999999974 4432221 000                        00   0


Q ss_pred             ccccccccc-------------c---cccccccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchHH
Q 023957           61 SFGKRSVIN-------------H---TDYLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT  120 (275)
Q Consensus        61 ~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~~  120 (275)
                      ......+..             .   .....+++++.+++..++.+  .+.+.++  .++.||+||+|||+.|..|+++.
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G  159 (468)
T PRK14694         80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPG  159 (468)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCC
Confidence            000000000             0   00113678888888888766  5555555  47999999999999976554321


Q ss_pred             ---------HHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957          121 ---------ERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  182 (275)
Q Consensus       121 ---------~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  182 (275)
                               .....+   .+      +|.+|+|+|..+.  ..+.+++++.+. .+++..++++.+.+.+.+++.||+++
T Consensus       160 ~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~--~~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l~~~GI~v~  236 (468)
T PRK14694        160 LAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFA--RLGSRVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVL  236 (468)
T ss_pred             CCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEECC-CCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence                     111111   11      8899999999998  568999999864 56667778889999999999999999


Q ss_pred             cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          183 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       183 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      .++.+.+++.+++.+.+.+.++ ++++|.|++++|.+|+..++....++++. .+|++.||++++| +.|+|||+|||+.
T Consensus       237 ~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~  313 (468)
T PRK14694        237 KQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTD  313 (468)
T ss_pred             eCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCC
Confidence            9999999986655445555444 69999999999999998876544444454 4789999999999 8999999999998


Q ss_pred             CCCCCC
Q 023957          263 IRVSAS  268 (275)
Q Consensus       263 ~~~~~~  268 (275)
                      .+....
T Consensus       314 ~~~~~~  319 (468)
T PRK14694        314 QPQFVY  319 (468)
T ss_pred             CcccHH
Confidence            776543

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.8e-32  Score=242.02  Aligned_cols=252  Identities=21%  Similarity=0.248  Sum_probs=182.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c---------------------ccc--CCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R---------------------AMV--EPSFGK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~---------------------~~~--~~~~~~   64 (275)
                      ..|||+||||||+|++||..|+ .|.+|+|||++ .+|+.+...   +                     +..  .+....
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            3599999999999999999998 69999999998 555432110   0                     000  000000


Q ss_pred             ccccc-------------ccc---cccccEEEEeeeeEeecCeE--EecCC--eEEeCCEEEEccCCCCCCCchHHH---
Q 023957           65 RSVIN-------------HTD---YLVNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRTE---  121 (275)
Q Consensus        65 ~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~lilatG~~~~~~~~~~~---  121 (275)
                      ..+..             ...   -..+++++.+.+..++.+.+  ...++  ..+.||+||+|||+.|..|.++..   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~  255 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence            00000             000   11257788888887777643  33444  368999999999999776643210   


Q ss_pred             ----HHHHH-----hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957          122 ----RLNQY-----QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  186 (275)
Q Consensus       122 ----~l~~~-----~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  186 (275)
                          ..+.+     .+      +|.+|+|+|..+.  ..+.+|+++.+. .+++.+++++.+.+.+.+++.||++++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~  332 (561)
T PRK13748        256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFA--RLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ  332 (561)
T ss_pred             ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence                00111     11      8899999999998  568999999985 455567888899999999999999999999


Q ss_pred             eeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          187 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       187 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +++++.+++.+.+.+.++ ++++|.|++++|.+|+..++.....+++++++|++.||+++|| +.|+|||+|||+..+..
T Consensus       333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~  410 (561)
T PRK13748        333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQF  410 (561)
T ss_pred             EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccc
Confidence            999986655555555555 5999999999999999887544444557788899999999999 89999999999987765


Q ss_pred             CCC
Q 023957          267 ASM  269 (275)
Q Consensus       267 ~~~  269 (275)
                      ...
T Consensus       411 ~~~  413 (561)
T PRK13748        411 VYV  413 (561)
T ss_pred             hhH
Confidence            443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=5.5e-33  Score=239.22  Aligned_cols=253  Identities=24%  Similarity=0.240  Sum_probs=184.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--cccc-----c---------------ccc-----CCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASL-----R---------------AMV-----EPSFGK   64 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~-----~---------------~~~-----~~~~~~   64 (275)
                      ++||+|||||++|+.+|..|+ .|.+|+|+|++...|..  ++-.     .               +..     ......
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            368999999999999999998 69999999998643311  0100     0               000     000000


Q ss_pred             cccc------------cccccc--cccEEEEeeeeE----eecCe--EEecCCe--EEeCCEEEEccCCCCCCCchH---
Q 023957           65 RSVI------------NHTDYL--VNGRIVASPAIN----ITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR---  119 (275)
Q Consensus        65 ~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~--v~~~~~~--~~~~~~lilatG~~~~~~~~~---  119 (275)
                      ..+.            ...+.+  .+++++.+.+..    ++.++  +...++.  .+.||+||+|||+.|..|+..   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~  160 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD  160 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence            0000            000111  267888887777    44554  4444554  689999999999998654321   


Q ss_pred             ------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcC
Q 023957          120 ------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  184 (275)
Q Consensus       120 ------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  184 (275)
                            ...+...   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.++++||+++.+
T Consensus       161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~  238 (466)
T PRK07845        161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYT--ELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR  238 (466)
T ss_pred             CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence                  1112111   11      8899999999998  56899999999999888888888999999999999999999


Q ss_pred             ceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          185 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       185 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      +.+.+++.+++.+.+.+.+|+++++|.|++++|.+|+...+.....+++++++|++.||++++| +.|+|||+|||+..+
T Consensus       239 ~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~  317 (466)
T PRK07845        239 SRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVL  317 (466)
T ss_pred             CEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCc
Confidence            9999997655566677778889999999999999999876543344457788899999999999 899999999999876


Q ss_pred             CCCC
Q 023957          265 VSAS  268 (275)
Q Consensus       265 ~~~~  268 (275)
                      ....
T Consensus       318 ~l~~  321 (466)
T PRK07845        318 PLAS  321 (466)
T ss_pred             cchh
Confidence            5443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.8e-32  Score=234.48  Aligned_cols=253  Identities=19%  Similarity=0.207  Sum_probs=178.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--cccccc-----------ccC-----Ccccccccccc---
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASLRA-----------MVE-----PSFGKRSVINH---   70 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~~~-----------~~~-----~~~~~~~~~~~---   70 (275)
                      +|||+||||||+|++||..|+ .|.+|+|||++...|..  ++..+.           ...     ..........+   
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   83 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA   83 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence            589999999999999999998 69999999997443311  000000           000     00000000000   


Q ss_pred             --------------ccc---ccccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCCCC-chH-------HH
Q 023957           71 --------------TDY---LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP-KTR-------TE  121 (275)
Q Consensus        71 --------------~~~---~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~~~-~~~-------~~  121 (275)
                                    ..+   ..++..+.+.....+.+++..  .++  .++.||++|+|||+.|..| ..+       ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~~  163 (466)
T PRK07818         84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYE  163 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEchH
Confidence                          000   024566666666666665443  344  4689999999999997643 221       01


Q ss_pred             H-H--HHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 R-L--NQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~-l--~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      . +  ....+      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.++++||+++.++.|++++.
T Consensus       164 ~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  241 (466)
T PRK07818        164 EQILSRELPKSIVIAGAGAIGMEFAYVLK--NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDD  241 (466)
T ss_pred             HHhccccCCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            0 0  01111      8889999999998  5688999999999888888888899999999999999999999999986


Q ss_pred             CCCCceEEcC--CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          193 SEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       193 ~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      +++.+.+.+.  +|  +++++|.|++++|.+|+.+++.....++.++++|++.||++++| +.|+|||+|||+..+....
T Consensus       242 ~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~~  320 (466)
T PRK07818        242 NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLAH  320 (466)
T ss_pred             eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccHh
Confidence            5554445443  56  37999999999999999876443334446778899999999999 8999999999997654433

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-32  Score=238.08  Aligned_cols=252  Identities=21%  Similarity=0.253  Sum_probs=183.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc------------------c-----cc--CCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------A-----MV--EPSFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~------------------~-----~~--~~~~~~~   65 (275)
                      .++||+|||||++|+++|..|+ .|.+|+++|+.+.+|+.|....                  .     ..  .+.+...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   94 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG   94 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence            4699999999999999999998 6999999999877775442210                  0     00  0000000


Q ss_pred             ccc--------c-----ccccc---cccEEEEeeeeEeecCe--EEecCC--eEEeCCEEEEccCCCCCCCchHH-----
Q 023957           66 SVI--------N-----HTDYL---VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTRT-----  120 (275)
Q Consensus        66 ~~~--------~-----~~~~~---~~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~~lilatG~~~~~~~~~~-----  120 (275)
                      .+.        .     +...+   .+++++.+.+...+.+.  +...++  .++.||+||+|||+.|..|+++.     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~  174 (479)
T PRK14727         95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP  174 (479)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence            000        0     00111   25677777777777664  344455  36899999999999977665321     


Q ss_pred             -----HHHHH--Hhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957          121 -----ERLNQ--YQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       121 -----~~l~~--~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                           +.+..  ..+      +|.+|+|+|..+.  ..+.+++++.+. .+++.+++++.+.+.+.+++.|++++.+++|
T Consensus       175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYA--RLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             eecchHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence                 11110  011      8899999999998  568999999875 5666678888899999999999999999999


Q ss_pred             eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +.++.+++.+.+.+.++ ++++|.|++|+|..|+..++.....+++++++|++.||+++|| +.|+|||+|||+..|...
T Consensus       252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~  329 (479)
T PRK14727        252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV  329 (479)
T ss_pred             EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence            99976555555665555 5999999999999999887554444557788899999999999 899999999999877654


Q ss_pred             C
Q 023957          268 S  268 (275)
Q Consensus       268 ~  268 (275)
                      .
T Consensus       330 ~  330 (479)
T PRK14727        330 Y  330 (479)
T ss_pred             h
Confidence            3

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=2.5e-31  Score=223.74  Aligned_cols=244  Identities=23%  Similarity=0.337  Sum_probs=179.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCcccccccc--cccccc--cccEEEE-eeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI--NHTDYL--VNGRIVA-SPAI   85 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~~   85 (275)
                      ++|+|||||+||+++|..|+   +..+|+||++++...+....+..............  ...+++  .+++++. ..+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999997   36799999998865543333322222111111111  111222  2566653 4566


Q ss_pred             EeecC--eEEecCCeEEeCCEEEEccCCCCCCCchHH----------HHHHHH----hc--------CCcchhhHHHHHh
Q 023957           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------ERLNQY----QA--------GGPTGVELAGEIA  141 (275)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~~----------~~l~~~----~~--------~g~~~~~~a~~l~  141 (275)
                      .++..  .+.+ ++..+.||+||+|||+.|..|+++.          ......    ..        +|.+|+|+|..+.
T Consensus        83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~  161 (377)
T PRK04965         83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC  161 (377)
T ss_pred             EEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            66643  5555 5678999999999999976554321          111111    11        8889999999998


Q ss_pred             hhCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          142 VDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                        ..+.+++++++.+.+++. .++.+...+.+.+++.|++++.++++.+++.+++...+.+.+|++++||.||+|+|.+|
T Consensus       162 --~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        162 --RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             --hcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence              568999999998887653 46677888899999999999999999999876666667888999999999999999999


Q ss_pred             CchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          221 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +..+++..++  ..+ +| +.||++++| +.|+|||+|||+..+.
T Consensus       240 ~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~  279 (377)
T PRK04965        240 NTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEING  279 (377)
T ss_pred             chHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECC
Confidence            9888877665  333 34 999999998 8999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=7.4e-32  Score=234.22  Aligned_cols=248  Identities=21%  Similarity=0.276  Sum_probs=180.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc---ccccc--------------------ccc-CCcccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT---WASLR--------------------AMV-EPSFGKRS   66 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~---~~~~~--------------------~~~-~~~~~~~~   66 (275)
                      ..|||+|||||++|++||..++ .|.+|+|||++. +|+.   ++-++                    +.. ........
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~  125 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL  125 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence            5689999999999999999998 599999999975 4421   11000                    000 00000000


Q ss_pred             cccc------------cccc--cccEEEEeeeeEeecCeEE----------------------------ecCCeEEeCCE
Q 023957           67 VINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYDY  104 (275)
Q Consensus        67 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~~~~~~~~~  104 (275)
                      +..+            .+.+  .+++++.+.....+++++.                            ..++..+.||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~  205 (561)
T PTZ00058        126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN  205 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence            0000            0111  2577888887666666542                            23566899999


Q ss_pred             EEEccCCCCCCCchH-------HHHHHHHh--c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHH
Q 023957          105 LVIATGHKDPVPKTR-------TERLNQYQ--A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK  169 (275)
Q Consensus       105 lilatG~~~~~~~~~-------~~~l~~~~--~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  169 (275)
                      +|+|||+.|..|.++       .+.+..+.  +      +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.
T Consensus       206 lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~--~~G~~Vtli~~~~~il~~~d~~i~~~  283 (561)
T PTZ00058        206 ILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVN--RLGAESYIFARGNRLLRKFDETIINE  283 (561)
T ss_pred             EEEecCCCCCCCCCCCceeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHH--HcCCcEEEEEecccccccCCHHHHHH
Confidence            999999998766542       12222221  1      8899999999998  67999999999998888888889999


Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCC-CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCcc
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTST-GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLR  247 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~  247 (275)
                      +.+.+++.||+++.++.+.+++.+++ .+.+...+ ++++++|.|++++|.+|+.+.+...+.++. +++|+|.||+++|
T Consensus       284 l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lq  362 (561)
T PTZ00058        284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQR  362 (561)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCc
Confidence            99999999999999999999986543 34444444 457999999999999999888766554433 4579999999999


Q ss_pred             ccCCCCeEEeccccCCC
Q 023957          248 VKGQKNIFAIGDITDIR  264 (275)
Q Consensus       248 ~~~~~~v~a~Gd~~~~~  264 (275)
                      | +.|+|||+|||+..+
T Consensus       363 T-s~p~IYA~GDv~~~~  378 (561)
T PTZ00058        363 T-SVKHIYAVGDCCMVK  378 (561)
T ss_pred             c-CCCCEEEeEeccCcc
Confidence            8 999999999999844

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.1e-31  Score=231.62  Aligned_cols=251  Identities=25%  Similarity=0.361  Sum_probs=181.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---------------------ccc-cC---Ccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------------RAM-VE---PSFGKRS   66 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---------------------~~~-~~---~~~~~~~   66 (275)
                      +|||+||||||+|++||..|+ .|.+|+|||+ ..+|+.+...                     ... +.   .......
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   81 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK   81 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence            489999999999999999998 6999999999 4455433210                     000 00   0000000


Q ss_pred             cccc-------------c--ccccccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCC-CCCCchH---------HH
Q 023957           67 VINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---------TE  121 (275)
Q Consensus        67 ~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~-~~~~~~~---------~~  121 (275)
                      +...             .  ....+++++.+.+..++.+.+.+ ++..+.||++|+|||+. |.+|+..         .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~  160 (460)
T PRK06292         82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD  160 (460)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence            0000             0  01124666777666667776666 66789999999999999 8777642         11


Q ss_pred             HHH---HHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLN---QYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~---~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      ...   ...+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++. +++++++.+.+++.
T Consensus       161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~  237 (460)
T PRK06292        161 DAFELDKLPKSLAVIGGGVIGLELGQALS--RLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK  237 (460)
T ss_pred             HHhCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence            111   1111      8899999999998  5689999999999888888888999999999999 99999999999976


Q ss_pred             CCC-CceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957          193 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       193 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      +++ .+.+...++  +++++|.|++++|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+.....
T Consensus       238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~~  316 (460)
T PRK06292        238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLHE  316 (460)
T ss_pred             cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchhH
Confidence            543 233333333  57999999999999999886543344457778899999999999 89999999999987655433

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.1e-32  Score=234.57  Aligned_cols=253  Identities=18%  Similarity=0.214  Sum_probs=176.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----c---cc---C----Cc--cccccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----A---MV---E----PS--FGKRSVINHT   71 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----~---~~---~----~~--~~~~~~~~~~   71 (275)
                      +|||+||||||||++||..++ .|.+|+|||++..+|+.....   +     .   ..   .    ..  ........+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            489999999999999999998 699999999866566432100   0     0   00   0    00  0000000000


Q ss_pred             ------------------ccc--cccEEEEeeeeEeecCeEE--ecCC--eEEeCCEEEEccCCCCC-CCchH-------
Q 023957           72 ------------------DYL--VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR-------  119 (275)
Q Consensus        72 ------------------~~~--~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~~~lilatG~~~~-~~~~~-------  119 (275)
                                        ..+  .+++++.+.....+.+++.  ..++  ..+.||++|+|||+.|. +|+.+       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~  162 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence                              001  1466777665444444443  3445  36899999999999874 33321       


Q ss_pred             -HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          120 -TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       120 -~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                       ......+   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.++.|++
T Consensus       163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~--~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~  240 (466)
T PRK06115        163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWR--RLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG  240 (466)
T ss_pred             CHHHHhCCccCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence             1111111   11      8899999999988  5689999999999988888888889999999999999999999999


Q ss_pred             ecCCCCCceEEcC---C--CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          190 DSVSEGSDTYLTS---T--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       190 i~~~~~~~~v~~~---~--g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      ++.+++.+.+.+.   +  ++++++|.|++++|.+|+...+.....+++++.+| +.||++++| +.|+|||+|||+..|
T Consensus       241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~  318 (466)
T PRK06115        241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP  318 (466)
T ss_pred             EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence            9865555544332   2  35799999999999999987654444444566666 678999998 999999999999876


Q ss_pred             CCCCC
Q 023957          265 VSASM  269 (275)
Q Consensus       265 ~~~~~  269 (275)
                      ..+..
T Consensus       319 ~la~~  323 (466)
T PRK06115        319 MLAHK  323 (466)
T ss_pred             ccHHH
Confidence            55443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=6.9e-32  Score=233.12  Aligned_cols=250  Identities=22%  Similarity=0.287  Sum_probs=180.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc------------------cCCcc-------cccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------VEPSF-------GKRS   66 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~------------------~~~~~-------~~~~   66 (275)
                      .|||+|||||++|++||+.|+ .|.+|+|||+ +.+|+.+......                  .....       ....
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            389999999999999999998 6999999999 5555432211000                  00000       0000


Q ss_pred             ccccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC-eEEeCCEEEEccCCCCCCCchH----------
Q 023957           67 VINHT------------DY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR----------  119 (275)
Q Consensus        67 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~lilatG~~~~~~~~~----------  119 (275)
                      .....            ..  ..+++++.+.+..++.+.+..  .++ ..+.||++|+|||+.|..|+.+          
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~  159 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT  159 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence            00000            00  124677777777776664443  333 4799999999999998765432          


Q ss_pred             HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957          120 TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       120 ~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                      .+....+   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|.++
T Consensus       160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       160 STGALNLKEVPESLVIIGGGVIGIEFASIFA--SLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             chHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            0111111   11      8889999999998  55889999999998888888888999999999999999999999999


Q ss_pred             cCCCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          191 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       191 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +.+++.+.+.+.+|  +++++|.+|+|+|..|+...+.....++.++.+|++.||++++| +.|+||++|||+..+..
T Consensus       238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~  314 (461)
T TIGR01350       238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML  314 (461)
T ss_pred             EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence            87666666666666  47999999999999998873222333446778899999999998 89999999999976543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=3.7e-31  Score=227.67  Aligned_cols=246  Identities=21%  Similarity=0.301  Sum_probs=176.6

Q ss_pred             CeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCccc--ccccccccccc--cccEEE-Eeeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIV-ASPAI   85 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~   85 (275)
                      ++|+|||||++|+++|..|++   +.+|+|||+++.+++....++........  ........+.+  .++++. ...+.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            379999999999999999973   56999999999876543333322221111  01111111111  256664 44666


Q ss_pred             Eeec--CeEEecC---CeEEe--CCEEEEccCCCCCCCchH------------H---HHHHHH----h-c------CCcc
Q 023957           86 NITE--NEVLTAE---GRRVV--YDYLVIATGHKDPVPKTR------------T---ERLNQY----Q-A------GGPT  132 (275)
Q Consensus        86 ~~~~--~~v~~~~---~~~~~--~~~lilatG~~~~~~~~~------------~---~~l~~~----~-~------~g~~  132 (275)
                      .++.  +.+.+.+   +..+.  ||+||+|||+.|..|..+            .   ..+...    . +      +|.+
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~  160 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI  160 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence            6653  3555533   45555  999999999996544321            1   112111    1 1      8889


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecE
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  211 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  211 (275)
                      |+|+|..+.  ..+.+++++.+.+.+++ .+++++.+.+.+.+++.|++++.++.|.+++.+++...+.+. +.+++||.
T Consensus       161 g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~  237 (444)
T PRK09564        161 GLEAVEAAK--HLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV  237 (444)
T ss_pred             HHHHHHHHH--hcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence            999999988  56889999999887765 577888999999999999999999999999754433334444 44799999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +++|+|..|+.++++..++  +++++|++.||++++| ++|+|||+|||+..+.
T Consensus       238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  288 (444)
T PRK09564        238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN  288 (444)
T ss_pred             EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence            9999999999888887765  5667899999999998 8999999999998654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.9e-31  Score=230.34  Aligned_cols=252  Identities=19%  Similarity=0.237  Sum_probs=181.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcC------CCCcccccccc---cc------------cc----CCccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP------KEYFEITWASL---RA------------MV----EPSFG--   63 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~------~~~~~~~~~~~---~~------------~~----~~~~~--   63 (275)
                      ..||++||||||+|++||.+++ .|.+|+|||+      ...+|+.+...   +.            ..    .....  
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            4689999999999999999998 6999999998      23344322110   00            00    00000  


Q ss_pred             c-----cccccc------------ccc--ccccEEEEeeeeEee----cCeEEec--CCeEEeCCEEEEccCCCCCC-Cc
Q 023957           64 K-----RSVINH------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK  117 (275)
Q Consensus        64 ~-----~~~~~~------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~~~~~~~~~lilatG~~~~~-~~  117 (275)
                      .     ..+...            ...  ..+++++.+.+..++    ..++.+.  ++..+.||++|+|||+.|.. |.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~  162 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG  162 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence            0     000000            000  125777888877776    4456553  34589999999999999753 32


Q ss_pred             hH--------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957          118 TR--------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  180 (275)
Q Consensus       118 ~~--------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  180 (275)
                      .+        .+.+..+   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWR--RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD  240 (475)
T ss_pred             CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence            21        1111111   11      8889999999988  5689999999999888877888888999999999999


Q ss_pred             EEcCceeeeecCCCCCceEEcCC--C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEE
Q 023957          181 VKLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA  256 (275)
Q Consensus       181 i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a  256 (275)
                      ++.++.|++++.+++.+.+.+.+  |  +++++|.|++++|.+|+.+++.....++.++++|++.||++++| +.|+|||
T Consensus       241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA  319 (475)
T PRK06327        241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA  319 (475)
T ss_pred             EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence            99999999998766555565544  3  47999999999999999876544444557788899999999998 8999999


Q ss_pred             eccccCCCCC
Q 023957          257 IGDITDIRVS  266 (275)
Q Consensus       257 ~Gd~~~~~~~  266 (275)
                      +|||+..|..
T Consensus       320 ~GD~~~~~~~  329 (475)
T PRK06327        320 IGDVVRGPML  329 (475)
T ss_pred             EEeccCCcch
Confidence            9999976543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=4.7e-31  Score=221.46  Aligned_cols=242  Identities=28%  Similarity=0.404  Sum_probs=178.3

Q ss_pred             eEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcc-cccccccccccc--cccEEEEeeeeEe
Q 023957           15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      +|+|||||+||+.+|..|+    ++.+|+|||+++.+.+... ++....... ..+...+..+++  .+++++.+.+..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            5899999999999999984    3789999999987654432 222211111 111122222222  2678888888888


Q ss_pred             ec--CeEEecCCeEEeCCEEEEccCCCCCCCchHH--------------HH----H-HHHh---c--------CCcchhh
Q 023957           88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------------ER----L-NQYQ---A--------GGPTGVE  135 (275)
Q Consensus        88 ~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~~--------------~~----l-~~~~---~--------~g~~~~~  135 (275)
                      +.  +++.+.+++++.||+||+|||+.+..|.++.              ..    + +.+.   .        +|..++|
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E  159 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE  159 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence            74  4788888888999999999999865543210              01    1 1121   1        7888999


Q ss_pred             HHHHHhhhCC----CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecE
Q 023957          136 LAGEIAVDFP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  211 (275)
Q Consensus       136 ~a~~l~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  211 (275)
                      .|..+...++    ..+++++ ..+.+++.+++.+.+.+.+.+++.||+++.++.+++++.+    .+.+.+|+++++|.
T Consensus       160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~  234 (364)
T TIGR03169       160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA  234 (364)
T ss_pred             HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence            9998875321    2588888 5566666677778888999999999999999999998632    57778888999999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|+|+|.+|+. ++...++  .++++|++.||+++|++++|+|||+|||+..+.
T Consensus       235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~  285 (364)
T TIGR03169       235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD  285 (364)
T ss_pred             EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence            99999999964 5555544  567789999999999878999999999997654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.98  E-value=5e-31  Score=238.68  Aligned_cols=244  Identities=19%  Similarity=0.287  Sum_probs=186.8

Q ss_pred             EEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCccc-ccccccccccc--cccEEEEe-eeeEe
Q 023957           16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      |+|||||+||+++|..|+    .+++|+|||+++..++....+......... .+......+++  .+++++.+ .+..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999998875    367999999999887665444443322111 11222222332  25777654 56666


Q ss_pred             ec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHHHh
Q 023957           88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGEIA  141 (275)
Q Consensus        88 ~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~l~  141 (275)
                      +.  +.+.+.++..+.||+||+|||+.|..|+++            .+.+..+..            +|.+|+|+|..+.
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~  160 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ  160 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            64  478888888999999999999997655432            112222211            8889999999998


Q ss_pred             hhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          142 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                        ..+.+++++++.+.+++ .+++.....+.+.+++.||++++++.++++..++....+.+.+|+++++|.||+++|.+|
T Consensus       161 --~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       161 --NLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             --hcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence              56889999999888765 567778888899999999999999999999766555568889999999999999999999


Q ss_pred             CchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          221 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +..++...++  +.  +|.+.||++++| +.|+|||+|||+..+..
T Consensus       239 n~~la~~~gl--~~--~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~  279 (785)
T TIGR02374       239 NDELAVSAGI--KV--NRGIIVNDSMQT-SDPDIYAVGECAEHNGR  279 (785)
T ss_pred             CcHHHHhcCC--cc--CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence            9988877665  33  377999999999 89999999999987664

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.98  E-value=7.4e-31  Score=227.21  Aligned_cols=246  Identities=20%  Similarity=0.210  Sum_probs=176.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Ccccc---cccccc------------------ccCC-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEIT---WASLRA------------------MVEP-   60 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~---~~~~~~------------------~~~~-   60 (275)
                      .+|||+||||||+|++||..|+ .|.+|+|||+..        .+|+.   ++-.+.                  .... 
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~   83 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK   83 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence            3589999999999999999998 699999999732        24432   100000                  0000 


Q ss_pred             ---ccccccccccc---------cc-----ccccEEEEeeeeEeecCeEEecC---CeEEeCCEEEEccCCCCCCCc-hH
Q 023957           61 ---SFGKRSVINHT---------DY-----LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TR  119 (275)
Q Consensus        61 ---~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~lilatG~~~~~~~-~~  119 (275)
                         ......+....         .+     ..++.++.+.+...+.+++...+   +..+.||++|+|||+.|..|. ++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~  163 (499)
T PTZ00052         84 TSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVP  163 (499)
T ss_pred             CCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCC
Confidence               00000000000         00     12566677777766666665432   357999999999999977553 22


Q ss_pred             --------HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957          120 --------TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  182 (275)
Q Consensus       120 --------~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  182 (275)
                              .+.+....   +      +|.+|+|+|..+.  ..+.+|+++.+. .+++.+++++.+.+.+.+++.||+++
T Consensus       164 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~  240 (499)
T PTZ00052        164 GAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLN--ELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFL  240 (499)
T ss_pred             CccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEE
Confidence                    12222211   1      8899999999998  568999999874 55677888889999999999999999


Q ss_pred             cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          183 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       183 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      .++.+.+++..++...+.+.+|+++++|.|++++|.+|+.+++.....+++++++|++.++.. +| +.|+|||+|||+.
T Consensus       241 ~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~  318 (499)
T PTZ00052        241 EGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE  318 (499)
T ss_pred             cCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence            999999887655555677778888999999999999999988765555557788898777777 87 8999999999985

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.98  E-value=4.5e-31  Score=228.17  Aligned_cols=250  Identities=20%  Similarity=0.246  Sum_probs=177.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc-----------------c--cC---Ccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA-----------------M--VE---PSFGK   64 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~-----------------~--~~---~~~~~   64 (275)
                      ...|||+||||||+|++||..|+ .|++|+|||+. .+|+.+...   +.                 .  +.   .....
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   80 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF   80 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            44699999999999999999998 69999999997 444332110   00                 0  00   00000


Q ss_pred             ccccc------------cccc--ccccEEEEeeeeEeecC-------e--EEecCC--eEEeCCEEEEccCCCCCC-Cch
Q 023957           65 RSVIN------------HTDY--LVNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKT  118 (275)
Q Consensus        65 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~-------~--v~~~~~--~~~~~~~lilatG~~~~~-~~~  118 (275)
                      .....            ..+.  ..+++++.+.+..++.+       +  +.+.++  ..+.||++|+|||+.|.. |..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~  160 (472)
T PRK05976         81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGL  160 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCC
Confidence            00000            0011  12678888888877765       3  444455  578999999999999753 322


Q ss_pred             H--------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEE
Q 023957          119 R--------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  181 (275)
Q Consensus       119 ~--------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  181 (275)
                      +        ......+   .+      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~--~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i  238 (472)
T PRK05976        161 PFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLA--DFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV  238 (472)
T ss_pred             CCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEE
Confidence            1        1111111   11      8899999999998  56899999999998888888888889999999999999


Q ss_pred             EcCceeeeecC--CCCCceEEcCCCc--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEe
Q 023957          182 KLGERVNLDSV--SEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI  257 (275)
Q Consensus       182 ~~~~~v~~i~~--~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~  257 (275)
                      +.++.|++++.  +++...+.+.+|+  ++++|.||+|+|.+|+.+.+.....++.. .+|++.||++++| +.|+|||+
T Consensus       239 ~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAi  316 (472)
T PRK05976        239 VTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAI  316 (472)
T ss_pred             EeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEe
Confidence            99999999974  3332233445663  69999999999999988765433333333 4689999999998 89999999


Q ss_pred             ccccCCCC
Q 023957          258 GDITDIRV  265 (275)
Q Consensus       258 Gd~~~~~~  265 (275)
                      |||+..+.
T Consensus       317 GD~~~~~~  324 (472)
T PRK05976        317 GDVIGEPQ  324 (472)
T ss_pred             eecCCCcc
Confidence            99987554

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.98  E-value=5.2e-31  Score=227.17  Aligned_cols=246  Identities=19%  Similarity=0.173  Sum_probs=179.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Cccccccc---cc-----------cc------cCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS---LR-----------AM------VEPSFG   63 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~~~~---~~-----------~~------~~~~~~   63 (275)
                      .|||+|||||++|+.+|+.++ .|.+|++||+..        .+|+.+.+   ++           ..      ......
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            489999999999999999998 699999999731        23432110   00           00      000000


Q ss_pred             c------ccccc------------ccccc--cccEEEEeeeeEeecCeEEec--CC--eEEeCCEEEEccCCCCCCCchH
Q 023957           64 K------RSVIN------------HTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR  119 (275)
Q Consensus        64 ~------~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~lilatG~~~~~~~~~  119 (275)
                      .      ..+..            ....+  .+++++.+....++++++...  ++  ..+.||++|+|||+.|..|+++
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            0      00000            00011  267888998888888866543  33  4789999999999998766543


Q ss_pred             H--------HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957          120 T--------ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  182 (275)
Q Consensus       120 ~--------~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  182 (275)
                      .        +.+..+.   +      +|.+|+|+|..+.  ..+.+++++.+ +.+++.+++++.+.+.+.+++.||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHH--HhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            1        1121111   1      8999999999998  56899999987 466788889999999999999999999


Q ss_pred             cCceeeeecCCCCCceEEcCCC---cEEeecEEEEcCCCCCCchhhcccccccccCC-CCceEeCCCccccCCCCeEEec
Q 023957          183 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG  258 (275)
Q Consensus       183 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~~~~v~a~G  258 (275)
                      +++.+.+++..++...+.+.++   +++++|.|++++|.+|+..++.....++.++. +|+|.||++++| +.|+|||+|
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G  317 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG  317 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence            9999988876555555666555   37999999999999999987654555556665 489999999998 899999999


Q ss_pred             cccC
Q 023957          259 DITD  262 (275)
Q Consensus       259 d~~~  262 (275)
                      ||+.
T Consensus       318 Dv~~  321 (484)
T TIGR01438       318 DILE  321 (484)
T ss_pred             EecC
Confidence            9996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.97  E-value=1.1e-30  Score=213.91  Aligned_cols=236  Identities=22%  Similarity=0.288  Sum_probs=163.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc------ccccCCcccccccccccccc--cccEEEEeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------RAMVEPSFGKRSVINHTDYL--VNGRIVASPA   84 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   84 (275)
                      |||+|||||++|++||..|+ .|++|+|||++.. ++.+...      +................++.  .+++++...+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v   79 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV   79 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            69999999999999999997 6999999998873 3222111      11100000001111111111  1456655666


Q ss_pred             eEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------H--HHhc-------CCcchhhHHHH
Q 023957           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------N--QYQA-------GGPTGVELAGE  139 (275)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~--~~~~-------~g~~~~~~a~~  139 (275)
                      ..++..    .+.+.++..+.||++|+|||..|..|.++....            .  .+..       +|.++++.+..
T Consensus        80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~  159 (300)
T TIGR01292        80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY  159 (300)
T ss_pred             EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence            666543    456666778999999999999876544321110            0  0011       78889999999


Q ss_pred             HhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcC-----CCcEEeecEEE
Q 023957          140 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS-----TGDTINADCHF  213 (275)
Q Consensus       140 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~d~vv  213 (275)
                      +.  ..+.+++++.+.+.+.      ....+.+.+++. |++++.++.+++++.+++...+.+.     +++++++|.+|
T Consensus       160 l~--~~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       160 LT--RIAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             HH--hhcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence            98  4588999999877542      234556667777 9999999999999865533334332     23579999999


Q ss_pred             EcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          214 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       214 ~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      +|+|++|+.+++... +  .++++|++.||+++++ ++|+||++|||+.
T Consensus       232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~  276 (300)
T TIGR01292       232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRD  276 (300)
T ss_pred             EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccC
Confidence            999999998888765 3  5677899999999998 8999999999998

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=4.2e-30  Score=221.22  Aligned_cols=248  Identities=21%  Similarity=0.228  Sum_probs=176.0

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc-------cccc-------------c--ccc----CCccccccc
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT-------WASL-------------R--AMV----EPSFGKRSV   67 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~-------~~~~-------------~--~~~----~~~~~~~~~   67 (275)
                      +|+||||||+|++||..|+ .|.+|+|||++...|..       ...+             .  +..    ........+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            8999999999999999998 69999999998654311       0000             0  000    000000001


Q ss_pred             cccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC-eEEeCCEEEEccCCCCCCCchH---------HH
Q 023957           68 INHT------------DY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR---------TE  121 (275)
Q Consensus        68 ~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~lilatG~~~~~~~~~---------~~  121 (275)
                      ..+.            ..  ..+++++.+++..++.+++..  +++ ..+.||++|+|||+.|..|+..         ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~  161 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK  161 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence            0000            00  126788888888787775443  344 4789999999999997644321         11


Q ss_pred             HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      ....+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.|++++++++|++++.
T Consensus       162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~  239 (458)
T PRK06912        162 HAMSLPSIPSSLLIVGGGVIGCEFASIYS--RLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNS  239 (458)
T ss_pred             HHhCccccCCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            111111   1      8899999999988  5688999999999888888888999999999999999999999999976


Q ss_pred             CCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          193 SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       193 ~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ++..+.+.. +|  .++++|.|++|+|.+|+.+.+.....++.++++| +.||+++|| +.|+|||+|||+..+...
T Consensus       240 ~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la  313 (458)
T PRK06912        240 YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLA  313 (458)
T ss_pred             cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccH
Confidence            544333432 34  3699999999999999987654333344566555 999999998 899999999999765544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.97  E-value=2.7e-30  Score=227.28  Aligned_cols=189  Identities=23%  Similarity=0.305  Sum_probs=144.2

Q ss_pred             cEEEEeeeeEeecCeEEe-cCCeEEeCCEEEEccCCCCCCCchH---------HHH---HHHHhc------CCcchhhHH
Q 023957           77 GRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTR---------TER---LNQYQA------GGPTGVELA  137 (275)
Q Consensus        77 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~lilatG~~~~~~~~~---------~~~---l~~~~~------~g~~~~~~a  137 (275)
                      ++++.+.....+.+++.. .++.++.||++|+|||+.|..|+..         .+.   ++.+.+      +|.+|+|+|
T Consensus       249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A  328 (659)
T PTZ00153        249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM  328 (659)
T ss_pred             eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence            577777777777776655 3567899999999999998876521         111   222222      889999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHH-HhCCCEEEcCceeeeecCCCCC--ceEEcCC-------C---
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTST-------G---  204 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g---  204 (275)
                      ..+.  ..+.+|+++++.+.+++.+++++.+.+.+.+ ++.||+++.++.|++++..++.  +.+.+.+       +   
T Consensus       329 ~~l~--~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~  406 (659)
T PTZ00153        329 DIYT--ALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK  406 (659)
T ss_pred             HHHH--hCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence            9988  5689999999999998888888888888865 6789999999999999865433  3443321       1   


Q ss_pred             -----cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC------CCCeEEeccccCCCCCCCC
Q 023957          205 -----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG------QKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       205 -----~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~------~~~v~a~Gd~~~~~~~~~~  269 (275)
                           +++++|.|++|+|.+|+.+.+.....++.++ +|+|.||+++|| +      +|+|||+|||++.+...+.
T Consensus       407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqT-s~~~~~~v~~IYAiGDv~g~~~La~~  480 (659)
T PTZ00153        407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRV-LREDQEVYDNIFCIGDANGKQMLAHT  480 (659)
T ss_pred             ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCc-CCCCCCCCCCEEEEEecCCCccCHHH
Confidence                 2699999999999999988765444444555 589999999998 4      6999999999976654443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.8e-29  Score=203.03  Aligned_cols=239  Identities=24%  Similarity=0.275  Sum_probs=170.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCccccccc-----cccccCCccccccccccccc--ccccEEEEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWAS-----LRAMVEPSFGKRSVINHTDY--LVNGRIVAS   82 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   82 (275)
                      +++||+|||||||||+||.+++ .+.+ ++|+|+....|++...     +++...............++  ..++++...
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~   81 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED   81 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence            4689999999999999999998 5888 7777765444322111     11111111111111111111  135566666


Q ss_pred             eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc----------------------CCcchhhH
Q 023957           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----------------------GGPTGVEL  136 (275)
Q Consensus        83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~----------------------~g~~~~~~  136 (275)
                      .+..++..    .+.++++. +.+++||+|||..+..|..+.+.  .+..                      +|.++++.
T Consensus        82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~--e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~  158 (305)
T COG0492          82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEE--EFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEE  158 (305)
T ss_pred             EEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcch--hhcCCceEEeeecCccccCCeEEEEcCCHHHHHH
Confidence            56555432    67777776 99999999999987666543111  2211                      89999999


Q ss_pred             HHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCC--C--cEEeecE
Q 023957          137 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST--G--DTINADC  211 (275)
Q Consensus       137 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~  211 (275)
                      |..|.  ..++++++++|++.+.      ..+.+.+.++++ ++++++++.++++..++ ...+.+.+  |  +.+.+|-
T Consensus       159 Al~L~--~~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~g  229 (305)
T COG0492         159 ALYLS--KIAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDG  229 (305)
T ss_pred             HHHHH--HhcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEece
Confidence            99999  5688899999998762      355666667766 89999999999998776 33455544  3  3789999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      ++++.|..|+..++...+.   ++++|++.+|+.++| |+|+|||+|||+..+..
T Consensus       230 vf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~r  280 (305)
T COG0492         230 VFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNGR  280 (305)
T ss_pred             EEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCccc
Confidence            9999999999888876653   688999999999999 99999999999988753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.97  E-value=6.2e-29  Score=196.97  Aligned_cols=257  Identities=19%  Similarity=0.261  Sum_probs=197.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc--------------ccCC-------------ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------MVEP-------------SFG   63 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~--------------~~~~-------------~~~   63 (275)
                      ..|||+|||+||.|..||...+ .|++.+.+|++..+|+..-....              ....             .+.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            4599999999999999998887 69999999999887743211000              0000             000


Q ss_pred             ccccccc------------cccc--cccEEEEeeeeEeecCeEEec--CC--eEEeCCEEEEccCCC-CCCCchHHH---
Q 023957           64 KRSVINH------------TDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHK-DPVPKTRTE---  121 (275)
Q Consensus        64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~lilatG~~-~~~~~~~~~---  121 (275)
                      .......            ...+  .++.+..+.....+++++...  ++  ..+.++++++|||+. +.+|++..+   
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk  197 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence            0000000            0011  145667777777788866553  33  478899999999995 777775422   


Q ss_pred             --------HHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957          122 --------RLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       122 --------~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                              .|...++      +|.+|+|+..-..  +.|++|++++..+.+.+.++.++...+++.|++.|+++.++++|
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence                    2444444      8999999999988  78999999999999998899999999999999999999999999


Q ss_pred             eeecCCCC-CceEEcC---CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957          188 NLDSVSEG-SDTYLTS---TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       188 ~~i~~~~~-~~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      ...+.+.+ .+.+...   ++  ++++||.+.+++|.+|...-+..+.++++.|.+|++.||..++| ++|+||++||+.
T Consensus       276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~  354 (506)
T KOG1335|consen  276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT  354 (506)
T ss_pred             EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence            99998776 4445443   22  48999999999999998888888878888899999999999999 899999999999


Q ss_pred             CCCCCCCCCC
Q 023957          262 DIRVSASMIF  271 (275)
Q Consensus       262 ~~~~~~~~~~  271 (275)
                      .-|+.+..+=
T Consensus       355 ~gpMLAhkAe  364 (506)
T KOG1335|consen  355 LGPMLAHKAE  364 (506)
T ss_pred             Ccchhhhhhh
Confidence            9999887653

>PRK10262 thioredoxin reductase; Provisional

Probab=99.96  E-value=8.8e-29  Score=204.13  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=160.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cC--Ccccccc----cccccccccccEEE
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS----VINHTDYLVNGRIV   80 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~--~~~~~~~----~~~~~~~~~~~~~~   80 (275)
                      ...+||+|||||||||+||..|+ +|+++++||+... |.........   ..  .......    .......+ ..++.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEII   81 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC-CCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEE
Confidence            34689999999999999999997 6999999996543 3221111100   00  0000000    00111111 22343


Q ss_pred             EeeeeEee--cCe--EEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------HHH--hc-------CCcchhh
Q 023957           81 ASPAINIT--ENE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------NQY--QA-------GGPTGVE  135 (275)
Q Consensus        81 ~~~~~~~~--~~~--v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~~~--~~-------~g~~~~~  135 (275)
                      ...+..++  ...  +..+ ...+.||+||+|||+.|..|+++....            ...  ..       +|.++++
T Consensus        82 ~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e  160 (321)
T PRK10262         82 FDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE  160 (321)
T ss_pred             eeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence            43333333  222  3332 336899999999999977655432110            000  00       7889999


Q ss_pred             HHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC------CcEEe
Q 023957          136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST------GDTIN  208 (275)
Q Consensus       136 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~~~  208 (275)
                      +|..+.  ..+.+++++.+.+.+.  ..+.+.+.+.+.+++.||++++++.++++..++... .+++.+      .++++
T Consensus       161 ~A~~l~--~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~  236 (321)
T PRK10262        161 EALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD  236 (321)
T ss_pred             HHHHHH--hhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence            999998  5588999999887642  234567778888889999999999999998654322 344432      23799


Q ss_pred             ecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-----CccccCCCCeEEeccccCCCC
Q 023957          209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-----~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|.||+++|.+|+..++.. ++  .+ ++|++.||+     +++| ++|+|||+|||++.+.
T Consensus       237 ~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~~  293 (321)
T PRK10262        237 VAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHIY  293 (321)
T ss_pred             CCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCCc
Confidence            9999999999999887653 34  33 368999997     5777 8999999999996543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.96  E-value=1.5e-28  Score=213.89  Aligned_cols=241  Identities=22%  Similarity=0.275  Sum_probs=164.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc---ccCCc--ccccccccccccc--cccEEEE-
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MVEPS--FGKRSVINHTDYL--VNGRIVA-   81 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~--~~~~~~~-   81 (275)
                      ...+||+||||||||++||.+|+ .|++|+|+++.  +|+.+.....   .....  ..........+..  .++++.. 
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~  287 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN  287 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence            34699999999999999999998 69999999753  4433221110   00000  0000000111111  1445543 


Q ss_pred             eeeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHH-H-----------HH-H-h--c-----CCcchhhH
Q 023957           82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-L-----------NQ-Y-Q--A-----GGPTGVEL  136 (275)
Q Consensus        82 ~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~-l-----------~~-~-~--~-----~g~~~~~~  136 (275)
                      .++..++..    .+.+.++..+.||++++|||+.|..|.++... .           .. + .  +     +|.+|+|+
T Consensus       288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~  367 (515)
T TIGR03140       288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA  367 (515)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence            344444322    55666777899999999999986654432110 0           00 0 0  1     88899999


Q ss_pred             HHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcCC---C--cEEee
Q 023957          137 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINA  209 (275)
Q Consensus       137 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~  209 (275)
                      |..+.  ..+.+++++++.+.+.      ....+.+.+++ .||+++.++.+++++.+++.. .+.+.+   |  +.+++
T Consensus       368 A~~L~--~~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~  439 (515)
T TIGR03140       368 AIDLA--GIVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL  439 (515)
T ss_pred             HHHHH--hcCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence            99998  5688999998876652      23445666765 599999999999998664433 254432   2  46999


Q ss_pred             cEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          210 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       210 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      |.|++++|..|+..++...   ++++.+|++.||++++| +.|+|||+|||+..+.
T Consensus       440 D~vi~a~G~~Pn~~~l~~~---~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~  491 (515)
T TIGR03140       440 DGVFVQIGLVPNTEWLKDA---VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY  491 (515)
T ss_pred             CEEEEEeCCcCCchHHhhh---cccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence            9999999999999988654   36777899999999999 8999999999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.96  E-value=2.7e-28  Score=199.42  Aligned_cols=248  Identities=23%  Similarity=0.384  Sum_probs=189.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEE-Eeeee-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPAI-   85 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-   85 (275)
                      ...++|||+|++|..|+..++ .+  .+++++-++.++.+....++....... ........+|++  +++++ ...++ 
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeEE
Confidence            578999999999999999998 33  478888777777666544443322211 111222223333  34443 33334 


Q ss_pred             -EeecCeEEecCCeEEeCCEEEEccCCC---CCCCchHHHH---------HHHHhc------------CCcchhhHHHHH
Q 023957           86 -NITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTER---------LNQYQA------------GGPTGVELAGEI  140 (275)
Q Consensus        86 -~~~~~~v~~~~~~~~~~~~lilatG~~---~~~~~~~~~~---------l~~~~~------------~g~~~~~~a~~l  140 (275)
                       ++..+++.+.+|+.+.|++++||||+.   +.+|+...+.         ...+..            +|..++|.+..+
T Consensus       153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l  232 (478)
T KOG1336|consen  153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL  232 (478)
T ss_pred             eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence             445669999999999999999999995   4444432111         111110            888999999999


Q ss_pred             hhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCC
Q 023957          141 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG  217 (275)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G  217 (275)
                      .  ..+.+++++++.+..++ .+.+.+.+.+.++++++|+++++++.+.+++...+  ...+.+.||++++||.||+.+|
T Consensus       233 ~--~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG  310 (478)
T KOG1336|consen  233 V--SKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG  310 (478)
T ss_pred             H--hcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec
Confidence            8  55899999999998886 67888999999999999999999999999988763  4458899999999999999999


Q ss_pred             CCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          218 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      .+|+..+++. +.  .+++.|+|.||.++|| +.|+|||+|||++.|...
T Consensus       311 ~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~  356 (478)
T KOG1336|consen  311 IKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG  356 (478)
T ss_pred             cccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence            9999999886 32  5678999999999999 899999999999988754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.96  E-value=1.3e-27  Score=208.35  Aligned_cols=240  Identities=23%  Similarity=0.272  Sum_probs=163.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccc----cccccccccccc--cccEEEE-e
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSF----GKRSVINHTDYL--VNGRIVA-S   82 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~--~~~~~~~-~   82 (275)
                      ..+||+||||||||++||.+|+ .|++|+|+++.  +|+.+........ ..+    .........+..  .++++.. .
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~  287 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ  287 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence            4689999999999999999998 69999999864  4443321110000 000    000000111111  1344432 3


Q ss_pred             eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHH-HH-----------HH--Hhc-------CCcchhhHH
Q 023957           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RL-----------NQ--YQA-------GGPTGVELA  137 (275)
Q Consensus        83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~-~l-----------~~--~~~-------~g~~~~~~a  137 (275)
                      .+..++..    .+.+.++..+.++.+++|||+.+..+.++.. ..           ..  +..       +|.+|++.|
T Consensus       288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A  367 (517)
T PRK15317        288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA  367 (517)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence            44455332    5666677789999999999998665443211 10           00  011       888999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EEcC---CC--cEEeec
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTS---TG--DTINAD  210 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~---~g--~~~~~d  210 (275)
                      ..+.  ..+.+++++.+.+.+..      ...+.+.+.+ .||+++.++.+.++..+++.+. +.+.   +|  +++++|
T Consensus       368 ~~L~--~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D  439 (517)
T PRK15317        368 IDLA--GIVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE  439 (517)
T ss_pred             HHHH--hcCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence            9998  56899999998876421      2345555655 5999999999999987644332 4443   33  369999


Q ss_pred             EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .+++++|.+|+..+++..   +.++++|++.+|++++| ++|+|||+|||+..+.
T Consensus       440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~  490 (517)
T PRK15317        440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY  490 (517)
T ss_pred             EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence            999999999999998765   36777899999999998 9999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.96  E-value=1.2e-27  Score=209.69  Aligned_cols=239  Identities=17%  Similarity=0.203  Sum_probs=157.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cCCc-cc-ccccccccccc--cccEEEEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEPS-FG-KRSVINHTDYL--VNGRIVAS   82 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~~~-~~-~~~~~~~~~~~--~~~~~~~~   82 (275)
                      +..|||+|||||||||+||.+|+ +|++|+|||++.. |+........   .... .. ...........  .+++++..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~   80 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA   80 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence            34699999999999999999998 6999999999754 4322111100   0000 00 00001111111  14566666


Q ss_pred             eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHH---HH----------H-hc-------CCcchhhHH
Q 023957           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL---NQ----------Y-QA-------GGPTGVELA  137 (275)
Q Consensus        83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l---~~----------~-~~-------~g~~~~~~a  137 (275)
                      .+..++..    .+.+.++ .+.++++|+|||+.|..|+++....   ..          . ..       +|.+|+|.|
T Consensus        81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A  159 (555)
T TIGR03143        81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEA  159 (555)
T ss_pred             EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHH
Confidence            66665532    3445444 5788999999999977665432110   00          0 00       888999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cCCCcEE----eec
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTI----NAD  210 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~~----~~d  210 (275)
                      ..+.  ..+.+++++.+.+.+..  .   .....+.++..||+++.++.|+++..++....+.   ..+|+..    ++|
T Consensus       160 ~~L~--~~g~~Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D  232 (555)
T TIGR03143       160 VFLT--RYASKVTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKD  232 (555)
T ss_pred             HHHH--ccCCEEEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccc
Confidence            9988  56899999998876421  1   1222333445699999999999997544322222   3456533    366


Q ss_pred             E----EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          211 C----HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       211 ~----vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      .    |++++|++|+..++.. +  +.++++|++.||++++| +.|+|||+|||+.
T Consensus       233 ~~~~~Vi~a~G~~Pn~~l~~~-~--l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~  284 (555)
T TIGR03143       233 AGTFGVFVFVGYAPSSELFKG-V--VELDKRGYIPTNEDMET-NVPGVYAAGDLRP  284 (555)
T ss_pred             ccceEEEEEeCCCCChhHHhh-h--cccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence            6    9999999999988764 3  36777899999999999 8999999999974

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=3.5e-28  Score=190.49  Aligned_cols=255  Identities=21%  Similarity=0.248  Sum_probs=195.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc--------------ccccc------------cCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------------SLRAM------------VEPSFGK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~--------------~~~~~------------~~~~~~~   64 (275)
                      ..+|.+|||||-.|+++|.+.+ .|.++.|+|..-.+|+.--              .+...            -...+.+
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW   98 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW   98 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence            4699999999999999999988 6999999998744442100              00000            0011111


Q ss_pred             ccccccc--------ccc------cccEEEEeeeeEeecC--eEEecCCe--EEeCCEEEEccCCCCCCCchH-------
Q 023957           65 RSVINHT--------DYL------VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTR-------  119 (275)
Q Consensus        65 ~~~~~~~--------~~~------~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~lilatG~~~~~~~~~-------  119 (275)
                      ..+...+        ..+      ..+.++.+....+++.  .+...++.  .+.++++++|+|..|.+|.++       
T Consensus        99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gid  178 (478)
T KOG0405|consen   99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID  178 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccc
Confidence            1111100        011      1467777777777766  55556664  367899999999996666443       


Q ss_pred             H---HHHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957          120 T---ERLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       120 ~---~~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                      .   ..|+.+++      +|++++|+|.-+.  ..+.+++++.|.+..++.|++.+.+.+.+.++..|++++.++.++.+
T Consensus       179 SDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v  256 (478)
T KOG0405|consen  179 SDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV  256 (478)
T ss_pred             cccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence            1   23455554      9999999999998  78999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957          191 SVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       191 ~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      ...++. ..+..+.|.....|.+++|+|..|+..-+....++++++.+|.|.||++.+| |.|+||++||+++--+..+.
T Consensus       257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTPV  335 (478)
T KOG0405|consen  257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTPV  335 (478)
T ss_pred             eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecchH
Confidence            876665 4566677776669999999999999988888888889999999999999999 99999999999976665543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.95  E-value=9.1e-28  Score=205.72  Aligned_cols=240  Identities=21%  Similarity=0.168  Sum_probs=156.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...++|+|||||++||++|+.|+ .|++|+|||+.+..|+.+..  +...............+.+  .++++..+..+  
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--  206 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY--GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV--  206 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee--cCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc--
Confidence            34689999999999999999998 69999999998876532210  0000011111111111111  14455444322  


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCC-CCCCC---chH-------HHHHHH---------------H-h-c------CCcch
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGH-KDPVP---KTR-------TERLNQ---------------Y-Q-A------GGPTG  133 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~-~~~~~---~~~-------~~~l~~---------------~-~-~------~g~~~  133 (275)
                       ...+.+.+. ...||+|++|||+ .|..+   +.+       .+.+..               . . +      +|.+|
T Consensus       207 -~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  284 (449)
T TIGR01316       207 -GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTA  284 (449)
T ss_pred             -CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHH
Confidence             122333222 3469999999998 45543   321       011111               0 1 1      88899


Q ss_pred             hhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEcC---------
Q 023957          134 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS---------  202 (275)
Q Consensus       134 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~---------  202 (275)
                      +++|..+.  ..+.+|+++.+.....  .  .......+.+++.||++++++.+.++..++ +.+ .+.+.         
T Consensus       285 ~d~A~~l~--~~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~  358 (449)
T TIGR01316       285 VDSARTAL--RLGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQID  358 (449)
T ss_pred             HHHHHHHH--HcCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCC
Confidence            99999988  5688899999875421  1  122333456778999999999999886543 222 23321         


Q ss_pred             CC-----------cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          203 TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|           .++++|.||+++|..|+..++...++  +++.+|++.||++++| +.|+|||+|||+..+.
T Consensus       359 ~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~  429 (449)
T TIGR01316       359 SGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAA  429 (449)
T ss_pred             CCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcH
Confidence            22           26999999999999999877766554  6777899999999998 8999999999987554

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.95  E-value=1.1e-26  Score=198.62  Aligned_cols=252  Identities=22%  Similarity=0.287  Sum_probs=201.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcc-ccccccccccccc--ccEEE-Eeee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLV--NGRIV-ASPA   84 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~~   84 (275)
                      ..+++|||.|++|..+.-++.    .-++++++-.+++..+.-..++..+.... .++..+...+|+.  ++++. ..++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            368999999999999997764    25799999999998888777777666532 2333444555654  45554 3456


Q ss_pred             eEeec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHH
Q 023957           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAG  138 (275)
Q Consensus        85 ~~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~  138 (275)
                      +.++.  +.|.++.|..+.||.+++|||+.|++++.+            .+.++.+..            +|..|+|.|.
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~  162 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR  162 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence            66664  488888999999999999999998877644            122222211            7888999999


Q ss_pred             HHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC
Q 023957          139 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  217 (275)
Q Consensus       139 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  217 (275)
                      .|.  ..+-++++++..+.++. +.++.....+...+++.|++++++....++...+....+.++||+.+++|.||+++|
T Consensus       163 ~L~--~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G  240 (793)
T COG1251         163 GLK--DLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG  240 (793)
T ss_pred             HHH--hCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence            999  67899999998888774 677778888999999999999999999998887777789999999999999999999


Q ss_pred             CCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023957          218 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF  271 (275)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~~~  271 (275)
                      .+|+..+....++.  .++  .|.||.++|| +.|+|||+|+|+.+........
T Consensus       241 IrPn~ela~~aGla--vnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLV  289 (793)
T COG1251         241 IRPNDELAKEAGLA--VNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLV  289 (793)
T ss_pred             cccccHhHHhcCcC--cCC--Ceeecccccc-cCCCeeehhhHHHhcCccceeh
Confidence            99999999988874  333  7999999999 9999999999998877665543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.94  E-value=3.1e-26  Score=206.88  Aligned_cols=237  Identities=22%  Similarity=0.275  Sum_probs=156.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeE
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAIN   86 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (275)
                      ...++|+||||||||++||++|+ .|++|+|+|+.+.+|+....   .+.. ..+...+....+++  .++++..+..++
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~---~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd  613 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN---IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD  613 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee---ecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence            45689999999999999999998 69999999999887643211   1111 11111111111111  144554433221


Q ss_pred             eecCeEEecCCeEEeCCEEEEccCCCCC----CCchH------HHHHHHHhc---------------CCcchhhHHHHHh
Q 023957           87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TERLNQYQA---------------GGPTGVELAGEIA  141 (275)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~------~~~l~~~~~---------------~g~~~~~~a~~l~  141 (275)
                           +..++.+...||+||+|||+.+.    +|+..      .+.+..+..               +|.+|+++|..+.
T Consensus       614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~  688 (1019)
T PRK09853        614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL  688 (1019)
T ss_pred             -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence                 23334445679999999999732    23211      233443310               8899999998766


Q ss_pred             hhCCC-CEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-----------------EEcC
Q 023957          142 VDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-----------------YLTS  202 (275)
Q Consensus       142 ~~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~~  202 (275)
                      . ..+ .+|+++.++.. .++.    ..+.+.+.+ +.||+++.+..+.++..++ .+.                 +...
T Consensus       689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg  761 (1019)
T PRK09853        689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVETG  761 (1019)
T ss_pred             h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEeeCC
Confidence            3 334 58999998753 2332    233444444 4799999998888875322 111                 2233


Q ss_pred             CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          203 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++.++++|.||+|+|..|+.+++...++  +++++|++.||+.++| +.|+|||+|||+..|.
T Consensus       762 ~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~  821 (1019)
T PRK09853        762 ETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS  821 (1019)
T ss_pred             CeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch
Confidence            4468999999999999999998876655  6677899999999998 8999999999987654

>PRK12831 putative oxidoreductase; Provisional

Probab=99.94  E-value=3.2e-26  Score=196.52  Aligned_cols=240  Identities=18%  Similarity=0.169  Sum_probs=152.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc-ccccccCCccccc-ccccccccc--cccEEEEeeee
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKR-SVINHTDYL--VNGRIVASPAI   85 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~   85 (275)
                      .+.+||+|||||||||+||++|+ .|++|+|+|+.+.+|+... .++..   ..+.. ......+++  .++++.....+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~~~v  214 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETNVVV  214 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence            45689999999999999999998 6999999999887663321 11111   11111 111111111  13444433322


Q ss_pred             EeecCeEEecCC-eEEeCCEEEEccCC-CCCCCchH----------HHHHHHH--------------h--c------CCc
Q 023957           86 NITENEVLTAEG-RRVVYDYLVIATGH-KDPVPKTR----------TERLNQY--------------Q--A------GGP  131 (275)
Q Consensus        86 ~~~~~~v~~~~~-~~~~~~~lilatG~-~~~~~~~~----------~~~l~~~--------------~--~------~g~  131 (275)
                      .   ..+..++. ..+.||+|++|||+ .|..++++          .+.+...              .  +      +|.
T Consensus       215 ~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  291 (464)
T PRK12831        215 G---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN  291 (464)
T ss_pred             C---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence            1   12222222 23569999999998 45433321          1122111              1  1      889


Q ss_pred             chhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEcC-------
Q 023957          132 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS-------  202 (275)
Q Consensus       132 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~-------  202 (275)
                      +|+++|..+.  ..+.+|+++.+....  .... ....+ +.+++.||++++++.+.++..+++ .+ .+.+.       
T Consensus       292 va~d~A~~l~--r~Ga~Vtlv~r~~~~--~m~a-~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  365 (464)
T PRK12831        292 VAMDAARTAL--RLGAEVHIVYRRSEE--ELPA-RVEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP  365 (464)
T ss_pred             HHHHHHHHHH--HcCCEEEEEeecCcc--cCCC-CHHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence            9999999888  568889999886531  1111 12222 335678999999999988864332 22 12211       


Q ss_pred             -----------CCc--EEeecEEEEcCCCCCCchhhcc-cccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957          203 -----------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 -----------~g~--~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~  265 (275)
                                 +|+  ++++|.||+++|..|+..++.. .++  .++.+|++.||++ ++| +.|+|||+|||+..+.
T Consensus       366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~  440 (464)
T PRK12831        366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAA  440 (464)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch
Confidence                       222  6999999999999998877754 344  5677899999998 888 8999999999987554

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.94  E-value=2.2e-25  Score=179.42  Aligned_cols=252  Identities=32%  Similarity=0.420  Sum_probs=177.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccc----ccccEEEEeeee
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY----LVNGRIVASPAI   85 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   85 (275)
                      ...++|+|+|.|-+|.+++..|- .-++|+|++.++++-+.|...+.....-.....+.+....    ..+..+...+..
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~  132 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT  132 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence            34589999999999999999997 6899999999999876654422221111111111111111    114556677777


Q ss_pred             EeecC--eEE----ecCC----eEEeCCEEEEccCCCCC---CCchH--------HHHHHH--------Hhc--------
Q 023957           86 NITEN--EVL----TAEG----RRVVYDYLVIATGHKDP---VPKTR--------TERLNQ--------YQA--------  128 (275)
Q Consensus        86 ~~~~~--~v~----~~~~----~~~~~~~lilatG~~~~---~~~~~--------~~~l~~--------~~~--------  128 (275)
                      .+|+.  ++.    +.++    -.+.||+||+|+|+.+.   +|+..        .+...+        +.+        
T Consensus       133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~  212 (491)
T KOG2495|consen  133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD  212 (491)
T ss_pred             eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence            77654  332    2233    46889999999999855   44321        001111        111        


Q ss_pred             -------------CCcchhhHHHHHhhhC--------C----CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEc
Q 023957          129 -------------GGPTGVELAGEIAVDF--------P----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  183 (275)
Q Consensus       129 -------------~g~~~~~~a~~l~~~~--------~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  183 (275)
                                   ||++|+|+|.+|....        +    ..++++++..+.+++.++..+.+...+.+.+.||++..
T Consensus       213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~  292 (491)
T KOG2495|consen  213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDT  292 (491)
T ss_pred             HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeec
Confidence                         9999999998887632        2    35899999999999999999999999999999999999


Q ss_pred             CceeeeecCCCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCC--ceEeCCCccccCCCCeEEecc
Q 023957          184 GERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGD  259 (275)
Q Consensus       184 ~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g--~i~v~~~~~~~~~~~v~a~Gd  259 (275)
                      ++.|+.++.+  .+.+...+|  ++|++..+|+++|..|. ++.....-  .+++.+  .+.||+++|.++.+||||+||
T Consensus       293 ~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGD  367 (491)
T KOG2495|consen  293 GTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGD  367 (491)
T ss_pred             ccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhh--cCCccCceeeeeeceeeccCcCceEEecc
Confidence            9999999743  444555566  48999999999998874 34444433  233444  899999999999999999999


Q ss_pred             ccCCCCCC
Q 023957          260 ITDIRVSA  267 (275)
Q Consensus       260 ~~~~~~~~  267 (275)
                      |+..+...
T Consensus       368 ca~~~~~~  375 (491)
T KOG2495|consen  368 CADQRGLK  375 (491)
T ss_pred             ccccccCc
Confidence            99544433

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.94  E-value=2.9e-26  Score=191.17  Aligned_cols=245  Identities=20%  Similarity=0.156  Sum_probs=154.1

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc-cccccCCcccccccc-cccccc-cccEEEEeeee
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVI-NHTDYL-VNGRIVASPAI   85 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~   85 (275)
                      +...++|+|||||++|+++|..|+ .|++|+++|+.+.++..+.. ....   ........ ...++. .++++.....+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~~~~~~v   91 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGVVFHTRTKV   91 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence            445679999999999999999998 69999999998877633211 0100   00000000 000110 13344333222


Q ss_pred             Eee-c------C-----eEEecCCeEEeCCEEEEccCCC-CCC---CchHH-------HHH---H----------HHh--
Q 023957           86 NIT-E------N-----EVLTAEGRRVVYDYLVIATGHK-DPV---PKTRT-------ERL---N----------QYQ--  127 (275)
Q Consensus        86 ~~~-~------~-----~v~~~~~~~~~~~~lilatG~~-~~~---~~~~~-------~~l---~----------~~~--  127 (275)
                      ... .      .     .+.. ++..+.||+||+|||+. +..   |+.+.       +.+   .          ...  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T PRK12770         92 CCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV  170 (352)
T ss_pred             eeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence            111 0      0     1111 11236899999999984 443   33211       001   0          111  


Q ss_pred             --c------CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          128 --A------GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       128 --~------~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                        +      +|.+++++|..+.  ..+.+ ++++.+.+....    .......+.++++|+++++++.+.+++.+++...
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l~--~~g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~  244 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEAV--LLGAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG  244 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence              1      7888999999887  34664 999987654211    1224445668889999999999999875543222


Q ss_pred             EEc--------------------CCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEec
Q 023957          199 YLT--------------------STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG  258 (275)
Q Consensus       199 v~~--------------------~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~G  258 (275)
                      +.+                    .+++.+++|.||+++|++|+..+... ..++.++++|++.||+++++ +.|+||++|
T Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~-~~g~~~~~~g~i~vd~~~~t-~~~~vyaiG  322 (352)
T PRK12770        245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE-CLGIELNRKGEIVVDEKHMT-SREGVFAAG  322 (352)
T ss_pred             EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc-ccCceecCCCcEeeCCCccc-CCCCEEEEc
Confidence            321                    22357999999999999998766554 13346677899999999998 899999999


Q ss_pred             cccCCCCC
Q 023957          259 DITDIRVS  266 (275)
Q Consensus       259 d~~~~~~~  266 (275)
                      ||+..|..
T Consensus       323 D~~~~~~~  330 (352)
T PRK12770        323 DVVTGPSK  330 (352)
T ss_pred             ccccCcch
Confidence            99986543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.93  E-value=5.2e-26  Score=195.85  Aligned_cols=239  Identities=22%  Similarity=0.237  Sum_probs=152.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+.+..  +...............+++  .++++.....+. 
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-  214 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY--GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVG-  214 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec--cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC-
Confidence            45689999999999999999998 69999999999877633211  0000001111111111111  134444333221 


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHHHh---------c--------CCcchhhHHHH
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQYQ---------A--------GGPTGVELAGE  139 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~~---------~--------~g~~~~~~a~~  139 (275)
                        ..+...+. ...||+|++|||+. +.   +|+.+       .+.+....         .        +|.+|+++|..
T Consensus       215 --~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~  291 (457)
T PRK11749        215 --RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART  291 (457)
T ss_pred             --CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence              11222222 26799999999985 43   23221       11222211         1        78899999998


Q ss_pred             HhhhCCCC-EEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC---ceEE--------------
Q 023957          140 IAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL--------------  200 (275)
Q Consensus       140 l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~--------------  200 (275)
                      +.  ..+. +++++.+.... ++.     .....+.+++.||++++++.+.++..+++.   +.+.              
T Consensus       292 l~--~~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~  364 (457)
T PRK11749        292 AK--RLGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRR  364 (457)
T ss_pred             HH--HcCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcc
Confidence            87  3455 89999886532 221     122356678899999999999998765433   2221              


Q ss_pred             ---cCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-CccccCCCCeEEeccccCCC
Q 023957          201 ---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       201 ---~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~Gd~~~~~  264 (275)
                         ..+++++++|.||+++|.+|+..++.. ..++.++.+|++.||+ .++| +.|+|||+|||+..+
T Consensus       365 ~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~  430 (457)
T PRK11749        365 VPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTGA  430 (457)
T ss_pred             cCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCc
Confidence               012347999999999999998766542 2233677889999998 6777 899999999999644

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.93  E-value=4.2e-25  Score=200.48  Aligned_cols=236  Identities=22%  Similarity=0.285  Sum_probs=151.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ..++|+|||||||||+||++|+ +|++|+|||+++.+|+....   .+.. ..+...+....+++  .++++..+..   
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~---~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~---  609 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN---IIPEFRISAESIQKDIELVKFHGVEFKYGCS---  609 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee---cccccCCCHHHHHHHHHHHHhcCcEEEEecc---
Confidence            4589999999999999999998 69999999999887643211   1111 11111111111111  1444443311   


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCCCC----CCch------HHHHHHHHh---------c------CCcchhhHHHHHhh
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKT------RTERLNQYQ---------A------GGPTGVELAGEIAV  142 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~------~~~~l~~~~---------~------~g~~~~~~a~~l~~  142 (275)
                        ..+..++.+...||+|++|||+.+.    +|+.      ..+.+..+.         +      +|.+|+++|..+..
T Consensus       610 --~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R  687 (1012)
T TIGR03315       610 --PDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR  687 (1012)
T ss_pred             --cceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence              1122233345679999999998732    2221      122333221         1      88899999987764


Q ss_pred             hCCC-CEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE---------------EcCCCc
Q 023957          143 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---------------LTSTGD  205 (275)
Q Consensus       143 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v---------------~~~~g~  205 (275)
                       ..+ .+|+++.++.. .++.    ..+.+.+.+ +.||+++.+..+.+++  ++.+.+               ...+|+
T Consensus       688 -l~Ga~kVtLVyRr~~~~Mpa----~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Ge  759 (1012)
T TIGR03315       688 -VPGVEKVTVVYRRTKRYMPA----SREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGE  759 (1012)
T ss_pred             -hCCCceEEEEEccCcccccc----CHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCC
Confidence             234 58999988763 2222    223344433 4799999988877776  222211               111233


Q ss_pred             --EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCC
Q 023957          206 --TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       206 --~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                        +++||.||+|+|..|+..++...++  +++.+|++.||+. ++| +.|+|||+|||+..|..
T Consensus       760 e~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~t  820 (1012)
T TIGR03315       760 TVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPAT  820 (1012)
T ss_pred             eEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccH
Confidence              6899999999999999988876554  6778899999986 777 89999999999876543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.93  E-value=1.2e-24  Score=199.15  Aligned_cols=240  Identities=17%  Similarity=0.193  Sum_probs=154.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccccccccccccccc--cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ..++|+|||||||||+||++|+ +|++|+|||+.+.+|+.   +...+. ...+.+.+....+.+  .++++.....+. 
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~---l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV---LRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce---EEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-
Confidence            4689999999999999999998 69999999999877743   111111 111111111111111  144444332221 


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHH--------------H---h-c------CCcc
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQ--------------Y---Q-A------GGPT  132 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~--------------~---~-~------~g~~  132 (275)
                        ..+.+++.....||+|++|||+. |.   +|+.+       .+.+..              .   . +      +|.+
T Consensus       381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t  458 (944)
T PRK12779        381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT  458 (944)
T ss_pred             --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence              23455555556799999999995 54   34321       122211              0   1 1      8889


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC--Cc-eEEc--------
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SD-TYLT--------  201 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~--------  201 (275)
                      |+++|..+.  ..|++|+++.++...  . .+.....+.+ ..+.|++++.+..++++..+++  .+ .+.+        
T Consensus       459 A~D~A~ta~--R~Ga~Vtlv~rr~~~--~-mpa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~  532 (944)
T PRK12779        459 AMDAARTAK--RLGGNVTIVYRRTKS--E-MPARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEP  532 (944)
T ss_pred             HHHHHHHHH--HcCCEEEEEEecCcc--c-ccccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccc
Confidence            999999988  567789999887531  1 1122233333 3467999999998888865422  11 1111        


Q ss_pred             -C--------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957          202 -S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       202 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~  265 (275)
                       .        +|  .+++||.||+|.|+.|+.. +.....+++++++|.+.||+. ++| +.|+|||+|||+..+.
T Consensus       533 d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~  606 (944)
T PRK12779        533 DKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS  606 (944)
T ss_pred             cCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH
Confidence             1        23  3699999999999999764 333334557788899999974 777 8999999999997654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.93  E-value=5.7e-24  Score=182.14  Aligned_cols=233  Identities=22%  Similarity=0.374  Sum_probs=166.2

Q ss_pred             HHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-ccccccc--cccc--cccEEE-EeeeeEeec--CeEEec
Q 023957           27 LVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPAINITE--NEVLTA   95 (275)
Q Consensus        27 ~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~~~~~~--~~v~~~   95 (275)
                      +||.+|+   +..+|+|||+++.+.+....++........ ......+  .+++  .++++. ..++..++.  +++.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            4677776   368999999999876654333333222111 1111111  1121  256664 456666663  345443


Q ss_pred             ---CCeEEe--CCEEEEccCCCCCCCchHH---------------HHHHHHh-----c------CCcchhhHHHHHhhhC
Q 023957           96 ---EGRRVV--YDYLVIATGHKDPVPKTRT---------------ERLNQYQ-----A------GGPTGVELAGEIAVDF  144 (275)
Q Consensus        96 ---~~~~~~--~~~lilatG~~~~~~~~~~---------------~~l~~~~-----~------~g~~~~~~a~~l~~~~  144 (275)
                         ++..+.  ||+||+|||+.|..|.++.               ..+..+.     +      +|.+|+|+|..++  .
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~--~  158 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR--E  158 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH--h
Confidence               234667  9999999999876543321               1111111     1      8889999999988  5


Q ss_pred             CCCEEEEEeCCCccc-CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957          145 PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  223 (275)
Q Consensus       145 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  223 (275)
                      .+.+++++.+.+.++ +.+++++.+.+.+.+++.||+++.++.|.+++.++. . +.+.+|+++++|.+|+++|.+|+.+
T Consensus       159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence            688999999988773 567777888899999999999999999999976443 2 4567788999999999999999988


Q ss_pred             hhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          224 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       224 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      ++...++  .++++|++.||++++| +.|+|||+|||+..+..
T Consensus       237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~  276 (427)
T TIGR03385       237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI  276 (427)
T ss_pred             HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence            8877665  6677899999999998 89999999999987653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=1.5e-25  Score=203.25  Aligned_cols=242  Identities=19%  Similarity=0.181  Sum_probs=152.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...++|+|||||||||+||.+|+ +|++|+|||+.+.+|+....  +......+........+.+  .++++..+..+  
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v--  504 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFRLPKKIVDVEIENLKKLGVKFETDVIV--  504 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE--
Confidence            34689999999999999999998 69999999998776633210  1111111111111111111  14444433222  


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-CCC---CchH-------HHHHHHH--------------h--c------CCcchh
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTR-------TERLNQY--------------Q--A------GGPTGV  134 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~~~---~~~~-------~~~l~~~--------------~--~------~g~~~~  134 (275)
                       ...+..++.....||+|++|||+. |..   |+.+       .+.+...              .  +      +|.+|+
T Consensus       505 -~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~  583 (752)
T PRK12778        505 -GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAM  583 (752)
T ss_pred             -CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHH
Confidence             122333333456799999999984 543   3321       1112110              0  1      888999


Q ss_pred             hHHHHHhhhCCCCE-EEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEcC---------
Q 023957          135 ELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS---------  202 (275)
Q Consensus       135 ~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~---------  202 (275)
                      ++|..+.  ..+.+ |+++.+....  ..... ...+ +.+++.||+++.++.+.++..+++ .+ .+.+.         
T Consensus       584 d~A~~~~--r~Ga~~Vtlv~r~~~~--~~~~~-~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~  657 (752)
T PRK12778        584 DSARTAK--RLGAERVTIVYRRSEE--EMPAR-LEEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDA  657 (752)
T ss_pred             HHHHHHH--HcCCCeEEEeeecCcc--cCCCC-HHHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCC
Confidence            9999887  45665 9999887541  11111 1222 346778999999998888864432 22 12221         


Q ss_pred             CC-----------cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          203 TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|           .+++||.||+|+|+.|+..++... .++.++.+|++.||++++| +.|+|||+|||+..+.
T Consensus       658 ~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~  729 (752)
T PRK12778        658 SGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGA  729 (752)
T ss_pred             CCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcH
Confidence            12           269999999999999987665432 2346777899999999988 8999999999997654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.91  E-value=3.4e-24  Score=184.90  Aligned_cols=245  Identities=18%  Similarity=0.161  Sum_probs=148.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...++|+|||||++|+++|..|+ +|++|+|||+.+.+|+.+..  +...............+++  .++++.....+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  218 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK  218 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC
Confidence            34589999999999999999998 69999999999887633211  0000011111111111111  1344443332221


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHH-------------Hh---c------CCcchh
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQ-------------YQ---A------GGPTGV  134 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~-------------~~---~------~g~~~~  134 (275)
                      +.   .. +.....||++++|||+. +.   +|+.+       .+.+..             ..   +      +|.+|+
T Consensus       219 ~~---~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~  294 (471)
T PRK12810        219 DI---TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGM  294 (471)
T ss_pred             cC---CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHH
Confidence            10   00 11124799999999997 43   33321       111111             01   1      888999


Q ss_pred             hHHHHHhhhCCCCEEEEEeCCCcccCcC-C----cchHH-HHHHHHHhCCCEEEcCceeeeecCCCCCce-EE-----cC
Q 023957          135 ELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL-----TS  202 (275)
Q Consensus       135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~-----~~  202 (275)
                      ++|..+.. ....+++.+.......... .    +.... ...+.+++.|+++++++.++++..+++.+. +.     ..
T Consensus       295 e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~  373 (471)
T PRK12810        295 DCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELG  373 (471)
T ss_pred             HHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEec
Confidence            99976652 3345777655443221110 0    00111 134556778999999999999975444332 32     22


Q ss_pred             CC---------cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeC-CCccccCCCCeEEeccccCCCC
Q 023957          203 TG---------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ~g---------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|         .++++|.||+|+|..|+. .++...++  .++.+|++.+| ++++| +.|+||++|||+..+.
T Consensus       374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~  444 (471)
T PRK12810        374 EGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS  444 (471)
T ss_pred             CCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch
Confidence            22         479999999999999974 46655544  67788999998 68888 8999999999997554

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.91  E-value=3.3e-24  Score=191.01  Aligned_cols=240  Identities=19%  Similarity=0.216  Sum_probs=150.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINIT   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   88 (275)
                      ..++|+|||||++||++|+.|+ .|++|+|||+.+.+|+.+..  +...............+.+  .++++.....+..+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY--GIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee--cCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence            4579999999999999999998 69999999999887643211  0100111111110001111  13444333222111


Q ss_pred             cCeEEecCCeEEeCCEEEEccCCCCC----CCchH-------HHHHHHHh--------c------CCcchhhHHHHHhhh
Q 023957           89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------TERLNQYQ--------A------GGPTGVELAGEIAVD  143 (275)
Q Consensus        89 ~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~-------~~~l~~~~--------~------~g~~~~~~a~~l~~~  143 (275)
                         +...+. ...||++++|||+.+.    +|+.+       .+.+....        +      +|.++++.|..+.. 
T Consensus       270 ---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~-  344 (652)
T PRK12814        270 ---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR-  344 (652)
T ss_pred             ---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH-
Confidence               111111 2359999999998732    33321       12222211        0      78899999988773 


Q ss_pred             CCCCEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cC---------------CC
Q 023957          144 FPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TS---------------TG  204 (275)
Q Consensus       144 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~g  204 (275)
                      ....+|+++.+... .++..    ...+.+. .+.||+++.+..+.++..+++...+.   +.               +|
T Consensus       345 ~Ga~~Vtlv~r~~~~~mpa~----~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g  419 (652)
T PRK12814        345 LGAESVTILYRRTREEMPAN----RAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG  419 (652)
T ss_pred             cCCCeEEEeeecCcccCCCC----HHHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence            33357999988764 23322    2233333 35799999999888887554433221   11               23


Q ss_pred             c--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCC
Q 023957          205 D--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       205 ~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +  .+++|.||+++|..|+..++...++  .++.+|++.||+. ++| +.|+|||+|||+..+..
T Consensus       420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~  481 (652)
T PRK12814        420 SEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADI  481 (652)
T ss_pred             ceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchH
Confidence            2  6899999999999999888866555  6677899999975 666 89999999999976643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=189.14  Aligned_cols=240  Identities=18%  Similarity=0.169  Sum_probs=147.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc-cccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ..++|+|||||||||+||.+|+ +|++|+|||+.+..|+.. ..++..   ....+.+....+.+  .++++.....+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~---rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSF---RLPRDIIDREVQRLVDIGVKIETNKVIGK  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCcc---CCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence            4689999999999999999998 699999999998776321 111111   11111111111111  1455544433211


Q ss_pred             ecCeEEecCCe-EEeCCEEEEccCCC-CC---CCchH-------HHHHHHH----------------h-c------CCcc
Q 023957           88 TENEVLTAEGR-RVVYDYLVIATGHK-DP---VPKTR-------TERLNQY----------------Q-A------GGPT  132 (275)
Q Consensus        88 ~~~~v~~~~~~-~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~----------------~-~------~g~~  132 (275)
                         .+...+.. ...||+||+|||+. |.   +|+.+       .+.+...                . +      +|.+
T Consensus       506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t  582 (1006)
T PRK12775        506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT  582 (1006)
T ss_pred             ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence               11111111 24699999999985 44   34311       1222111                0 1      8889


Q ss_pred             hhhHHHHHhhhCCC-CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc--------
Q 023957          133 GVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--------  201 (275)
Q Consensus       133 ~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--------  201 (275)
                      |+++|..+.  ..| ..++++.+.....  . +..... .+.+++.||++++++.+.++..++ +.+ .+.+        
T Consensus       583 A~D~A~~a~--rlGa~~Vtiv~rr~~~e--m-~a~~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~  656 (1006)
T PRK12775        583 AMDCLRVAK--RLGAPTVRCVYRRSEAE--A-PARIEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP  656 (1006)
T ss_pred             HHHHHHHHH--HcCCCEEEEEeecCccc--C-CCCHHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence            999888776  334 4678777654321  1 111122 234677899999999988886432 222 1221        


Q ss_pred             -C--------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-----CccccCCCCeEEeccccCCCC
Q 023957          202 -S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       202 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-----~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                       .        +|  .++++|.||+|.|..|+..++... .++.++.+|.+.+|+     .++| +.|+|||+|||+..+.
T Consensus       657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~  734 (1006)
T PRK12775        657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA  734 (1006)
T ss_pred             CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc
Confidence             1        12  269999999999999987665432 234667789999997     5777 8999999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.89  E-value=1.1e-22  Score=175.09  Aligned_cols=239  Identities=17%  Similarity=0.167  Sum_probs=147.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   88 (275)
                      +.++|+||||||+|+++|..|+ +|++|+++|+.+.+|+....  +...............+++.  ++++.....+.  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--  215 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--  215 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--
Confidence            4589999999999999999998 69999999999887632210  11111111111111111111  33433222111  


Q ss_pred             cCeEEecCCeEEeCCEEEEccCCCCC----CCchHH-------HHHHH------------------Hh-c------CCcc
Q 023957           89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRT-------ERLNQ------------------YQ-A------GGPT  132 (275)
Q Consensus        89 ~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~~-------~~l~~------------------~~-~------~g~~  132 (275)
                      . .+..++ ....||.+++|||+.+.    +|+.+.       +.+..                  .. +      +|.+
T Consensus       216 ~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  293 (467)
T TIGR01318       216 R-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT  293 (467)
T ss_pred             C-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence            0 111111 12469999999999753    333110       00100                  01 1      6678


Q ss_pred             hhhHHHHHhhhCCC-CEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc-------
Q 023957          133 GVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT-------  201 (275)
Q Consensus       133 ~~~~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------  201 (275)
                      +++.|..+.  ..+ .+|+++.+.+.. ++..    . ...+.+++.||+++.++.+.++..++ +.+ .+++       
T Consensus       294 a~d~A~~a~--~~Ga~~Vtvv~r~~~~~~~~~----~-~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  366 (467)
T TIGR01318       294 AMDCVRTAI--RLGAASVTCAYRRDEANMPGS----R-REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE  366 (467)
T ss_pred             HHHHHHHHH--HcCCCeEEEEEecCcccCCCC----H-HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence            899888766  345 579999987643 2221    1 22344667899999999998886432 222 1221       


Q ss_pred             --CC---------C--cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeC----CCccccCCCCeEEeccccCC
Q 023957          202 --ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       202 --~~---------g--~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~----~~~~~~~~~~v~a~Gd~~~~  263 (275)
                        .+         |  .++++|.||+++|+.|+. .++...++  +++++|++.+|    .+++| +.|+||++|||+..
T Consensus       367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~  443 (467)
T TIGR01318       367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG  443 (467)
T ss_pred             cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC
Confidence              11         2  379999999999999974 45555444  67778999999    56787 89999999999976


Q ss_pred             CCC
Q 023957          264 RVS  266 (275)
Q Consensus       264 ~~~  266 (275)
                      +..
T Consensus       444 ~~~  446 (467)
T TIGR01318       444 ADL  446 (467)
T ss_pred             ccH
Confidence            653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.89  E-value=5.2e-23  Score=184.08  Aligned_cols=240  Identities=18%  Similarity=0.188  Sum_probs=146.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   88 (275)
                      ..++|+|||||||||++|+.|+ .|++|+|||+.+.+|+....  +...............+++.  ++++.....+..+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            4689999999999999999998 69999999999887643211  11111111111111111111  3333322211100


Q ss_pred             cCeEEecCCeEEeCCEEEEccCCCC----CCCchH-------HHHH----HH--------------Hhc-------CCcc
Q 023957           89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR-------TERL----NQ--------------YQA-------GGPT  132 (275)
Q Consensus        89 ~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~-------~~~l----~~--------------~~~-------~g~~  132 (275)
                         +...+ ....||.+++|||+..    .+|...       .+.+    +.              ...       +|.+
T Consensus       404 ---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  479 (654)
T PRK12769        404 ---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT  479 (654)
T ss_pred             ---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence               11111 1236999999999862    233211       0011    00              001       7788


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc--------
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--------  201 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--------  201 (275)
                      |++.|..+.. ....+|+++.+.... ++.     .....+.+++.|+++++++.++++..++ +.+ .+.+        
T Consensus       480 a~d~A~~a~r-~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  553 (654)
T PRK12769        480 AMDCVRTALR-HGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP  553 (654)
T ss_pred             HHHHHHHHHH-cCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence            9999876652 333579998876543 221     2223455778999999999988886432 222 2322        


Q ss_pred             -CCC---------c--EEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeCC----CccccCCCCeEEeccccCCC
Q 023957          202 -STG---------D--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       202 -~~g---------~--~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~~----~~~~~~~~~v~a~Gd~~~~~  264 (275)
                       .+|         +  ++++|.||+|.|+.|+. .++...++  +++.+|.+.+|+    +++| +.|+|||+|||+..+
T Consensus       554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~  630 (654)
T PRK12769        554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRGA  630 (654)
T ss_pred             CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCCC
Confidence             122         2  69999999999999974 45555444  678889999986    4788 899999999998766


Q ss_pred             CC
Q 023957          265 VS  266 (275)
Q Consensus       265 ~~  266 (275)
                      ..
T Consensus       631 ~~  632 (654)
T PRK12769        631 DL  632 (654)
T ss_pred             cH
Confidence            53

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.89  E-value=8.8e-22  Score=182.69  Aligned_cols=238  Identities=15%  Similarity=0.135  Sum_probs=150.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCc----ccccccccccccccccEEEE-eeee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS----FGKRSVINHTDYLVNGRIVA-SPAI   85 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~   85 (275)
                      ..+||+|||||||||+||.+|+ .|++|+|+|+++..|+.+..........    +.......... +.++++.. ..+.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~v~v~~~t~V~  240 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA-MPEVTLLPRTTAF  240 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc-CCCcEEEcCCEEE
Confidence            3589999999999999999998 6999999999988775432211111000    00010011111 12344432 2222


Q ss_pred             EeecC-eE------E----------e-cCCeEEeCCEEEEccCCCCCCCchH---------HHHHHHH-------hc---
Q 023957           86 NITEN-EV------L----------T-AEGRRVVYDYLVIATGHKDPVPKTR---------TERLNQY-------QA---  128 (275)
Q Consensus        86 ~~~~~-~v------~----------~-~~~~~~~~~~lilatG~~~~~~~~~---------~~~l~~~-------~~---  128 (275)
                      .+... .+      .          . +....+.+++||+|||+.+..|+++         ...+..+       ..   
T Consensus       241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V  320 (985)
T TIGR01372       241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI  320 (985)
T ss_pred             EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence            22211 00      0          0 1112688999999999986544321         1111111       11   


Q ss_pred             ----CCcchhhHHHHHhhhCCC-CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC-
Q 023957          129 ----GGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-  202 (275)
Q Consensus       129 ----~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-  202 (275)
                          +|..+++.|..+.  ..+ ..+++++..+.        ....+.+.+++.||+++.++.+.++..++....+++. 
T Consensus       321 vViG~G~~g~e~A~~L~--~~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~  390 (985)
T TIGR01372       321 VVATNNDSAYRAAADLL--AAGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR  390 (985)
T ss_pred             EEECCCHHHHHHHHHHH--HcCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence                7888999999988  446 56778876543        2345667788899999999999999865543334432 


Q ss_pred             ---CCcEEeecEEEEcCCCCCCchhhcccccccccCCC--CceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          203 ---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH--GMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       203 ---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~--g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                         ++++++||.|+++.|..|+..++...+..+.++..  +++.     .| +.|+||++|||+.....
T Consensus       391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t-~v~gVyaaGD~~g~~~~  453 (985)
T TIGR01372       391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD-AVQGCILAGAANGLFGL  453 (985)
T ss_pred             cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC-CCCCeEEeeccCCccCH
Confidence               45689999999999999999998877765444433  2322     24 78999999999977643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.89  E-value=1e-21  Score=167.85  Aligned_cols=247  Identities=25%  Similarity=0.364  Sum_probs=181.7

Q ss_pred             EEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-cccccccccc--ccccEEE-EeeeeEee
Q 023957           16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDY--LVNGRIV-ASPAINIT   88 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~   88 (275)
                      ++|||+|++|+++|..|.   ...+++++.++....+....+......... .........+  ..++.+. ...+..++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            589999999999999876   477888888887766554443332222111 0111110001  1134443 33455665


Q ss_pred             c--CeEEecCCeEEeCCEEEEccCCCCCCCc-------h---HHHHHHHHhc------------CCcchhhHHHHHhhhC
Q 023957           89 E--NEVLTAEGRRVVYDYLVIATGHKDPVPK-------T---RTERLNQYQA------------GGPTGVELAGEIAVDF  144 (275)
Q Consensus        89 ~--~~v~~~~~~~~~~~~lilatG~~~~~~~-------~---~~~~l~~~~~------------~g~~~~~~a~~l~~~~  144 (275)
                      .  +.+.+.++ .+.||++++|||+.|..+.       .   ....++.+..            +|..++++|..+.  .
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~--~  157 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA--K  157 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH--H
Confidence            4  47888778 8999999999999977652       0   0122222221            8899999999999  6


Q ss_pred             CCCEEEEEeCCCcccCcCC-cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce---EEcCCCcEEeecEEEEcCCCCC
Q 023957          145 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .|.++++++..+++.+... +.+.+.+.+.++++|++++++..+.+++..++...   +...++..+++|.+++++|.+|
T Consensus       158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence            7899999999999887666 78999999999999999999999999987765443   5677888999999999999999


Q ss_pred             CchhhcccccccccCCCCceEeCCCccccC-CCCeEEeccccCCCCCC
Q 023957          221 GSDWLKDTILKDSLDTHGMLMVDENLRVKG-QKNIFAIGDITDIRVSA  267 (275)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-~~~v~a~Gd~~~~~~~~  267 (275)
                      +..+......+ ....+|++.||+.+++ + .++||++|||+..+...
T Consensus       238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~-~~~~~v~a~GD~~~~~~~~  283 (415)
T COG0446         238 NVVLANDALPG-LALAGGAVLVDERGGT-SKDPDVYAAGDVAEIPAAE  283 (415)
T ss_pred             cHHHHhhCccc-eeccCCCEEEcccccc-CCCCCEEeccceEeeeccc
Confidence            87777665422 3456789999999998 5 89999999999888765

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.2e-22  Score=159.18  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=169.4

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC--CCccccccccccc----------------c----------C
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK--EYFEITWASLRAM----------------V----------E   59 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~--~~~~~~~~~~~~~----------------~----------~   59 (275)
                      ..+..||.+|||||-+||+||.+++ .|.+|.++|-=  ...|..|+.-...                +          .
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG   94 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG   94 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence            3456799999999999999999998 69999999831  1133333210000                0          0


Q ss_pred             Cccccccc--------------cccccccc-------ccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCC
Q 023957           60 PSFGKRSV--------------INHTDYLV-------NGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP  114 (275)
Q Consensus        60 ~~~~~~~~--------------~~~~~~~~-------~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~  114 (275)
                      ....+...              +...+|.-       .+..++.....+++.++..  ..+  +.+.++.+++|||.+|.
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr  174 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR  174 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence            00000000              00111111       1222333333444443332  223  46788999999999987


Q ss_pred             CCchHH--------HHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC
Q 023957          115 VPKTRT--------ERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK  177 (275)
Q Consensus       115 ~~~~~~--------~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (275)
                      .|.++.        +.+-.+..         +++.++|+|..|.  ..+.++++..|+ -++.+|+.++.+.+.+.++++
T Consensus       175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~  251 (503)
T KOG4716|consen  175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEER  251 (503)
T ss_pred             CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHh
Confidence            776542        22322222         8899999999998  678888877764 446789999999999999999


Q ss_pred             CCEEEcCceeeeecCCCCC-ceEEcC-----CCcEEeecEEEEcCCCCCCchhhcccccccccCC-CCceEeCCCccccC
Q 023957          178 KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKG  250 (275)
Q Consensus       178 gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~  250 (275)
                      |+++...+.+.+++.-+++ ..|...     ++-+-++|.|++|.|..+..+-+.....++..+. .|.|.+|+.-+| +
T Consensus       252 Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~  330 (503)
T KOG4716|consen  252 GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-N  330 (503)
T ss_pred             CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-C
Confidence            9999999888888775543 334322     2225789999999999998877777666667754 588999999998 8


Q ss_pred             CCCeEEeccccC
Q 023957          251 QKNIFAIGDITD  262 (275)
Q Consensus       251 ~~~v~a~Gd~~~  262 (275)
                      .|.|||+||+..
T Consensus       331 vp~vyAvGDIl~  342 (503)
T KOG4716|consen  331 VPYVYAVGDILE  342 (503)
T ss_pred             CCceEEecceec
Confidence            999999999973

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.9e-22  Score=155.86  Aligned_cols=241  Identities=22%  Similarity=0.278  Sum_probs=160.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---cccccCCcccc--c---ccccccccccccEEEE-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAMVEPSFGK--R---SVINHTDYLVNGRIVA-   81 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~-   81 (275)
                      ..|||+||||||||-+||.+.+ +|.+.-++-  +.+|++...   +..++.....+  .   .+..+.+.+ .+.+.. 
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y-~vDimn~  286 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY-DVDVMNL  286 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhheeccccccchHHHHHHHHHHhhc-Cchhhhh
Confidence            4699999999999999997776 688765552  123322111   11111111000  0   011111111 111111 


Q ss_pred             eeeeEeec-------CeEEecCCeEEeCCEEEEccCCC---CCCCchHH---HHHHHHhc---------------CCcch
Q 023957           82 SPAINITE-------NEVLTAEGRRVVYDYLVIATGHK---DPVPKTRT---ERLNQYQA---------------GGPTG  133 (275)
Q Consensus        82 ~~~~~~~~-------~~v~~~~~~~~~~~~lilatG~~---~~~~~~~~---~~l~~~~~---------------~g~~~  133 (275)
                      .+...+.+       ..+.+.+|-.+..+.+|++||+.   -.+|+...   ++....++               +|.+|
T Consensus       287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSG  366 (520)
T COG3634         287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSG  366 (520)
T ss_pred             hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcch
Confidence            11122211       17888899999999999999998   34555321   11111111               89999


Q ss_pred             hhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCc-eEEcC---CCc--E
Q 023957          134 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTS---TGD--T  206 (275)
Q Consensus       134 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~  206 (275)
                      +|.|..|+  -.-..+++++-.+.+      ...+-+++.++.. +++|+.|..-++|..+++.+ .+.+.   +|+  .
T Consensus       367 vEAAIDLA--Giv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~  438 (520)
T COG3634         367 VEAAIDLA--GIVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH  438 (520)
T ss_pred             HHHHHhHH--hhhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence            99999998  456788888876654      3456677777764 79999999999999875543 34443   333  5


Q ss_pred             EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          207 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       207 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +.-+-|++-.|..||++|++..   ++++++|-|.||.+..| |.|+|||+|||+..|+..
T Consensus       439 l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~yKQ  495 (520)
T COG3634         439 LELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYKQ  495 (520)
T ss_pred             EEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCccce
Confidence            6678899999999999999876   37889999999999999 999999999999888765

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.6e-22  Score=145.84  Aligned_cols=242  Identities=18%  Similarity=0.221  Sum_probs=162.8

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc----------ccccccC----Cccccccccccccc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA----------SLRAMVE----PSFGKRSVINHTDY   73 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~   73 (275)
                      ++..+.+|+|||+|||+-.||.+++ ...+-+|+|---.-+...+          +++++.+    +.+.+........ 
T Consensus         4 ~~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r-   82 (322)
T KOG0404|consen    4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSER-   82 (322)
T ss_pred             cceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHh-
Confidence            3445568999999999999999987 5899999995322221111          1111111    1111111111111 


Q ss_pred             ccccEEEEeeeeEeecC----eEEecCCeEEeCCEEEEccCCC---CCCCchH-HHHHHHHhc-----------------
Q 023957           74 LVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKTR-TERLNQYQA-----------------  128 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~---~~~~~~~-~~~l~~~~~-----------------  128 (275)
                       .+.+++...+..++..    ++.+ +.+.+.+|.+|+|||+.   ..+|+.. .+.+++-.+                 
T Consensus        83 -~Gt~i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~l  160 (322)
T KOG0404|consen   83 -FGTEIITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPL  160 (322)
T ss_pred             -hcceeeeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCee
Confidence             1556666666665532    5666 55688999999999987   3455431 111211111                 


Q ss_pred             ----CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCC---ceE-
Q 023957          129 ----GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS---DTY-  199 (275)
Q Consensus       129 ----~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~---~~v-  199 (275)
                          +|.+++|-|..|.  ..+.+|.+++|++.+      .....+++..++ .+|++++|+.+.+...+++.   +.+ 
T Consensus       161 aVIGGGDsA~EEA~fLt--kyaskVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ik  232 (322)
T KOG0404|consen  161 AVIGGGDSAMEEALFLT--KYASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIK  232 (322)
T ss_pred             EEEcCcHHHHHHHHHHH--hhccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEE
Confidence                8889999999998  668999999999876      455666666554 58999999998887766432   222 


Q ss_pred             --EcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          200 --LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       200 --~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                        .+.+-+.++.+-++++.|..|+..+++.   ++++|.+|++.+-+.-..+++|++||+||+....
T Consensus       233 n~~tge~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k  296 (322)
T KOG0404|consen  233 NVKTGEETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK  296 (322)
T ss_pred             ecccCcccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHH
Confidence              2233357999999999999999999876   4488999999988664444899999999997544

>PRK13984 putative oxidoreductase; Provisional

Probab=99.87  E-value=3e-21  Score=171.81  Aligned_cols=244  Identities=17%  Similarity=0.164  Sum_probs=144.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (275)
                      ...++|+|||+|++|+++|..|+ .|++|+|||+.+..++....  +...............+.+.  ++++.....+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~--~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  358 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY--GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK  358 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee--cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence            34689999999999999999998 69999999999877632211  00000111111111111111  334333222211


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-C---CCCchH-------HHHHHHHh-------------c------CCcchhhHH
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTR-------TERLNQYQ-------------A------GGPTGVELA  137 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~---~~~~~~-------~~~l~~~~-------------~------~g~~~~~~a  137 (275)
                      +   +..++ ....||+||+|||+. +   .+|+.+       .+.+..+.             +      +|.+|+++|
T Consensus       359 ~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A  434 (604)
T PRK13984        359 D---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA  434 (604)
T ss_pred             c---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence            1   11111 134799999999976 2   333321       11222111             1      788999999


Q ss_pred             HHHhhhC----CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc--------C--
Q 023957          138 GEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S--  202 (275)
Q Consensus       138 ~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~--  202 (275)
                      ..+....    ...+++++..... ....... ...+.+ +.+.||+++.++.+.++..+++.+ .+.+        .  
T Consensus       435 ~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G  511 (604)
T PRK13984        435 RSMARLQKMEYGEVNVKVTSLERT-FEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEG  511 (604)
T ss_pred             HHHHhccccccCceEEEEeccccC-cccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCC
Confidence            9887421    2246776643211 1112222 222333 345799999998887775433322 1221        1  


Q ss_pred             ---------CCcEEeecEEEEcCCCCCCchhhccc-ccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          203 ---------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ---------~g~~~~~d~vv~a~G~~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                               ++.++++|.||+++|+.|+..++... +..+.+ .+|++.||++++| ++|+|||+|||+..+.
T Consensus       512 ~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~  582 (604)
T PRK13984        512 RFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD  582 (604)
T ss_pred             CccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH
Confidence                     12379999999999999988877532 222333 4688999999998 8999999999997664

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.87  E-value=1.1e-21  Score=152.65  Aligned_cols=253  Identities=18%  Similarity=0.214  Sum_probs=160.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCcccccccccccccc-cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   87 (275)
                      .+++|+|||||.+|+++|..+.+   .-+|.|+|..+..-++++...................+.. .+..++.+.+..+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f  117 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEF  117 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhc
Confidence            57899999999999999998862   4589999998776555433211111000001111111111 2445566666666


Q ss_pred             ec--CeEEecCCeEEeCCEEEEccCCCCC---CCchH--------------------HHHHHHHhc--------CCcc--
Q 023957           88 TE--NEVLTAEGRRVVYDYLVIATGHKDP---VPKTR--------------------TERLNQYQA--------GGPT--  132 (275)
Q Consensus        88 ~~--~~v~~~~~~~~~~~~lilatG~~~~---~~~~~--------------------~~~l~~~~~--------~g~~--  132 (275)
                      ++  +++.+.+|+++.||++|+|+|.+..   +++..                    .+.++.+.+        .+++  
T Consensus       118 ~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKC  197 (446)
T KOG3851|consen  118 NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKC  197 (446)
T ss_pred             CCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCcccc
Confidence            54  4899999999999999999997732   22211                    122333332        1111  


Q ss_pred             ------hhhHHHHHhh-hC--CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-C
Q 023957          133 ------GVELAGEIAV-DF--PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-S  202 (275)
Q Consensus       133 ------~~~~a~~l~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~  202 (275)
                            .+-++..... ..  ...++.....-+.+.  --....+++.+..++++|++.......++..+++....+. .
T Consensus       198 AGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~  275 (446)
T KOG3851|consen  198 AGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD  275 (446)
T ss_pred             CCCchhhhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence                  1122222211 11  122333333323221  1234678888889999999999999999887765444332 2


Q ss_pred             C-C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCCCCCC
Q 023957          203 T-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSASMI  270 (275)
Q Consensus       203 ~-g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~~~~~  270 (275)
                      + |  .+++++.+-+.+...+ ++.+..+.+   .|..||+.||.. +|+.++||||++|||.+.|+.+.++
T Consensus       276 kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaA  343 (446)
T KOG3851|consen  276 KPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAA  343 (446)
T ss_pred             CCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHH
Confidence            2 4  3788999988888776 677777664   467899999976 8888999999999999999987653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.87  E-value=2.5e-21  Score=167.34  Aligned_cols=243  Identities=19%  Similarity=0.189  Sum_probs=141.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ..++|+|||||++|+++|..|+ .|++|+|+|+.+.+|+..   ...+.. ...........+++  .++++.....+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l---~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL---MYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee---eccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            3479999999999999999998 699999999998765221   111110 01111111111111  1444443322211


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-CCC---CchH-------HHHHHH-----------------Hh-c------CCcc
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTR-------TERLNQ-----------------YQ-A------GGPT  132 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~~~---~~~~-------~~~l~~-----------------~~-~------~g~~  132 (275)
                      +   +.. +.....||.|++|||+. |..   |+.+       .+.+..                 .. +      +|.+
T Consensus       219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~  294 (485)
T TIGR01317       219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT  294 (485)
T ss_pred             c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence            1   101 11235799999999987 443   3211       111110                 01 1      8888


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccCcCC-----cc------hHHHHHHHHHhCCCEE-EcCceeeeecCCC-CCc-e
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GSD-T  198 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gv~i-~~~~~v~~i~~~~-~~~-~  198 (275)
                      +++.|..+.. ..+.++++++..+.......     +.      ......+..+..|+.+ +.++.+.++..++ +.+ .
T Consensus       295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~  373 (485)
T TIGR01317       295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA  373 (485)
T ss_pred             HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence            9998765542 44578999987665432110     11      1122333333456543 4566666665432 222 2


Q ss_pred             EEc--------CCC-----------cEEeecEEEEcCCCC-CCchhhcccccccccCCCCceEe-CCCccccCCCCeEEe
Q 023957          199 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAI  257 (275)
Q Consensus       199 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~~~~~~~~~~~~~~g~i~v-~~~~~~~~~~~v~a~  257 (275)
                      +.+        ++|           .++++|.||+++|.. |+..++...++  +++.+|++.+ |+.++| +.|+|||+
T Consensus       374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa  450 (485)
T TIGR01317       374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA  450 (485)
T ss_pred             EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence            221        123           279999999999986 77777776554  6677888855 567888 89999999


Q ss_pred             ccccCCCC
Q 023957          258 GDITDIRV  265 (275)
Q Consensus       258 Gd~~~~~~  265 (275)
                      |||+..+.
T Consensus       451 GD~~~g~~  458 (485)
T TIGR01317       451 GDCRRGQS  458 (485)
T ss_pred             eccCCCcH
Confidence            99987554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.86  E-value=5.1e-21  Score=170.63  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=144.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   88 (275)
                      ..++|+|||||++||++|+.|+ .|++|+|+|+.+.+|+.+..  +.....+.........+++.  ++++.....+.. 
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~--gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF--GIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR-  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec--cCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence            4689999999999999999998 69999999999987633210  11111111111111111111  333332221110 


Q ss_pred             cCeEEecCCeEEeCCEEEEccCCCC----CCCchHH-------HHHH----H---------H-----h-c------CCcc
Q 023957           89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-------ERLN----Q---------Y-----Q-A------GGPT  132 (275)
Q Consensus        89 ~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~~-------~~l~----~---------~-----~-~------~g~~  132 (275)
                        .+...+ ....||.+++|||+.+    .+|....       +.+.    .         +     . +      +|.+
T Consensus       386 --~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~  462 (639)
T PRK12809        386 --DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT  462 (639)
T ss_pred             --cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence              111111 1346999999999863    2332110       1111    0         0     0 1      6778


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCce-EEc---C----
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDT-YLT---S----  202 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---~----  202 (275)
                      +++.+..+.. ....+|+++.++... ++..    ...+. .+++.|+++++++.++++..++ +.+. +.+   .    
T Consensus       463 a~d~a~~~~~-~Ga~~Vt~v~rr~~~~~~~~----~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  536 (639)
T PRK12809        463 TMDCLRTSIR-LNAASVTCAYRRDEVSMPGS----RKEVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP  536 (639)
T ss_pred             HHHHHHHHHH-cCCCeEEEeeecCcccCCCC----HHHHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence            8888876552 333589999887543 2221    22222 3567899999999998886433 2221 211   1    


Q ss_pred             --CC-----------cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeCCC----ccccCCCCeEEeccccCCC
Q 023957          203 --TG-----------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDEN----LRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       203 --~g-----------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~~~----~~~~~~~~v~a~Gd~~~~~  264 (275)
                        +|           ..+++|.||+|.|+.|+. .++...+  ++++.+|++.+|+.    ++| +.|+|||+|||+..+
T Consensus       537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~g--l~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~  613 (639)
T PRK12809        537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSG--IKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGA  613 (639)
T ss_pred             CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccC--cccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCc
Confidence              12           268999999999999863 4555444  46778899999863    787 899999999998765


Q ss_pred             CC
Q 023957          265 VS  266 (275)
Q Consensus       265 ~~  266 (275)
                      ..
T Consensus       614 ~~  615 (639)
T PRK12809        614 DL  615 (639)
T ss_pred             hH
Confidence            43

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.86  E-value=4.1e-20  Score=157.80  Aligned_cols=247  Identities=16%  Similarity=0.119  Sum_probs=141.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccccc-cc-ccccccc--cccEEEEee
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKR-SV-INHTDYL--VNGRIVASP   83 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~   83 (275)
                      ...++|+|||||||||+||..|.   +|++|+|||+.+..++   .+.....+..... .. .....++  .++++... 
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n-   99 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN-   99 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC-
Confidence            34579999999999999999996   4999999999997763   2222222221110 00 0011111  12333221 


Q ss_pred             eeEeecCeEEecCCeEEeCCEEEEccCCCC----CCCchH-------HHHHHH-------------Hh-c-------CCc
Q 023957           84 AINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR-------TERLNQ-------------YQ-A-------GGP  131 (275)
Q Consensus        84 ~~~~~~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~-------~~~l~~-------------~~-~-------~g~  131 (275)
                       +.+. ..+..++. ...||.||+|||+.+    .+|+.+       .+.+..             +. .       +|.
T Consensus       100 -v~vg-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGn  176 (491)
T PLN02852        100 -VTLG-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGN  176 (491)
T ss_pred             -EEEC-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCH
Confidence             1111 12223222 246999999999873    244421       111110             01 1       888


Q ss_pred             chhhHHHHHhhh-------------------CCCCEEEEEeCCCcccCcCCc-c--------------------------
Q 023957          132 TGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIGP-K--------------------------  165 (275)
Q Consensus       132 ~~~~~a~~l~~~-------------------~~~~~v~~~~~~~~~~~~~~~-~--------------------------  165 (275)
                      +++++|..+...                   ..-.+|+++.|+......+.+ +                          
T Consensus       177 vAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~  256 (491)
T PLN02852        177 VALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDE  256 (491)
T ss_pred             HHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchh
Confidence            999999887631                   123579999887642111100 0                          


Q ss_pred             -----------hHHHHHHHHHh---------CCCEEEcCceeeeecCC--C-CCc-eEEcC-----------------CC
Q 023957          166 -----------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GSD-TYLTS-----------------TG  204 (275)
Q Consensus       166 -----------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~-~~~-~v~~~-----------------~g  204 (275)
                                 ..+.+.+...+         +++.+++.....+|..+  + +.+ .+.+.                 +|
T Consensus       257 ~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tg  336 (491)
T PLN02852        257 EELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTG  336 (491)
T ss_pred             hhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCC
Confidence                       11222222222         46888888877777531  1 122 22221                 23


Q ss_pred             c--EEeecEEEEcCCCC--CCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          205 D--TINADCHFLCTGKP--VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       205 ~--~~~~d~vv~a~G~~--~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +  .++||.||.+.|++  |...+.-....++..+.+|++.+|+.++| +.|+|||+|||...|.
T Consensus       337 e~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~  400 (491)
T PLN02852        337 EFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT  400 (491)
T ss_pred             CEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence            2  68999999999998  44332111111234567899999988887 8999999999997554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.85  E-value=1.5e-20  Score=160.78  Aligned_cols=232  Identities=16%  Similarity=0.239  Sum_probs=139.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc--------------------------------
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------------------------   57 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~--------------------------------   57 (275)
                      ...++|+|||||++||+||++|. .|++|+|+|+++.+|+.|......                                
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~   87 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG   87 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence            34589999999999999999998 699999999999999877431100                                


Q ss_pred             -cCCccccc---------cccccc---cccc------ccE--E-EEeeeeEeecC----eEEecCC----eEEeCCEEEE
Q 023957           58 -VEPSFGKR---------SVINHT---DYLV------NGR--I-VASPAINITEN----EVLTAEG----RRVVYDYLVI  107 (275)
Q Consensus        58 -~~~~~~~~---------~~~~~~---~~~~------~~~--~-~~~~~~~~~~~----~v~~~~~----~~~~~~~lil  107 (275)
                       .+..+...         ......   +++.      ++.  + ...++..++..    .+.+.++    .+..||+||+
T Consensus        88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv  167 (461)
T PLN02172         88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV  167 (461)
T ss_pred             CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence             00000000         000000   1110      111  1 23455555432    4444322    1457999999


Q ss_pred             ccC--CCCCCCchHHHHHHHHh----------------c-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC
Q 023957          108 ATG--HKDPVPKTRTERLNQYQ----------------A-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI  162 (275)
Q Consensus       108 atG--~~~~~~~~~~~~l~~~~----------------~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~  162 (275)
                      |||  ..|.+|.++  +++.+.                .       +|.+|+++|..+.  ..+++++++.+......  
T Consensus       168 AtG~~~~P~~P~ip--G~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~--~~a~~V~l~~r~~~~~~--  241 (461)
T PLN02172        168 CNGHYTEPNVAHIP--GIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIA--KVAKEVHIASRASESDT--  241 (461)
T ss_pred             eccCCCCCcCCCCC--CcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHH--HhCCeEEEEEeeccccc--
Confidence            999  456666542  111111                1       8889999999998  56889999998654211  


Q ss_pred             CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEe
Q 023957          163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV  242 (275)
Q Consensus       163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v  242 (275)
                              .+.+......+..+..|..+..++   .|++.||+.+++|.||+|+|+.++.+++...+. +..+.+.-...
T Consensus       242 --------~~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~L  309 (461)
T PLN02172        242 --------YEKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPL  309 (461)
T ss_pred             --------cccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhh
Confidence                    001111233455566666654322   488899999999999999999999988875331 12222221123


Q ss_pred             CCCccccC-CCCeEEeccc
Q 023957          243 DENLRVKG-QKNIFAIGDI  260 (275)
Q Consensus       243 ~~~~~~~~-~~~v~a~Gd~  260 (275)
                      .++.=.+. .|+++++|=.
T Consensus       310 y~~~f~~~~~p~LafiG~~  328 (461)
T PLN02172        310 YKHVFPPALAPGLSFIGLP  328 (461)
T ss_pred             HHhhcCCCCCCcEEEEecc
Confidence            33322223 4899999964

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.85  E-value=3.5e-20  Score=163.49  Aligned_cols=240  Identities=19%  Similarity=0.234  Sum_probs=143.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...++|+|||+||+||++|+.|+ .|++|+|+|+.+.+|+.+..  +........+......+..  .++++........
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY--GIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence            34579999999999999999998 69999999999887743211  1101111111111111111  1233322211100


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCCCC----CCchH-------HHHHHHHh--------c------CCcchhhHHHHHhh
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------TERLNQYQ--------A------GGPTGVELAGEIAV  142 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~-------~~~l~~~~--------~------~g~~~~~~a~~l~~  142 (275)
                      +.   ... .....||.+++|+|+...    ++...       ...+....        +      +|.++++.+..+..
T Consensus       213 ~~---~~~-~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~  288 (564)
T PRK12771        213 DI---TLE-QLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR  288 (564)
T ss_pred             cC---CHH-HHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence            10   000 012258999999998732    22211       11222211        0      56677888776553


Q ss_pred             hCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-e-----EEc----CCC--------
Q 023957          143 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-----YLT----STG--------  204 (275)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-----v~~----~~g--------  204 (275)
                       ....+++++.+.+...  . +.....+.+ +.+.|++++++..+.++..++++. .     +..    .+|        
T Consensus       289 -lga~~v~ii~r~~~~~--~-~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~  363 (564)
T PRK12771        289 -LGAEEVTIVYRRTRED--M-PAHDEEIEE-ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGE  363 (564)
T ss_pred             -cCCCEEEEEEecCccc--C-CCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCc
Confidence             3346788888765321  1 112233333 456799999999999987554322 1     221    122        


Q ss_pred             -cEEeecEEEEcCCCCCCchhhcc-cccccccCCCCceEeCC-CccccCCCCeEEeccccCCCC
Q 023957          205 -DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       205 -~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                       .++++|.||+|+|..|+..++.. .++  . +++|++.+|+ .++| +.|+||++|||+..+.
T Consensus       364 ~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~~  423 (564)
T PRK12771        364 EETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGPR  423 (564)
T ss_pred             eEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCch
Confidence             37999999999999998878764 333  4 6789999998 5666 8999999999987553

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-19  Score=145.18  Aligned_cols=251  Identities=20%  Similarity=0.301  Sum_probs=176.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccccccccccc----CCc------c-----cccccc-ccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMV----EPS------F-----GKRSVI-NHTDY   73 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~----~~~------~-----~~~~~~-~~~~~   73 (275)
                      +...+|||+|.+..+++...+   .+.+|++|..++...|.-..++..+    ++.      +     .++.+. .-..|
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F  257 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF  257 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence            456899999999988887776   4889999988777554322222110    000      0     000000 00001


Q ss_pred             c-----------cccEEEEe-eeeEee--cCeEEecCCeEEeCCEEEEccCCCCCCCch-------------------HH
Q 023957           74 L-----------VNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT-------------------RT  120 (275)
Q Consensus        74 ~-----------~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~lilatG~~~~~~~~-------------------~~  120 (275)
                      +           .++.+..+ .++.++  .+.+.+++|.++.||.++||||..|.....                   +.
T Consensus       258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF  337 (659)
T KOG1346|consen  258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADF  337 (659)
T ss_pred             eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHH
Confidence            0           13444433 334444  448999999999999999999999764221                   12


Q ss_pred             HHHHHHhc---------CCcchhhHHHHHhhhCC--CCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceee
Q 023957          121 ERLNQYQA---------GGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN  188 (275)
Q Consensus       121 ~~l~~~~~---------~g~~~~~~a~~l~~~~~--~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~  188 (275)
                      +.+++...         +|..|.|+|..|...++  +.+|.-+......+. -.+.-+.++..+.+++.|+.++.|..|.
T Consensus       338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~  417 (659)
T KOG1346|consen  338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVE  417 (659)
T ss_pred             HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhh
Confidence            33333322         88899999998887654  445554444433332 2333467777888999999999999999


Q ss_pred             eecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCC-CceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          189 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       189 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ++......+.+.++||.++..|+||.|+|-.||.+++...++  ++|++ |.+.||..++.  ..|||++||++-+.+..
T Consensus       418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL--eiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~  493 (659)
T KOG1346|consen  418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL--EIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV  493 (659)
T ss_pred             hhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc--eeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence            999888888899999999999999999999999999999888  45554 88999999997  79999999998776543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.76  E-value=1.2e-19  Score=139.98  Aligned_cols=104  Identities=28%  Similarity=0.409  Sum_probs=60.6

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcc-c-ccccc-----cccc-c-ccccEE-EEee
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF-G-KRSVI-----NHTD-Y-LVNGRI-VASP   83 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~-~-~~~~~~-~~~~   83 (275)
                      ||+|||||+||++||.+|+ .+.+++|+|+.+...+....+........ . .....     ...+ + ..++++ +...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            7999999999999999998 69999999998864432222111110000 0 00000     1110 0 124444 3344


Q ss_pred             eeEeecC--e-------E---EecCCeEEeCCEEEEccCCCCCCCch
Q 023957           84 AINITEN--E-------V---LTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        84 ~~~~~~~--~-------v---~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                      +..++..  .       +   ...++..+.||++|+|||+.|..|.+
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i  127 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI  127 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence            4444322  1       1   23455689999999999988665543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.75  E-value=1.1e-17  Score=126.92  Aligned_cols=249  Identities=20%  Similarity=0.311  Sum_probs=147.7

Q ss_pred             eEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc--ccccccccC-CcccccccccccccccccEEEEeeeeEee
Q 023957           15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT--WASLRAMVE-PSFGKRSVINHTDYLVNGRIVASPAINIT   88 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (275)
                      +.+|||||+||.+||-.|+   +..+++++...+....-  +..+..... ....+......-.-++  +++.. +...+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~--~~~~~-v~~~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFR--RFLND-VVTWD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHH--HHHHh-hhhhc
Confidence            3689999999999998886   57899999887764311  111111110 0111111111000000  11111 22232


Q ss_pred             --cCeEEecCCeEEeCCEEEEccCCCCCCCch----------HHHHHHHHhc------------CCcchhhHHHHHhhhC
Q 023957           89 --ENEVLTAEGRRVVYDYLVIATGHKDPVPKT----------RTERLNQYQA------------GGPTGVELAGEIAVDF  144 (275)
Q Consensus        89 --~~~v~~~~~~~~~~~~lilatG~~~~~~~~----------~~~~l~~~~~------------~g~~~~~~a~~l~~~~  144 (275)
                        .+.+.+.+|..+.|++|++|+|..|..-..          +.+..+.+..            .|-+++|.+.++.   
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk---  154 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK---  154 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence              347888899999999999999999764221          1111111111            5666777776665   


Q ss_pred             CCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhC------------CCEEEcCce-------------------------
Q 023957          145 PEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISK------------KVDVKLGER-------------------------  186 (275)
Q Consensus       145 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------gv~i~~~~~-------------------------  186 (275)
                       ..+|+|....+.+.. .++++..+.+...++..            .++.+.+++                         
T Consensus       155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese  233 (334)
T KOG2755|consen  155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE  233 (334)
T ss_pred             -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence             778888887777654 45555555444333110            011111110                         


Q ss_pred             -----------eeeecCCCCCceEE---cCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC
Q 023957          187 -----------VNLDSVSEGSDTYL---TSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG  250 (275)
Q Consensus       187 -----------v~~i~~~~~~~~v~---~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~  250 (275)
                                 +.... ..+...+.   ..++  ..+.||.++.++|..|+.++.-...+  .+.++|.+.||..++| +
T Consensus       234 er~l~~l~~~~~~~~d-~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s  309 (334)
T KOG2755|consen  234 NRSLTYLRNCVITSTD-TSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S  309 (334)
T ss_pred             hhhhHHhhhheeeecc-chhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence                       00000 00000111   1112  25789999999999999986655444  5677899999999999 9


Q ss_pred             CCCeEEeccccCCCCCCCCCCCCC
Q 023957          251 QKNIFAIGDITDIRVSASMIFPQV  274 (275)
Q Consensus       251 ~~~v~a~Gd~~~~~~~~~~~~~~~  274 (275)
                      .|++||+||++.....+...|.|+
T Consensus       310 lpdvFa~gDvctt~~~~s~~wqQm  333 (334)
T KOG2755|consen  310 LPDVFAAGDVCTTTWEPSTLWQQM  333 (334)
T ss_pred             ccceeeecceeccCCCCchhhhcc
Confidence            999999999999888888888885

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.73  E-value=1.2e-17  Score=144.87  Aligned_cols=238  Identities=21%  Similarity=0.323  Sum_probs=113.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc-------c---------------ccCCcccccc--cc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-------A---------------MVEPSFGKRS--VI   68 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~-------~---------------~~~~~~~~~~--~~   68 (275)
                      ++|+|||||++||++|+.|. .|++++++||++.+|+.|....       .               +.+..++...  ..
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            68999999999999999987 7999999999999998885210       0               0000011100  00


Q ss_pred             cc---ccc----------ccccEEEEeeeeEeec---------CeEEecC-Ce--EEeCCEEEEccCCC--CCCCchHHH
Q 023957           69 NH---TDY----------LVNGRIVASPAINITE---------NEVLTAE-GR--RVVYDYLVIATGHK--DPVPKTRTE  121 (275)
Q Consensus        69 ~~---~~~----------~~~~~~~~~~~~~~~~---------~~v~~~~-~~--~~~~~~lilatG~~--~~~~~~~~~  121 (275)
                      ..   .+|          ...++ ...++..+..         ..+.+.+ +.  +..||+|++|||..  |.+|....+
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence            00   001          01111 1222232211         1455543 32  45689999999965  666642223


Q ss_pred             HHHHHhc-----------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-CcC---------------
Q 023957          122 RLNQYQA-----------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EFI---------------  162 (275)
Q Consensus       122 ~l~~~~~-----------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-~~~---------------  162 (275)
                      +++.+.+                       +|.+|+++|.++.  ...+++++..|..... +..               
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~--~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~  238 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELS--RVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRF  238 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHT--TTSCCEEEECC------------------------
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHH--HhcCCeEEEEecccccccccccccccccccccccc
Confidence            4444433                       8899999999998  4567777777655421 100               


Q ss_pred             --------CcchHHHHH-HHH------HhCCCE------------------------EEcCceeeeecCCCCCceEEcCC
Q 023957          163 --------GPKAGDKTR-DWL------ISKKVD------------------------VKLGERVNLDSVSEGSDTYLTST  203 (275)
Q Consensus       163 --------~~~~~~~~~-~~~------~~~gv~------------------------i~~~~~v~~i~~~~~~~~v~~~~  203 (275)
                              ...+...+. +.+      +..|+.                        |.....|.++.    ...+.+.|
T Consensus       239 ~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~----~~~v~F~D  314 (531)
T PF00743_consen  239 SSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFT----ENSVIFED  314 (531)
T ss_dssp             ------------------------------------------------------------EE-EEEE-----SSEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence                    000001110 000      001110                        11112233332    23577899


Q ss_pred             CcEE-eecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCcccc--CCCCeEEecccc
Q 023957          204 GDTI-NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK--GQKNIFAIGDIT  261 (275)
Q Consensus       204 g~~~-~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~--~~~~v~a~Gd~~  261 (275)
                      |+++ ++|.||+|||+....++++...+..   .++.+....+.=.+  .+|++..+|=+.
T Consensus       315 Gs~~e~vD~II~~TGY~~~fpFL~~~~~~~---~~~~~~LYk~vfp~~~~~ptLafIG~~~  372 (531)
T PF00743_consen  315 GSTEEDVDVIIFCTGYKFSFPFLDESLIKV---DDNRVRLYKHVFPPNLDHPTLAFIGLVQ  372 (531)
T ss_dssp             SEEEEE-SEEEE---EE---TTB-TTTT-S----SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred             cccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence            9865 6999999999998888988764422   23334444443221  468899999764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.73  E-value=1.5e-16  Score=130.63  Aligned_cols=130  Identities=22%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHH-hCCCEEEcCceeeeecCCC-CCceEEcCC---C--c
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSE-GSDTYLTST---G--D  205 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~-~~~~v~~~~---g--~  205 (275)
                      ++..|..+.+.++..++++....-+.   ++. ..+.+....+ +.||+++.+.. .+|.+.+ +...|..+|   |  .
T Consensus       387 slKqA~~Ike~~Pd~~v~I~YmDiRa---fG~-~yEefY~~~Q~~~gV~fIRGrv-aei~e~p~~~l~V~~EdTl~g~~~  461 (622)
T COG1148         387 SLKQAQLIKERYPDTDVTIYYMDIRA---FGK-DYEEFYVRSQEDYGVRFIRGRV-AEIAEFPKKKLIVRVEDTLTGEVK  461 (622)
T ss_pred             HHhhhhhhhhcCCCcceeEEEEEeec---cCc-cHHHHHHhhhhhhchhhhcCCh-HHheeCCCCeeEEEEEeccCccce
Confidence            45566777777778888777654332   223 3333443344 78999987664 4444443 343454332   3  3


Q ss_pred             EEeecEEEEcCCCCCCch---hhcccccccccCCCCceEeC-CCccc--cCCCCeEEeccccCCCCCCCC
Q 023957          206 TINADCHFLCTGKPVGSD---WLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       206 ~~~~d~vv~a~G~~~~~~---~~~~~~~~~~~~~~g~i~v~-~~~~~--~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      ++++|+||+++|..|...   ....  +++..+++|++... +.++.  .+.++||.+|-|.++...+..
T Consensus       462 e~~~DLVVLa~Gmep~~g~~kia~i--LgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~s  529 (622)
T COG1148         462 EIEADLVVLATGMEPSEGAKKIAKI--LGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADS  529 (622)
T ss_pred             ecccceEEEeeccccCcchHHHHHh--cCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHH
Confidence            799999999999988432   2223  45578899998766 44433  168899999999888776543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.71  E-value=1.4e-15  Score=123.07  Aligned_cols=258  Identities=18%  Similarity=0.196  Sum_probs=164.2

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCccccccccccc--c------------CCcc----------
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAM--V------------EPSF----------   62 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~~~~~~~~~~--~------------~~~~----------   62 (275)
                      |++..+|++.||-||+.|+.|..|.  .+.+++.+||.+.+.++.+.+...  +            .+..          
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~   80 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE   80 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence            4556799999999999999999998  368999999999987665543211  0            1110          


Q ss_pred             ---------ccccccccccc----------ccccEEEEeeee---EeecC-----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           63 ---------GKRSVINHTDY----------LVNGRIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        63 ---------~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                               .+.......+|          ++.+++ ..++.   .++..     .+.+.++..+.++.||+++|..|.+
T Consensus        81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I  159 (436)
T COG3486          81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI  159 (436)
T ss_pred             cchHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence                     00000111111          111111 12222   22211     3566667789999999999999999


Q ss_pred             CchH-----------HHHHHHHhc-----------CCcchhhHHHHHhhhCCCC--EEEEEeCCCcccCc---------C
Q 023957          116 PKTR-----------TERLNQYQA-----------GGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------I  162 (275)
Q Consensus       116 ~~~~-----------~~~l~~~~~-----------~g~~~~~~a~~l~~~~~~~--~v~~~~~~~~~~~~---------~  162 (275)
                      |+.-           .+.++...+           +|.+|.|+...|.......  ++.|+.|+..+.+.         +
T Consensus       160 P~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F  239 (436)
T COG3486         160 PPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF  239 (436)
T ss_pred             ChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence            9742           112211111           8899999988887655544  48889998776442         2


Q ss_pred             CcchHH------------------------------HHHHHH-------HhCCCEEEcCceeeeecCCCCC-ceEEcC--
Q 023957          163 GPKAGD------------------------------KTRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLTS--  202 (275)
Q Consensus       163 ~~~~~~------------------------------~~~~~~-------~~~gv~i~~~~~v~~i~~~~~~-~~v~~~--  202 (275)
                      .|+..+                              .+.+.+       .+.++.++.+++|..++..+++ +.+.+.  
T Consensus       240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~  319 (436)
T COG3486         240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH  319 (436)
T ss_pred             CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec
Confidence            222222                              222222       1346789999999999877765 555432  


Q ss_pred             ---CCcEEeecEEEEcCCCCCC-chhhcccccccccCCCCceEeCCCccccCC----CCeEEeccccCCCCCC
Q 023957          203 ---TGDTINADCHFLCTGKPVG-SDWLKDTILKDSLDTHGMLMVDENLRVKGQ----KNIFAIGDITDIRVSA  267 (275)
Q Consensus       203 ---~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~v~a~Gd~~~~~~~~  267 (275)
                         +..+++.|.||+|||+... +.|+....-.+.++++|.+.|+++++....    ..||+-|-+.+.....
T Consensus       320 ~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig  392 (436)
T COG3486         320 ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIG  392 (436)
T ss_pred             cCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccC
Confidence               2358899999999999843 457766554456788999999999766321    3699999887665543

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.69  E-value=1.3e-15  Score=123.35  Aligned_cols=59  Identities=22%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC--CCC
Q 023957          162 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPV  220 (275)
Q Consensus       162 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~  220 (275)
                      ....+.+.+.+.+++.||+++++++|.+++.++....+.+++|+++.||.+|+|+|  ..|
T Consensus       109 kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P  169 (408)
T COG2081         109 KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP  169 (408)
T ss_pred             chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence            34578999999999999999999999999998888889999998899999999999  455

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.62  E-value=3.8e-15  Score=122.85  Aligned_cols=207  Identities=21%  Similarity=0.198  Sum_probs=111.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCccccccccccc--cCCccccccc---------------------
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAM--VEPSFGKRSV---------------------   67 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------   67 (275)
                      .+|+++||.||++|+.|..|.  ...++.++|+++.+.++.+.+...  ++..+..+.+                     
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            479999999999999999998  469999999999877665543211  1111111100                     


Q ss_pred             ----------------ccc----cccccccEEEEeeeeEeec--------CeEEe----cCCeEEeCCEEEEccCCCCCC
Q 023957           68 ----------------INH----TDYLVNGRIVASPAINITE--------NEVLT----AEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        68 ----------------~~~----~~~~~~~~~~~~~~~~~~~--------~~v~~----~~~~~~~~~~lilatG~~~~~  115 (275)
                                      ..+    .+.+.+.-....++..+..        -.|.+    .++..+.++.||+|+|..|.+
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i  161 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI  161 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence                            000    0011221122334444421        14554    244688999999999999888


Q ss_pred             CchHH------------HHHHHH---hc--------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc---------CC
Q 023957          116 PKTRT------------ERLNQY---QA--------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG  163 (275)
Q Consensus       116 ~~~~~------------~~l~~~---~~--------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~  163 (275)
                      |..-.            +.+...   ..        +|.+|.|++..|....+..+++++.|++.+.+.         +.
T Consensus       162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~  241 (341)
T PF13434_consen  162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS  241 (341)
T ss_dssp             -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred             CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence            86321            112221   11        999999999999877666899999998875331         11


Q ss_pred             -------------------------------cchHHHHHHHH------HhCCCEEEcCceeeeecCCCC-CceEEcCC--
Q 023957          164 -------------------------------PKAGDKTRDWL------ISKKVDVKLGERVNLDSVSEG-SDTYLTST--  203 (275)
Q Consensus       164 -------------------------------~~~~~~~~~~~------~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~--  203 (275)
                                                     +++.+.+.+.+      .+..+.++.+++|+.++..++ .+.+.+.+  
T Consensus       242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~  321 (341)
T PF13434_consen  242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ  321 (341)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred             chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence                                           22232332222      123488999999999988774 77776654  


Q ss_pred             ---CcEEeecEEEEcCCCC
Q 023957          204 ---GDTINADCHFLCTGKP  219 (275)
Q Consensus       204 ---g~~~~~d~vv~a~G~~  219 (275)
                         ...+++|.||+|||++
T Consensus       322 ~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  322 TGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             T--EEEEEESEEEE---EE
T ss_pred             CCCeEEEecCEEEEcCCcc
Confidence               2478999999999975

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.62  E-value=3.2e-15  Score=126.73  Aligned_cols=243  Identities=22%  Similarity=0.126  Sum_probs=141.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccc-ccccccccccc--ccEEEEeeeeE
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLV--NGRIVASPAIN   86 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~   86 (275)
                      ...++|+|||||||||++|..|. .|++|+++|+.+..|+   .+...+...... +......+++.  ++++.....+.
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG---ll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG  197 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG---LLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG  197 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce---eEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence            34589999999999999999998 6999999999998873   222222211111 11111222221  33443332222


Q ss_pred             eecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHHHh-----------------c------CCcc
Q 023957           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQYQ-----------------A------GGPT  132 (275)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~~-----------------~------~g~~  132 (275)
                      .+   +..++ ..-.||.+++++|+. |.   +|..+       .+.|....                 +      +|.+
T Consensus       198 ~~---it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~T  273 (457)
T COG0493         198 RD---ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDT  273 (457)
T ss_pred             Cc---CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCC
Confidence            11   11111 123569999999986 22   33321       11111111                 0      8889


Q ss_pred             hhhHHHHHhhhCCCC-EEEEEeCCCcc--cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cce-EE-----cC
Q 023957          133 GVELAGEIAVDFPEK-KVTLVHKGSRL--LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDT-YL-----TS  202 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~-~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-v~-----~~  202 (275)
                      +++++....  ..|. .++.+.+...-  .......-.+...+...+.|++........++..+++ .+. +.     ..
T Consensus       274 a~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~  351 (457)
T COG0493         274 AMDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPG  351 (457)
T ss_pred             HHHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccccccc
Confidence            999986655  3444 66666422211  1111122344455667778888777776666654332 111 11     10


Q ss_pred             --------------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCc-cccCCCCeEEeccccCC
Q 023957          203 --------------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDI  263 (275)
Q Consensus       203 --------------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~-~~~~~~~v~a~Gd~~~~  263 (275)
                                    .|  ..+++|.|+.+.|+.+...........+..+..|.+.+++.. +| +.|++||.||+...
T Consensus       352 ~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g  428 (457)
T COG0493         352 EYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG  428 (457)
T ss_pred             CcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccc
Confidence                          12  268899999999988764332222223466788999999998 77 89999999999874

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.60  E-value=5.9e-14  Score=118.49  Aligned_cols=138  Identities=14%  Similarity=0.046  Sum_probs=92.6

Q ss_pred             CCcchhhHH-HHHhh--hCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE-EcCCC
Q 023957          129 GGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTG  204 (275)
Q Consensus       129 ~g~~~~~~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g  204 (275)
                      .+..|+|.+ ..+..  ...|.+++.+...+..++..  .+.+.+.+.+++.|++++.+++|.+++..++.+.. ...+|
T Consensus       223 PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g  300 (422)
T PRK05329        223 PAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH  300 (422)
T ss_pred             CceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC
Confidence            566788887 44431  14588999998887776653  67888999999999999999999999876654443 34445


Q ss_pred             c--EEeecEEEEcCCCCCCchhh------cc--cccccccCC-----------------CCceEeCCCccc------cCC
Q 023957          205 D--TINADCHFLCTGKPVGSDWL------KD--TILKDSLDT-----------------HGMLMVDENLRV------KGQ  251 (275)
Q Consensus       205 ~--~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~~~~-----------------~g~i~v~~~~~~------~~~  251 (275)
                      +  .+++|.||+|+|..+...+.      .+  .++.+...+                 .-.+.+|..++.      +..
T Consensus       301 ~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~  380 (422)
T PRK05329        301 GDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVI  380 (422)
T ss_pred             ceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeec
Confidence            3  58999999999976543331      11  111110000                 012555555543      157


Q ss_pred             CCeEEeccccCCCCCCC
Q 023957          252 KNIFAIGDITDIRVSAS  268 (275)
Q Consensus       252 ~~v~a~Gd~~~~~~~~~  268 (275)
                      +|+||+|++...+++..
T Consensus       381 ~nl~a~G~vl~g~d~~~  397 (422)
T PRK05329        381 ENLYAAGAVLGGYDPIR  397 (422)
T ss_pred             cceEEeeehhcCCchHH
Confidence            99999999998887653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.56  E-value=2.7e-14  Score=128.89  Aligned_cols=36  Identities=31%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...++|+|||||||||+||++|+ +|++|+|+|+.+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i  417 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI  417 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence            45689999999999999999998 7999999998754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.56  E-value=3.5e-14  Score=126.83  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=43.5

Q ss_pred             cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeC-CCccccCCCCeEEeccccCC
Q 023957          205 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       205 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      +.++||+|++|.|+.. ++..-..+++++.++++.|... ..+.+ +.+++||+|||-..
T Consensus      2040 e~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg 2097 (2142)
T KOG0399|consen 2040 EIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG 2097 (2142)
T ss_pred             eeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-cccceeecccccCC
Confidence            4789999999999975 4444445566688888877654 44776 89999999999753

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.52  E-value=3.6e-13  Score=115.19  Aligned_cols=146  Identities=21%  Similarity=0.312  Sum_probs=90.8

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCcccccccc--cc---c--------cCCccc-cccccc---
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASL--RA---M--------VEPSFG-KRSVIN---   69 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~~--~~---~--------~~~~~~-~~~~~~---   69 (275)
                      +...++||+|||||++||++|++|+ .|.+ ++|+||+..+|..|...  ++   .        ....+. ......   
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            4456789999999999999999998 5877 99999999988765321  11   0        000010 000000   


Q ss_pred             -------cccccc---ccEEE-EeeeeEeecC----eEEecCCeE--EeCCEEEEccCCC--CCCCchHHHHHHHHhc--
Q 023957           70 -------HTDYLV---NGRIV-ASPAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKTRTERLNQYQA--  128 (275)
Q Consensus        70 -------~~~~~~---~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~lilatG~~--~~~~~~~~~~l~~~~~--  128 (275)
                             +.+.+.   .+++. ...+...+.+    +|.++++..  +.++.||+|||..  |.+|.+.  +.+.+..  
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~  161 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRI  161 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceE
Confidence                   001110   11221 1122333322    677777755  4599999999965  6666542  1112111  


Q ss_pred             ---------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc
Q 023957          129 ---------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL  158 (275)
Q Consensus       129 ---------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  158 (275)
                                           .|.+|++++..|.  ..+++++++.|.+..
T Consensus       162 ~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~--~~ga~vt~~qRs~~~  210 (443)
T COG2072         162 LHSADWPNPEDLRGKRVLVIGAGASAVDIAPELA--EVGASVTLSQRSPPH  210 (443)
T ss_pred             EchhcCCCccccCCCeEEEECCCccHHHHHHHHH--hcCCeeEEEecCCCc
Confidence                                 8899999999998  556999999988754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.50  E-value=1.1e-13  Score=116.42  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecCeE
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEV   92 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   92 (275)
                      |||+|||||+|||.||+.|+ +|++|+|+||++..|--... .+  ..               ..++.+.   ..+.   
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~-tG--~G---------------rCN~tn~---~~~~---   56 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILI-TG--NG---------------RCNLTNL---NIDP---   56 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHH-CG--GG---------------T-EEEET---TSSG---
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceee-cC--CC---------------Ccccccc---ccch---
Confidence            79999999999999999997 79999999999987611100 00  00               0011110   0000   


Q ss_pred             EecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhcCCcchhhHHHHHhhhCCCCEEEEEeCCCcccC--cCCcchHHHH
Q 023957           93 LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKT  170 (275)
Q Consensus        93 ~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~  170 (275)
                           ..+..     ..+..+.+..   ..+..+.     .-++...+.  ..|.... .....++.|  .....+.+.+
T Consensus        57 -----~~~~~-----~~~~~~~f~~---~~l~~f~-----~~d~~~ff~--~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L  115 (409)
T PF03486_consen   57 -----SEFLS-----GYGRNPKFLK---SALKRFS-----PEDLIAFFE--ELGVPTK-IEEDGRVFPKSDKASSVVDAL  115 (409)
T ss_dssp             -----GGEEC-----S-TBTTTCTH---HHHHHS------HHHHHHHHH--HTT--EE-E-STTEEEETT--HHHHHHHH
T ss_pred             -----hhHhh-----hcccchHHHH---HHHhcCC-----HHHHHHHHH--hcCCeEE-EcCCCEECCCCCcHHHHHHHH
Confidence                 00100     1122222111   2222221     011111222  1232222 223333333  2234678889


Q ss_pred             HHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          171 RDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       171 ~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+++.|++++++++|.+++.+++. +.|.++++..+.||.||+|+|-.+.
T Consensus       116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY  167 (409)
T ss_dssp             HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred             HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence            99999999999999999999876666 6788877788999999999996653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=6e-13  Score=112.49  Aligned_cols=201  Identities=20%  Similarity=0.297  Sum_probs=109.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc----------------------ccCCcccccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----------------------MVEPSFGKRS--   66 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~----------------------~~~~~~~~~~--   66 (275)
                      +.++|+|||||+|||++|+.|. .|++++++||...+|+.|.-...                      ..+..+..+.  
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            4579999999999999999998 69999999999999987753310                      1111111110  


Q ss_pred             -------ccccc-cccc------ccEEEEeeeeE---ee-cC-eEEecCC----eEEeCCEEEEccCCC--CCCCchHHH
Q 023957           67 -------VINHT-DYLV------NGRIVASPAIN---IT-EN-EVLTAEG----RRVVYDYLVIATGHK--DPVPKTRTE  121 (275)
Q Consensus        67 -------~~~~~-~~~~------~~~~~~~~~~~---~~-~~-~v~~~~~----~~~~~~~lilatG~~--~~~~~~~~~  121 (275)
                             ...+. .|..      .+++ ..++..   .+ .. .+.+.+.    ...-+|.|++|||..  |.+|.++..
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence                   00000 0111      1111 111222   22 12 3444332    466799999999987  777765432


Q ss_pred             HHHHHhc-----------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCC
Q 023957          122 RLNQYQA-----------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK  178 (275)
Q Consensus       122 ~l~~~~~-----------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  178 (275)
                      .++.+.+                       +|.+|.+++..+.  .....+.+..+ ........+       ..+ ..+
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~--~~ak~v~~~~~-~~~~~~~~~-------~~~-~~~  232 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLL--RVAKEVHLSVV-SPKVHVEPP-------EIL-GEN  232 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHH--HhccCcceeee-ccccccccc-------cee-ecc
Confidence            2333332                       7778888887766  33444444332 100000000       000 012


Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccc
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  229 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~  229 (275)
                      +-.+..  |+.+.+++   .+.+.++....+|.+|+|+|+.-..+++....
T Consensus       233 ~~~~~~--i~~~~e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  233 LWQVPS--IKSFTEDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             eEEccc--cccccCcc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            222111  33333221   24456667889999999999987777766554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.40  E-value=1.2e-12  Score=109.42  Aligned_cols=200  Identities=18%  Similarity=0.158  Sum_probs=112.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccc-cccccCCcccccccccccccccccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (275)
                      +++||+|||||+.|+++|++|+ .  +++|+|+||...++...+. .++.+...+....-.-..++..          ..
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~----------~g   71 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCV----------AG   71 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHH----------HH
Confidence            4589999999999999999998 3  4999999999988744322 1121111111000000000000          00


Q ss_pred             ecC--eEEec-CCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc----CCcc--hhhHHHHHhhhCCCCE---E-EEEeC
Q 023957           88 TEN--EVLTA-EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----GGPT--GVELAGEIAVDFPEKK---V-TLVHK  154 (275)
Q Consensus        88 ~~~--~v~~~-~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~----~g~~--~~~~a~~l~~~~~~~~---v-~~~~~  154 (275)
                      +..  .+... .-......++++|+|..      +.+.++....    .+.-  -..-...+....|...   + .+..+
T Consensus        72 ~~~~~~~~kq~~~~f~~~g~l~vA~~e~------e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p  145 (429)
T COG0579          72 NINEFAICKQLGIPFINCGKLSVATGEE------EVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP  145 (429)
T ss_pred             HHHHHHHHHHhCCcccccCeEEEEEChH------HHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC
Confidence            000  00000 01133457899998865      1233333322    1111  0011122222223221   1 12222


Q ss_pred             CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcE-EeecEEEEcCCCCCCchhhccccc
Q 023957          155 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ...+..  ...+...+.+.+.++|+++.+|++|+.|+..++ ...+.+++|++ ++|+.||.|+|... ..+++..+.
T Consensus       146 ~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~  220 (429)
T COG0579         146 SGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI  220 (429)
T ss_pred             CCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence            222111  124677888888889999999999999999887 45677888876 99999999999875 566666654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.40  E-value=1.5e-12  Score=109.17  Aligned_cols=65  Identities=25%  Similarity=0.166  Sum_probs=51.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ..+.+.+.+.+++.|++++.+++|+++..+++.+. |.+.+|+ +.+|.||+|+|... ..++...+.
T Consensus       147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~~  212 (358)
T PF01266_consen  147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTTT
T ss_pred             cchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeecccc
Confidence            36788888889999999999999999998888877 9999998 99999999999875 345555443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.38  E-value=1e-12  Score=101.37  Aligned_cols=139  Identities=28%  Similarity=0.415  Sum_probs=73.9

Q ss_pred             EEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCccccccccccc---cCCccc-------c------c---------cccc
Q 023957           17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRAM---VEPSFG-------K------R---------SVIN   69 (275)
Q Consensus        17 vIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~~~~~---~~~~~~-------~------~---------~~~~   69 (275)
                      +||||||+||++|.+|. .|.+ ++|||+++.+|..|......   ..+...       .      .         ....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            79999999999999998 6998 99999999988777532111   010000       0      0         0000


Q ss_pred             ---cccccc------ccEEE-EeeeeEeecC----eEEecCCeEEeCCEEEEccCC--CCCCCchHH-H--------HH-
Q 023957           70 ---HTDYLV------NGRIV-ASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-E--------RL-  123 (275)
Q Consensus        70 ---~~~~~~------~~~~~-~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~--~~~~~~~~~-~--------~l-  123 (275)
                         ..+++.      +.++. ..++..+...    .+.+.++..+.+++||+|||.  .|..|.++. .        .+ 
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~  160 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR  160 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence               000110      22222 2333444321    678877878899999999996  466655432 0        00 


Q ss_pred             --HHHhc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCc
Q 023957          124 --NQYQA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSR  157 (275)
Q Consensus       124 --~~~~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  157 (275)
                        ..+..       +|.+|++++..|.  ..+.+++++.|.+.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~--~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALA--KAGKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHT--TTCSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHH--hhCCEEEEEecCCC
Confidence              00111       8889999999998  55789999998864

...

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.38  E-value=1.1e-11  Score=106.28  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+++.+.....+|.++.||.||.|+|..
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            4666777788889999999999999876655544444567789999999999975

>PRK06847 hypothetical protein; Provisional

Probab=99.36  E-value=2.8e-11  Score=102.33  Aligned_cols=59  Identities=22%  Similarity=0.101  Sum_probs=50.3

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      ..+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence            35677788888888999999999999987777777888899999999999999987643

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.34  E-value=2e-11  Score=103.75  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=50.1

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT  228 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~  228 (275)
                      ..+.+.+.+.+++.|++++.+++|..++..++.+.+.+.+| ++.+|.||+|+|... ..+++..
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s-~~l~~~~  211 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS-DRLAKMA  211 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch-HHHHHHh
Confidence            45778888888999999999999999987666666777766 699999999999875 3344433

>PRK10015 oxidoreductase; Provisional

Probab=99.34  E-value=2.5e-11  Score=103.89  Aligned_cols=56  Identities=14%  Similarity=0.056  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.++.|+.+..+++.+.....++.++.||.||.|.|...
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence            46667778888899999999999998765554443334456799999999999643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.33  E-value=3e-11  Score=102.47  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~   48 (275)
                      ..++|+||||||||++||.+|.  .|++|+|||+.+..+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            3578999999999999998764  599999999999887

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.33  E-value=5.8e-11  Score=100.56  Aligned_cols=63  Identities=21%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  229 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~  229 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|... ..+....+
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g  208 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLG  208 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhcc
Confidence            5677788888889999999999999987766667777666 699999999999764 34444433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.31  E-value=4.5e-11  Score=101.53  Aligned_cols=56  Identities=13%  Similarity=0.007  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+..++.|.+++.++.++.+..+++...+.. .++.++.++.||.|.|...
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence            4667788888999999999999999998876665443 3346899999999999654

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.30  E-value=1.6e-11  Score=97.31  Aligned_cols=38  Identities=21%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+||+||||||+||+||++|+ .|++|+|+||+..+|
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G   57 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG   57 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            34689999999999999999998 699999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.29  E-value=4.3e-11  Score=101.80  Aligned_cols=57  Identities=14%  Similarity=0.043  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            567778888888999999999999998877777788888889999999999998763

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.28  E-value=2.1e-11  Score=105.30  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=49.8

Q ss_pred             chHHHHHHHHHh----CC--CEEEcCceeeeecCC-CCCceEEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957          165 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       165 ~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      .+...+.+.+++    .|  ++++++++|++++.. ++.+.|.+.+| ++.||.||+|+|... ..+++..++
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi  282 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY  282 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence            467778888888    77  889999999999876 44456777777 599999999999775 456665554

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.27  E-value=7.6e-11  Score=93.45  Aligned_cols=194  Identities=15%  Similarity=0.222  Sum_probs=103.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc--cccccccccCCccccccccc-----ccccccccEEEEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI--TWASLRAMVEPSFGKRSVIN-----HTDYLVNGRIVAS   82 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~   82 (275)
                      .+..||+|||||+.|+++|++|+ +|.+++++|+.+....  +.......+...+.+.....     +..|.        
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~--------   76 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWR--------   76 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHH--------
Confidence            45689999999999999999998 6999999999875431  11222222222222211110     11111        


Q ss_pred             eeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc--CCcchhhHHHHHhhhCCC-CE-----EEEEeC
Q 023957           83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--GGPTGVELAGEIAVDFPE-KK-----VTLVHK  154 (275)
Q Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~--~g~~~~~~a~~l~~~~~~-~~-----v~~~~~  154 (275)
                              +.....+..+......+-.|...+   ...+.+....+  +-.-.+....++++.+++ .+     .-++..
T Consensus        77 --------~~~~~~g~~~~~~t~~~~~~~~e~---~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~  145 (399)
T KOG2820|consen   77 --------NLPEESGVKLHCGTGLLISGDPER---QRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNE  145 (399)
T ss_pred             --------hChhhhceeecccceeeecCcHHH---HHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccc
Confidence                    001111222222222222221100   01111111111  000112223455555553 11     111111


Q ss_pred             CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeec---CCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhc
Q 023957          155 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS---VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  226 (275)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~---~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  226 (275)
                      ...+  .........++.++++.|+.++.+..|+.++   +++..+.|.+.+|..+.++.+|+++|.+-+ .+++
T Consensus       146 ~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~  217 (399)
T KOG2820|consen  146 SGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP  217 (399)
T ss_pred             cccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence            1111  1123456778888999999999999998876   334466788999999999999999998753 4444

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.27  E-value=8.8e-11  Score=100.03  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.+.+ ++++.++.+++++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            46667777776664 9999999999998877777888888988999999999997653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.27  E-value=1.6e-10  Score=91.90  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+||+||||||||++||++|+ .|++|+|+|++..++
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G   61 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG   61 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            34689999999999999999998 699999999988765

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.25  E-value=3.4e-10  Score=91.15  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~   48 (275)
                      +...+|+|||+||||+.+|..|-   .+++|+|+|+.+...
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            34569999999999999998874   379999999998654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.25  E-value=9.3e-11  Score=99.61  Aligned_cols=55  Identities=13%  Similarity=0.119  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.+ +. +.+++|.+++.+++.+.+.+++|+++.+|.||.|.|..+
T Consensus       112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            46677777777764 55 789999999877777788888888999999999999865

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.23  E-value=9e-11  Score=100.22  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++|+.++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            577778888888899999999999998877777788888989999999999998753

>PRK07190 hypothetical protein; Provisional

Probab=99.23  E-value=3.1e-10  Score=98.62  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      +.+.+.+.+++.|++++.+++|++++.+++.+.+.+.+|+++.|+.||.|.|...
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            4556677788889999999999999988777777777888899999999999864

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.23  E-value=2.2e-10  Score=96.96  Aligned_cols=55  Identities=18%  Similarity=0.063  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+.+.|++++.+++|++++.+++.+.+.+.+| .+.+|.||+|+|...
T Consensus       150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence            4566666777788999999999999988776677777777 699999999999764

>PRK08013 oxidoreductase; Provisional

Probab=99.23  E-value=2.2e-10  Score=97.65  Aligned_cols=56  Identities=7%  Similarity=-0.054  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|+||-|.|..+
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            4666777777765 7999999999999887777788888999999999999999775

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.23  E-value=1.2e-10  Score=98.76  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcC-CCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.++++ +|+++.||+||-|-|...
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S  162 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS  162 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence            57788888887766 999999999999998888778887 999999999999999764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.22  E-value=1e-10  Score=100.05  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC-----cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.++     .++.+|.||+|+|...
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            4566777888899999999999999987666555543332     3699999999999874

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.22  E-value=3e-10  Score=97.08  Aligned_cols=57  Identities=12%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.++++.+++.+++.+.+.+++|+++.+|+||.|.|..+.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            456677777888899999999999998877777888889988999999999998653

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.22  E-value=3.2e-10  Score=97.24  Aligned_cols=55  Identities=20%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.+++.+. +.+.++ ++.+|.||+|+|...
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            5677788888889999999999999987665543 555544 699999999999865

>PLN02463 lycopene beta cyclase

Probab=99.21  E-value=5e-10  Score=95.89  Aligned_cols=55  Identities=20%  Similarity=0.147  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.|++++ ..+|++++..++...|.+++|++++||.||.|+|..+
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            466777777778899996 5789999887777788889998999999999999765

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.21  E-value=6.2e-10  Score=95.16  Aligned_cols=55  Identities=15%  Similarity=-0.102  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.. ++.+ .+.+.+| .+.++.||+|+|-..
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            35566778888899999999999999643 3333 4667777 599999988887653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.21  E-value=1.4e-09  Score=91.28  Aligned_cols=104  Identities=17%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCC--cEEeecEEEEcCCCCCCchhhccc------cccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKDT------ILKDSL  234 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~------~~~~~~  234 (275)
                      ..+.+.+.+.+++.|++++.+++|.++..+++.+. +.+.++  ..+.+|.+|+|+|..-...++...      -+++++
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v  342 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDV  342 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCc
Confidence            35777888999999999999999999887766555 554555  479999999999988223332221      112222


Q ss_pred             ----CCCC---------------ceEeCCCccc----cCCCCeEEeccccCCCCCC
Q 023957          235 ----DTHG---------------MLMVDENLRV----KGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       235 ----~~~g---------------~i~v~~~~~~----~~~~~v~a~Gd~~~~~~~~  267 (275)
                          +.+.               .+.+|.++|.    ...+|+|++|-+...+++.
T Consensus       343 ~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~  398 (419)
T TIGR03378       343 LQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI  398 (419)
T ss_pred             CCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH
Confidence                1111               2678888883    1378999999998877754

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.20  E-value=1.1e-10  Score=99.26  Aligned_cols=57  Identities=11%  Similarity=0.006  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            3566677767666 99999999999998777777788888888999999999998763

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.20  E-value=1.8e-10  Score=99.31  Aligned_cols=99  Identities=18%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCC-CCCceEE---cCCCc--EEeecEEEEcCCCCCCchhhcccccc----cc
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTILK----DS  233 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~----~~  233 (275)
                      .+.+.+.+.+.+ .|++++.+++|+.++.. ++.+.+.   +.+++  ++.+|.||+|+|... ..+++..+..    ..
T Consensus       185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi~~~~~~~  263 (497)
T PRK13339        185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGIPESKHLG  263 (497)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCCCccCCCc
Confidence            466777777754 58999999999999866 5555554   34452  689999999999886 5666665542    11


Q ss_pred             cC-CCC-ceEeCCCccccCCC-CeEEeccccCCC
Q 023957          234 LD-THG-MLMVDENLRVKGQK-NIFAIGDITDIR  264 (275)
Q Consensus       234 ~~-~~g-~i~v~~~~~~~~~~-~v~a~Gd~~~~~  264 (275)
                      .- -+| ++.++..-...+++ .||-.+|.-.+|
T Consensus       264 i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~  297 (497)
T PRK13339        264 GFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPP  297 (497)
T ss_pred             eEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCC
Confidence            11 134 23343321111233 688888754433

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.19  E-value=7.9e-10  Score=93.93  Aligned_cols=55  Identities=15%  Similarity=0.002  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.| ++++ +..+++++..++.+.+.+.+|+++.+|.||.|.|...
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            56777878788887 9998 8899999877777778888888899999999999865

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.19  E-value=7.2e-10  Score=93.40  Aligned_cols=51  Identities=27%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+.+. |++++.+++|..++..    .+.+.+|+ +.||.||+|+|...
T Consensus       146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s  197 (365)
T TIGR03364       146 EAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCCh
Confidence            4667777777665 9999999999999642    57777775 78999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.18  E-value=4e-10  Score=97.78  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCC-ceEEc---CCCc--EEeecEEEEcCCCCCCchhhccccc
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      .+.+.+.+.+++.| ++++.+++|+.++..++. +.+.+   .+|+  ++.|+.||+|+|... ..+++..++
T Consensus       184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi  255 (494)
T PRK05257        184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI  255 (494)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            56788888888876 899999999999875443 55543   3453  689999999999875 556655544

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.18  E-value=6.1e-10  Score=90.90  Aligned_cols=56  Identities=11%  Similarity=0.108  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC-CcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++++.+..+++.+.+.+.+ +.++++|.||.|+|...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            466778888888999999999999987766665555443 45799999999999764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK09126 hypothetical protein; Provisional

Probab=99.18  E-value=3.3e-10  Score=96.35  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             hHHHHHHHH-HhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.+ +..|++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence            444454444 44699999999999998777777788888989999999999998654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.18  E-value=6.7e-10  Score=96.12  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCC--C--C-CceEEcC-CCc-----EEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--E--G-SDTYLTS-TGD-----TINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~--~-~~~v~~~-~g~-----~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.++++++|++++++++|+++..+  +  + ...+... +|+     ..+.|.||+++|...
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            568889999999999999999999998864  2  1 1224443 232     457899999999654

>PRK05868 hypothetical protein; Validated

Probab=99.17  E-value=2.7e-10  Score=96.01  Aligned_cols=55  Identities=7%  Similarity=-0.095  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.+ ..|++++.+++|+.++.+++.+.+.+++|+++++|+||-|-|....
T Consensus       107 L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        107 LVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             HHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            444443332 3689999999999998777778899999999999999999997653

>TIGR00275 flavoprotein, HI0933 family

Probab=99.16  E-value=7.4e-10  Score=94.14  Aligned_cols=57  Identities=19%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ...+.+.+.+.+++.|++++.++.|+++..+++.+.+.+ +++++.+|.||+|+|...
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            346788888889999999999999999977666666666 456799999999999654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.16  E-value=5.8e-10  Score=96.68  Aligned_cols=53  Identities=13%  Similarity=-0.009  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+...+.+.+++.|++|+.+++|+.++. ++.+.+.+.+| ++.||.||+|+|..
T Consensus       184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       184 LLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence            5678888889999999999999999975 34456777777 59999999999955

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.15  E-value=1.3e-10  Score=102.48  Aligned_cols=65  Identities=11%  Similarity=-0.138  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc---CCC--cEEeecEEEEcCCCCCCchhhccccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      .+...+...++++|++++.+++|+.+..+++.+ .+.+   .++  .++.||.||+|+|... ..+....+.
T Consensus       150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~~~g~  220 (546)
T PRK11101        150 RLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAEYADL  220 (546)
T ss_pred             HHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHHhcCC
Confidence            466667777888999999999999997765543 2443   223  3799999999999875 344443343

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.14  E-value=6.7e-10  Score=94.17  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=48.2

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+ .|++++.+++|++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            577778888877 49999999999999877777788888888899999999999764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06184 hypothetical protein; Provisional

Probab=99.14  E-value=4.6e-10  Score=98.46  Aligned_cols=56  Identities=14%  Similarity=0.038  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc---CCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.++++++++.+++.+.+.+   .+++++.+|.||.|.|...
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS  168 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence            3556777778888999999999999988777776665   5667899999999999775

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.13  E-value=5.9e-10  Score=96.97  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=47.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+.+++.+.+++.|++|+++++|++|..+++ ...+...+|+.+++|.||.....
T Consensus       225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            5888999999999999999999999998776 45677777878999999999876

>PRK07588 hypothetical protein; Provisional

Probab=99.13  E-value=8.4e-10  Score=93.86  Aligned_cols=56  Identities=7%  Similarity=-0.034  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+. .+++++.+++|++++.+++.+.+.+++|+.+++|.||.|.|..+.
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            34555555454 479999999999999887778888999999999999999997654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.12  E-value=6.4e-10  Score=94.39  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.| ++++.+++|++++..++.+.+.+++|+++.+|.||.|.|...
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            46777888888887 999999999999887777788888998999999999999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06834 hypothetical protein; Provisional

Probab=99.12  E-value=1.6e-09  Score=94.26  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++++.++.+++.+.+.+.+|+++.+|+||.|.|..+.
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            456667788888899999999999999887777888888888999999999998764

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.12  E-value=3e-09  Score=91.20  Aligned_cols=57  Identities=12%  Similarity=0.059  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCC-C--cEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+ +  .+++||+||.|.|..+.
T Consensus       122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence            3556666666664 79999999999998777777777653 2  36999999999997653

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.12  E-value=5.8e-10  Score=97.61  Aligned_cols=57  Identities=12%  Similarity=-0.074  Sum_probs=44.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC----cEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+...+++.|++++.+++|+++..+++.+.+.+.++    .++.++.||.|+|...
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            34566666778889999999999999987766556665544    2689999999999875

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.11  E-value=5.1e-10  Score=94.92  Aligned_cols=57  Identities=11%  Similarity=0.011  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      +...+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.+|+||.|.|..+..
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence            44455555544 4799999999999988877788899999999999999999987643

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.11  E-value=1.1e-10  Score=105.44  Aligned_cols=55  Identities=11%  Similarity=0.049  Sum_probs=47.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++ |++++.+++|+++...++.+.+.+.+|..+.+|.||+|+|...
T Consensus       409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        409 ELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            577888888888 9999999999999877666778788887788999999999865

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.11  E-value=2.1e-09  Score=91.54  Aligned_cols=55  Identities=18%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      +.+.+.+.+.+ .|++++.+++++++...++.+.+.+++|..+.+|.||.|.|...
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            45566666655 47999999999999877777778888888899999999999875

>PRK06753 hypothetical protein; Provisional

Probab=99.10  E-value=1.6e-09  Score=91.65  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.++  +.+++.++++++++.+++.+.+++++|+++.+|+||.|.|..+.
T Consensus       100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        100 LIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             HHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            4444544433  46899999999998877788888999999999999999997643

>PRK07233 hypothetical protein; Provisional

Probab=99.09  E-value=1.2e-09  Score=94.17  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+.+.+.+.+++.|++|+++++|++|+.+++.+.+...+++.+.+|.||+|++.
T Consensus       199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence            477888888888999999999999998777666555567778999999999885

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.09  E-value=2.7e-09  Score=91.05  Aligned_cols=57  Identities=7%  Similarity=-0.143  Sum_probs=48.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ++.+.+.+.+...|.+++++++|++|..+++  ...|.+.+|+++.|+.||....+.|.
T Consensus       233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            5777888888889999999999999976643  25688889999999999999888875

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.08  E-value=4.1e-10  Score=97.56  Aligned_cols=66  Identities=18%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEc---CCC--cEEeecEEEEcCCCCCCchhhccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ..+...+.+.+++.|++++.+++|++++.+++ .+.+.+   .+|  .++.+|.||+|+|... ..+++..++
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi  249 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI  249 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence            35788888888889999999999999987543 444442   334  2689999999999875 456555543

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK07045 putative monooxygenase; Reviewed

Probab=99.08  E-value=1.9e-09  Score=91.64  Aligned_cols=57  Identities=9%  Similarity=0.022  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc--eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.. .|++++.+++++.++.+++..  .+++++|+++.+|.||.|.|....
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            355666666653 579999999999998765543  577888999999999999997753

>PRK08244 hypothetical protein; Provisional

Probab=99.08  E-value=1.2e-09  Score=95.67  Aligned_cols=57  Identities=12%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC--CC-cEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS--TG-DTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.++++++++.+++.+.+.+.  +| +++++|.||.|.|..+.
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            45666777788889999999999999877776666543  45 47999999999998753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.06  E-value=4.8e-10  Score=93.89  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC---CCc--EEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|+++..++++..++.+.+...+.+.   +|+  +++||+||-|.|....
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence            46777888888889999999999999877766554432   343  6899999999998753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.06  E-value=2.6e-09  Score=91.26  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      +...+.+.+.+ .|++++.+++|+.++.+++.+.+.+++|+++.||+||.|.|..+
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            44556666655 47999999999999887777788889999999999999999764

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.05  E-value=5.5e-09  Score=91.52  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC---Cc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|+.+..+++.+.+.+.+   |+  ++.++.||+|+|...
T Consensus       156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        156 RLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            455666667788999999999999997766555565443   43  689999999999875

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.05  E-value=5.2e-09  Score=91.66  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEE--cCCC--cEEeecEEEEcCC-CCCCchhhcc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL--TSTG--DTINADCHFLCTG-KPVGSDWLKD  227 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~--~~~g--~~~~~d~vv~a~G-~~~~~~~~~~  227 (275)
                      .+.+.+.+.+++.|++++++++++++..+++.+ .+.  ..++  ..+.++.||+|+| +..+.+++..
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            467778888889999999999999998655433 233  3343  3689999999998 6666555443

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.05  E-value=1.2e-09  Score=92.36  Aligned_cols=56  Identities=5%  Similarity=0.007  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.+.+ ++++.+++++++..+++.+.+.+.++ ++.+|+||.|.|..+.
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            56777777777765 99999999999987777777888776 7999999999997654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.05  E-value=1.4e-09  Score=94.25  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.6

Q ss_pred             EEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       180 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +|+++++|++|+..++.+.+.+.+|+++.||.||+|+..
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            899999999999887777788888989999999999773

>PRK07236 hypothetical protein; Provisional

Probab=99.04  E-value=4.6e-09  Score=89.20  Aligned_cols=44  Identities=18%  Similarity=0.005  Sum_probs=38.8

Q ss_pred             CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          178 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       178 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +++++.+++|++++.+++.+.+.+++|+++.+|.||.|-|..+.
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            57899999999999887788888999999999999999997653

>PRK09897 hypothetical protein; Provisional

Probab=99.04  E-value=7.7e-09  Score=90.17  Aligned_cols=55  Identities=16%  Similarity=-0.010  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhCC--CEEEcCceeeeecCCCCCceEEcCC-CcEEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.+.|  +.++.+++|+.++..++.+.+.+.+ |..+.+|.||+|+|..+
T Consensus       109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        109 QFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence            3444455556666  7888899999998877777777755 46799999999999754

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.04  E-value=5.2e-09  Score=91.06  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEc--CCC--cEEeecEEEEcCCC-CCCchhh
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLT--STG--DTINADCHFLCTGK-PVGSDWL  225 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~--~~g--~~~~~d~vv~a~G~-~~~~~~~  225 (275)
                      ..+...+.+.+++.|++++.+++++++..+++.+. +..  .++  ..+.++.||+|+|- ..+.+++
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence            35677788888899999999999999886554433 443  233  36889999999984 3343333

>PRK06996 hypothetical protein; Provisional

Probab=99.03  E-value=4.1e-09  Score=89.83  Aligned_cols=54  Identities=11%  Similarity=-0.035  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC---cEEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~  218 (275)
                      .+.+.+.+.+++.|+++..++++++++.+++.+.+.+.++   +++.||+||-|.|.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            5778888888889999999999999988777778877754   58999999999995

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.03  E-value=2.6e-09  Score=90.27  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      +.+++.+.+.   .+|+++++|+.|..+....++++.+|.++.+|.||++....
T Consensus       217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~  267 (444)
T COG1232         217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP  267 (444)
T ss_pred             HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH
Confidence            4444444444   44899999999998877788999999999999999997643

>PRK06185 hypothetical protein; Provisional

Probab=99.03  E-value=4.8e-09  Score=89.75  Aligned_cols=56  Identities=18%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc---eEEcCCCc-EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+ .|++++.++.+.++..+++.+   .+...+|+ ++.+|.||.|.|...
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS  169 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence            456666666665 489999999999997766543   23445664 799999999999775

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.02  E-value=6.6e-09  Score=91.91  Aligned_cols=57  Identities=21%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcC--CC--cEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.+. |++++.++++++++.+++.+.+.++  +|  +++.+|.||.|.|....
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            3455566666664 8999999999999988877777665  56  47999999999998653

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.02  E-value=3.3e-09  Score=89.47  Aligned_cols=55  Identities=15%  Similarity=0.034  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+. .+..++.+..|.+|+..++...+++.+|+++.|+.||-|.|..+
T Consensus        88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            45666777777 44456778999999988877778899999999999999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.02  E-value=5.6e-09  Score=89.84  Aligned_cols=38  Identities=39%  Similarity=0.524  Sum_probs=33.9

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |+.+++||+||||||||++||+.|+ .|++|+|+|+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            5566799999999999999999998 6999999999753

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.02  E-value=5.4e-09  Score=86.79  Aligned_cols=49  Identities=12%  Similarity=-0.008  Sum_probs=40.6

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .....++.+-.|.++.+|.+|.++++++.|++.+..+..+|.+|+++..
T Consensus       212 a~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl  260 (450)
T COG1231         212 AEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPL  260 (450)
T ss_pred             HHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCH
Confidence            3344455688899999999999999999999988667999999999763

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.01  E-value=5.7e-09  Score=88.63  Aligned_cols=55  Identities=15%  Similarity=0.048  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC------C--cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.|++++.. .++++..+++.+.+.+.+      |  .++.+|.||.|.|..+
T Consensus        93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            45667777777889999765 588887777666666543      2  3799999999999754

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.01  E-value=2.7e-09  Score=91.02  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEc---CCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+ .+++++.+++|+.++.+++.+.+++   .+++++++|+||-|-|...
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS  167 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence            466777777765 4899999999999988777776665   3445799999999999765

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.01  E-value=3.3e-09  Score=91.59  Aligned_cols=63  Identities=13%  Similarity=0.062  Sum_probs=45.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEE--cCCCc--EEeecEEEEcCC-CCCCchhhc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYL--TSTGD--TINADCHFLCTG-KPVGSDWLK  226 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~--~~~g~--~~~~d~vv~a~G-~~~~~~~~~  226 (275)
                      ..+.+.+.+.+++.|++++.+++++++..+++ .+ .++  ..+++  .+.++.||+|+| +..|.+++.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            35777888888999999999999999986532 22 233  33443  478999999999 444444443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.00  E-value=1.6e-09  Score=91.94  Aligned_cols=55  Identities=18%  Similarity=-0.026  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.| ..+..++.+..++...+...+.+.+|+ +.+|.||+|+|...
T Consensus       157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         157 LLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            57788888899999 566668999998864234567788887 99999999999764

>PRK06126 hypothetical protein; Provisional

Probab=98.99  E-value=1.6e-08  Score=89.70  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEc---CCCc--EEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~  220 (275)
                      +.+.+.+.+++ .|++++.++++++++.+++.+.+.+   .+|+  ++.+|.||.|.|..+
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence            45566666665 4899999999999988776665554   3453  689999999999765

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.99  E-value=3.6e-09  Score=92.93  Aligned_cols=55  Identities=11%  Similarity=0.042  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.+++.|++|+.+++|++|..+++. +.|.+.+|+++.+|.||++++..
T Consensus       220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            46778888889999999999999999876654 46788888889999999998853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.99  E-value=3.2e-09  Score=91.11  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~   49 (275)
                      ..+||||||+|.|||+||+.++.|.+|+|+||.+..+.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence            45899999999999999999878999999999987654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.99  E-value=2.9e-09  Score=92.57  Aligned_cols=50  Identities=20%  Similarity=0.114  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  217 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  217 (275)
                      +.+.+.+.+++  .+|.++++|+.|+..++.+.+.+.+|+.+.+|.||+++.
T Consensus       228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence            44555555533  689999999999988777778888888899999999986

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.98  E-value=1.3e-08  Score=84.22  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             CCEEEEEeC-CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957          146 EKKVTLVHK-GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSD  223 (275)
Q Consensus       146 ~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~  223 (275)
                      ++...++.. .+++.....+.+.+.+.+.++++|++++++++|.+++..++. ..+.+++|.++++|.||+|+|... .+
T Consensus       154 ~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~d  232 (486)
T COG2509         154 GAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RD  232 (486)
T ss_pred             CCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HH
Confidence            444444332 344555666788999999999999999999999999887764 457889999999999999999876 45


Q ss_pred             hhcc
Q 023957          224 WLKD  227 (275)
Q Consensus       224 ~~~~  227 (275)
                      |+..
T Consensus       233 w~~~  236 (486)
T COG2509         233 WFEM  236 (486)
T ss_pred             HHHH
Confidence            5543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.98  E-value=1.2e-08  Score=81.65  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcccccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASL   54 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~~~~~~   54 (275)
                      .+.+|+|||+|++||+||+.|.+.++||++|.+...|++...+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence            4579999999999999999999999999999999999776544

>PLN02697 lycopene epsilon cyclase

Probab=98.98  E-value=6.8e-09  Score=90.48  Aligned_cols=55  Identities=11%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.|+++ .++.|+.+..+++... +.+.+|.++.|+.||.|+|..+
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            46677777777889998 5778999987665554 4567788899999999999876

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.97  E-value=9.2e-09  Score=87.44  Aligned_cols=55  Identities=11%  Similarity=-0.055  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.|++++ ...+..++.. ++...+.+.+|+++.|+.||.|+|..+
T Consensus        86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            466777777777899886 5578888766 445667788888899999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.96  E-value=9.2e-09  Score=86.13  Aligned_cols=33  Identities=36%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             eEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCc
Q 023957           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~   47 (275)
                      ||+|||+|.|||++|+.|.+.++|+|+.|.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            899999999999999999988999999998763

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.96  E-value=1.6e-08  Score=86.02  Aligned_cols=56  Identities=7%  Similarity=-0.042  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecC-CCCCceEEc-CCCc--EEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+...+.|++++.++++++++. +++...+.+ .+|+  ++.+|+||-|-|....
T Consensus       105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~  164 (392)
T PRK08243        105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV  164 (392)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence            455566666678999999999998876 455556666 4664  6899999999997653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.95  E-value=4e-09  Score=68.34  Aligned_cols=74  Identities=28%  Similarity=0.372  Sum_probs=67.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g  204 (275)
                      +|.+|+|+|..+.  ..+.+++++++.+.+.+.+++++...+.+.+++.||++++++.+++++.+++.+.|+++||
T Consensus         7 gG~ig~E~A~~l~--~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen    7 GGFIGIELAEALA--ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             SSHHHHHHHHHHH--HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             cCHHHHHHHHHHH--HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            7889999999998  5789999999999999889999999999999999999999999999998877666877776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.95  E-value=1.8e-08  Score=86.96  Aligned_cols=57  Identities=11%  Similarity=0.039  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCC---CEEEcCceeeeecC-------CCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKK---VDVKLGERVNLDSV-------SEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~g---v~i~~~~~v~~i~~-------~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.+   ++++.++++.+++.       +++.+.+.+.+|+++.||+||.|-|....
T Consensus       118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            45666667776654   99999999999964       23466788889999999999999998753

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02730 carot_isom carotene isomerase

Probab=98.94  E-value=8.5e-09  Score=90.27  Aligned_cols=56  Identities=13%  Similarity=0.044  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ..+.+.+.+.++++|++|+.+++|++|..+++ ...+.+.+|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            35788888999999999999999999976654 345778889889999999999864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.94  E-value=1.5e-08  Score=88.24  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+|+++++|+.|+..++.+.+.+++|+++.||.||+|+..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence            7899999999999887777888888888999999999874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02268 probable polyamine oxidase

Probab=98.93  E-value=1.7e-08  Score=87.15  Aligned_cols=48  Identities=21%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +.+.+. .+++|+++++|++|...++.+.|++.+|+++.+|.||+|+..
T Consensus       203 l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        203 VINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             HHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            333343 477899999999999888888888888988999999999754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.93  E-value=7.7e-09  Score=79.94  Aligned_cols=50  Identities=22%  Similarity=0.192  Sum_probs=39.3

Q ss_pred             hCCCEEEcCceeeeecCCCCCceEEcCCC-cEEeecEEEEcCCCCCCchhh
Q 023957          176 SKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWL  225 (275)
Q Consensus       176 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~  225 (275)
                      ....+++++++|+++...++.+.+.+++| +...+|.||++...-....++
T Consensus       115 AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL  165 (331)
T COG3380         115 ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL  165 (331)
T ss_pred             hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence            35788899999999998888889999766 477899999997744333444

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.93  E-value=1.3e-07  Score=79.40  Aligned_cols=36  Identities=31%  Similarity=0.562  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~---~-g~~v~vie~~~~~~   48 (275)
                      +++|+|||||++|+.+|.+|.   + ...|.|+|+.+.+|
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            479999999999999999985   2 33499999998876

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.91  E-value=1.7e-08  Score=89.52  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEc--CCCc-EEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT--STGD-TINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.+.+. +++++.++++++++.+++.+.+.+  .+|. ++.+|.||.|.|..+.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence            455666666665 799999999999988776665543  3554 6999999999998764

>PRK11445 putative oxidoreductase; Provisional

Probab=98.90  E-value=2e-08  Score=84.14  Aligned_cols=54  Identities=13%  Similarity=-0.026  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCc--EEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~  220 (275)
                      +.+.+.+. .+.|++++.++.++.++..++.+.+.+ .+|+  ++.||.||.|.|...
T Consensus       101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445        101 FDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             HHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            34444443 357899999999999987777766664 5664  689999999999754

>PLN02661 Putative thiazole synthesis

Probab=98.90  E-value=2.4e-08  Score=81.74  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~   48 (275)
                      ..+||+|||||++|++||++|+ . |++|+|+||+...|
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            3589999999999999999997 3 89999999987765

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.89  E-value=2e-09  Score=92.23  Aligned_cols=63  Identities=14%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC---Cc--EEeecEEEEcCCCCCCchhhccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLKDT  228 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~~~~~  228 (275)
                      .+.-.......++|-+++..++|+.+..+++.+.|...|   |+  ++.++.||.|+|.+. ..+++..
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~  232 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA  232 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence            455556666778999999999999999887744566544   32  689999999999986 4555544

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.89  E-value=1.2e-08  Score=89.47  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=44.3

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCC-----cEEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~  219 (275)
                      ..+.+.+.+.+++.|++|+++++|++|..+++. ..+...++     +++.+|.||+++...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            357888899999999999999999999877654 23444443     578999999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.89  E-value=1.8e-08  Score=87.48  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=40.9

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.+++.|++++.+ .+..+..+++.+ .+.. ++..+.++.||+|+|-..
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence            457788888888899999876 677776544443 3444 566799999999999654

>PRK07538 hypothetical protein; Provisional

Probab=98.88  E-value=1.9e-08  Score=86.13  Aligned_cols=56  Identities=13%  Similarity=-0.024  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHh-CC-CEEEcCceeeeecCCCCCceEEcCCC-----cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+ .| ..++.++++++++.+++.+.+.+.++     +++.+|+||-|.|...
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S  165 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS  165 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence            355666666654 46 57999999999987766555554432     4899999999999764

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.88  E-value=2.1e-08  Score=89.19  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..+||+|||+|++|++||++++ +|.+|+|+||....|...
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            4689999999999999999998 799999999999877543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.88  E-value=3e-08  Score=84.28  Aligned_cols=56  Identities=7%  Similarity=-0.057  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecC-CCCCceEEcC-CCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+.+.|+.++.+..+..+.. +++...|.+. +|+  ++++|+||-|-|...
T Consensus       104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S  163 (390)
T TIGR02360       104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG  163 (390)
T ss_pred             HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence            3455566667777999999888777643 4445567664 775  689999999999765

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.87  E-value=3e-08  Score=88.37  Aligned_cols=40  Identities=20%  Similarity=0.149  Sum_probs=34.3

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~   49 (275)
                      +...+||+|||||.|||+||++++++.+|+|+||....+.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g   41 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRS   41 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            4456899999999999999999986699999999876553

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.86  E-value=2.8e-08  Score=85.24  Aligned_cols=54  Identities=15%  Similarity=0.032  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.  +..++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|...
T Consensus       106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence            34455554442  4567889999999887777888889999999999999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.86  E-value=3.3e-09  Score=66.05  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             EEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957           18 VIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (275)
Q Consensus        18 IIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~   52 (275)
                      |||||++||++|+.|+ .|++|+|+|+++.+|+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence            8999999999999998 6999999999999885544

...

>PRK07121 hypothetical protein; Validated

Probab=98.86  E-value=2.5e-08  Score=87.29  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||||||+|.||++||++++ .|.+|+|+||....+..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~   58 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA   58 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence            3589999999999999999998 69999999999886643

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.85  E-value=5.7e-09  Score=82.33  Aligned_cols=203  Identities=13%  Similarity=0.158  Sum_probs=103.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc-ccccccccCCcccccccccccccccccEEEEeeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (275)
                      ..+|++|||||+.|++.|.+|.   ++.+|.|+|++..++-+ .+..++.+...++...-.-...+.     +.+  ..+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklC-----V~G--~~L  119 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLC-----VEG--REL  119 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhh-----hcc--HHH
Confidence            4699999999999999999985   49999999999887632 222222222211111000000000     000  000


Q ss_pred             ecCeEEecCCeEEeC---CEEEEccCCCCCCCchHHHHHHHHh-cCCcchhhHHHH--HhhhCCCCE--EEEEeCCCccc
Q 023957           88 TENEVLTAEGRRVVY---DYLVIATGHKDPVPKTRTERLNQYQ-AGGPTGVELAGE--IAVDFPEKK--VTLVHKGSRLL  159 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~---~~lilatG~~~~~~~~~~~~l~~~~-~~g~~~~~~a~~--l~~~~~~~~--v~~~~~~~~~~  159 (275)
                         .-..-+...++|   .++|+||++. .+|..  +.+.+.. ..+..++....-  +.+..|..+  ..+..+...+.
T Consensus       120 ---lY~yc~e~~IpyKk~GKLIVAt~~~-EiprL--d~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIv  193 (453)
T KOG2665|consen  120 ---LYEYCDEKKIPYKKTGKLIVATESE-EIPRL--DALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIV  193 (453)
T ss_pred             ---HHHHhhhcCCChhhcceEEEEeChh-hcchH--HHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCccee
Confidence               000012234444   5799999876 22222  2222111 122222221110  000000000  00111111111


Q ss_pred             CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-----ceEEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957          160 EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      . . ..+...+.+.++..|.++.+|-++..+..+.+.     +.|.-..++++++..+|-|+|+.. ......+++
T Consensus       194 D-~-~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sgc  266 (453)
T KOG2665|consen  194 D-W-GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSGC  266 (453)
T ss_pred             e-h-HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhCC
Confidence            1 0 123444556688899999999999999876552     233334467999999999999885 445555554

>PLN02612 phytoene desaturase

Probab=98.85  E-value=1.3e-07  Score=83.88  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+.+.+.+.+++.|++|+++++|++|+.++++  ..+.+.+|+.+.+|.||++++.
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            46788888888899999999999999875444  3366778888999999999763

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.85  E-value=1.9e-08  Score=86.28  Aligned_cols=58  Identities=22%  Similarity=0.232  Sum_probs=41.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEc---CCCc--EEeecEEEEcCCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLT---STGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~~d~vv~a~G~~~~  221 (275)
                      ..+...+.+.+++.|++|+.++.++++..+++++. +..   .+|+  .+.++.||+|+|-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            35677888899999999999999999987665443 433   4565  6789999999996553

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.84  E-value=7.3e-09  Score=86.01  Aligned_cols=97  Identities=25%  Similarity=0.342  Sum_probs=57.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEE-cCCCCccccc----------cc-------cccc---------c--------
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLI-DPKEYFEITW----------AS-------LRAM---------V--------   58 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vi-e~~~~~~~~~----------~~-------~~~~---------~--------   58 (275)
                      ||+|||||.||+.||+.++ .|.+|+|+ .+...++...          +.       +.+.         +        
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            8999999999999999998 69999999 3333322100          00       0000         0        


Q ss_pred             ------------CCcccccccccccccccccEEEEeeeeEeecC-----eEEecCCeEEeCCEEEEccCC
Q 023957           59 ------------EPSFGKRSVINHTDYLVNGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGH  111 (275)
Q Consensus        59 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~lilatG~  111 (275)
                                  +.......+.....-.+++.++..++.++...     .|.+.+|..+.++.+|+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                        00000000001111234788888888888532     677889999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.83  E-value=1.3e-08  Score=91.05  Aligned_cols=58  Identities=14%  Similarity=-0.096  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHHhCCCEEEcCceeeeecCCC--CCc-eEEc---CCCc--EEeecEEEEcCCCCC
Q 023957          163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSD-TYLT---STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~---~~g~--~~~~d~vv~a~G~~~  220 (275)
                      +..+...+.+.+++.|++++.+++|.++..++  +.+ .+..   .+++  ++.+|.||+|+|...
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            34677788888899999999999999987652  333 3333   2343  689999999999875

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.83  E-value=1.8e-08  Score=88.88  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+||+|||+|.|||+||+.++ .|.+|+|+||....+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            4589999999999999999998 699999999988765

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.81  E-value=8.4e-08  Score=81.67  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +||+||||||||++||+.|+ .|++|+|+||....
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            58999999999999999998 69999999997643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=7.3e-08  Score=85.53  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ...+||+|||+|.|||+||+.++ .|.+|+|+||.+..+.
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g   42 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS   42 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            35689999999999999999998 6999999999876543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.79  E-value=4.5e-09  Score=78.76  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..||+||||||+||+||++|+ +|.+|+|||++..+|
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G   66 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG   66 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccC
Confidence            469999999999999999998 699999999998876

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.79  E-value=2e-08  Score=87.93  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..|||+|||||+||+.||+.++ .|.+|+|+|++.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            3599999999999999999998 599999999983

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=8.9e-08  Score=85.32  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cC---CcEEEEcCCCCccc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FS---ADVTLIDPKEYFEI   49 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g---~~v~vie~~~~~~~   49 (275)
                      |+...+||+|||||.|||+||+.++ .|   .+|+|+||....+.
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence            4455689999999999999999997 56   89999999887553

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.78  E-value=5.9e-08  Score=81.13  Aligned_cols=99  Identities=11%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHhC-CCEEEcCceeeeecCCCCC-ceEEcC-----CCcEEeecEEEEcCCCCCCchhhcccccccccCCCC
Q 023957          166 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG  238 (275)
Q Consensus       166 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g  238 (275)
                      +.+.+.+.+++. |++++++++|++|+..+++ +.|...     +.+++.++.|++.+|--. ..+++++++.....-.|
T Consensus       183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gygg  261 (488)
T PF06039_consen  183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYGG  261 (488)
T ss_pred             HHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccCC
Confidence            666777777776 9999999999999988776 556542     335899999999999765 67888777632111122


Q ss_pred             ceEeCCCcccc-------CCCCeEEeccccCCCC
Q 023957          239 MLMVDENLRVK-------GQKNIFAIGDITDIRV  265 (275)
Q Consensus       239 ~i~v~~~~~~~-------~~~~v~a~Gd~~~~~~  265 (275)
                      ++.--.++++.       .+..||..-.+=.+|.
T Consensus       262 fPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPm  295 (488)
T PF06039_consen  262 FPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPM  295 (488)
T ss_pred             CcccceEEecCCHHHHHHhcceeeeeCCCCCCCc
Confidence            22222344442       1345776655433433

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.78  E-value=2.6e-07  Score=81.95  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=36.2

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      |....+||+|||+|++|++||+.++ .|.+|+||||.+..|..
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~   45 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS   45 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence            3445689999999999999999998 69999999999876643

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.78  E-value=5.3e-08  Score=77.79  Aligned_cols=42  Identities=29%  Similarity=0.406  Sum_probs=35.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCcccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASL   54 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~   54 (275)
                      +.||+|||||-.|.+.|++|+     .|++|+|+|++..+......+
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~l  132 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTML  132 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceee
Confidence            689999999999999999997     279999999998876544433

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.77  E-value=1.4e-07  Score=81.93  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-c-eEEcCCCc-----EEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTSTGD-----TINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~-----~~~~d~vv~a~G~  218 (275)
                      .+.+.+.+.+++.|++|++++.|++|...+++ + .+++.+|+     ++.||.||+++..
T Consensus       214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            46788888888899999999999999754332 3 46665554     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.77  E-value=1.4e-07  Score=84.83  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .+||+|||||.|||+||+.++ .|.+|+|+||....+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            579999999999999999998 699999999976653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.77  E-value=2.2e-07  Score=83.44  Aligned_cols=38  Identities=26%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+||+|||||.|||+||+.++ .|.+|+|+||....+
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            34589999999999999999997 699999999987654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.76  E-value=7.1e-09  Score=78.05  Aligned_cols=38  Identities=26%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ..+||+||||||+||+||++|+ .|++|++||++..+|+
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            4589999999999999999998 6999999999988773

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.75  E-value=8.6e-08  Score=84.95  Aligned_cols=38  Identities=29%  Similarity=0.454  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--Cccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--YFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--~~~~   49 (275)
                      ..+||+|||+|.|||+||+.++ .|.+|+||||.+  ..|.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG   43 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG   43 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence            4689999999999999999998 699999999998  5554

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=8.4e-08  Score=85.64  Aligned_cols=56  Identities=11%  Similarity=0.010  Sum_probs=41.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCC-C-CceEE---cCCCc--EEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-G-SDTYL---TSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~v~---~~~g~--~~~~d~vv~a~G~~  219 (275)
                      ..+...+.+.+++.|++++.++.++++..++ + ...+.   ..+|+  .+.++.||+|||-.
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  211 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY  211 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            3567777887888899999999999987554 3 33343   24564  68899999999944

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.74  E-value=1.3e-07  Score=84.55  Aligned_cols=38  Identities=24%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ..+||+|||||.|||+||+.++ .|.+|+|+||....+.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g   66 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS   66 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence            3589999999999999999997 6999999999887553

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2e-07  Score=83.01  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=41.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eE---EcCCCc--EEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~  219 (275)
                      ..+...+.+.+++.||+++.++.++++..+++.+ .+   ...+|+  .+.++.||+|+|-.
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            3567778888888899999999999986544432 23   234554  58999999999964

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.72  E-value=2e-07  Score=83.71  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~--g~~v~vie~~~~   46 (275)
                      ..+||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            46899999999999999999983  899999999875

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=2.5e-07  Score=81.92  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-c-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYL---TSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~~~~d~vv~a~G~~  219 (275)
                      ..+...+.+.+++.|++++.++.++++..+++. + .+.   ..+|+  .+.++.||+|||-.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            456777778788889999999999998765443 3 233   24564  58899999999954

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.71  E-value=3.6e-07  Score=81.44  Aligned_cols=55  Identities=15%  Similarity=-0.041  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  219 (275)
                      .+...+.+.+++.|++++.++.++++..+++.+ .+.   ..+|+  .+.++.||+|+|-.
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            456677777878899999999999987655433 232   24564  58999999999954

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.71  E-value=2.5e-07  Score=80.45  Aligned_cols=54  Identities=13%  Similarity=0.149  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCC--CC----ceEEcCCC---cEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~  219 (275)
                      +.+.+.+.+++.|++|+.+++|++|+.++  +.    ..+.+.+|   +++.+|.||+|++..
T Consensus       221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            56778888999999999999999997643  22    22344433   468999999998854

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.70  E-value=2.7e-08  Score=86.92  Aligned_cols=57  Identities=16%  Similarity=0.077  Sum_probs=41.8

Q ss_pred             cchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EEcCC-C--cEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTST-G--DTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~-g--~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++ .||+++.++.++++..+++.+. +...+ +  ..+.++.||+|+|-..
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            3567778888877 6999999999999876554332 43332 3  3689999999999654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=3.4e-07  Score=81.68  Aligned_cols=41  Identities=17%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      |....+||+|||+|.|||+||+.++ .|.+|+||||....+.
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g   49 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            3345689999999999999999997 6999999999876543

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.67  E-value=1.6e-07  Score=84.24  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      .+||+|||+|.|||+||+.++ .|.+|+|+||....+.
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g   87 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS   87 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence            479999999999999999997 6999999999876553

>PLN02487 zeta-carotene desaturase

Probab=98.66  E-value=3.4e-07  Score=80.70  Aligned_cols=55  Identities=7%  Similarity=0.063  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCC--CC----ceEEc---CCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLT---STGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.++++|++|++++.|++|+.+.  ++    ..+.+   .+++.+.+|.||++++..
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            478889999999999999999999998753  22    23555   334578999999999864

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.66  E-value=4.5e-07  Score=80.22  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~   49 (275)
                      ..+||+|||+|.|||+||++++.|.+|+|+||.+..+.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg   45 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS   45 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence            35899999999999999999988999999999887654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.66  E-value=1.7e-07  Score=69.02  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             CCCEEE-cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          177 KKVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       177 ~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .|+++. ...+|+.+...++...+.+.+|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            465554 356899999888888899999999999999999995

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.65  E-value=2.4e-07  Score=76.07  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-------cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-------~g~~v~vie~~~~~~~~   50 (275)
                      ...+||+|||||||||+||.+|+       +..+|.|+||...+|.+
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh  120 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH  120 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence            34589999999999999999885       26799999999998854

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.65  E-value=8e-07  Score=78.05  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=33.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~   49 (275)
                      .+||+|||+|.|||+||.+++.|.+|+|+||.+..+.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g   39 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS   39 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence            5799999999999999999988999999999987553

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.64  E-value=2e-07  Score=83.90  Aligned_cols=39  Identities=23%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ...+||+|||||.|||+||..++ .|.+|+|+||.+..+.
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            44689999999999999999998 6999999999876543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.63  E-value=2.6e-07  Score=82.27  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~   49 (275)
                      ..+||+|||||.|||+||+.++ .  |.+|+|+||....+.
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            3579999999999999999997 3  589999999876553

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=3.4e-07  Score=81.60  Aligned_cols=37  Identities=24%  Similarity=0.187  Sum_probs=33.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      .+||+|||+|.|||+||+.++ .|.+|+|+||....+.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            579999999999999999997 6999999999876553

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.61  E-value=2.4e-07  Score=81.23  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCC--CCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVS--EGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~--~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++. |+.++.+ .+..+..+  +....|.+.+|..+.||.||+|+|...
T Consensus        97 ~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            3566677777776 7888765 56565433  334568888898999999999999774

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.60  E-value=1.3e-06  Score=78.26  Aligned_cols=35  Identities=23%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~   47 (275)
                      .+||+|||||.|||+||+.++ .  |.+|+||||....
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            479999999999999999997 4  8999999998753

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.59  E-value=3.4e-07  Score=77.05  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccc
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI   49 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~   49 (275)
                      ||+|||||+||+++|+.|+ .  |++|+|+|+.+..+.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            7999999999999999997 3  999999999886553

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.57  E-value=2.7e-06  Score=75.91  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||+|||+|++|+++|+.++ .|.+|+||||++..+..
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   50 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT   50 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            4689999999999999999998 69999999998876643

>PRK07208 hypothetical protein; Provisional

Probab=98.57  E-value=6.7e-08  Score=84.47  Aligned_cols=55  Identities=15%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-e-EEc--CCCc--EEeecEEEEcCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-YLT--STGD--TINADCHFLCTGK  218 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-v~~--~~g~--~~~~d~vv~a~G~  218 (275)
                      ..+.+.+.+.+++.|++|+++++|++|..++++. . +..  .+|+  .+.+|.||+++..
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            3577888888988999999999999998876543 2 222  2453  5889999999774

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.57  E-value=4.9e-07  Score=80.60  Aligned_cols=39  Identities=33%  Similarity=0.347  Sum_probs=34.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      .+||+|||+|.+|+++|+.++ .|++|+|+||....|...
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            579999999999999999998 699999999998777544

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.57  E-value=4.9e-08  Score=84.17  Aligned_cols=55  Identities=24%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+...+.|++++.++ |..+..++++  ..|++.+|++++||.+|=|+|+..
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            467778888889999999886 6665544443  358888999999999999999864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.56  E-value=1.1e-06  Score=73.41  Aligned_cols=40  Identities=28%  Similarity=0.412  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~   51 (275)
                      ...+|+|||||+|||+||.+|- . ..+++|+|....+|+..
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            3568999999999999998886 5 56899999999988543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.56  E-value=7.1e-08  Score=83.46  Aligned_cols=40  Identities=40%  Similarity=0.671  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      .+.++|+|||||+|||+||..|. .|++|+|+|.+..+|+.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR   53 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence            45679999999999999999998 69999999999998854

>PRK08275 putative oxidoreductase; Provisional

Probab=98.55  E-value=1.1e-06  Score=77.95  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEE---cCCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYL---TSTGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.++.++++..+ ++.+ .+.   ..+|+  .+.++.||+|+|-..
T Consensus       138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            46777888888899999999999999765 3332 333   34564  578999999999653

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.55  E-value=2.1e-07  Score=88.97  Aligned_cols=39  Identities=31%  Similarity=0.454  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||||||+|.||++||++++ .|.+|+|+||.+..|+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            4589999999999999999998 69999999999887754

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.55  E-value=2.5e-07  Score=81.20  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ...+||+|||+|.|||+||+.++ +.+|+|+||...
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence            34689999999999999999997 679999999886

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.53  E-value=4.7e-07  Score=71.96  Aligned_cols=183  Identities=21%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecCeEE
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL   93 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   93 (275)
                      .|+|||+|.|||+|+..+- .+..|+++|++..+|+......+.+...-.+..        .+..               
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ--------~~~~---------------   67 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQ--------EKLH---------------   67 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhh--------hhcc---------------
Confidence            6999999999999999987 566799999999988665443332221110000        0000               


Q ss_pred             ecCC-eEEeCCEEEEccCCCCCCCchHHHHHHHHhcCCcchhhHHH-------HHhhhCCCCEEEEEeCCCcccCcCCcc
Q 023957           94 TAEG-RRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAG-------EIAVDFPEKKVTLVHKGSRLLEFIGPK  165 (275)
Q Consensus        94 ~~~~-~~~~~~~lilatG~~~~~~~~~~~~l~~~~~~g~~~~~~a~-------~l~~~~~~~~v~~~~~~~~~~~~~~~~  165 (275)
                      ..+. +.+.-|.+.-|.+..  .|    +.++.+.....+++++..       .+..+..|..+---+|.....+..- +
T Consensus        68 i~Dsp~lf~~Dtl~saksk~--~~----eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgf-e  140 (477)
T KOG2404|consen   68 IKDSPELFVKDTLSSAKSKG--VP----ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGF-E  140 (477)
T ss_pred             cccChHHHhhhhhhhcccCC--cH----HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCch-H
Confidence            0000 001112221222211  11    222222222222322221       1222234555544455554443221 3


Q ss_pred             hHHHHHHHHHh----C--CCEEEcCceeeeecCCCCCce-EEc--CCCc--EEeecEEEEcCCCCCC--chhhcc
Q 023957          166 AGDKTRDWLIS----K--KVDVKLGERVNLDSVSEGSDT-YLT--STGD--TINADCHFLCTGKPVG--SDWLKD  227 (275)
Q Consensus       166 ~~~~~~~~~~~----~--gv~i~~~~~v~~i~~~~~~~~-v~~--~~g~--~~~~d~vv~a~G~~~~--~~~~~~  227 (275)
                      +...+...+++    +  -++|..+++|.+|..+++.+. |+.  .+|+  .+.+|.||+|+|--..  ..++..
T Consensus       141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKe  215 (477)
T KOG2404|consen  141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKE  215 (477)
T ss_pred             HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHH
Confidence            45555444432    2  378999999999997766543 443  3343  6889999999984332  344444

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.53  E-value=6.3e-07  Score=79.75  Aligned_cols=55  Identities=20%  Similarity=0.036  Sum_probs=39.4

Q ss_pred             cchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EE---cCCCc--EEeecEEEEcCCC
Q 023957          164 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YL---TSTGD--TINADCHFLCTGK  218 (275)
Q Consensus       164 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~d~vv~a~G~  218 (275)
                      ..+...+.+.+.+ .+|+++.++.++++..+++.+. +.   ..+|+  .+.++.||+|+|-
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            3466677766655 4899999999999876554332 22   34663  6889999999984

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PLN02815 L-aspartate oxidase

Probab=98.52  E-value=2.5e-07  Score=82.24  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||+|||+|.|||+||+.++ .| +|+|+||.+..+..
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            3589999999999999999998 57 99999999876643

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.49  E-value=1.3e-06  Score=80.45  Aligned_cols=34  Identities=32%  Similarity=0.609  Sum_probs=30.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~   47 (275)
                      ++|+||||||+||++|+.|+ .  |++|+|+|+++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            37999999999999999997 4  8999999998753

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.48  E-value=3.5e-06  Score=67.33  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCc--EEeecEEEEcCCCCCCchhhc------c--cccccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGD--TINADCHFLCTGKPVGSDWLK------D--TILKDS  233 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~--~~~~d~vv~a~G~~~~~~~~~------~--~~~~~~  233 (275)
                      .+.+.+...++..|.-++.+.+|...+..++++. +.+.+..  .+.+|..|+|+|.--..-+..      +  .++++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~  338 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL  338 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence            4677888899999999999999999987777665 6666665  467999999999543221111      0  111111


Q ss_pred             cCCC-------C----------ceEeCCCcccc----CCCCeEEeccccCCCCCCC
Q 023957          234 LDTH-------G----------MLMVDENLRVK----GQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       234 ~~~~-------g----------~i~v~~~~~~~----~~~~v~a~Gd~~~~~~~~~  268 (275)
                      -+++       .          .+.+|..++..    -+.|+|++|.+.+.+++..
T Consensus       339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~  394 (421)
T COG3075         339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIA  394 (421)
T ss_pred             cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHH
Confidence            1111       0          14555555541    2468999999988777643

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.9e-07  Score=79.05  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=33.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ++|+|+|||+|||+||++|+ .|++|+|+|+++.+|+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            48999999999999999999 7999999999999884

>PLN02576 protoporphyrinogen oxidase

Probab=98.43  E-value=2.6e-07  Score=81.13  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~   50 (275)
                      .++||+|||||++||+||++|+ . |++|+|+|+++.+|+.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            4579999999999999999998 6 8999999999998854

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.42  E-value=4.2e-06  Score=74.92  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      |+|||+|.|||+||+.++ .|.+|+|+||....
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            699999999999999998 69999999998843

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.41  E-value=3.4e-06  Score=72.79  Aligned_cols=64  Identities=19%  Similarity=0.265  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCC--CCCc-eEEcC-CCcEEeecEEEEcCC-CCCCchhhcc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTS-TGDTINADCHFLCTG-KPVGSDWLKD  227 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~~~~d~vv~a~G-~~~~~~~~~~  227 (275)
                      ..+.+.+.+.+++.|++++++++++++..+  ++.+ .+... ++..+.++.||+|+| +..|.+++..
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            356778888889999999999999998765  2322 24433 345799999999999 5555555543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.39  E-value=2.7e-07  Score=79.91  Aligned_cols=78  Identities=14%  Similarity=0.000  Sum_probs=57.0

Q ss_pred             EEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCCCCchhhccc
Q 023957          150 TLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT  228 (275)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~  228 (275)
                      .+..+.+..+.  +..+++++...+++.|..|+.++.|+++....+ ...|.+.-|. +++..+|.|+|++. .+.-...
T Consensus       175 ~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWA-r~Vg~m~  250 (856)
T KOG2844|consen  175 GLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWA-REVGAMA  250 (856)
T ss_pred             eeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHH-HHhhhhc
Confidence            44545544322  236789999999999999999999999976554 4468888886 99999999999986 3333333


Q ss_pred             ccc
Q 023957          229 ILK  231 (275)
Q Consensus       229 ~~~  231 (275)
                      ++.
T Consensus       251 gvk  253 (856)
T KOG2844|consen  251 GVK  253 (856)
T ss_pred             CCc
Confidence            443

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.39  E-value=3.7e-07  Score=76.41  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ++||+|||||++|+++|+.|+ .|.+|+|+|+++..|+
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            369999999999999999998 6999999999988775

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02568 polyamine oxidase

Probab=98.39  E-value=4e-07  Score=80.07  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      -+|+++++|+.|+..++.+.|.+.+|+++.||.||+++..
T Consensus       255 ~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        255 GTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             CEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            4699999999999888888899999988999999999763

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=2.8e-07  Score=78.28  Aligned_cols=33  Identities=33%  Similarity=0.421  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .|||+|||||.||+.||+..+ .|++++++--+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            499999999999999999987 599999987654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.36  E-value=4.9e-07  Score=77.72  Aligned_cols=36  Identities=36%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ||||||||++|++||+.++ .|.+|+|||+.+.+|+.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~   37 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGM   37 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCc
Confidence            8999999999999999998 69999999999988743

>PTZ00367 squalene epoxidase; Provisional

Probab=98.31  E-value=5.5e-07  Score=79.53  Aligned_cols=35  Identities=26%  Similarity=0.537  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.++||+|||||++|+++|+.|+ .|++|+|+|+..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35689999999999999999998 699999999976

>PLN02985 squalene monooxygenase

Probab=98.27  E-value=1e-06  Score=77.30  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++||+|||||++|+++|+.|+ .|++|+|+||...
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            45689999999999999999998 6999999999753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.25  E-value=3.1e-06  Score=72.53  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      .+.+++|||||+.|+..|..++ .|.+|||+|+.+.+-.           .++.+......+.+  .++.+... .+..+
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-----------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~  240 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-----------GEDPEISKELTKQLEKGGVKILLNTKVTAV  240 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-----------cCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence            4578999999999999999887 5999999999987641           11111111111111  12333222 22222


Q ss_pred             ec--C--eEEecCCe--EEeCCEEEEccCCCCCCCch
Q 023957           88 TE--N--EVLTAEGR--RVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        88 ~~--~--~v~~~~~~--~~~~~~lilatG~~~~~~~~  118 (275)
                      ..  .  .+.++++.  .+.+|.+++|+|-.|....+
T Consensus       241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L  277 (454)
T COG1249         241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL  277 (454)
T ss_pred             EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence            21  1  35555554  68899999999999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.25  E-value=1.2e-06  Score=73.72  Aligned_cols=35  Identities=37%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +.||+|||||++|+.+|+.|+ +|++|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            369999999999999999998 69999999976654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.20  E-value=1.4e-05  Score=65.31  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCc---c--------cCcC-----CcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      +|+.|++.|..+.  ..+.+++++++.+.   +        .+.+     ..++...+.+.+++.|++++. .+|..++.
T Consensus         8 ~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~   84 (300)
T TIGR01292         8 AGPAGLTAAIYAA--RANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDL   84 (300)
T ss_pred             CCHHHHHHHHHHH--HCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEe
Confidence            6788999999988  46888999997541   1        0111     134567777888889999998 88999987


Q ss_pred             CCCCceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957          193 SEGSDTYLTSTGDTINADCHFLCTGKPVGSD  223 (275)
Q Consensus       193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  223 (275)
                      .++.+.+.+.++.++.+|.+|+|+|..|+..
T Consensus        85 ~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        85 SDRPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            7666778778888899999999999987543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.20  E-value=1.6e-06  Score=77.49  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.+|+|||||++||++|+.|+ +|++|+||||.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            4589999999999999999998 699999999975

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.20  E-value=1.9e-06  Score=68.63  Aligned_cols=38  Identities=13%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ++|++|||+|++|+.+|..|+ .|.+|+|+||++++|+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN   39 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence            479999999999999999877 59999999999999843

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.18  E-value=4e-06  Score=65.76  Aligned_cols=47  Identities=30%  Similarity=0.504  Sum_probs=37.9

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cC------CcEEEEcCCCCcccccccccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FS------ADVTLIDPKEYFEITWASLRA   56 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g------~~v~vie~~~~~~~~~~~~~~   56 (275)
                      +...++|+|||||+.|.++||+|. ++      .+|++||+....+...+...+
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasg   60 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASG   60 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccch
Confidence            445589999999999999999997 23      789999999988766554433

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.16  E-value=1.3e-05  Score=66.71  Aligned_cols=55  Identities=5%  Similarity=-0.094  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+..++.+.+++.|.+|.++..|.+|..+++. ..|.++||+++.+..||.-++..
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~  320 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW  320 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence            47788889999999999999999999877654 45899999999998888777754

>PLN02676 polyamine oxidase

Probab=98.15  E-value=2.8e-06  Score=74.11  Aligned_cols=40  Identities=23%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+|+++++|++|+..++.+.|.+.+|+++.||.||++.+.
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            6799999999999888888899999989999999999873

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.15  E-value=9.1e-06  Score=68.87  Aligned_cols=95  Identities=23%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      .++|+|||||+.|+.+|..|. .|.+|+++++.+.+....      ..............+  .++++.. ..+..+...
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  212 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL------MPPEVSSRLQHRLTE--MGVHLLLKSQLQGLEKT  212 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh------CCHHHHHHHHHHHHh--CCCEEEECCeEEEEEcc
Confidence            468999999999999999998 699999999987643110      000000000000000  1344432 233334322


Q ss_pred             ----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           91 ----EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        91 ----~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                          .+.+.++..+.+|.+++|+|..|..
T Consensus       213 ~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        213 DSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             CCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence                4566788889999999999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.11  E-value=9.3e-06  Score=70.16  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       ....... +....+ ..+++++. ..+..++..
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~-------d~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~  218 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM-------DADMNQP-ILDELD-KREIPYRLNEEIDAINGN  218 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-------CHHHHHH-HHHHHH-hcCCEEEECCeEEEEeCC
Confidence            468999999999999999998 699999999987643110       0000000 000000 01445542 334445545


Q ss_pred             eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           91 EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+.+.+++.+.+|.+++|+|..|..+
T Consensus       219 ~v~~~~g~~~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        219 EVTFKSGKVEHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             EEEECCCCEEEeCEEEECcCCCcChH
Confidence            66666777899999999999998764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.10  E-value=3.3e-06  Score=74.37  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .+||||||+| +||+||++++ .|.+|+||||.+..|
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            5899999999 9999999998 699999999988755

>PLN02529 lysine-specific histone demethylase 1

Probab=98.09  E-value=4.2e-06  Score=75.74  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..++|+|||||++||+||..|+ +|++|+|+|++..+|+.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR  198 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence            4589999999999999999998 79999999999988754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.09  E-value=4.1e-06  Score=74.87  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      +.||||||+|.|||+||+.++ .|.+|+|+||.+..+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~   39 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR   39 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            469999999999999999997 699999999987644

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.08  E-value=1.3e-05  Score=69.44  Aligned_cols=96  Identities=21%  Similarity=0.274  Sum_probs=58.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++++.+.+....       ...... ......+ ..++++... .+..++. 
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~-~~~~~l~-~~GI~i~~~~~V~~i~~~  227 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-------EPSVAA-LAKQYME-EDGITFLLNAHTTEVKND  227 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-------CHHHHH-HHHHHHH-HcCCEEEcCCEEEEEEec
Confidence            468999999999999999987 699999999987653110       000000 0000000 013444322 2333332 


Q ss_pred             -Ce-EEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 -NE-VLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~~-v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       .. +...++.++.+|.+++|+|..|....
T Consensus       228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~  257 (438)
T PRK07251        228 GDQVLVVTEDETYRFDALLYATGRKPNTEP  257 (438)
T ss_pred             CCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence             22 22335668999999999999987654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.08  E-value=6.6e-06  Score=53.13  Aligned_cols=34  Identities=44%  Similarity=0.695  Sum_probs=31.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      +|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            5899999999999999998 699999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.07  E-value=4.7e-06  Score=75.90  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ...+|+|||||++||+||+.|+ +|++|+|+|++..+|+.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence            4579999999999999999998 79999999999988754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.06  E-value=4.7e-06  Score=74.34  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||||||+|.+||+||+.++ .|.+|+|+||.+..+..
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            3589999999999999999997 79999999999887654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.05  E-value=1.5e-05  Score=69.15  Aligned_cols=96  Identities=18%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...   +..............      .+++++.. .+..+.. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---~d~~~~~~~~~~l~~------~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---FDSMISETITEEYEK------EGINVHKLSKPVKVEKT  236 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cCHHHHHHHHHHHHH------cCCEEEcCCEEEEEEEe
Confidence            478999999999999999998 69999999988754311   100000000000000      13333321 1222221 


Q ss_pred             ----CeEEecCC-eEEeCCEEEEccCCCCCCCc
Q 023957           90 ----NEVLTAEG-RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 ----~~v~~~~~-~~~~~~~lilatG~~~~~~~  117 (275)
                          ..+.+.++ ..+.+|.+++|+|..|....
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence                13445556 57899999999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.04  E-value=1.5e-05  Score=69.39  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=58.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+...   .    .............+  .+++++.. .+..++  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~----~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG---E----DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN  240 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC---C----CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            478999999999999999998 69999999998764311   0    00000000000000  13444332 233332  


Q ss_pred             cC--eEEecCC--eEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~~--~~~~~~~lilatG~~~~~~  116 (275)
                      ..  .+...++  ..+.+|.+++|+|..|...
T Consensus       241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            22  2333455  4789999999999998776

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.03  E-value=1.5e-05  Score=69.60  Aligned_cols=96  Identities=22%  Similarity=0.385  Sum_probs=57.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+....       ..... ..+....+ ..+++++.. .+..+.  
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-------~~~~~-~~l~~~l~-~~gI~i~~~~~v~~i~~~  250 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-------DAELS-KEVARLLK-KLGVRVVTGAKVLGLTLK  250 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-------CHHHH-HHHHHHHH-hcCCEEEeCcEEEEEEEe
Confidence            478999999999999999998 699999999987642110       00000 00000000 013444322 223332  


Q ss_pred             -cC---eEEecCC--eEEeCCEEEEccCCCCCCCc
Q 023957           89 -EN---EVLTAEG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 -~~---~v~~~~~--~~~~~~~lilatG~~~~~~~  117 (275)
                       ..   .+...++  ..+.+|.+++|+|..|..+.
T Consensus       251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~  285 (472)
T PRK05976        251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG  285 (472)
T ss_pred             cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence             12   1223345  46899999999999987754

>PRK07846 mycothione reductase; Reviewed

Probab=98.03  E-value=2.2e-05  Score=68.08  Aligned_cols=95  Identities=16%  Similarity=0.255  Sum_probs=59.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...   .    +.... ..+....  ..++++.. ..+..++. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH---L----DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence            478999999999999999998 69999999998754311   0    00000 0000000  01233322 22333321 


Q ss_pred             -C--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.+.++..+++|.+++|+|..|..+.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  266 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL  266 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence             1  355567778999999999999987754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.02  E-value=2e-05  Score=67.80  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccE
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGR   78 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (275)
                      .+|+|||||++|+.+|..|+               .+.+|+|+++.+.+...   +    ..... ........ ..+++
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---~----~~~~~-~~~~~~L~-~~gV~  244 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---F----DQALR-KYGQRRLR-RLGVD  244 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc---C----CHHHH-HHHHHHHH-HCCCE
Confidence            48999999999999998875               26789999988754311   0    00000 00000000 12566


Q ss_pred             EE-EeeeeEeecCeEEecCCeEEeCCEEEEccCCCCC
Q 023957           79 IV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDP  114 (275)
Q Consensus        79 ~~-~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~  114 (275)
                      ++ ...+..++...+.+.+|+++++|.+++++|..|.
T Consensus       245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence            65 4455566667788888989999999999998764

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.02  E-value=1.2e-05  Score=68.29  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~   50 (275)
                      ++++-|||+|+|+|+||.+|-     +|.+|+|+|+.+..|+.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs   44 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS   44 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence            468899999999999999994     58899999999887743

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.01  E-value=5.3e-06  Score=67.87  Aligned_cols=63  Identities=14%  Similarity=0.044  Sum_probs=41.7

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecC--CCCC-ceEEc--CCCc----EEeecEEEEcCCCCCCchhhccccc
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSV--SEGS-DTYLT--STGD----TINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~-~~v~~--~~g~----~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ..+...++..|++|++++.|++|..  ++.. ..|++  .++.    .+.++.||+|+|....+.+|..+++
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            3344555445999999999999944  2332 22433  3343    5678999999997766677777765

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.01  E-value=6.7e-06  Score=72.80  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~   48 (275)
                      ..+||+|||+|.|||+||++++.+.+|+|+||....+
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~   43 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSE   43 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCC
Confidence            4589999999999999999998668999999987644

>PRK06116 glutathione reductase; Validated

Probab=98.00  E-value=1.8e-05  Score=68.72  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...+       .+...........  ..+++++. ..+..+.. 
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  237 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF-------DPDIRETLVEEME--KKGIRLHTNAVPKAVEKN  237 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc-------CHHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence            478999999999999999998 699999999877542111       0000000000000  01344432 22333321 


Q ss_pred             ----CeEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 ----NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 ----~~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                          ..+.+.++..+.+|.+++|+|..|....
T Consensus       238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~  269 (450)
T PRK06116        238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG  269 (450)
T ss_pred             CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence                1355567778999999999999987754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.00  E-value=2e-05  Score=67.92  Aligned_cols=96  Identities=23%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++++.+.+...  .+    ..... ..+....+ ..+++++. ..+..++..
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--~~----~~~~~-~~~~~~l~-~~gV~v~~~~~v~~i~~~  208 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--LF----DEEMN-QIVEEELK-KHEINLRLNEEVDSIEGE  208 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--cc----CHHHH-HHHHHHHH-HcCCEEEeCCEEEEEecC
Confidence            468999999999999999998 69999999988764210  00    00000 00000000 01444432 233344332


Q ss_pred             --eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           91 --EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 --~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                        .+...++..+.+|.+++|+|..|..+
T Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       209 ERVKVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence              23455677899999999999987754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.00  E-value=1.5e-05  Score=68.26  Aligned_cols=92  Identities=18%  Similarity=0.307  Sum_probs=62.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc--ccccccCCcccccccccccccccccEEE-EeeeeEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--SLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (275)
                      ..+++|||+|++|+.+|..|+ +|++|+++|+.+.++....  .+...+...+         +. .++++. ...+..++
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l---------~~-~gi~~~~~~~~~~i~  205 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELL---------EK-YGVELLLGTKVVGVE  205 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHH---------HH-CCcEEEeCCceEEEE
Confidence            479999999999999999998 7999999999998874432  1111111111         11 123332 22334443


Q ss_pred             cC----e---EEecCCeEEeCCEEEEccCCCCC
Q 023957           89 EN----E---VLTAEGRRVVYDYLVIATGHKDP  114 (275)
Q Consensus        89 ~~----~---v~~~~~~~~~~~~lilatG~~~~  114 (275)
                      .+    .   +...++..+++|.+++++|..|.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            32    1   56667888999999999999986

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.00  E-value=6.9e-06  Score=69.62  Aligned_cols=35  Identities=37%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .+|+|||||++|+.+|+.|+ +|++|+|||+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            37999999999999999998 699999999877644

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.00  E-value=7.3e-06  Score=67.63  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=31.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +.+|+|||||++|+++|..|. +|++|+|+|+.+.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            358999999999999999998 69999999997653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.99  E-value=2.1e-05  Score=68.60  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+.... .+..... ..++++... .+..++. 
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~-~l~~~l~-~~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISK-LAERALK-KRGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHH-HHHHHHH-HcCCEEEeCCEEEEEEEe
Confidence            468999999999999999998 699999999987653110       000000 0000000 013444332 2333332 


Q ss_pred             -C--eEEecCC---eEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~~~---~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.+.++   +.+.+|.+++|+|..|....
T Consensus       243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence             1  2333444   67899999999999987653

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.99  E-value=8.8e-06  Score=72.30  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      .+||+|||+|.+|+++|+.++ .|.+|+||||....|..
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            589999999999999999998 69999999999876644

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.97  E-value=4.4e-05  Score=58.72  Aligned_cols=89  Identities=22%  Similarity=0.270  Sum_probs=60.5

Q ss_pred             CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccC--------------c-C----------------------------Cc
Q 023957          129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE--------------F-I----------------------------GP  164 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~--------------~-~----------------------------~~  164 (275)
                      +|+.|+..|..|.+  .+.+ +.++++.+.+..              . +                            ..
T Consensus         5 aG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (203)
T PF13738_consen    5 AGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGE   82 (203)
T ss_dssp             -SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHH
T ss_pred             cCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCCHH
Confidence            67888888888874  4666 899997644310              0 0                            01


Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ++.+.+.+..++.++++..+++|+++..+++.+.+.+.+++++.||.||+|+|..
T Consensus        83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence            2335566777889999999999999999888888999999889999999999963

...

>PRK02106 choline dehydrogenase; Validated

Probab=97.97  E-value=9.3e-06  Score=72.40  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=33.8

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~   46 (275)
                      |+...+|+||||||++|+.+|.+|+  .|.+|+|||+.+.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4556799999999999999999997  4999999999864

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.95  E-value=9.5e-06  Score=71.08  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~   52 (275)
                      |||+|||+||+|+.+|+.|+ .|++|++||++...+..|.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            69999999999999999998 6999999999998876553

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.95  E-value=2.6e-05  Score=67.94  Aligned_cols=95  Identities=18%  Similarity=0.293  Sum_probs=59.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   88 (275)
                      .++|+|||||+.|+.+|..|+ .|.+|+++++.+.+...       ..............+  .+++++. ..+..+.  
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~  245 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------LDDEISDALSYHLRD--SGVTIRHNEEVEKVEGG  245 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------CCHHHHHHHHHHHHH--cCCEEEECCEEEEEEEe
Confidence            478999999999999999998 69999999998754311       010000000000000  1344432 2233332  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ..  .+.+.++..+.+|.+++|+|..|...
T Consensus       246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        246 DDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             CCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence            22  34456677899999999999998764

>PRK12839 hypothetical protein; Provisional

Probab=97.93  E-value=1.3e-05  Score=71.34  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..+||+|||+|.+|+++|+.++ .|.+|+||||....++.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   46 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA   46 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            4689999999999999999998 69999999999876644

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.93  E-value=1.2e-05  Score=66.54  Aligned_cols=37  Identities=27%  Similarity=0.464  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~   48 (275)
                      ..++|+|+|||++||++||+|+ ++  ..++|+|+.+..|
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            4579999999999999999998 34  4577799999988

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.91  E-value=1.3e-05  Score=70.66  Aligned_cols=40  Identities=30%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ++...+||+|||||.|||.||..++ .|.+|+|+||....+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            3455689999999999999999998 699999999988755

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.91  E-value=1.4e-05  Score=70.91  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..+||+|||+| +|++||..++ .|.+|+|+||.+.+|+..
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~   54 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST   54 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence            46899999999 8999999998 699999999998877543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.90  E-value=3.8e-05  Score=66.84  Aligned_cols=96  Identities=17%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+++|||||++|+.+|..|+ .|.+|+++++.+.+....       ...... .+..... ..++++... .+..++. 
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~-~l~~~L~-~~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAH-ILREKLE-NDGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHH-HHHHHHH-HCCCEEEECCEEEEEEEc
Confidence            468999999999999999887 699999999987643110       000000 0000000 014444332 2333332 


Q ss_pred             -CeEEe-cCC--eEEeCCEEEEccCCCCCCCc
Q 023957           90 -NEVLT-AEG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~~v~~-~~~--~~~~~~~lilatG~~~~~~~  117 (275)
                       ..+.. .++  .++.+|.+++|+|..|....
T Consensus       241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence             22222 233  36899999999999987653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.90  E-value=3.4e-05  Score=66.90  Aligned_cols=95  Identities=23%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .............+  .+++++.. .+..+.. 
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  236 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGF-------DDDMRALLARNMEG--RGIRIHPQTSLTSITKT  236 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCccc-------CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEEc
Confidence            468999999999999999988 699999999877542110       00000000000000  14444432 2333321 


Q ss_pred             -C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 -~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                       .  .+.+.++..+.+|.+++|+|..|...
T Consensus       237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       237 DDGLKVTLSHGEEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             CCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence             1  45555677899999999999997764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.90  E-value=2.1e-05  Score=66.01  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh---c-----------CCcEEEEcCCCCccccccccccccCCcccccccccccccc--ccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---F-----------SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNG   77 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~-----------g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   77 (275)
                      -+|+|||||+.|..+|-+|+   +           ..+|+|+|+.+.+...           +..+......+.+  .++
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-----------~~~~l~~~a~~~L~~~GV  224 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-----------FPPKLSKYAERALEKLGV  224 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-----------CCHHHHHHHHHHHHHCCC
Confidence            47999999999999998885   1           1389999999876421           1111111111111  256


Q ss_pred             EEE-EeeeeEeecCeEEecCCe-EEeCCEEEEccCCCCC
Q 023957           78 RIV-ASPAINITENEVLTAEGR-RVVYDYLVIATGHKDP  114 (275)
Q Consensus        78 ~~~-~~~~~~~~~~~v~~~~~~-~~~~~~lilatG~~~~  114 (275)
                      ++. ...+..++++.+.+.++. +++++.+|.++|.++.
T Consensus       225 ~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~  263 (405)
T COG1252         225 EVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS  263 (405)
T ss_pred             EEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence            664 456678888899998887 4999999999998743

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.88  E-value=4.4e-05  Score=70.60  Aligned_cols=96  Identities=22%  Similarity=0.322  Sum_probs=59.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   89 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...      ....... ..+....+ ..+++++... +..+.. 
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~------~ld~~~~-~~l~~~l~-~~GV~v~~~~~v~~i~~~  211 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK------QLDQTAG-RLLQRELE-QKGLTFLLEKDTVEIVGA  211 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh------hcCHHHH-HHHHHHHH-HcCCEEEeCCceEEEEcC
Confidence            468999999999999999998 69999999987754211      0000000 00000000 0134443322 223321 


Q ss_pred             ---CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 ---NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ---~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                         ..+.+.++..+++|.+++|+|..|...
T Consensus       212 ~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~  241 (785)
T TIGR02374       212 TKADRIRFKDGSSLEADLIVMAAGIRPNDE  241 (785)
T ss_pred             CceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence               246677888999999999999998764

>TIGR03452 mycothione_red mycothione reductase

Probab=97.87  E-value=6.1e-05  Score=65.41  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=58.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   88 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    +..... .+....  ..++++.. ..+..+.  
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~  238 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH---L----DEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD  238 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc---c----CHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence            478999999999999999998 69999999998764311   0    000000 000000  01233321 2223332  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      ..  .+.+.+++++.+|.+++|+|..|....
T Consensus       239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence            12  344556778999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=1.5e-05  Score=66.87  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~   44 (275)
                      ...|||+|||||.||..||.+.++ |.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            356999999999999999988874 9999998765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.86  E-value=7e-05  Score=65.50  Aligned_cols=96  Identities=21%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       .............+  .++++... .+..++. 
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence            479999999999999999987 699999999987543110       00000000000000  13444322 3333332 


Q ss_pred             -C--eEEecC--C--eEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTAE--G--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~~--~--~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+...+  +  ..+++|.+++|+|..|..+.
T Consensus       254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~  288 (475)
T PRK06327        254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG  288 (475)
T ss_pred             CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence             1  233222  3  46899999999999987653

>PRK14694 putative mercuric reductase; Provisional

Probab=97.86  E-value=7.2e-05  Score=65.29  Aligned_cols=94  Identities=17%  Similarity=0.257  Sum_probs=56.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++...+...        .+...........  ..+++++.. .+..++. 
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~--------~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~  247 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--------DPAVGEAIEAAFR--REGIEVLKQTQASEVDYN  247 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCC--------CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            468999999999999999998 69999999875433210        0000000000000  024455432 3333332 


Q ss_pred             -C--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.++ +..+.+|.+++|+|..|....
T Consensus       248 ~~~~~v~~~-~~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        248 GREFILETN-AGTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             CCEEEEEEC-CCEEEeCEEEEccCCCCCcCC
Confidence             2  23333 346999999999999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.85  E-value=4.6e-05  Score=66.59  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=57.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI   87 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (275)
                      ..+++|||||+.|+.+|..+.    .|.+|+|+|+.+.+...   .    ++............  .+++++.. .+..+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~---~----d~~~~~~l~~~L~~--~GI~i~~~~~v~~i  257 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG---F----DSTLRKELTKQLRA--NGINIMTNENPAKV  257 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---c----CHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence            478999999999999997653    38999999988764311   0    00000000000000  13333322 12223


Q ss_pred             ec-----CeEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        88 ~~-----~~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      ..     ..+.+.++..+++|.+++|+|..|....
T Consensus       258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence            21     1355556778999999999999987653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02507 glutathione reductase

Probab=97.83  E-value=5.8e-05  Score=66.26  Aligned_cols=95  Identities=27%  Similarity=0.335  Sum_probs=58.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc-cccccccCCcccccccccccccccccEEEEe-eeeEee-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+++.+...... ..+...+...        ..+  .+++++.. .+..+. 
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~--------l~~--~GI~i~~~~~V~~i~~  272 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN--------LEG--RGINLHPRTNLTQLTK  272 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH--------HHh--CCCEEEeCCEEEEEEE
Confidence            468999999999999999887 699999999876432100 0000000000        000  13444322 222332 


Q ss_pred             -cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 -~~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       ..  .+.+.++.++.+|.+++++|..|....
T Consensus       273 ~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        273 TEGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             eCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence             11  455566778999999999999987654

>PRK06370 mercuric reductase; Validated

Probab=97.83  E-value=7.4e-05  Score=65.16  Aligned_cols=95  Identities=17%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       ..... ..+..... ..+++++. ..+..++..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~-~~l~~~l~-~~GV~i~~~~~V~~i~~~  241 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVA-AAVREILE-REGIDVRLNAECIRVERD  241 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHH-HHHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence            478999999999999999998 699999999987653110       00000 00000000 02444432 233333321


Q ss_pred             ----eEEe---cCCeEEeCCEEEEccCCCCCCC
Q 023957           91 ----EVLT---AEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ----~v~~---~~~~~~~~~~lilatG~~~~~~  116 (275)
                          .+..   .++..+.+|.+++|+|..|...
T Consensus       242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence                2222   2345789999999999998765

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.82  E-value=2.2e-05  Score=64.24  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ...||+|||||.+|.+.|+.|. .|.+|+||||+-
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            4589999999999999999998 599999999864

>TIGR02053 MerA mercuric reductase

Probab=97.81  E-value=6e-05  Score=65.75  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   89 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++++.+.+....       .+.... .+..... ..+++++... +..+.. 
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~-~l~~~l~-~~gV~i~~~~~V~~i~~~  236 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISA-AVEEALA-EEGIEVVTSAQVKAVSVR  236 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHH-HHHHHHH-HcCCEEEcCcEEEEEEEc
Confidence            478999999999999999998 699999999987543111       000000 0000000 0134443322 333321 


Q ss_pred             -C--eEEec---CCeEEeCCEEEEccCCCCCCC
Q 023957           90 -N--EVLTA---EGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 -~--~v~~~---~~~~~~~~~lilatG~~~~~~  116 (275)
                       .  .+.+.   ++.++.+|.+++|+|..|...
T Consensus       237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence             1  22322   235789999999999998765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.79  E-value=7.3e-05  Score=65.20  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+++|||+|..|+.+|..|+ .|.+|+++++.+.+.....       .... ..+....+ ..+++++.. .+..++  
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d-------~~~~-~~l~~~L~-~~gV~i~~~~~v~~v~~~  247 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGED-------ADAA-EVLEEVFA-RRGMTVLKRSRAESVERT  247 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCC-------HHHH-HHHHHHHH-HCCcEEEcCCEEEEEEEe
Confidence            368999999999999999987 6999999998775431100       0000 00000000 013444322 223332  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      ..  .+.+.+++++.+|.+++++|..|....
T Consensus       248 ~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~  278 (466)
T PRK07845        248 GDGVVVTLTDGRTVEGSHALMAVGSVPNTAG  278 (466)
T ss_pred             CCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence            12  345556778999999999999987653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.78  E-value=2.3e-05  Score=70.10  Aligned_cols=32  Identities=19%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             eEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~   46 (275)
                      ||||||||.|||+||+.++     .|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999996     3899999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN03000 amine oxidase

Probab=97.76  E-value=3.2e-05  Score=70.78  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ...+|+|||||++||++|+.|+ .|++|+|+|++...|+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi  223 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV  223 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence            3589999999999999999998 699999999999988543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.76  E-value=9.1e-05  Score=64.57  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  205 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL  205 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            478999999999999999987 699999999987653

>PLN02976 amine oxidase

Probab=97.74  E-value=3.5e-05  Score=73.43  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..++|+|||||++|+++|+.|. .|++|+|||+++.+|+.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence            4589999999999999999998 699999999998887553

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.74  E-value=0.00011  Score=64.26  Aligned_cols=96  Identities=19%  Similarity=0.297  Sum_probs=57.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+....       ..... ..+..... ..+++++.. .+..+.. 
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~-~~l~~~l~-~~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVS-KEIAKQYK-KLGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHH-HHHHHHHH-HCCCEEEECCEEEEEEEe
Confidence            468999999999999999998 699999999876543110       00000 00000000 014444422 2333321 


Q ss_pred             -C--eEEec--CC--eEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~--~~--~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.+.  ++  ..+.+|.+++|+|..|....
T Consensus       243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG  277 (466)
T ss_pred             CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence             1  22322  45  46899999999999987653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.74  E-value=3.2e-05  Score=72.57  Aligned_cols=35  Identities=34%  Similarity=0.553  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+||+|||||.|||+||+.++ .|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3589999999999999999998 6999999999764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.74  E-value=8.2e-05  Score=64.95  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+|+|||||+.|+.+|..|. .|.+|+|+|+.+.+.
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            468999999999999999998 699999999987653

>PTZ00058 glutathione reductase; Provisional

Probab=97.74  E-value=8.9e-05  Score=65.73  Aligned_cols=96  Identities=11%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...   .    +............+  .++++... .+..+.. 
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~---~----d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~  307 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK---F----DETIINELENDMKK--NNINIITHANVEEIEKV  307 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc---C----CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence            578999999999999999988 69999999998754311   0    00000000000000  13333221 1222221 


Q ss_pred             --C--eEEe-cCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 --N--EVLT-AEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 --~--~v~~-~~~~~~~~~~lilatG~~~~~~~  117 (275)
                        .  .+.. +++..+.+|.+++|+|..|....
T Consensus       308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~  340 (561)
T PTZ00058        308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED  340 (561)
T ss_pred             CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence              1  2222 33457899999999999887654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.71  E-value=8.9e-05  Score=68.88  Aligned_cols=95  Identities=22%  Similarity=0.374  Sum_probs=59.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...  .+    +.... ..+....+ ..+++++.. .+..+.. 
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~--~l----d~~~~-~~l~~~L~-~~GV~v~~~~~v~~I~~~  216 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE--QL----DQMGG-EQLRRKIE-SMGVRVHTSKNTLEIVQE  216 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh--hc----CHHHH-HHHHHHHH-HCCCEEEcCCeEEEEEec
Confidence            468999999999999999998 69999999987754210  00    00000 00000000 013444322 2222321 


Q ss_pred             -----CeEEecCCeEEeCCEEEEccCCCCCC
Q 023957           90 -----NEVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        90 -----~~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                           ..+.+.++..+.+|.+++|+|..|..
T Consensus       217 ~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        217 GVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             CCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence                 14566788899999999999999875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.70  E-value=0.00015  Score=61.16  Aligned_cols=92  Identities=26%  Similarity=0.377  Sum_probs=56.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cC--CcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-ee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FS--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PA   84 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   84 (275)
                      ..+|+|||+|++|+.+|..|+     +|  .+|+|+.. +.+...   +    ...... ......+ ..+++++.. .+
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l~~---~----~~~~~~-~~~~~l~-~~gV~v~~~~~v  214 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLLPG---F----PAKVRR-LVLRLLA-RRGIEVHEGAPV  214 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccccc---C----CHHHHH-HHHHHHH-HCCCEEEeCCee
Confidence            358999999999999998886     24  48999943 322110   0    000000 0000000 024555543 34


Q ss_pred             eEeecCeEEecCCeEEeCCEEEEccCCCCC
Q 023957           85 INITENEVLTAEGRRVVYDYLVIATGHKDP  114 (275)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~lilatG~~~~  114 (275)
                      ..++...+.+.++.++.+|.+++|+|..|.
T Consensus       215 ~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       215 TRGPDGALILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             EEEcCCeEEeCCCCEEecCEEEEccCCChh
Confidence            445555677778889999999999998864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.68  E-value=0.00013  Score=63.70  Aligned_cols=95  Identities=17%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|. .|.+|+++|+.+.+...   .    ..... ..+....+ ..+++++.. .+..+.. 
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~---~----d~~~~-~~l~~~l~-~~gV~i~~~~~V~~i~~~  244 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG---T----DTETA-KTLQKALT-KQGMKFKLGSKVTGATAG  244 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---C----CHHHH-HHHHHHHH-hcCCEEEECcEEEEEEEc
Confidence            578999999999999999887 69999999987754311   0    00000 00000000 013444322 2333321 


Q ss_pred             -C--eEEe-----cCCeEEeCCEEEEccCCCCCCC
Q 023957           90 -N--EVLT-----AEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 -~--~v~~-----~~~~~~~~~~lilatG~~~~~~  116 (275)
                       .  .+..     .++..+.+|.+++|+|..|...
T Consensus       245 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~  279 (466)
T PRK06115        245 ADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ  279 (466)
T ss_pred             CCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence             1  2222     1235789999999999998764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.67  E-value=0.00038  Score=61.58  Aligned_cols=91  Identities=23%  Similarity=0.232  Sum_probs=71.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCC--ccc------------CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL------------EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      +|+.|+..|..+.  ..|.++.++....  ...            ....+++.+.+.+.+++.|++++.+++|..+...+
T Consensus       219 gGpaGl~aA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~  296 (517)
T PRK15317        219 GGPAGAAAAIYAA--RKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA  296 (517)
T ss_pred             CCHHHHHHHHHHH--HCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence            8899999999998  5688888886431  110            01223566778888888999999999999998766


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +...+.+.+|+++.+|.||+|+|..|.
T Consensus       297 ~~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        297 GLIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             CeEEEEECCCCEEEcCEEEECCCCCcC
Confidence            666777888888999999999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.66  E-value=0.00019  Score=63.17  Aligned_cols=95  Identities=20%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++...+.    .+    +............+  .+++++... +..+.  
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~  251 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----GF----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM  251 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----cC----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence            358999999999999999998 699999998743221    01    00000000000000  134443221 11221  


Q ss_pred             -cC-eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           89 -EN-EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 -~~-~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       .. .+.+.+++.+.+|.+++++|..|....
T Consensus       252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence             11 455556778899999999999987654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.63  E-value=0.00046  Score=61.00  Aligned_cols=91  Identities=16%  Similarity=0.241  Sum_probs=70.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCC--CcccC------------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKG--SRLLE------------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      +|+.|+..|..++  ..|.+++++...  .....            ...+.+.+.+.+.+++.|++++.+++|..+..++
T Consensus       220 gGpAGl~AA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~  297 (515)
T TIGR03140       220 GGPAGAAAAIYAA--RKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED  297 (515)
T ss_pred             CCHHHHHHHHHHH--HCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC
Confidence            8889999999998  578899888632  11110            1223456677788888999999999999997666


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +...+.+.+|+.+.+|.+|+|+|..|.
T Consensus       298 ~~~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       298 GLIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             CeEEEEECCCCEEEeCEEEECCCCCcC
Confidence            666777788888999999999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.63  E-value=0.00023  Score=63.67  Aligned_cols=94  Identities=21%  Similarity=0.339  Sum_probs=55.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   88 (275)
                      ..+++|||||+.|+.+|..|. .|.+|+|+++...+..    .    .+..... +....+ ..+++++. ..+..+.  
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~  339 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEA-VTAAFR-AEGIEVLEHTQASQVAHV  339 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHH-HHHHHH-HCCCEEEcCCEEEEEEec
Confidence            468999999999999999998 6999999998543211    0    0000000 000000 01344432 2222332  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      ..  .+.++++ .+.+|.+++|+|..|....
T Consensus       340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence            11  2333333 6899999999999987653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.62  E-value=0.00066  Score=57.99  Aligned_cols=91  Identities=14%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---cCCcchH-----H----HHHHHHHhCCCEEEcCceeeeecCCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIGPKAG-----D----KTRDWLISKKVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~-----~----~~~~~~~~~gv~i~~~~~v~~i~~~~~~  196 (275)
                      +|..|+.+|..|+......+++++...+...-   .....+.     +    .-.+.+.+.|++++.++.|..++..+  
T Consensus        11 gG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id~~~--   88 (396)
T PRK09754         11 GGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDT--   88 (396)
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEECCC--
Confidence            67788999999986555568999987654311   1111010     0    01234566899999999999987543  


Q ss_pred             ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          197 DTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       197 ~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ..+.+.+|+++.+|.+|+|||..|.
T Consensus        89 ~~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         89 RELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             CEEEECCCCEEEcCEEEEccCCCCC
Confidence            3566778889999999999999874

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.61  E-value=0.0002  Score=60.40  Aligned_cols=97  Identities=25%  Similarity=0.364  Sum_probs=65.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeee-Eee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAI-NIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~   88 (275)
                      ...|+++|+|..|+.+|..|. .+.+||+|++++..-.      ..    +.......+..++.  ++++....+. .+.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~l----f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~  282 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RL----FGPSIGQFYEDYYENKGVKFYLGTVVSSLE  282 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hh----hhHHHHHHHHHHHHhcCeEEEEecceeecc
Confidence            568999999999999999998 7899999999885431      11    11111111222222  4555544433 222


Q ss_pred             cC------eEEecCCeEEeCCEEEEccCCCCCCCchH
Q 023957           89 EN------EVLTAEGRRVVYDYLVIATGHKDPVPKTR  119 (275)
Q Consensus        89 ~~------~v~~~~~~~~~~~~lilatG~~~~~~~~~  119 (275)
                      .+      .+.+.+++++.+|-+++.+|..|..+...
T Consensus       283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             cCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence            11      67788999999999999999998876543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.59  E-value=7.5e-05  Score=66.09  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             HHHHhCCCEEEcCceeeeecCCCCCce-EE--cCCC---c-EEeecEEEEcCCCCCCchhhccccc
Q 023957          172 DWLISKKVDVKLGERVNLDSVSEGSDT-YL--TSTG---D-TINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       172 ~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~--~~~g---~-~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ..++..++.+.+++.|+.+..+++... +.  ..++   + ...++.||+|+|....+.++..++.
T Consensus       211 ~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi  276 (542)
T COG2303         211 PALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI  276 (542)
T ss_pred             hHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence            345666799999999999988776544 33  2333   2 3578899999999877777777664

>PRK14727 putative mercuric reductase; Provisional

Probab=97.59  E-value=0.00029  Score=61.70  Aligned_cols=93  Identities=18%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   88 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++...+..    .    .+..... +....+ ..+++++. ..+..+.  
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~~~-l~~~L~-~~GV~i~~~~~V~~i~~~  257 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLGET-LTACFE-KEGIEVLNNTQASLVEHD  257 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHHHH-HHHHHH-hCCCEEEcCcEEEEEEEe
Confidence            468999999999999999998 6999999987542211    0    0000000 000000 01344432 2222232  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ..  .+..+++ .+.+|.+++|+|..|...
T Consensus       258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        258 DNGFVLTTGHG-ELRAEKLLISTGRHANTH  286 (479)
T ss_pred             CCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence            12  3334444 688999999999998765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.54  E-value=0.00054  Score=59.48  Aligned_cols=95  Identities=20%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc------C----cCCc---chHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E----FIGP---KAGDKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~----~~~~---~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      +|..|+.+|..++...+..+++++++.+.+.      +    ....   ++.....+.+++.|++++.++.|..++.+++
T Consensus         8 gG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~   87 (444)
T PRK09564          8 GTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK   87 (444)
T ss_pred             CcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC
Confidence            6778889998888654567999999887531      1    1101   1122223557778999999999999987666


Q ss_pred             CceEEc-CCCcEEe--ecEEEEcCCCCCCch
Q 023957          196 SDTYLT-STGDTIN--ADCHFLCTGKPVGSD  223 (275)
Q Consensus       196 ~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~  223 (275)
                      .+.+.. .+++.+.  +|.+|+|+|.+|..+
T Consensus        88 ~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         88 TITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            555543 2355666  999999999987543

>PLN02546 glutathione reductase

Probab=97.53  E-value=0.00024  Score=63.02  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=55.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||+.|+.+|..|. .|.+|+|+++.+.+....       ..... ..+..... ..+++++.. .+..+.  
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~-------d~~~~-~~l~~~L~-~~GV~i~~~~~v~~i~~~  322 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF-------DEEVR-DFVAEQMS-LRGIEFHTEESPQAIIKS  322 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc-------CHHHH-HHHHHHHH-HCCcEEEeCCEEEEEEEc
Confidence            478999999999999999997 699999999877543110       00000 00000000 013444322 222222  


Q ss_pred             -cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 -~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                       ..  .+..+++....+|.+++++|..|...
T Consensus       323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             CCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence             11  23334444455899999999998765

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.53  E-value=0.00013  Score=58.82  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+||+|||+|.|||-||.+|+ .|.+|+|+|++..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            3589999999999999999999 7999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.50  E-value=0.00033  Score=60.70  Aligned_cols=94  Identities=19%  Similarity=0.313  Sum_probs=56.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   89 (275)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+....       ..... ..+....+ ..+++++. ..+..+.. 
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~-~~l~~~l~-~~gV~v~~~~~v~~i~~~  228 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-------DRDIA-DNIATILR-DQGVDIILNAHVERISHH  228 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-------CHHHH-HHHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence            468999999999999999998 699999999977543110       00000 00000000 01444432 22333322 


Q ss_pred             -C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 -~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                       .  .+..+++ .+.+|.+++|+|..|...
T Consensus       229 ~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        229 ENQVQVHSEHA-QLAVDALLIASGRQPATA  257 (441)
T ss_pred             CCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence             2  2333333 588999999999998764

>PLN02785 Protein HOTHEAD

Probab=97.49  E-value=0.00012  Score=65.25  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ..||++|||||.||+.+|.+|..+.+|+|||++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence            35999999999999999999987799999999874

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.49  E-value=0.00037  Score=61.01  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++...+.    .+    +............+  .+++++... +..+.  
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~  249 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----GF----DQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI  249 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc----cc----CHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence            468999999999999999998 699999998742221    00    00000000000000  134443221 11221  


Q ss_pred             -cC-eEEecCC---eEEeCCEEEEccCCCCCCCc
Q 023957           89 -EN-EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 -~~-~v~~~~~---~~~~~~~lilatG~~~~~~~  117 (275)
                       .. .+...++   .++.+|.+++|+|..|....
T Consensus       250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence             11 3333333   47899999999999987653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.40  E-value=0.00049  Score=57.00  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=31.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ..+|+|||+|..|+.+|..|+ .+.+|+++++.+.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            468999999999999999998 58999999997754

>TIGR01810 betA choline dehydrogenase

Probab=97.39  E-value=0.00017  Score=64.07  Aligned_cols=59  Identities=12%  Similarity=0.014  Sum_probs=41.3

Q ss_pred             HHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC-Cc---EEeecEEEEcCCCCCCchhhccccc
Q 023957          172 DWLISKKVDVKLGERVNLDSVSEGSD-TYLTST-GD---TINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       172 ~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~-g~---~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      ...+..|++|+.++.|++|..+++.. .|++.+ ++   .+.++.||+|+|..-.+.++..+|+
T Consensus       202 ~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI  265 (532)
T TIGR01810       202 PAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI  265 (532)
T ss_pred             hhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence            33335689999999999998765433 355433 22   3589999999998666677766654

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.35  E-value=0.00011  Score=60.94  Aligned_cols=90  Identities=27%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VN   76 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   76 (275)
                      -.++||||||.|+.+|.+|+               +..+|+++|+.+++-.           .+..+......+.+  .+
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-----------mFdkrl~~yae~~f~~~~  287 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-----------MFDKRLVEYAENQFVRDG  287 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----------HHHHHHHHHHHHHhhhcc
Confidence            47999999999999999885               1358999999885420           01111111111111  13


Q ss_pred             cEEEEe-eeeEeecCeEEecCC----eEEeCCEEEEccCCCCC
Q 023957           77 GRIVAS-PAINITENEVLTAEG----RRVVYDYLVIATGHKDP  114 (275)
Q Consensus        77 ~~~~~~-~~~~~~~~~v~~~~~----~~~~~~~lilatG~~~~  114 (275)
                      +.+... .+..++..++.....    .+++|.-++-+||..|.
T Consensus       288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence            344333 344555555544433    57899999999998754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.29  E-value=0.00073  Score=61.08  Aligned_cols=36  Identities=11%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+|+|||||+.|+.+|..|. .|.+|+++|+.+.+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            468999999999999998887 699999999987653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.12  E-value=0.0004  Score=57.05  Aligned_cols=99  Identities=15%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEE-EeeeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   89 (275)
                      -+.+.+|||||..||..+---. .|.+||++|-.+.++..   +...+...+......      .++.|. ...+.....
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---mD~Eisk~~qr~L~k------QgikF~l~tkv~~a~~  280 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---MDGEISKAFQRVLQK------QGIKFKLGTKVTSATR  280 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---cCHHHHHHHHHHHHh------cCceeEeccEEEEeec
Confidence            3578999999999999996555 69999999988887632   111111111100011      122332 122222221


Q ss_pred             C-----eEEecC-----CeEEeCCEEEEccCCCCCCCchH
Q 023957           90 N-----EVLTAE-----GRRVVYDYLVIATGHKDPVPKTR  119 (275)
Q Consensus        90 ~-----~v~~~~-----~~~~~~~~lilatG~~~~~~~~~  119 (275)
                      +     .+...+     ..++++|.+.+++|-.|+..+..
T Consensus       281 ~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLg  320 (506)
T KOG1335|consen  281 NGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLG  320 (506)
T ss_pred             cCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCC
Confidence            1     233222     24688999999999999987754

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.09  E-value=0.00061  Score=59.81  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~   47 (275)
                      ...||.+|||||.||...|..|.  +..+|+|+|++...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            35699999999999999999998  46999999998765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.08  E-value=0.0044  Score=53.90  Aligned_cols=58  Identities=14%  Similarity=0.113  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHhCCCE--EEcCceeeeecCCCCCceEEcCCC--c--EEeecEEEEcCCC--CCCc
Q 023957          165 KAGDKTRDWLISKKVD--VKLGERVNLDSVSEGSDTYLTSTG--D--TINADCHFLCTGK--PVGS  222 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~~~~d~vv~a~G~--~~~~  222 (275)
                      ++.+.+.+..+..|++  |.++++|++++..++.+.|.+.++  .  +..+|.||+|+|.  .|+.
T Consensus       112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~  177 (461)
T PLN02172        112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNV  177 (461)
T ss_pred             HHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcC
Confidence            3555666777778888  889999999987766777776532  2  4679999999994  5543

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.01  E-value=0.00019  Score=54.07  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE   48 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~   48 (275)
                      .||+|||+|-+||++||...   +..+|.+||..-..|
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            69999999999999999986   489999999876554

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.00  E-value=0.00077  Score=55.93  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPK   44 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~   44 (275)
                      .+||+||||||+|++.|..|+     +..+|+++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            589999999999999999997     26799999987

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.99  E-value=0.0046  Score=51.95  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~   46 (275)
                      ..+|+|||+|+.|+.+|..|. .|.+ |+|+++...
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            368999999999999998886 6886 999997653

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.98  E-value=0.00036  Score=59.79  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..+||+|||||-.|..||+-.+ +|+++.++|++....+.+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            4599999999999999999998 999999999998765443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.85  E-value=0.0052  Score=53.79  Aligned_cols=34  Identities=38%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      .++|+|||||..|+-+|..+. .|. +|++++....
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~  316 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM  316 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence            478999999999999997765 565 7898876654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0015  Score=53.15  Aligned_cols=35  Identities=43%  Similarity=0.544  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+||+|||||.+|+.||..|+ --..|+++|=.+.
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            4589999999999999999998 3556899986554

>PRK12831 putative oxidoreductase; Provisional

Probab=96.82  E-value=0.007  Score=52.82  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||||..|+-+|..|. .|.+|+++++...
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            3479999999999999999987 5999999998654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.76  E-value=0.0054  Score=53.32  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|||||..|+-+|..|. .|.+|++++++..
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            468999999999999999987 6999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.73  E-value=0.002  Score=55.15  Aligned_cols=57  Identities=11%  Similarity=-0.085  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ++.|.+-+...-.|..++++..|.++..++++ ..-+..+|+.+.|+.||....+.|.
T Consensus       233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~  290 (438)
T PF00996_consen  233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE  290 (438)
T ss_dssp             HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred             cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence            67777777777789999999999998774433 2222358889999999998887763

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.70  E-value=0.013  Score=52.37  Aligned_cols=90  Identities=17%  Similarity=0.127  Sum_probs=62.9

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcc--------c---Cc----CCcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRL--------L---EF----IGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  193 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~--------~---~~----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  193 (275)
                      +|+.|+..|..+.  ..+.++.++++...-        .   +.    ....+.+.+.+.+++.|++++ +.+|..+..+
T Consensus        12 gGpAGL~AA~~la--r~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~   88 (555)
T TIGR03143        12 GGPAGLSAGIYAG--RAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD   88 (555)
T ss_pred             CCHHHHHHHHHHH--HCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec
Confidence            6778888888887  567889888865310        0   00    112345666677778899986 6778888765


Q ss_pred             CCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          194 EGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       194 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      ++...+.+.++ .+.+|.+|+|+|..|..
T Consensus        89 ~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        89 GDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence            54455666666 58999999999998754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.69  E-value=0.0024  Score=46.96  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.|||||..|.++|..|+ +|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5899999999999999998 799999999876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.0024  Score=49.92  Aligned_cols=33  Identities=36%  Similarity=0.587  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++++|||+|..|.+.|..|. .|++|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            47999999999999999998 6999999999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.65  E-value=0.0026  Score=55.83  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|||+|.+|+++|..|+ +|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999987 799999999765

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.63  E-value=0.01  Score=49.91  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=48.7

Q ss_pred             CCcccC--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC-cEEeecEEEEcCCCCC
Q 023957          155 GSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV  220 (275)
Q Consensus       155 ~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~  220 (275)
                      ..++.|  ....++.+.+...+++.||+++++++|+.|+  ++...+.+.++ ..+.||.||+|+|-.+
T Consensus        75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            344444  3445789999999999999999999999993  33456665433 4699999999999764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.59  E-value=0.013  Score=49.29  Aligned_cols=52  Identities=27%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCC
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +.+.+.+.+++ .+++++ ..+|+++..+++. ..|.+.+|+.+.+|.||+|+|.
T Consensus        97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            44556677776 578886 4678888765554 4588999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.0023  Score=51.71  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..|-|||||.||..|||.++ +|..|.++|-++.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            57999999999999999998 7999999997765

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.58  E-value=0.014  Score=51.68  Aligned_cols=35  Identities=37%  Similarity=0.518  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~   46 (275)
                      ..++|+|||+|.+|.-.|.+|.+ ..+|++.-|+..
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            35899999999999999999984 667887777654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.56  E-value=0.0038  Score=53.07  Aligned_cols=56  Identities=13%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++ |++++.+++|.+++.+++.+.+.+.+|+.+.||.||+|+|...
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            3577788888888 9999999999999877777778888888799999999999765

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.0031  Score=55.07  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +|+|||.|++|+++|..|. +|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999987 79999999988754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.43  E-value=0.0046  Score=46.55  Aligned_cols=32  Identities=34%  Similarity=0.438  Sum_probs=27.0

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|.|||+|..|...|..+. .|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            5899999999999998887 7999999999765

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.42  E-value=0.0029  Score=47.80  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..||.+|..|+ .|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            47999999999999999998 7999999998775

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0045  Score=50.36  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+|.|||+|..|...|..+. .|++|+++|+++.
T Consensus         4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3458999999999999998887 7999999998875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.32  E-value=0.0053  Score=41.59  Aligned_cols=34  Identities=44%  Similarity=0.625  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||||..|..-+..|. .|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3579999999999999998887 699999998764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.28  E-value=0.0031  Score=48.24  Aligned_cols=133  Identities=29%  Similarity=0.352  Sum_probs=92.2

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---cCC----------c-chH--H--HHHHHHHhCCCEEEcCceeeee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIG----------P-KAG--D--KTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~----------~-~~~--~--~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                      +|+.|+.+|..+.  ..+.++.++...+....   ...          . ...  .  .+.+.++..+++++.+.++.++
T Consensus         7 gG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   84 (201)
T PF07992_consen    7 GGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSI   84 (201)
T ss_dssp             SSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEE
T ss_pred             cHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccccccc
Confidence            6888999999998  67999999976553210   000          0 001  0  3333446689999989999999


Q ss_pred             cCCCCC-----ceE---EcCCCcEEeecEEEEcCCCCCCchhhcc-----------------------------------
Q 023957          191 SVSEGS-----DTY---LTSTGDTINADCHFLCTGKPVGSDWLKD-----------------------------------  227 (275)
Q Consensus       191 ~~~~~~-----~~v---~~~~g~~~~~d~vv~a~G~~~~~~~~~~-----------------------------------  227 (275)
                      ....+.     ..+   ...++.++.+|.+|+|+|..|....++.                                   
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~  164 (201)
T PF07992_consen   85 DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLA  164 (201)
T ss_dssp             EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTST
T ss_pred             cccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccc
Confidence            776652     122   3456678999999999997754221110                                   


Q ss_pred             cccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          228 TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       228 ~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      ...+++++++|++.||+++|+ +.|+||++|||++.+
T Consensus       165 ~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  165 EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY  200 (201)
T ss_dssp             HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred             ccccccccccccccccccccc-ccccccccccccccC
Confidence            123446778999999999999 899999999999876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.26  E-value=0.012  Score=48.93  Aligned_cols=56  Identities=16%  Similarity=0.082  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|+.+..+++.+ .+.+.+| .+.||.||+|+|...
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            4678888889999999999999999998766644 3666666 699999999999764

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.25  E-value=0.0089  Score=53.55  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             HHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC
Q 023957          171 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG  250 (275)
Q Consensus       171 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~  250 (275)
                      .+..+++||+++.+.++..|...  ...|.++.|.++.+|.+|+|||+.|....++...+      .+ +.+   +|  +
T Consensus        66 ~dwy~~~~i~L~~~~~v~~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~------~~-v~~---~R--~  131 (793)
T COG1251          66 NDWYEENGITLYTGEKVIQIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDL------PG-VFV---YR--T  131 (793)
T ss_pred             hhhHHHcCcEEEcCCeeEEeccC--cceEEccCCcEeecceeEEecCccccccCCCCCCC------CC-eeE---Ee--c
Confidence            45668899999999999999754  44588889999999999999999986443433322      11 111   23  2


Q ss_pred             CCCeEEeccccCCCC
Q 023957          251 QKNIFAIGDITDIRV  265 (275)
Q Consensus       251 ~~~v~a~Gd~~~~~~  265 (275)
                      ..++++.++|+....
T Consensus       132 i~D~~am~~~ar~~~  146 (793)
T COG1251         132 IDDVEAMLDCARNKK  146 (793)
T ss_pred             HHHHHHHHHHHhccC
Confidence            566677777754443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.25  E-value=0.0091  Score=45.92  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|||||.+|...+..|. .|.+|+|++++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            479999999999999998886 6999999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.21  E-value=0.016  Score=54.88  Aligned_cols=83  Identities=17%  Similarity=-0.036  Sum_probs=61.8

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..|.  ..|.+++++++.+.+..         ..+.++.+...+.+++.|++++.|+.+-        ..+
T Consensus       314 sGPAGLsaA~~La--r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--------~di  383 (944)
T PRK12779        314 SGPSGLINAYLLA--VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--------KTA  383 (944)
T ss_pred             CCHHHHHHHHHHH--HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--------cEE
Confidence            8999999999999  67999999998764322         1233456666677888999999988652        225


Q ss_pred             EcCCCcEEeecEEEEcCCCC-CC
Q 023957          200 LTSTGDTINADCHFLCTGKP-VG  221 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~-~~  221 (275)
                      .+++.....+|.||+|+|.. |.
T Consensus       384 t~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        384 TLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             eHHHhccccCCEEEEeCCCCCCC
Confidence            55555556799999999984 53

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.043  Score=44.96  Aligned_cols=90  Identities=21%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             CCcchhhHHHHHhhhCCCCE-EEEEeCCCc---------------ccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957          129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSR---------------LLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  191 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  191 (275)
                      +|+.|+..|..+.  +.+.+ +.++.....               +.. ...+++.+.+.+..+..|+++.. ..|..++
T Consensus        11 ~GPAGl~AAiya~--r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~   87 (305)
T COG0492          11 GGPAGLTAAIYAA--RAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVE   87 (305)
T ss_pred             CCHHHHHHHHHHH--HcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEe
Confidence            5666777777776  34444 344433210               111 23456677777777788999988 7788887


Q ss_pred             CCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          192 VSEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       192 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      ..++.+.|.+.+|+ ++|+.||+|+|..+..
T Consensus        88 ~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          88 LEGGPFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             ecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence            65556678888887 9999999999987654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.14  E-value=0.012  Score=43.19  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ..++|+|||||..|..-|..|. .|++|+||+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            4589999999999999998886 79999999643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.14  E-value=0.0088  Score=52.08  Aligned_cols=33  Identities=48%  Similarity=0.728  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|+|+|.+|+++|..|. .|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478999999999999999997 799999999875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.09  E-value=0.0096  Score=49.16  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||+|-.|.+.|..|+ .|++|+++.+++
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3468999999999999999998 599999999865

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.03  E-value=0.013  Score=45.04  Aligned_cols=34  Identities=38%  Similarity=0.663  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||||-.|...|..|. .|.+|+|++++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4579999999999999998886 699999998753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.97  E-value=0.0088  Score=49.25  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            47999999999999999987 7999999999864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.82  E-value=0.019  Score=40.97  Aligned_cols=34  Identities=41%  Similarity=0.628  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~   45 (275)
                      ...+++|||+|-+|-++++.|. .|.+ ++|+.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            4689999999999999999998 6876 99998864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.80  E-value=0.052  Score=51.45  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-------c--CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------F--IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..|+  ..|.+++++++.+.+..       .  ...+......+.+++.|++++.++.+ .+         
T Consensus       547 gGPAGLsAA~~La--r~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di---------  614 (1019)
T PRK09853        547 AGPAGLAAAYFLA--RAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL---------  614 (1019)
T ss_pred             CCHHHHHHHHHHH--HcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE---------
Confidence            8889999999998  56889999998765322       1  12234445556677889999999877 22         


Q ss_pred             EcCCCcEEeecEEEEcCCCCC
Q 023957          200 LTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ...+.+...+|.||+|+|..+
T Consensus       615 ~le~L~~~gYDaVILATGA~~  635 (1019)
T PRK09853        615 TVEQLKNEGYDYVVVAIGADK  635 (1019)
T ss_pred             EhhhheeccCCEEEECcCCCC
Confidence            222334456899999999875

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.78  E-value=0.014  Score=47.68  Aligned_cols=34  Identities=35%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            357999999999999999997 6999999998754

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.77  E-value=0.016  Score=43.18  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.+|+|+|+|.+|..||..|. .|.+++++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            479999999999999999998 699999999765

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.75  E-value=0.015  Score=42.33  Aligned_cols=30  Identities=40%  Similarity=0.628  Sum_probs=27.8

Q ss_pred             EEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      |+|+|+|-.|...|+.|+ .|++|+++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            789999999999999997 699999999866

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.67  E-value=0.01  Score=48.46  Aligned_cols=100  Identities=19%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEe-
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINI-   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-   87 (275)
                      +.+++++|||||..++..|--++ .|.++.++=|.+.+-..   +..++.....++...      .++++...+ ...+ 
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~---FD~~i~~~v~~~~~~------~ginvh~~s~~~~v~  257 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG---FDEMISDLVTEHLEG------RGINVHKNSSVTKVI  257 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc---hhHHHHHHHHHHhhh------cceeecccccceeee
Confidence            34689999999999999997776 79999999887764311   111111111111000      122332111 1111 


Q ss_pred             ---ec-CeEEecCCeEEeCCEEEEccCCCCCCCchH
Q 023957           88 ---TE-NEVLTAEGRRVVYDYLVIATGHKDPVPKTR  119 (275)
Q Consensus        88 ---~~-~~v~~~~~~~~~~~~lilatG~~~~~~~~~  119 (275)
                         +. ..+....+.....|.++.|+|-.|......
T Consensus       258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~  293 (478)
T KOG0405|consen  258 KTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLN  293 (478)
T ss_pred             ecCCCceEEEEeccccccccEEEEEecCCCCccccc
Confidence               11 134444554556899999999998876644

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.66  E-value=0.015  Score=49.97  Aligned_cols=54  Identities=19%  Similarity=0.081  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      +...+....+..|.+|+++++|++|+.+++.+.+.+.+|+++.||.||+|++..
T Consensus       211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  264 (450)
T PF01593_consen  211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS  264 (450)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred             hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence            344455555556789999999999999998899999999999999999998743

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.64  E-value=0.015  Score=46.52  Aligned_cols=51  Identities=22%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  227 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~  227 (275)
                      +.+...+.+.+.++|+++.. .+|.++++-.           .-++|.||.|+|... ..+..+
T Consensus       151 ~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~-----------~~~~DVivNCtGL~a-~~L~gD  201 (342)
T KOG3923|consen  151 PKYLPYLKKRLTENGVEFVQ-RRVESLEEVA-----------RPEYDVIVNCTGLGA-GKLAGD  201 (342)
T ss_pred             hhhhHHHHHHHHhcCcEEEE-eeeccHHHhc-----------cCCCcEEEECCcccc-ccccCC
Confidence            35788899999999999964 6677775321           145899999999876 334433

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.61  E-value=0.015  Score=48.60  Aligned_cols=36  Identities=36%  Similarity=0.457  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~   47 (275)
                      ..++|+|||||.++..++..|. ++  .+|+++-|...+
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            4579999999999999999986 33  589999987753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.61  E-value=0.2  Score=43.33  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-------------------------------------c---C--C-cc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------------------------------------F---I--G-PK  165 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------------------------------------~---~--~-~~  165 (275)
                      +|++|+..|..+.  ..|.+++++++.+.+..                                     .   +  + .+
T Consensus        14 AG~sGL~~ar~l~--~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e   91 (448)
T KOG1399|consen   14 AGPAGLAAARELL--REGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHRE   91 (448)
T ss_pred             cchHHHHHHHHHH--HCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHH
Confidence            6777888887777  45777777776544310                                     0   0  1 14


Q ss_pred             hHHHHHHHHHhCCC--EEEcCceeeeecCCC-CCceEEcCCC----cEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~  219 (275)
                      +.+.+..+++..++  .|..+++|..++..+ +.+.|.+.+.    ++..+|.|++|+|.-
T Consensus        92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~  152 (448)
T KOG1399|consen   92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY  152 (448)
T ss_pred             HHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence            56667777777775  688899888888777 5777876543    478899999999965

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.60  E-value=0.068  Score=48.88  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..+|+|||||..|+-+|..|. .|. +|+|++++..
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~  358 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR  358 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999887 575 6999987753

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.59  E-value=0.011  Score=50.78  Aligned_cols=28  Identities=25%  Similarity=0.249  Sum_probs=25.6

Q ss_pred             hHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           23 VAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        23 ~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      +|||+||++|+ .|++|+|+|+++.+|+.
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr   29 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR   29 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence            58999999998 69999999999999854

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=0.015  Score=48.43  Aligned_cols=44  Identities=34%  Similarity=0.570  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR   55 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~   55 (275)
                      ..+||+|||-|..=...|.+.. .|.+|+-+|+++.+|+.|..+.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS   51 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS   51 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence            3589999999999888888777 5999999999999999987543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.58  E-value=0.014  Score=51.07  Aligned_cols=34  Identities=32%  Similarity=0.415  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            579999999999999999998 6999999998763

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.58  E-value=0.033  Score=48.63  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..+.  ..+.+++++++.+.+..         ....++.....+.+++.|++++.++.+...        +
T Consensus       148 gGpaGl~aA~~l~--~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~--------v  217 (457)
T PRK11749        148 AGPAGLTAAHRLA--RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRD--------I  217 (457)
T ss_pred             CCHHHHHHHHHHH--hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCc--------c
Confidence            7888999999888  56889999998765421         123345566667788899999999876221        2


Q ss_pred             EcCCCcEEeecEEEEcCCCC
Q 023957          200 LTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.. +.+|.||+|+|..
T Consensus       218 ~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        218 TLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             CHHHHH-hhCCEEEEccCCC
Confidence            222333 7799999999985

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.56  E-value=0.021  Score=47.05  Aligned_cols=34  Identities=32%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..+. .|++|+++|..+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            367999999999999998887 7999999998764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.53  E-value=0.017  Score=47.10  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            47999999999999999987 6999999998764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.50  E-value=0.018  Score=46.86  Aligned_cols=33  Identities=39%  Similarity=0.470  Sum_probs=29.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|+ .|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            57999999999999999987 6999999998753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.43  E-value=0.022  Score=47.64  Aligned_cols=32  Identities=38%  Similarity=0.577  Sum_probs=29.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||+|..|.+.|..|. .|++|+++++.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            57999999999999999997 699999999854

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.43  E-value=0.03  Score=41.57  Aligned_cols=33  Identities=36%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCC
Q 023957           12 KNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        12 ~~~~vvIIGgG~-aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ..++|+|||+|- +|..+|..|. +|.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            458999999996 6999999997 68899999976

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.40  E-value=0.022  Score=48.17  Aligned_cols=33  Identities=39%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            468999999999999999998 699999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.40  E-value=0.024  Score=46.75  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999999999999999987 6999999998653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.37  E-value=0.1  Score=47.77  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~   47 (275)
                      .++|+|||||..|+-+|..+. .|. +|+++.++...
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~  504 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEA  504 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCC
Confidence            468999999999999998765 676 69999876543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.31  E-value=0.025  Score=48.27  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|+|.|+.|+.+|..++ .|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            478999999999999999998 6999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.27  E-value=0.027  Score=46.87  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|.|||+|..|...|..|. .|++|+++++++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            458999999999999999997 6999999999653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.024  Score=46.24  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            57999999999999999887 6999999998764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.21  E-value=0.03  Score=45.84  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            357999999999999999987 6999999998763

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.18  E-value=0.029  Score=46.14  Aligned_cols=32  Identities=31%  Similarity=0.293  Sum_probs=29.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|||+|-.|...|..|. .|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            57999999999999999998 589999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.18  E-value=0.03  Score=46.12  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=28.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      +|.|||+|..|.++|+.|. +|  .+++++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            7999999999999999987 57  57999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.18  E-value=0.045  Score=47.00  Aligned_cols=51  Identities=33%  Similarity=0.476  Sum_probs=40.9

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCcEEeecEEEEcCCC
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCHFLCTGK  218 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~~~~d~vv~a~G~  218 (275)
                      +.+.+.+++.|.+|+++++|++|+.+++++.+.. .+|+.+.||.||+++..
T Consensus       201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPP  252 (419)
T ss_pred             HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCH
Confidence            4467778888999999999999998777655433 46778999999999774

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.17  E-value=0.028  Score=46.16  Aligned_cols=31  Identities=29%  Similarity=0.609  Sum_probs=28.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|+|||+|-.|...|..|. .|++|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            6999999999999999998 699999999854

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.14  E-value=0.037  Score=45.47  Aligned_cols=33  Identities=36%  Similarity=0.488  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ++|.|||+|..|..+|+.|+ +|+ +|+++|..+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            58999999999999999987 565 8999998554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.12  E-value=0.026  Score=47.09  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..||..|.-|+ .|++|+.+|..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            47999999999999999998 6999999997653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.11  E-value=0.078  Score=46.63  Aligned_cols=74  Identities=19%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  208 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  208 (275)
                      +|.+|++.|..|.  ..|.+++++++.+.       .....+.+.+++.|++++.+..+.                ....
T Consensus        24 ~G~~G~~~A~~L~--~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------------~~~~   78 (480)
T PRK01438         24 LGVSGFAAADALL--ELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------------LPED   78 (480)
T ss_pred             CCHHHHHHHHHHH--HCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc----------------ccCC
Confidence            6778999888887  56889999876542       234455666888899998876543                1245


Q ss_pred             ecEEEEcCCCCCCchhhcc
Q 023957          209 ADCHFLCTGKPVGSDWLKD  227 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~  227 (275)
                      +|.||+++|..|+.+++..
T Consensus        79 ~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         79 TDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             CCEEEECCCcCCCCHHHHH
Confidence            8999999999998876433

>PRK04148 hypothetical protein; Provisional

Probab=95.08  E-value=0.026  Score=39.91  Aligned_cols=33  Identities=42%  Similarity=0.427  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++++||-| .|.+.|..|+ .|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3689999999 9998898887 6999999998875

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.07  E-value=0.036  Score=46.96  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             hhhcccCCCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957            5 RQQQSEGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus         5 ~~~~~~~~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++.++...++|+|.|| |+.|..++..|. +|++|+.+++..
T Consensus        13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34446667789999999 999999999997 799999999754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.06  E-value=0.045  Score=45.27  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~   47 (275)
                      ...+|.|||+|..|.++|+.+. +|+ +++|+|.++..
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            3468999999999999999887 675 89999987753

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.03  E-value=0.032  Score=45.80  Aligned_cols=29  Identities=31%  Similarity=0.516  Sum_probs=27.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDP   43 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~   43 (275)
                      +|+|||+|..|...|..|+ .|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            6999999999999999998 5999999998

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.97  E-value=0.065  Score=49.90  Aligned_cols=83  Identities=19%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..++  ..+.+++++++.+.+..         ..+.++.+...+.+++.|++++.++.+..        .+
T Consensus       439 aGpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--------~v  508 (752)
T PRK12778        439 SGPAGLSFAGDLA--KRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--------TI  508 (752)
T ss_pred             cCHHHHHHHHHHH--HCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC--------cC
Confidence            7888999999998  56899999997553221         11234555555667889999999886521        13


Q ss_pred             EcCCCcEEeecEEEEcCCC-CCC
Q 023957          200 LTSTGDTINADCHFLCTGK-PVG  221 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~-~~~  221 (275)
                      .+.+.....+|.||+|+|. .|.
T Consensus       509 ~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        509 TIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             CHHHHhhcCCCEEEEeCCCCCCC
Confidence            3333345669999999998 454

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.042  Score=47.86  Aligned_cols=33  Identities=42%  Similarity=0.538  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.|+|+|+|.+|+++|..|+ .|++|++.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999997 799999999765

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=94.91  E-value=0.036  Score=46.54  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhhc-----CCcEE-EEcCCCCccccccccccccCCcccccccccccccccccEEEEeeee-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQF-----SADVT-LIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAI-   85 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~-----g~~v~-vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (275)
                      ...|.|||+|+-|...|+.|++     |-+|. ||+.+...+-   -++..+    ..........  .++.+.....+ 
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---iLPeyl----s~wt~ekir~--~GV~V~pna~v~  417 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---ILPEYL----SQWTIEKIRK--GGVDVRPNAKVE  417 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---hhHHHH----HHHHHHHHHh--cCceeccchhhh
Confidence            4789999999999999999972     44544 3332222110   000000    0000000000  13333221111 


Q ss_pred             Ee----ecCeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           86 NI----TENEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        86 ~~----~~~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+    .+-.+.+++|.++..|.+|+|+|..|+..
T Consensus       418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e  452 (659)
T KOG1346|consen  418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE  452 (659)
T ss_pred             hhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence            11    12267788999999999999999998753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.034  Score=45.20  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|.+.|..|. .|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            47999999999999999987 6999999998764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.90  E-value=0.026  Score=45.49  Aligned_cols=33  Identities=45%  Similarity=0.658  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .-+|+|||||.+|.-+|.-+. .|.+|+++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            468999999999999998776 799999999873

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.87  E-value=0.056  Score=44.62  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      +.+.+|.|||+|..|.++|+.|. .+.  ++.|+|.+..
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            44579999999999999999987 565  7999998654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.85  E-value=0.037  Score=47.56  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=30.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|+.+|..|+ .|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            57999999999999999998 6999999998664

>PLN02852 ferredoxin-NADP+ reductase

Probab=94.84  E-value=0.096  Score=45.95  Aligned_cols=83  Identities=11%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc----C------CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----I------GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|+.|+..|..|.....+.+|+++++.+.....    .      ...+...+.+.++..+++++.|..+-.        .
T Consensus        34 aGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~--------d  105 (491)
T PLN02852         34 SGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR--------D  105 (491)
T ss_pred             ccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc--------c
Confidence            788899999999743478999999998765321    1      112334455667778899988876621        1


Q ss_pred             EEcCCCcEEeecEEEEcCCCCC
Q 023957          199 YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      +.+++.+ ..+|.||+|+|..+
T Consensus       106 vtl~~L~-~~yDaVIlAtGa~~  126 (491)
T PLN02852        106 VSLSELR-DLYHVVVLAYGAES  126 (491)
T ss_pred             ccHHHHh-hhCCEEEEecCCCC
Confidence            3333333 46999999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=94.84  E-value=0.23  Score=42.16  Aligned_cols=88  Identities=19%  Similarity=0.233  Sum_probs=55.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-----cCCcchH------------------------------------
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------------  167 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~~------------------------------------  167 (275)
                      +|..|+.+|..|....++.++.++++.+.+.+     ....++.                                    
T Consensus         7 aG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~~Y~~I   86 (370)
T TIGR01789         7 GGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKTAYRSM   86 (370)
T ss_pred             ccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCCCceEE
Confidence            67778888888875445888998888764322     1111111                                    


Q ss_pred             --HHHHHH-HHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          168 --DKTRDW-LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       168 --~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                        ..+.+. +++.+..+..+++|.+++  .+.  +++.+|+++.||.||.|.|..+
T Consensus        87 ~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        87 TSTRFHEGLLQAFPEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             EHHHHHHHHHHhhcccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence              011122 122233367788888884  233  4447888999999999999765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.81  E-value=0.068  Score=42.09  Aligned_cols=88  Identities=22%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcC--------ce---eeeecCCCCCc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG--------ER---VNLDSVSEGSD  197 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~--------~~---v~~i~~~~~~~  197 (275)
                      ||..|+.+|..|+...|..++.++...+..-.   -.-.+.+.+++++..++=...        .-   |..++  ...-
T Consensus         7 ggiagvscaeqla~~~psa~illitass~vks---vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~--s~eh   81 (334)
T KOG2755|consen    7 GGIAGVSCAEQLAQLEPSAEILLITASSFVKS---VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD--SSEH   81 (334)
T ss_pred             CccccccHHHHHHhhCCCCcEEEEeccHHHHH---HhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc--cccc
Confidence            67788999999999899999999987764311   012333444554443321110        01   22222  2233


Q ss_pred             eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          198 TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       198 ~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      -+++.+|.++.++.+++|+|++|.
T Consensus        82 ci~t~~g~~~ky~kKOG~tg~kPk  105 (334)
T KOG2755|consen   82 CIHTQNGEKLKYFKLCLCTGYKPK  105 (334)
T ss_pred             eEEecCCceeeEEEEEEecCCCcc
Confidence            478899999999999999999984

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.67  E-value=0.04  Score=46.89  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=28.6

Q ss_pred             eEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      +|.|||.|..|+..|..++.|++|+++|+++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence            69999999999999977778999999998654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.66  E-value=0.06  Score=46.87  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|+|.|.+|+++|..|+ +|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999999999999999998 7999999997654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.60  E-value=0.052  Score=44.38  Aligned_cols=34  Identities=32%  Similarity=0.487  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ...+|+|||.|.+|..+|..|+ .|.+|+++++++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999998 699999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.56  E-value=0.045  Score=37.76  Aligned_cols=31  Identities=39%  Similarity=0.506  Sum_probs=26.7

Q ss_pred             EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023957           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~   46 (275)
                      |+|+|.|..|...|..|.+ +.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            7999999999999999985 569999998874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.53  E-value=0.044  Score=47.95  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999998 6999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.53  E-value=0.042  Score=39.22  Aligned_cols=31  Identities=26%  Similarity=0.495  Sum_probs=26.2

Q ss_pred             EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|+|+.+.+.|..++ -|++|+++|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            589999999999999888 6999999998854

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.53  E-value=0.094  Score=45.93  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=57.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-------C--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..++  ..+.+++++++.+.+.       +  ....++.+...+.+++.|++++.++.+...        +
T Consensus       149 ~GpaGl~aA~~l~--~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~  218 (467)
T TIGR01318       149 AGPAGLACADILA--RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--------I  218 (467)
T ss_pred             CCHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--------c
Confidence            8888999999888  5688999998876542       1  123345555667788899999999877321        1


Q ss_pred             EcCCCcEEeecEEEEcCCCCCC
Q 023957          200 LTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ...+ ....+|.||+|+|..+.
T Consensus       219 ~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       219 SLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             CHHH-HHhcCCEEEEEeCCCCC
Confidence            1111 12469999999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.49  E-value=0.05  Score=45.12  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||+|..|...|..|. .|++|+++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999999999999997 689999999865

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.48  E-value=0.092  Score=50.36  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..|+  ..|.+++++++.+.+..         ....++.+...+.+++.|+++++++.+.      ..  +
T Consensus       438 ~GPAGLsaA~~La--~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg------~~--~  507 (1006)
T PRK12775        438 SGPAGLAAAADLV--KYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG------KT--F  507 (1006)
T ss_pred             CCHHHHHHHHHHH--HcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC------Cc--c
Confidence            8889999999998  56899999998765421         1234566667777888999999987541      11  1


Q ss_pred             EcCCC-cEEeecEEEEcCCCC
Q 023957          200 LTSTG-DTINADCHFLCTGKP  219 (275)
Q Consensus       200 ~~~~g-~~~~~d~vv~a~G~~  219 (275)
                      ...+- +...+|.||+|+|..
T Consensus       508 ~~~~l~~~~~yDaViIATGa~  528 (1006)
T PRK12775        508 TVPQLMNDKGFDAVFLGVGAG  528 (1006)
T ss_pred             CHHHHhhccCCCEEEEecCCC
Confidence            11111 124589999999984

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.48  E-value=0.057  Score=45.50  Aligned_cols=33  Identities=36%  Similarity=0.569  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      +++|+|||+|..|..+|..|+ ++ .+|++.+|..
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            368999999999999999987 55 8999999984

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.44  E-value=0.066  Score=44.08  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ++|.|||+|..|...|+.+. .++ +++++|.++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            58999999999999999887 454 9999998654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.41  E-value=0.057  Score=47.56  Aligned_cols=33  Identities=36%  Similarity=0.522  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|+|.|.+|++++..|+ .|.+|++.|.++
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999999999999998887 799999999653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.41  E-value=0.068  Score=46.60  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~   45 (275)
                      .++|+|+|.|.+|.++|..|++|.+|++.|.++
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence            468999999999999999998899999999653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.40  E-value=0.95  Score=39.42  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccC------------------------cC--------CcchHHHHHHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE------------------------FI--------GPKAGDKTRDWLI  175 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~------------------------~~--------~~~~~~~~~~~~~  175 (275)
                      +|.+|+..|..|..  .+.. +.++++......                        .+        .+.+.+.+..+++
T Consensus        16 aG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~   93 (443)
T COG2072          16 AGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLE   93 (443)
T ss_pred             CCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHH
Confidence            66777778888874  3433 777776643210                        00        0125666777777


Q ss_pred             hCCC--EEEcCceeeeec--CCCCCceEEcCCCcE--EeecEEEEcCCCC
Q 023957          176 SKKV--DVKLGERVNLDS--VSEGSDTYLTSTGDT--INADCHFLCTGKP  219 (275)
Q Consensus       176 ~~gv--~i~~~~~v~~i~--~~~~~~~v~~~~g~~--~~~d~vv~a~G~~  219 (275)
                      +.++  ++..++.|..+.  .+.+.+.|.+++|..  +.+|.||+|+|.-
T Consensus        94 ~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~  143 (443)
T COG2072          94 KYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL  143 (443)
T ss_pred             HcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence            7664  344455555444  444567788887765  4599999999974

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.39  E-value=0.077  Score=38.18  Aligned_cols=33  Identities=36%  Similarity=0.511  Sum_probs=28.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~--g~~v~vie~~~~   46 (275)
                      .+|.|||+ |..|.++|+.|. .  ..++.|+|.++.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            47999999 999999999997 3  457999998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=94.35  E-value=0.13  Score=45.34  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-------C--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|..|+..|..|.  ..+.+++++++.+.+.       +  ..+.++.....+.+++.|++++.++.+...        +
T Consensus       151 aG~aGl~aA~~L~--~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~  220 (485)
T TIGR01317       151 SGPAGLAAADQLN--RAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--------I  220 (485)
T ss_pred             CcHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--------c
Confidence            7888999999998  5688999998876542       1  123345555566778899999999987411        1


Q ss_pred             EcCCCcEEeecEEEEcCCCC
Q 023957          200 LTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~  219 (275)
                      . .+.....+|.||+|+|..
T Consensus       221 ~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       221 S-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             C-HHHHHhhCCEEEEccCCC
Confidence            0 011235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.33  E-value=0.066  Score=46.79  Aligned_cols=33  Identities=42%  Similarity=0.522  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|+|.|.+|+++|..|+ .|++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            468999999999999999997 799999999765

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.30  E-value=0.066  Score=45.58  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.|+|+|.|+.|..+|..|+ .|.+|+++|.++
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            3579999999999999999998 699999999766

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.28  E-value=0.061  Score=39.36  Aligned_cols=35  Identities=40%  Similarity=0.551  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.++|+|-|..|-.+|..|+ .|.+|+|.|.++.
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            4578999999999999999998 7999999998773

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.24  E-value=0.054  Score=46.62  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            6999999999999999997 7999999998654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=94.23  E-value=0.69  Score=35.75  Aligned_cols=129  Identities=17%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc-------C-------------------------------CcchHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-------------------------------GPKAGDKT  170 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------~-------------------------------~~~~~~~~  170 (275)
                      +|++|+..|..|+  ..+.++.+++++-.+...       +                               ...+...+
T Consensus        38 aGPsGLtAAyyLA--k~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl  115 (262)
T COG1635          38 AGPSGLTAAYYLA--KAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFASKL  115 (262)
T ss_pred             cCcchHHHHHHHH--hCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHHHHHH
Confidence            8899999999999  568899999876543211       0                               01223333


Q ss_pred             HHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEc------C-----CCcEEeecEEEEcCCCCCC-chhhcccc--ccccc
Q 023957          171 RDWLISKKVDVKLGERVNLDSVSEG-SD-TYLT------S-----TGDTINADCHFLCTGKPVG-SDWLKDTI--LKDSL  234 (275)
Q Consensus       171 ~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~------~-----~g~~~~~d~vv~a~G~~~~-~~~~~~~~--~~~~~  234 (275)
                      ....-+.|.+|+....|.++-..++ ++ .+..      .     |--.++++.||-+||.... ..++.+.+  ++..+
T Consensus       116 ~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~  195 (262)
T COG1635         116 AARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEV  195 (262)
T ss_pred             HHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcccccccc
Confidence            3444567899999999998866555 33 2322      1     2237999999999998653 23332222  11111


Q ss_pred             CCCC--c------eEeCCCccccCCCCeEEecccc
Q 023957          235 DTHG--M------LMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       235 ~~~g--~------i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      ...+  |      +.|+...+  -+|++|++|=.+
T Consensus       196 ~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~  228 (262)
T COG1635         196 PGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAV  228 (262)
T ss_pred             CCCcchhhhHHHHHHHhcccc--ccCCeEeehhhH
Confidence            1111  1      33433344  389999999765

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=94.22  E-value=0.13  Score=45.80  Aligned_cols=70  Identities=11%  Similarity=-0.100  Sum_probs=49.8

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc---CCC--cEEeecEEEEcCCCCCCchhhccccccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSL  234 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~  234 (275)
                      ..+...+.+.++++|++++.+++|+++..+++.+ .+++   .+|  .++.|+.||+|+|... ..+....+..+++
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~~~g~~~~i  203 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRIAEYAGLDIRM  203 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHHHHhcCCCCce
Confidence            3567777788889999999999999998765543 2443   234  3699999999999875 3455444443333

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.15  E-value=0.073  Score=43.31  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++++|||.|..|.++|..|+ .|.+|++++|++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999999999999998 6999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.14  E-value=0.073  Score=46.94  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            47999999999999998887 6999999998754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.14  E-value=0.1  Score=40.06  Aligned_cols=33  Identities=33%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|+|.|-.|..+|..|. .|++|+++|++.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999999999999997 699999998764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.08  E-value=0.083  Score=43.49  Aligned_cols=32  Identities=44%  Similarity=0.563  Sum_probs=28.2

Q ss_pred             eEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      +|+|||+|.+|.++|+.|. .|  .+++++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            7999999999999999987 56  57999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.07  E-value=0.076  Score=46.89  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      -.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            367999999999999999887 6999999998765

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.07  E-value=0.096  Score=43.16  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|++|++++++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57999999999999999997 6999999998763

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.05  E-value=0.064  Score=41.20  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+.|.|||||..|...|.-.+ .|++|.++|++..
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            34578999999999999997776 7999999999875

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.96  E-value=0.076  Score=46.36  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|+.+|..|+ .  |++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            57999999999999999998 4  588999997643

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.095  Score=43.36  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~   52 (275)
                      ..|||+|.|-|+.-...+..|. .|.+|+.||+++.+|....
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a   46 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA   46 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence            3699999999999999999998 7999999999999985543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.90  E-value=0.096  Score=42.57  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      .++|+|||+|-+|-++|+.|. .|. +++|++|+.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            468999999999999999998 676 799999875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.90  E-value=0.073  Score=44.24  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=28.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.|||+|..|.+.|..|. .|++|+++++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            6999999999999999998 689999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=93.81  E-value=0.52  Score=45.46  Aligned_cols=92  Identities=17%  Similarity=0.037  Sum_probs=59.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC-----------CcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~  196 (275)
                      +|+.|+..|..+.  ..+.++.+++..+.+....           ..++...+.+.++.. +++++.++.|..+...+..
T Consensus       171 aGPAGLaAA~~aa--r~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v  248 (985)
T TIGR01372       171 AGPAGLAAALAAA--RAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTV  248 (985)
T ss_pred             CCHHHHHHHHHHH--hCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeE
Confidence            8899999999988  6789999999865443210           012223444555555 5999999999887532211


Q ss_pred             ceEE-----c----C----CC-cEEeecEEEEcCCCCCCc
Q 023957          197 DTYL-----T----S----TG-DTINADCHFLCTGKPVGS  222 (275)
Q Consensus       197 ~~v~-----~----~----~g-~~~~~d~vv~a~G~~~~~  222 (275)
                      ..+.     +    .    ++ .++.+|.||+|+|..+..
T Consensus       249 ~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       249 GALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             EEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            1110     0    0    11 268999999999988754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.79  E-value=0.12  Score=39.71  Aligned_cols=33  Identities=30%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++++|...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            478999999999999999998 587 699999763

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.79  E-value=0.099  Score=38.63  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|-+||-|..|...|..|. .|++|+++|+.+
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            368999999999999999997 799999999865

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.78  E-value=0.11  Score=44.57  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.|+|+|.|..|..+|..|+ .|.+|+++|.++.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            3578999999999999999998 6999999998763

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.76  E-value=0.11  Score=42.97  Aligned_cols=35  Identities=37%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~   46 (275)
                      .+++|.|||+|..|.++|+.|. .+ .+++|+|.+..
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            3568999999999999999887 56 58999998664

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=93.75  E-value=0.05  Score=45.14  Aligned_cols=56  Identities=20%  Similarity=0.213  Sum_probs=40.8

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-----eE-EcCCCcEEe---ecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-----TY-LTSTGDTIN---ADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-----~v-~~~~g~~~~---~d~vv~a~G~~  219 (275)
                      ..+...+..+|+++||.+..+..|+.|+.+...-     .+ ++.+++.++   -|.|++..|..
T Consensus       227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi  291 (587)
T COG4716         227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI  291 (587)
T ss_pred             HHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence            4567778899999999999999999998654311     12 356776554   47888887754

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=93.70  E-value=0.46  Score=42.75  Aligned_cols=51  Identities=24%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             HHHHHHHHhC-CCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957          168 DKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       168 ~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ..+.+.+++. |++++ ...|.++..+++. ..|.+.+|..+.|+.||+|+|..
T Consensus       104 kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192        104 AAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             HHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            4455555554 78886 4567777654444 44788889999999999999953

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.68  E-value=0.078  Score=43.00  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|.|||.|..|.+.|..|+ .|++|+++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6999999999999999997 6999999998653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.66  E-value=0.12  Score=40.54  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~---~v~vie~~~~   46 (275)
                      ..+|+|+|+|-+|..+|..|. .|.   ++.+++++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl   62 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV   62 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence            468999999999999999997 576   5999999853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.64  E-value=0.1  Score=45.67  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|+|.|-+|.++|..|. .|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            468999999999999999998 699999999654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.61  E-value=0.086  Score=46.47  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            57999999999999999987 6999999998764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.60  E-value=0.098  Score=45.03  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      .++|+|+|-|-.|+++|..|. +|.+|++.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999998 69999999977654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=93.53  E-value=0.26  Score=43.18  Aligned_cols=51  Identities=25%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             HHHHHHHHh-CCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCC
Q 023957          168 DKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       168 ~~~~~~~~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ..+.+.++. .|+.++.+. |.++..+++  ...|++.+|..+.|+.||++||.-
T Consensus       104 ~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445         104 RAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             HHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            334444544 467776544 555555443  456899999999999999999954

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.52  E-value=0.26  Score=47.00  Aligned_cols=80  Identities=18%  Similarity=0.141  Sum_probs=54.8

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc---------CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      +|+.|+..|..|+  ..|.+++++++.+.+...         ...+..+...+.+.+.|++++.+....          +
T Consensus       545 GGPAGLSAA~~LA--r~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----------~  612 (1012)
T TIGR03315       545 AGPAGLSAGYFLA--RAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----------L  612 (1012)
T ss_pred             CCHHHHHHHHHHH--HCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc----------e
Confidence            8889999999998  578999999987653221         122344444566777899998874311          1


Q ss_pred             EcCCCcEEeecEEEEcCCCCC
Q 023957          200 LTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       200 ~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ...+.+...+|.||+|+|..+
T Consensus       613 ~ve~l~~~gYDaVIIATGA~~  633 (1012)
T TIGR03315       613 TVAELKNQGYKYVILAIGAWK  633 (1012)
T ss_pred             EhhhhhcccccEEEECCCCCC
Confidence            222333466899999999874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.44  E-value=0.15  Score=42.05  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=28.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      +.+|.|||+|..|.++|+.|. .+  -++.|+|.+..
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            469999999999999999987 44  47999998663

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02676 polyamine oxidase

Probab=93.42  E-value=0.24  Score=43.65  Aligned_cols=41  Identities=20%  Similarity=0.404  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITW   51 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~   51 (275)
                      ..++||+|||||++||+||++|+ .|. +|+|+|++..+|+.+
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~   66 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM   66 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence            34689999999999999999998 687 699999999988654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.35  E-value=0.1  Score=45.51  Aligned_cols=31  Identities=35%  Similarity=0.681  Sum_probs=28.5

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|+|+|+|..|..+|..|. .|++|+++|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            7999999999999999998 699999999854

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.32  E-value=0.093  Score=48.46  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|...|..++ .|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            67999999999999999887 7999999998764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.31  E-value=0.12  Score=43.54  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=25.6

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      .|+|+|+||.||.++..++ .|. +|+++|+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            6999999999999988777 564 677778755

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.28  E-value=0.13  Score=45.14  Aligned_cols=34  Identities=38%  Similarity=0.576  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|+|.|-+|+++|..|. .|.+|++.|++.
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3467999999999999999887 699999999754

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.27  E-value=0.15  Score=36.32  Aligned_cols=34  Identities=47%  Similarity=0.645  Sum_probs=28.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++|+|....
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            368999999999999999998 586 6999997654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02494 adenosylhomocysteinase

Probab=93.22  E-value=0.14  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.|+|+|.|..|..+|..|+ .|.+|+++|+.+.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            579999999999999999998 6999999998763

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=93.22  E-value=0.16  Score=40.31  Aligned_cols=34  Identities=29%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+++|+|+|+.+...|..++ .|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            468999999999999999888 6999999998765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.20  E-value=0.18  Score=38.43  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++++|+|| |..|..+|..|. .|.+|+++.|+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999997 999999998887 688999998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.15  E-value=0.14  Score=44.87  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~-aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||.|-+|++ +|..|+ +|++|++.|.+..
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            3468999999999999 588887 7999999997653

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.15  E-value=0.13  Score=42.42  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=27.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      .+|.|||.|..|.+.|..|+ .|  .+|+++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            58999999999999999997 56  4899999865

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.07  E-value=0.12  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+|+|+|.|..|...|..|+ +|++++++|+++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            468999999999999999998 6999999998764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.05  E-value=0.2  Score=38.90  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||||..++.=+..|. .|.+|+|+.+.-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3578999999999988787776 699999997654

>PLN02602 lactate dehydrogenase

Probab=93.02  E-value=0.18  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=28.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.++|+.|. .+  -++.|+|.+..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            69999999999999999987 44  36999998653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.90  E-value=0.16  Score=39.56  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             eEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.||| +|..|.+.|..|. .|++|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 7999999999987 689999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.17  Score=44.78  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|+|.|-+|+++|..|+ .|++|++.|.+.
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            457999999999999998887 799999999754

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.82  E-value=0.28  Score=31.83  Aligned_cols=32  Identities=44%  Similarity=0.531  Sum_probs=27.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDP   43 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~   43 (275)
                      ..++++|+|.|..|..+|..|. . +.++.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3478999999999999998887 4 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.80  E-value=0.14  Score=47.18  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      -++|.|||||..|...|..++ .|++|+++|.+..
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            468999999999999999887 7999999998764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.77  E-value=0.19  Score=41.98  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++|+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            478999999999999999998 586 899999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	4e-29
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	5e-26
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-23
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	7e-20
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	3e-18
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	4e-17
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	4e-17
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	7e-16
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	2e-15
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-14
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	2e-14
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-14
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	9e-14
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	9e-14
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	4e-13
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	5e-13
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	1e-12
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-12
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	2e-12
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	2e-12
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	1e-11
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	3e-09
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-07
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-06
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-05
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-05
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	4e-05
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	5e-05
4dna_A	463	Probable glutathione reductase; structural genomic	7e-05
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-04
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-04
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	2e-04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	2e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	5e-04
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	5e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  104 bits (262), Expect = 5e-26
 Identities = 55/323 (17%), Positives = 92/323 (28%), Gaps = 67/323 (20%)

Query: 13  NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYF----EITW--ASLRAMVEPSF 62
           +  VV++G G  G   A  ++       +VTLI   +YF       W     +   + +F
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63

Query: 63  GKRSVINHTD-YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK--------- 112
             R  +     + +         I+     +  A+G  V YDYL+IATG K         
Sbjct: 64  PIRHYVERKGIHFIAQSAEQ---IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGS 120

Query: 113 -------------DPVPKTRTERLNQYQAGG------PTGVELAG---EIA--------- 141
                        D   +   E     +  G        G    G   E A         
Sbjct: 121 DPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK 180

Query: 142 --VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS--KKVDVKLGERVNLDSVSEGSD 197
             +       T +     +    G +    ++  L    K+  ++      +  V +   
Sbjct: 181 RGMRDKIPSFTFITSEPYIGHL-GIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKM 239

Query: 198 TYLTSTGDTINADCH-----FLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 251
                               F        G   +     +   +  G ++VDE+ R K  
Sbjct: 240 YVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGV--EGLCNPGGFVLVDEHQRSKKY 297

Query: 252 KNIFAIGDITDIRVSASMIFPQV 274
            NIFA G    I    +   P  
Sbjct: 298 ANIFAAGIAIAIPPVETTPVPTG 320

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 98.2 bits (245), Expect = 1e-23
 Identities = 51/337 (15%), Positives = 95/337 (28%), Gaps = 90/337 (26%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEIT---------WASLRAMVEP 60
            +V+V+GG       A +L+      ADV +I+   +                +  +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 61  SFGKRSVINHTD-YLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHK--- 112
                  +         G +     I+   + V             YDY+++  G     
Sbjct: 62  ---LSEALPEKGIQFQEGTVE---KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT 115

Query: 113 ----------------DPVPKTRTERLNQYQAG------------------------GPT 132
                           +   K R E+L  +Q G                           
Sbjct: 116 ELVKGWDKYGYSVCEPEFATKLR-EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNA 174

Query: 133 GV-------ELAGEIAVDFPEK------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 179
                    E++  +   F +K       VT+   G  L +   P +            +
Sbjct: 175 DSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDL-SPNSRKAVASIYNQLGI 233

Query: 180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 239
            +       +  + E     +   G+TI AD   L      G+  LK++   D +D  G 
Sbjct: 234 KLVHN--FKIKEIRE--HEIVDEKGNTIPADITILLPPY-TGNPALKNSTP-DLVDDGGF 287

Query: 240 LMVDENLRVKGQKNIFAIGDITDIRVS--ASMIFPQV 274
           +  D N+      N++A+GD   + V     +     
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTG 324

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 59/303 (19%), Positives = 93/303 (30%), Gaps = 62/303 (20%)

Query: 14  KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI----TW--ASLRAMVEPSFGK 64
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +             R +     G 
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG-------------- 110
             +  H   +V+        I+  +  V TA G    YD  V+A G              
Sbjct: 63  DGLRAHGIQVVHDSATG---IDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEGYSEE 119

Query: 111 ----------HKDPVPKTRTERLNQYQAGG--------------PTGVELAGEIAVDF-- 144
                       +     R ++L     GG              P   E A ++A     
Sbjct: 120 AAAKLPHAWKAGEQTAILR-KQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKA 178

Query: 145 --PEKKVTLVHKGSRLLEFIGPKAGDKT--RDWLISKKVDVKLGERVNLDSVSEGSDTYL 200
             P  KV ++       +      G +        +  ++   G    +  V  G     
Sbjct: 179 HKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVE 238

Query: 201 TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGD 259
           T+ GD   AD   L           +   L +     G   VD +       K I  IGD
Sbjct: 239 TAFGDEFKADVINLIP-PQRAGKIAQIAGLTND---AGWCPVDIKTFESSIHKGIHVIGD 294

Query: 260 ITD 262
            + 
Sbjct: 295 ASI 297

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 66/305 (21%), Positives = 111/305 (36%), Gaps = 64/305 (20%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------E 48
              +    ++++VV+GG   G+ VA   + L    ++ +++  EY               
Sbjct: 28  DDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGV 87

Query: 49  IT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVY 102
           IT    L         KR  +   D  V   +V    IN  E  +      T E     Y
Sbjct: 88  ITERQKLLVQTVERMSKRFNL---DIRVLSEVVK---INKEEKTITIKNVTTNETYNEAY 141

Query: 103 DYLVIATGHKDPVP--------------KTR--TERLNQYQA-----------GGPTGVE 135
           D L+++ G K  VP              +    T+R+  Y             GG  GVE
Sbjct: 142 DVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVE 201

Query: 136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 195
           +  E  +     +VTLV   ++++  I  +      + + +  V++   + V  D++ E 
Sbjct: 202 MV-E-NLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGV--DALEEN 257

Query: 196 SDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI 254
                  +G  I  D   L  G +P  S   K   L   L   G + V+E  +     +I
Sbjct: 258 GAVVRLKSGSVIQTDMLILAIGVQP-ESSLAKGAGLA--LGVRGTIKVNEKFQT-SDPHI 313

Query: 255 FAIGD 259
           +AIGD
Sbjct: 314 YAIGD 318

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 79.5 bits (197), Expect = 4e-17
 Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 62/292 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
            ++VV+G    G+  A   + L   +D+ + +                   +       A
Sbjct: 2   PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALA 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
                F  R  I          ++A   IN     V      T E     YD L+++ G 
Sbjct: 62  YTPEKFYDRKQI---TVKTYHEVIA---INDERQTVSVLNRKTNEQFEESYDKLILSPGA 115

Query: 112 KDPVP----------KTR--TERLNQYQA-----------GGPTGVELAGEIAVDFPEKK 148
                          +    T+ ++Q+              G   +E+  E  +      
Sbjct: 116 SANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVL-E-NLYERGLH 173

Query: 149 VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 208
            TL+H+  ++ + +         D L  +++  +L E +  +++  G++    S G   +
Sbjct: 174 PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI--NAI-NGNEITFKS-GKVEH 229

Query: 209 ADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 259
            D      G  P  S +++ + +K  LD  G + V++        NI+AIGD
Sbjct: 230 YDMIIEGVGTHPN-SKFIESSNIK--LDRKGFIPVNDKFET-NVPNIYAIGD 277

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 48/298 (16%), Positives = 100/298 (33%), Gaps = 68/298 (22%)

Query: 6   QQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLI--DPK---------EYF--EITW 51
                 K+ +++++G G AG   AK+      D+T+I  +           E      + 
Sbjct: 2   HHHHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI 61

Query: 52  ASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             +  + +  + ++   N+   + +    +   I+     V    G ++ Y+ L+IA+G 
Sbjct: 62  DDI-LIKKNDWYEK---NNIKVITSEFATS---IDPNNKLVTLKSGEKIKYEKLIIASGS 114

Query: 112 KDPVPKT---------RT----ERLNQYQA---------GGPTGVELAGEIAVDFPEKKV 149
                K           +     ++              GG  G+ELA  I         
Sbjct: 115 IANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS--GTPA 172

Query: 150 TLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 208
           ++       LE  +    G   +D L    + +                      GD I 
Sbjct: 173 SIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF-------------EEMGDLIR 219

Query: 209 ADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
           + C     G KP          +KD+ + +   ++V++++     K+I+A GD+ +  
Sbjct: 220 SSCVITAVGVKP------NLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFY 270

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 76.0 bits (188), Expect = 7e-16
 Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 62/305 (20%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF------------- 47
               +    +   V+IGG  AG   A        +A+V  ++  E +             
Sbjct: 27  DDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISG 86

Query: 48  EIT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVV 101
            I     L A    +F  +  I   D  V   +     ++  +  V      T +     
Sbjct: 87  AIASTEKLIARNVKTFRDKYGI---DAKVRHEVTK---VDTEKKIVYAEHTKTKDVFEFS 140

Query: 102 YDYLVIATG-----------HKDPVPKTRT--------ERLNQYQA-------GGPTGVE 135
           YD L+IATG               V   +T        + L   +        GG  G+E
Sbjct: 141 YDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200

Query: 136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 195
           +A E       KKV ++ +   +         +          +++   E V        
Sbjct: 201 MA-E-TFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVK-AFKGNE 257

Query: 196 SDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI 254
               + +   T  AD   +  G KP  +D+L+ T ++   +  G + V+  ++    +++
Sbjct: 258 RVEAVETDKGTYKADLVLVSVGVKP-NTDFLEGTNIR--TNHKGAIEVNAYMQT-NVQDV 313

Query: 255 FAIGD 259
           +A GD
Sbjct: 314 YAAGD 318

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 72/302 (23%), Positives = 102/302 (33%), Gaps = 67/302 (22%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLID------------P-------KEYFEITW 51
           K VVVIG    G   A   K L   A VT+ID            P            +  
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQA 63

Query: 52  ASLRAMVEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYL 105
                + +P  F     +   + LV  R  A   I+   + V      T E R + YD L
Sbjct: 64  TPYNVVRDPEFFRINKDV---EALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKL 117

Query: 106 VIATGHKDPVP-------------KTR--TERLNQYQA-----------GGPTGVELAGE 139
           V+A G K   P                   E +    +           GG  G+E+A  
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMA-V 176

Query: 140 IAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 198
              D      T+V    +++  F         R  L    V V  GE+V       G   
Sbjct: 177 SLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA 236

Query: 199 YLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 257
            + +   T++AD   L  G  P  +   +D  L+  LD  G ++VD  +R     +IFA 
Sbjct: 237 RVITDKRTLDADLVILAAGVSPN-TQLARDAGLE--LDPRGAIIVDTRMRT-SDPDIFAG 292

Query: 258 GD 259
           GD
Sbjct: 293 GD 294

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 66/297 (22%), Positives = 105/297 (35%), Gaps = 68/297 (22%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  V++ G G AG  VA SL   ++   + LI+     P       K Y +        M
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60

Query: 58  VEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKD 113
             P  F +   I     L++ R+V+   I+    ++L A G  + Y +LV+ATG      
Sbjct: 61  FRPEKFFQDQAIE----LISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRML 113

Query: 114 PVPKT--------RT----ERLNQYQA---------GGPTGVELA------GEIAVDFPE 146
            VP          RT    E L Q             G  G+E A      G        
Sbjct: 114 DVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG-------- 165

Query: 147 KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLTSTG 204
            +V +V    R++   + P+      D      + +  G R   + +  +     + S G
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG 225

Query: 205 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261
           +T+  D   +  G     +          L T   ++VD+ L      +I AIGD  
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAA----GLPTAAGIIVDQQLLT-SDPHISAIGDCA 277

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 56/297 (18%), Positives = 99/297 (33%), Gaps = 54/297 (18%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITW 51
            + + +   VV++G G  G+  A +L    F   V +I      P       KEY     
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK 62

Query: 52  ASLRAMVEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAT 109
              R  + P+  +  ++V    +  +   +V+   ++   + V   +G  + Y  L+ AT
Sbjct: 63  TFERICIRPAQFWEDKAV----EMKLGAEVVS---LDPAAHTVKLGDGSAIEYGKLIWAT 115

Query: 110 G---HKDPVPKT--------RT----ERLNQYQAGGPTGVELAG------EIAVDFPEK- 147
           G    +              RT    +RL      G     + G      E A    +  
Sbjct: 116 GGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFG 175

Query: 148 -KVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLTSTG 204
             VTL+    R+L    G    +  +    +  VD++ G  ++ ++             G
Sbjct: 176 VNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDG 235

Query: 205 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261
             I AD   +  G       L              + VDE  R     +++AIGD  
Sbjct: 236 SVIPADIVIVGIGIVPCVGALISA----GASGGNGVDVDEFCRT-SLTDVYAIGDCA 287

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 64/293 (21%), Positives = 101/293 (34%), Gaps = 65/293 (22%)

Query: 15  RVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAMVE 59
            V +IG GV G   A++L    F   ++LI      P       K   + +      + E
Sbjct: 4   HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAE 63

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH---KDPVP 116
             +   + I   D L    + A   +++    +   +G  +  D +VIATG       +P
Sbjct: 64  ADWYGEARI---DMLTGPEVTA---LDVQTRTISLDDGTTLSADAIVIATGSRARTMALP 117

Query: 117 KT--------RT----ERLNQYQA---------GGPTGVELA------GEIAVDFPEKKV 149
            +        RT    + L              GG  G E+A      G          V
Sbjct: 118 GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLG--------LSV 169

Query: 150 TLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 208
           T++  G  LL   +G + G   R  L    V V+LG  V   S     +  + S G +  
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229

Query: 209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261
           AD   +C G        +       L     ++VD        K +FA+GD+ 
Sbjct: 230 ADSALICVGAEPADQLARQA----GLACDRGVIVDHCGAT-LAKGVFAVGDVA 277

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 52/314 (16%), Positives = 105/314 (33%), Gaps = 80/314 (25%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
           K++++IGG   G+  A   + L  +A++ + +  EY              EI   ++L  
Sbjct: 2   KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVL 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG- 110
               SF  R  +   +  V   +VA   I+     V           +  YD L+++ G 
Sbjct: 62  QTPESFKARFNV---EVRVKHEVVA---IDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA 115

Query: 111 ----------HKDPVPKTRT--------ERLNQYQA-------GGPTGVELAGEIAVDFP 145
                             R         + +            GG  G+E+  E ++   
Sbjct: 116 APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMM-E-SLHHL 173

Query: 146 EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV------------------ 187
             K TL+    +++  +  +        +  + VD++LG  +                  
Sbjct: 174 GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGE 233

Query: 188 -NLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDEN 245
                  +G  +   S G+ +  D   +  G +P  +   +D  L   +   G + V+  
Sbjct: 234 DTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP-ETQLARDAGLA--IGELGGIKVNAM 290

Query: 246 LRVKGQKNIFAIGD 259
           ++      I+A+GD
Sbjct: 291 MQT-SDPAIYAVGD 303

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 69.5 bits (171), Expect = 9e-14
 Identities = 61/303 (20%), Positives = 103/303 (33%), Gaps = 74/303 (24%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  VV++G G+AG  VA  L    +  ++ L+      P       K Y      +    
Sbjct: 4   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 63

Query: 58  VEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
           +     +  +++      L   ++ A   IN    +V+ ++GR + YD LV+ATG     
Sbjct: 64  LRTPDAYAAQNI----QLLGGTQVTA---INRDRQQVILSDGRALDYDRLVLATGGRPRP 116

Query: 113 DPVPKT-----------RT----ERLNQYQA---------GGPTGVELA------GEIAV 142
            PV              RT    E + +            GG  G+E+A           
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKAN---- 172

Query: 143 DFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-- 199
                 VTL+   +R+LE    P              VD++ G +V    +S        
Sbjct: 173 ----MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 200 -LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 258
            L   G  + AD      G     +          L     ++++E+++      I A+G
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAA----GLQVDNGIVINEHMQT-SDPLIMAVG 283

Query: 259 DIT 261
           D  
Sbjct: 284 DCA 286

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 69.8 bits (171), Expect = 9e-14
 Identities = 54/319 (16%), Positives = 94/319 (29%), Gaps = 67/319 (21%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYF---- 47
           Q     +   ++IGGG A    A+S+      A V ++      P       KE +    
Sbjct: 5   QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 64

Query: 48  EITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP--------------AINITENEVL 93
                +LR        +        + V+ + +                  +++ +N V 
Sbjct: 65  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 124

Query: 94  TAEGRRVVYDYLVIATG---------------HKDPVPKTRT----ERLNQYQA------ 128
             +G ++ Y+  +IATG                K      R       L +         
Sbjct: 125 LNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSIT 184

Query: 129 ---GGPTGVELAGEIAVDFPE--KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVK 182
              GG  G ELA  +         +V  +      +   +     + T + +  + V V 
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244

Query: 183 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 242
               V    VS G        G  +  D      G     +  K   L+   D  G   V
Sbjct: 245 PNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR-V 303

Query: 243 DENLRVKGQKNIFAIGDIT 261
           +  L+ +   NI+  GD  
Sbjct: 304 NAELQAR--SNIWVAGDAA 320

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 56/299 (18%), Positives = 92/299 (30%), Gaps = 72/299 (24%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWAS 53
            E     VVV+G G+A       L    +   +T++      P       K++       
Sbjct: 3   QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFM------ 56

Query: 54  LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-- 111
                E            ++L+        + +   + V  ++GR + Y  LV+ATG   
Sbjct: 57  AHGDAEKIRLDCKRAPEVEWLLGVTAQ---SFDPQAHTVALSDGRTLPYGTLVLATGAAP 113

Query: 112 -KDPVPKT--------RT----ERLNQYQA---------GGPTGVELA------GEIAVD 143
              P  +         RT     R+              GG  G+ELA      G     
Sbjct: 114 RALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG----- 168

Query: 144 FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 202
                V+LV    RL+         D    +  ++ VD++    V            L  
Sbjct: 169 ---VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV----TGSVDGVVLLD 221

Query: 203 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261
            G  I AD   +  G        +       L     + VD   R     +++A+GD+T
Sbjct: 222 DGTRIAADMVVVGIGVLANDALARAA----GLACDDGIFVDAYGRT-TCPDVYALGDVT 275

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 53/294 (18%), Positives = 96/294 (32%), Gaps = 63/294 (21%)

Query: 13  NKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLR 55
           + ++V+IG   AG   A   +     A+++LID +                 I      R
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEAR 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL---TAEGRRVVYDYLVIATGHK 112
            + E    ++ +      L+N  +VA   +++    +      E +   YD L++ATG  
Sbjct: 62  YITEEELRRQKI----QLLLNREVVA---MDVENQLIAWTRKEEQQWYSYDKLILATGAS 114

Query: 113 DPVP-------------KTR--TERLNQYQA---------GGPTGVELAGEIAVDFPEKK 148
                            K                       GP G+E   +  +   +K 
Sbjct: 115 QFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI-D-FLVKMKKT 172

Query: 149 VTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDT 206
           V +      LL ++   +   + +  L  + V     E V    + E ++  +  T    
Sbjct: 173 VHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV--LGIEETANGIVLETSEQE 230

Query: 207 INADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 259
           I+ D         P    +L   I     +    + VD  L+     N+FAIGD
Sbjct: 231 ISCDSGIFALNLHPQ-LAYLDKKI---QRNLDQTIAVDAYLQT-SVPNVFAIGD 279

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 77/301 (25%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRAM 57
           +V+V+G    G        +L   A++   +  ++              ++    S+R M
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 58  VEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG-- 110
                  R V    +   N  I A   I   E++V      + E R   YD L+I+ G  
Sbjct: 62  TGEKMESRGV----NVFSNTEITA---IQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114

Query: 111 ---------HKDPVPKTRT--------ERLNQYQA-------GGPTGVELAGEIAVDFPE 146
                      D +   R         ++    +         G  G+E A        E
Sbjct: 115 PFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAA--------E 166

Query: 147 ------KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199
                 KKVT++    R L  ++  +  D   + + +  + +  GE V      +G    
Sbjct: 167 AFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVE-RYEGDGRVQK 225

Query: 200 LTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 258
           + +  +  +AD   +  G +P  + WLK T+    L  +G++  DE +R   + ++FA+G
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPN-TAWLKGTL---ELHPNGLIKTDEYMRT-SEPDVFAVG 280

Query: 259 D 259
           D
Sbjct: 281 D 281

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 59/295 (20%), Positives = 103/295 (34%), Gaps = 64/295 (21%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EITWASLRAMV 58
           +V+V+G   AG+       +    ADVT  +  +               EI     R + 
Sbjct: 2   KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLF 61

Query: 59  EPS---FGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG 110
             S             +  +  ++     ++     +      T E +   YD L++ TG
Sbjct: 62  YSSPEELSNLGA----NVQMRHQVTN---VDPETKTIKVKDLITNEEKTEAYDKLIMTTG 114

Query: 111 HKDPVP-------------KTR--TERLNQYQA---------GGPTGVELAGEIAVDFPE 146
            K  VP             K     ++L +             G  G ELA E A     
Sbjct: 115 SKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA-E-AYSNQN 172

Query: 147 KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 205
             V L+    R+L ++   +  D       +  V++ LG +V      +      T  G 
Sbjct: 173 YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGK 232

Query: 206 TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 259
            I +D   LC G +P  ++ LK  +   ++  +G ++ DE +     ++IFA GD
Sbjct: 233 EIKSDIAILCIGFRPN-TELLKGKV---AMLDNGAIITDEYMHS-SNRDIFAAGD 282

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 58/287 (20%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE------------YF--EITWASLRAMVE 59
            +VV++G G  G  +AK L  + +VT+ID KE            Y    I    L     
Sbjct: 9   SKVVIVGNGPGGFELAKQLSQTYEVTVID-KEPVPYYSKPMLSHYIAGFIPRNRL-FPYS 66

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
             + ++      +  +         I+     V+T +G  V YD LV+ATG +   P+  
Sbjct: 67  LDWYRK---RGIEIRLAEEAKL---IDRGRKVVITEKGE-VPYDTLVLATGARAREPQIK 119

Query: 119 --------RT----ERLNQYQAGGPTGVELAG-----EIAVDFPEK--KVTLVHKGSRLL 159
                   RT    +R+ +        + + G     E+A +  E    V L+H+G+  L
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179

Query: 160 EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-K 218
                +  +  +D L    V   L        + E ++  + +    I         G  
Sbjct: 180 GL-DEELSNMIKDMLEETGVKFFLN-----SELLEANEEGVLTNSGFIEGKVKICAIGIV 233

Query: 219 PVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
           P         + + S + T   +++D+N R    K+++AIGD  +  
Sbjct: 234 P------NVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEYS 273

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 65/293 (22%), Positives = 110/293 (37%), Gaps = 63/293 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWAS---------------LR 55
           K+VV+IGGG AG   A   K L+   DV + +  E+  ++ A                L 
Sbjct: 4   KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW--VSHAPCGIPYVVEGLSTPDKLM 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-TAEGRRVVYDYLVIATG---- 110
                 F K+  I   D  +N  ++    ++     V      +   +DYLV A G    
Sbjct: 62  YYPPEVFIKKRGI---DLHLNAEVIE---VDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115

Query: 111 -------HKDPVPKTRT--------ERLNQYQA-------GGPTGVELAGEIAVDFPEKK 148
                  +   V             E + +Y+        GG  G+E+A E A     K 
Sbjct: 116 VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA-E-AFAAQGKN 173

Query: 149 VTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 207
           VT++ +G R+L      +  D   + L  K V+++L E        E     + +     
Sbjct: 174 VTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITM-KIEGEERVEKVVTDAGEY 231

Query: 208 NADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 259
            A+   L TG KP   +  K   ++  +   G +  +E ++    +N++A GD
Sbjct: 232 KAELVILATGIKP-NIELAKQLGVR--IGETGAIWTNEKMQT-SVENVYAAGD 280

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 55/296 (18%), Positives = 100/296 (33%), Gaps = 59/296 (19%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLI--DPK---------EYF--EITWASLR 55
           +   +V+IG G+AG  +A+          + +I  D             F        L 
Sbjct: 3   ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
                +  ++    +   L + R+     I+   ++ +      V Y  LV+A G    +
Sbjct: 63  MAEPGAMAEQ---LNARILTHTRVT---GID-PGHQRIWIGEEEVRYRDLVLAWGAEPIR 115

Query: 113 DPVPKT--------RT----ERLNQYQAGGPTGVELAG-----EIAVDFPE--KKVTLVH 153
            PV                  R  Q  AG    + L       E A D      ++ +V 
Sbjct: 116 VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVA 175

Query: 154 KGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LTSTGDTINAD 210
              +++   + P A    +  L    V   LG    L S+ +  +      S G+ I  D
Sbjct: 176 PCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLG--PVLASLKKAGEGLEAHLSDGEVIPCD 233

Query: 211 CHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264
                 G +P      +  +   + L  +  ++VD +LR     NI+A+GD  ++ 
Sbjct: 234 LVVSAVGLRP------RTELAFAAGLAVNRGIVVDRSLRT-SHANIYALGDCAEVD 282

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTL------------IDPKEYFEITWASLRAMVE 59
              RV +IGGG +G+ +   +   A+ T             +D +  FE      +A  E
Sbjct: 162 AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221

Query: 60  ------PSFGKRSVINHTDYL---VNGRIVASPAI-NITENEVLTAEGRRVVYDYLVIAT 109
                 P  G   ++     L     G + A P     +   +  A+G    +D ++  T
Sbjct: 222 GREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCT 281

Query: 110 GHKDPVP 116
           G +  + 
Sbjct: 282 GFRPALS 288

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 42/212 (19%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRTERLNQY 126
            R     ++ +  NE      R V++D  ++ATG           K+    T TE L   
Sbjct: 117 ARFKDDQSLTVRLNE---GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASD 173

Query: 127 QA--------GGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRD 172
                          +ELA      G         KVT++   + L     P  G+    
Sbjct: 174 TIPERLAVIGSSVVALELAQAFARLG--------SKVTVLA-RNTLFFREDPAIGEAVTA 224

Query: 173 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTI-L 230
              ++ ++V    +          +  LT+T   + AD   + TG  P       D   +
Sbjct: 225 AFRAEGIEVLEHTQA-SQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALDAAGV 283

Query: 231 KDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262
              ++  G +++D+ +R     NI+A GD TD
Sbjct: 284 T--VNAQGAIVIDQGMRTS-NPNIYAAGDCTD 312

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 63/281 (22%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
             K++ +       + V ++     + D   I P+E+ EI    +       +       
Sbjct: 28  ARKQIALFDNNTNRNRVTQNSHGFITRDG--IKPEEFKEIGLNEVMK-----YP------ 74

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQ- 125
            + +     +V     +    E++T +  + + + +++ATG ++    +P  R E   + 
Sbjct: 75  -SVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVR-EYYGKS 132

Query: 126 -----------YQ-------AGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG 167
                       +       +          ++  ++    + +   G+ L         
Sbjct: 133 LFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNW-STDLVIATNGNEL--------S 183

Query: 168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS----TGDTINADCHFLCTGKPVGSD 223
               D L +K + V       L    +G   YL      +G  I     F+       + 
Sbjct: 184 QTIMDELSNKNIPVITESIRTL----QGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQ 239

Query: 224 WLKDTILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 262
           +++    +  L ++G  ++D+  R   K    I+  G+ T 
Sbjct: 240 FIEQLGCE--LQSNGTFVIDDFGRTSEKN---IYLAGETTT 275

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 133 GVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-L 189
            +E AG I  A      +V L ++G  +L     +   +  + L +  ++V+  E    +
Sbjct: 199 SIEFAG-IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKV 257

Query: 190 DSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENLR 247
              ++G+   +  +G   + D   L  G  P      L+   ++  +  +G + VD   +
Sbjct: 258 TKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVE--VAKNGAIKVDAYSK 315

Query: 248 VKGQKNIFAIGDITD 262
                NI+AIGD+TD
Sbjct: 316 T-NVDNIYAIGDVTD 329

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 133 GVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-L 189
            VE AG I  A   P  KVTL ++ + +L        ++    L +  +++   E    +
Sbjct: 203 SVEFAG-IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKV 261

Query: 190 DSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRV 248
              ++GS      +G T++ D   +  G  P  ++ L+   +   L   G + VDE  R 
Sbjct: 262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR-TNDLQLGNVGVKLTPKGGVQVDEFSRT 320

Query: 249 KGQKNIFAIGDITD 262
               NI+AIGDITD
Sbjct: 321 -NVPNIYAIGDITD 333

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Length = 274

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P  +  I     + +             
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 71  TDYLVNGRIVASPAINIT----ENEVLTAEGRRVVYDYLVIATGHKD 113
                N     +          ++E L  E     +  ++       
Sbjct: 72  RFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHP 118

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 133 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 188
            VE A     + V       TL+++G  +L              +  K + +   + +  
Sbjct: 182 AVEFANIFHGLGVK-----TTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQS 236

Query: 189 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 246
           + + ++G     T     I AD   L  G  P  +   L+   ++   +  G ++VD   
Sbjct: 237 VSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVR--TNELGAIIVDAFS 294

Query: 247 RVKGQKNIFAIGDITD 262
           R      I+A+GD+TD
Sbjct: 295 RT-STPGIYALGDVTD 309

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 133 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 188
           GVEL G    +          L       L    P   +   + + ++   +        
Sbjct: 179 GVELGGVINGLGAK-----THLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKA 233

Query: 189 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 246
           +   ++GS T     G +   DC     G +P   +  L+   +K   +  G ++VD+  
Sbjct: 234 VVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVK--TNEKGYIVVDKYQ 291

Query: 247 RVKGQKNIFAIGDITD 262
                + I+A+GD T 
Sbjct: 292 NT-NIEGIYAVGDNTG 306

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 133 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 189
           GVE A     + V       TL+H+G  +L            D +++K + +     V  
Sbjct: 203 GVEFANIFHGLGVK-----TTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV-- 255

Query: 190 DSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENL 246
             V    + Y    + G TI AD   L TG  P  +  L        ++  G ++VDE +
Sbjct: 256 SQVQSTENCYNVVLTNGQTICADRVMLATGRVPN-TTGLGLERAGVKVNEFGAVVVDEKM 314

Query: 247 RVKGQKNIFAIGDITD 262
                 +I+A+GD+T 
Sbjct: 315 TT-NVSHIWAVGDVTG 329

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 41/152 (26%)

Query: 129 GGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG 184
           GG +G      ++         K VT++    +          +     +  + +   + 
Sbjct: 163 GGNSGAIAAISMSE-YV-----KNVTIIEYMPKY------MCENAYVQEIKKRNIPYIM- 209

Query: 185 ERVNLDSVSE---GSDTYLTS-------TGD--TINADCHFLCTGKPVGSDWLKDTILKD 232
                ++      G    +T        TG+   I  D  F+  G    + +LKD+ +K 
Sbjct: 210 -----NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVK- 263

Query: 233 SLDTHGMLMVDENLR--VKGQKNIFAIGDITD 262
            LD  G ++VD   R  V G   ++A GD+T 
Sbjct: 264 -LDERGYIVVDSRQRTSVPG---VYAAGDVTS 291

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 133 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 188
           G+ELAG       +     VT+V    RLL    P       + + ++ ++  L   V  
Sbjct: 178 GIELAGLLRSFGSE-----VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAA 232

Query: 189 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 246
           L+  ++G+             D      G  P   D  L+   ++  + ++GM+  D   
Sbjct: 233 LERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE--VQSNGMVPTDAYQ 290

Query: 247 RVKGQKNIFAIGDITD 262
                  ++A+GDIT 
Sbjct: 291 NT-NVPGVYALGDITG 305

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 148 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLDSVSEGSDTYLTSTGD- 205
           +  ++ +   L      +      D +  + +++  G  V  ++  + G    + +    
Sbjct: 239 RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN 298

Query: 206 ---TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261
               I  D  FL  G +P  ++  K   L   L   G ++V+E L+     N++A+GD+ 
Sbjct: 299 GEMRIETDFVFLGLGEQPRSAELAKILGLD--LGPKGEVLVNEYLQTS-VPNVYAVGDLI 355

Query: 262 D 262
            
Sbjct: 356 G 356

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 3  SRRQQQSEGKNKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEI 49
            R     GK  +++++GGG AG + A    K+LQ +AD+TL+   +   +
Sbjct: 15 VPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL 65

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
           ++ + K VV+IG G+ G               ++D +         L   VE   G    
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-LDKLPEAVERHTGS--- 56

Query: 68  INHTDYLVNG--RIVASPAINITENEVLTAEGRRV 100
               D  +     IVASP I +    +  A    +
Sbjct: 57  --LNDEWLMAADLIVASPGIALAHPSLSAAADAGI 89

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 38/289 (13%), Positives = 77/289 (26%), Gaps = 68/289 (23%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
             + RV+V+G G +G   +       +  DV L +     ++     +    P  G  + 
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGY--DVVLAEAGR--DLGGRVTQESALP--GLSAW 442

Query: 68  INHTDYLVNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATG---------HKDPVPK 117
               +Y     +   P + I     +T +      +++++ ATG                
Sbjct: 443 GRVKEYREA-VLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTAL 501

Query: 118 TRTERLNQYQA--------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSR 157
              E +                             G  +A  +A      +V++V  G  
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKG--YEVSIVTPG-- 557

Query: 158 LLEFIGPKAGDKTRDWLISKKV---DVKLGERVNLDSVSEGSDTYLTSTGD---TINADC 211
               +     +      I +++    V       + +V  G  T   +       +  D 
Sbjct: 558 --AQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDA 615

Query: 212 HFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 259
             + T   P          L   L                  ++  IGD
Sbjct: 616 VVMVTARLP-------REELYLDLVARR--------DAGEIASVRGIGD 649

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.98
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.98
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.98
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.98
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.98
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.98
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.98
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.97
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.97
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.97
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.97
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.97
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.97
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.97
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.97
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.97
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.97
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.97
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.97
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.96
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.96
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.95
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.94
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.93
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.93
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.92
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.92
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.92
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.92
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.92
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.92
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.91
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.89
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.89
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.86
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.85
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.83
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.81
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.72
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.62
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.57
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.52
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.51
3dme_A	369	Conserved exported protein; structural genomics, P	99.41
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.4
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.4
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.36
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.35
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.35
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.35
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.34
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.33
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.33
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.33
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.31
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.3
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.3
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.3
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.3
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.29
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.28
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.28
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.27
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.26
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.24
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.24
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.23
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.22
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.22
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.2
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.2
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.19
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.19
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.18
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.18
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.17
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.16
3atr_A	453	Conserved archaeal protein; saturating double bond	99.16
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.15
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.14
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.13
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.11
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.11
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.11
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.1
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.09
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.09
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.08
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.03
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.03
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.03
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.02
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.0
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.99
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.98
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.97
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.97
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.95
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.95
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.95
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.94
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.93
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.93
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.93
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.91
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.91
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.89
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.86
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.85
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.85
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.82
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.81
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.79
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.79
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.77
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.74
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.71
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.62
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.61
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.6
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.58
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.57
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.56
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.56
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.51
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.51
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.51
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.46
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.44
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.42
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.37
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.37
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.36
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.35
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.3
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.24
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.23
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.2
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.19
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.15
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.15
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.14
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.12
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.1
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.1
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.1
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.09
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.08
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.08
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.08
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.07
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.03
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.03
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.03
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.01
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.01
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.01
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.98
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.97
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.95
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.93
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.92
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.9
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.89
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.89
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.84
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.84
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.82
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.81
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.81
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.81
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.8
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.8
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.8
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.77
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.77
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.77
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.75
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.74
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.73
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.72
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.7
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.69
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.69
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.68
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.68
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.68
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.68
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.67
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.66
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.66
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.66
4dna_A	463	Probable glutathione reductase; structural genomic	97.65
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.64
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.63
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.63
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.62
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.62
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.61
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.61
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.59
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.59
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.59
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.57
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.53
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.53
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.52
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.52
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.52
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.49
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.46
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.44
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.42
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.42
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.3
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.28
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.23
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.23
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.22
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.18
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.18
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.14
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.92
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.84
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.79
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.77
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.76
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.75
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.69
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.67
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.65
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.59
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.5
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.48
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.46
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.37
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.34
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.33
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.31
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.28
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.24
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.16
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.13
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.13
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.11
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.1
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.07
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.07
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.04
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.94
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.9
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.88
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.87
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.84
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.83
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.79
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.77
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.76
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.69
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.66
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.64
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.6
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.58
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.54
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.49
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.49
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.39
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.38
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.38
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.37
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.37
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.36
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.31
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.31
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.3
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.3
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.21
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.21
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.18
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.16
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.15
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.15
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	95.13
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.07
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.04
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.04
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.03
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.98
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.96
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.96
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.95
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.95
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.84
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.83
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.82
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.79
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.76
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.76
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.75
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.64
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.64
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.62
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.62
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.56
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.52
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.52
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.52
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.48
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.48
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.47
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.46
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.4
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.34
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.32
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.32
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.31
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.29
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.26
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.25
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.22
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.22
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.14
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.07
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.06
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.06
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.05
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	94.02
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.97
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.96
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.96
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.93
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.92
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.9
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.86
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.84
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	93.84
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.82
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.81
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.78
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.77
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.77
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.74
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.72
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.72
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.69
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.68
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.67
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.66
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.63
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.6
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.57
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.56
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.56
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.54
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	93.53
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.49
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.48
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.48
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.4
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.39
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.39
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.32
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.31
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.28
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.27
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.26
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.25
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.22
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.19
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.18
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	93.17
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.12
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	93.12
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.12
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.1
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.09
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.08
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.07
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.06
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	93.02
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.97
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.96
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.95
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.95
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.94
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	92.92
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.9
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	92.9
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.87
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.77
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	92.77
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.76
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.73
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.72
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.69
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.67
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	92.59
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.55
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	92.55
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	92.49
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	92.49
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.45
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.41
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	92.41
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.36
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.36
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	92.2
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.19
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	92.17

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=1.8e-34  Score=244.68  Aligned_cols=247  Identities=23%  Similarity=0.334  Sum_probs=189.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCc--EEEEcCCCCcccccccccc-ccCCcccccccccccccc--cccEEEEe-eee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~--v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (275)
                      +++|+|||||+||++||.+|+ .|++  |+|||+++..++....+.. ...............+++  .++++..+ ++.
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            359999999999999999998 5776  9999999987765443332 111111111112222222  26777766 677


Q ss_pred             EeecC--eEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHH
Q 023957           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGE  139 (275)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~  139 (275)
                      .++..  .+.+.++..+.||++++|||+.|..|.++            .+....+..            +|.+++|+|..
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~  161 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT  161 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence            77654  88888888999999999999886554321            122222221            88999999999


Q ss_pred             HhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          140 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       140 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +.  ..+.+++++++.+.+++ .+++.+.+.+.+.+++.||++++++.|++++.+++...+.+++|++++||.||+|+|.
T Consensus       162 l~--~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          162 AR--KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             HH--HTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             HH--hCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            98  46899999999988775 4677888999999999999999999999998766556788999999999999999999


Q ss_pred             CCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          219 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +|+.++++..++  +.+  +.+.||++++| +.|+|||+|||+..+..
T Consensus       240 ~p~~~l~~~~gl--~~~--~gi~vd~~~~t-~~~~IyA~GD~a~~~~~  282 (410)
T 3ef6_A          240 EPADQLARQAGL--ACD--RGVIVDHCGAT-LAKGVFAVGDVASWPLR  282 (410)
T ss_dssp             EECCHHHHHTTC--CBS--SSEECCTTSBC-SSTTEEECGGGEEEEBT
T ss_pred             eecHHHHHhCCC--ccC--CeEEEccCeeE-CCCCEEEEEcceeccCC
Confidence            999988887776  344  45999999998 89999999999988764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.5e-34  Score=246.70  Aligned_cols=244  Identities=18%  Similarity=0.305  Sum_probs=184.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCccccccccccccCCccccc-cccc--ccccc--cccEEEE-eeee
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRAMVEPSFGKR-SVIN--HTDYL--VNGRIVA-SPAI   85 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--~~~~~~~-~~~~   85 (275)
                      +|+|||||+||++||..|+ .|  .+|+|||+++...+....++.......... ....  ...++  .++++.. .++.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            6999999999999999997 34  679999999877665444433222111111 1111  11111  2455533 4566


Q ss_pred             EeecC--eEEec-----CCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHh-----c------CCcchhh
Q 023957           86 NITEN--EVLTA-----EGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQ-----A------GGPTGVE  135 (275)
Q Consensus        86 ~~~~~--~v~~~-----~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~-----~------~g~~~~~  135 (275)
                      .++..  .+...     ++..+.||+||+|||+.|..|+++            ...+..+.     +      +|.+|+|
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E  161 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLE  161 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHH
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhh
Confidence            66543  33321     234688999999999987766532            11222221     1      8999999


Q ss_pred             HHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEc
Q 023957          136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  215 (275)
Q Consensus       136 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  215 (275)
                      +|..+.  ..+.+++++++.+.+++.+++++.+.+.+.++++||+++.+++|++++..    .+.+++|+++++|.|++|
T Consensus       162 ~A~~l~--~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~----~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          162 VLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN----EITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             HHHHHH--HHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT----EEEETTSCEEECSEEEEC
T ss_pred             hHHHHH--hcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC----eeeecCCeEEeeeeEEEE
Confidence            999998  56899999999999999999999999999999999999999999998743    478889999999999999


Q ss_pred             CCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          216 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       216 ~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +|.+|+.++++..++  +++++|+|.||+++|| +.|+|||+|||+..|+..
T Consensus       236 ~G~~Pn~~~~~~~gl--~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~  284 (437)
T 4eqs_A          236 VGTHPNSKFIESSNI--KLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRH  284 (437)
T ss_dssp             CCEEESCGGGTTSSC--CCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSS
T ss_pred             eceecCcHHHHhhhh--hhccCCcEecCCCccC-CCCCEEEEEEccCccccc
Confidence            999999998877766  6788999999999999 999999999999877653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=8.8e-34  Score=245.23  Aligned_cols=254  Identities=25%  Similarity=0.324  Sum_probs=182.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccc-ccccc----ccccccEEEEeeee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRS-VINHT----DYLVNGRIVASPAI   85 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~   85 (275)
                      .+.+|||||||+||+++|..|+ .+++|+|||+++++-+.+. +............ ..+..    ....+++++.+++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~Pl-L~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~  119 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPL-LPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEAT  119 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGG-GGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccc-hhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEE
Confidence            3468999999999999999998 5899999999987654322 2211111111111 11111    11236788888888


Q ss_pred             EeecC--eEEe--------------------cCCeEEeCCEEEEccCCCCCC---CchHH-----------HHH-----H
Q 023957           86 NITEN--EVLT--------------------AEGRRVVYDYLVIATGHKDPV---PKTRT-----------ERL-----N  124 (275)
Q Consensus        86 ~~~~~--~v~~--------------------~~~~~~~~~~lilatG~~~~~---~~~~~-----------~~l-----~  124 (275)
                      .++..  ++.+                    .++.++.||+||+|||+.|..   |+...           ..+     .
T Consensus       120 ~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~  199 (502)
T 4g6h_A          120 SINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAA  199 (502)
T ss_dssp             EEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHH
T ss_pred             EEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHH
Confidence            88754  4443                    245689999999999998554   43210           001     0


Q ss_pred             HHh----------------c-----CCcchhhHHHHHhhhC------------CCCEEEEEeCCCcccCcCCcchHHHHH
Q 023957          125 QYQ----------------A-----GGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTR  171 (275)
Q Consensus       125 ~~~----------------~-----~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~  171 (275)
                      .+.                .     +|++|+|+|..+....            ...++++++..+.+++.+++.+.+.+.
T Consensus       200 ~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~  279 (502)
T 4g6h_A          200 NLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQ  279 (502)
T ss_dssp             HHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHH
T ss_pred             HHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHH
Confidence            000                0     8899999998876421            236899999999999999999999999


Q ss_pred             HHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc----EEeecEEEEcCCCCCCchhhccc--ccccccCCCCceEeCCC
Q 023957          172 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTGKPVGSDWLKDT--ILKDSLDTHGMLMVDEN  245 (275)
Q Consensus       172 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~----~~~~d~vv~a~G~~~~~~~~~~~--~~~~~~~~~g~i~v~~~  245 (275)
                      +.|+++||++++++.|++++.+.........||+    +++||.||+|+|.+|++ ++...  .++...+.+|+|.||++
T Consensus       280 ~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~-~~~~l~~~~~~~~~~~g~I~Vd~~  358 (502)
T 4g6h_A          280 SHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARP-VITDLFKKIPEQNSSKRGLAVNDF  358 (502)
T ss_dssp             HHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCH-HHHHHHHHSGGGTTCCSSEEBCTT
T ss_pred             HHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCH-HHHhHHHhccccccCCCceeECCc
Confidence            9999999999999999999855433345566764    69999999999999874 22221  22335677899999999


Q ss_pred             ccccCCCCeEEeccccCCCCCC
Q 023957          246 LRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       246 ~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +|++++|+|||+|||+..|.++
T Consensus       359 lq~~~~~~IfAiGD~a~~~~p~  380 (502)
T 4g6h_A          359 LQVKGSNNIFAIGDNAFAGLPP  380 (502)
T ss_dssp             SBBTTCSSEEECGGGEESSSCC
T ss_pred             cccCCCCCEEEEEcccCCCCCC
Confidence            9998999999999999887654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=7.6e-35  Score=252.19  Aligned_cols=253  Identities=22%  Similarity=0.232  Sum_probs=187.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh--cCCcEEEEc--------CCCCcccccccc---cc---------------ccCCcc-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLID--------PKEYFEITWASL---RA---------------MVEPSF-   62 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie--------~~~~~~~~~~~~---~~---------------~~~~~~-   62 (275)
                      .++||+|||||++|+++|++|+  .|++|+|||        +...+|+.+...   +.               .....+ 
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            3589999999999999999996  499999999        344555433210   00               000000 


Q ss_pred             --------ccccccc------------cccc--cc-ccEEEEeeeeEeecCeEEec---C-----CeEEeCCEEEEccCC
Q 023957           63 --------GKRSVIN------------HTDY--LV-NGRIVASPAINITENEVLTA---E-----GRRVVYDYLVIATGH  111 (275)
Q Consensus        63 --------~~~~~~~------------~~~~--~~-~~~~~~~~~~~~~~~~v~~~---~-----~~~~~~~~lilatG~  111 (275)
                              ....+..            ....  .. +++++.+.+..++.+++.+.   +     +..+.||++|+|||+
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs  165 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGS  165 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCC
Confidence                    0000000            0000  12 67788887777777777775   4     668999999999999


Q ss_pred             CCCCCchHH-------HHHHHHhc---------CCcchhhHHHHHhhhCC-CCEEEEEeCCCcccCcCCcchHHHHHHHH
Q 023957          112 KDPVPKTRT-------ERLNQYQA---------GGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL  174 (275)
Q Consensus       112 ~~~~~~~~~-------~~l~~~~~---------~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  174 (275)
                      .|..|.++.       +.+..+..         +|.+++|+|..+....+ +.+++++++.+.+++.+++++.+.+.+.+
T Consensus       166 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  245 (495)
T 2wpf_A          166 WPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQL  245 (495)
T ss_dssp             EECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHH
T ss_pred             CcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence            876654321       11111111         88999999999985433 89999999999988888899999999999


Q ss_pred             HhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCC
Q 023957          175 ISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  253 (275)
Q Consensus       175 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~  253 (275)
                      ++.||++++++.|.+++.+++ ...+.+.+|+++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~~~~  324 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-NVPN  324 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-SSTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-CCCC
Confidence            999999999999999986543 46788889989999999999999999875432333447778899999999998 8999


Q ss_pred             eEEeccccCCCC
Q 023957          254 IFAIGDITDIRV  265 (275)
Q Consensus       254 v~a~Gd~~~~~~  265 (275)
                      |||+|||+..+.
T Consensus       325 IyA~GD~~~~~~  336 (495)
T 2wpf_A          325 IYAIGDITDRLM  336 (495)
T ss_dssp             EEECGGGGCSCC
T ss_pred             EEEEeccCCCcc
Confidence            999999997543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1.1e-34  Score=249.48  Aligned_cols=249  Identities=22%  Similarity=0.290  Sum_probs=186.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c--------------------cccCC--ccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R--------------------AMVEP--SFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~--------------------~~~~~--~~~~~   65 (275)
                      .++||+|||||++|+++|.+|+ .|++|+|||++. +|+.|...   +                    ++...  .....
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            4689999999999999999998 699999999984 44433210   0                    00000  00000


Q ss_pred             cccc------------cccc--ccccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchH-------HHHHH
Q 023957           66 SVIN------------HTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------TERLN  124 (275)
Q Consensus        66 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~-------~~~l~  124 (275)
                      .+..            +...  ..+++++.+.+..++.+.+.+ ++..+.||++|+|||+.|..|+++       .+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~  160 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFF  160 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCccceecHHHHh
Confidence            0000            0000  125777777777777777777 677899999999999986665432       12222


Q ss_pred             HHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          125 QYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       125 ~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      .+..         +|.+|+|+|..+.  ..+.+++++++.+.+++.+++.+.+.+.+.+++.|++++.+++|++++.+++
T Consensus       161 ~~~~~~~~vvVvGgG~~g~e~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~  238 (463)
T 2r9z_A          161 ALQQQPKRVAIIGAGYIGIELAGLLR--SFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ  238 (463)
T ss_dssp             HCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETT
T ss_pred             hhhccCCEEEEECCCHHHHHHHHHHH--hcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence            2221         8899999999998  4589999999999888888888999999999999999999999999987655


Q ss_pred             CceEEcCCCc-EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          196 SDTYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       196 ~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ...+.+.+|+ ++++|.||+|+|.+|+.+++.....+++++++|+|.||++++| +.|+|||+|||+..+.
T Consensus       239 ~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~  308 (463)
T 2r9z_A          239 GTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITGRDQ  308 (463)
T ss_dssp             EEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGTSCC
T ss_pred             eEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCCCcc
Confidence            5678888998 8999999999999998875432233446778899999999998 8999999999987554

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=8e-35  Score=250.55  Aligned_cols=251  Identities=20%  Similarity=0.209  Sum_probs=188.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c---------------cccC-------Ccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R---------------AMVE-------PSFGK   64 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~---------------~~~~-------~~~~~   64 (275)
                      ..++||+|||||++|+++|+.|+ .|++|+|||+ ..+|+.+...   +               ....       ..+..
T Consensus         3 ~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T 4dna_A            3 AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW   81 (463)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence            34689999999999999999998 6999999999 4455432110   0               0000       00000


Q ss_pred             cccc--------c----ccccc--cccEEEEeeeeEeecCeEEe-cCCeEEeCCEEEEccCCCCC-CCchHH-------H
Q 023957           65 RSVI--------N----HTDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDP-VPKTRT-------E  121 (275)
Q Consensus        65 ~~~~--------~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~lilatG~~~~-~~~~~~-------~  121 (275)
                      ....        .    ...++  .+++++.+.+..++...+.+ .++..+.||++++|||+.|. .|.++.       +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~  161 (463)
T 4dna_A           82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSN  161 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHH
Confidence            0000        0    00011  25677777777777777777 56788999999999999877 665431       1


Q ss_pred             HHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      .+..+..         +|.+++|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+++.|++++.++.|++++.
T Consensus       162 ~~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~  239 (463)
T 4dna_A          162 EAFDLPALPESILIAGGGYIAVEFANIFH--GLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSA  239 (463)
T ss_dssp             HHTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred             HHhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEE
Confidence            2212211         7889999999998  4688999999999988888999999999999999999999999999987


Q ss_pred             CCCC-ceEE-cCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          193 SEGS-DTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       193 ~~~~-~~v~-~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +++. ..+. +.+|+ +++|.||+|+|++|+..++.....+++++++|++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~  313 (463)
T 4dna_A          240 DADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRVQL  313 (463)
T ss_dssp             CTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGSSCCC
T ss_pred             cCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCCCCCC
Confidence            6544 5788 88898 999999999999999887433334457788999999999998 89999999999986554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=1.2e-34  Score=248.50  Aligned_cols=249  Identities=19%  Similarity=0.254  Sum_probs=185.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----------cccC---Ccc---------cc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMVE---PSF---------GK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----------~~~~---~~~---------~~   64 (275)
                      .++||+|||||++|+++|++|+ .|++|+|||++. +|+.+...   +           ....   ..+         ..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            3589999999999999999998 699999999984 44432210   0           0000   000         00


Q ss_pred             ccccc------------cccc--ccccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchH-------HHHH
Q 023957           65 RSVIN------------HTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------TERL  123 (275)
Q Consensus        65 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~-------~~~l  123 (275)
                      ..+..            ....  ..+++++.+.+..++.+.+.+ ++..+.||++++|||+.|..|.++       .+.+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~  160 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSDGF  160 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGGGSBCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCccceecHHHh
Confidence            00000            0000  125777877777777777777 677899999999999986665432       1222


Q ss_pred             HHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ..+..         +|.+|+|+|..+.  ..+.+++++++.+.+++.+++.+.+.+.+.+++.|++++++++|++++.++
T Consensus       161 ~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~  238 (450)
T 1ges_A          161 FALPALPERVAVVGAGYIGVELGGVIN--GLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT  238 (450)
T ss_dssp             HHCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECT
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHH--hcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence            22221         8899999999998  458999999999988888888899999999999999999999999998654


Q ss_pred             CC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          195 GS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       195 ~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +. ..+.+.+|+++++|.||+|+|.+|+.+++.....+++++++|++.||++++| +.|+|||+|||+..+.
T Consensus       239 ~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  309 (450)
T 1ges_A          239 DGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAVE  309 (450)
T ss_dssp             TSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGTSCC
T ss_pred             CcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCcc-CCCCEEEEeccCCCCc
Confidence            43 6788889989999999999999999875422223446778899999999998 8999999999997654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.7e-33  Score=237.95  Aligned_cols=248  Identities=21%  Similarity=0.213  Sum_probs=189.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCc--EEEEcCCCCccccccccc-cccCCcc-cccccccccccc--cccEEEEe-e
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLR-AMVEPSF-GKRSVINHTDYL--VNGRIVAS-P   83 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~--v~vie~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-~   83 (275)
                      +++||+|||||++|++||++|+ .|++  |+|||+++..++....+. ....... .........+++  .++++... +
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            4589999999999999999998 5776  999999998776544333 2222111 111111122222  25666665 6


Q ss_pred             eeEeecC--eEEecCCeEEeCCEEEEccCCCCCCCchH---------------HHHHHHH----hc------CCcchhhH
Q 023957           84 AINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLNQY----QA------GGPTGVEL  136 (275)
Q Consensus        84 ~~~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~---------------~~~l~~~----~~------~g~~~~~~  136 (275)
                      +..++..  .+.+.++..+.||++++|||+.|..|.++               ...+...    .+      +|.+++|+
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~  167 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA  167 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHH
Confidence            6677654  78888888999999999999886655321               1122221    11      78899999


Q ss_pred             HHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEE
Q 023957          137 AGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFL  214 (275)
Q Consensus       137 a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~  214 (275)
                      |..+.  ..+.+++++++.+.+++ ..++.+.+.+.+.+++.|+++++++.|++++.+++.+ .+.+.+|++++||.||+
T Consensus       168 A~~l~--~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~  245 (415)
T 3lxd_A          168 AAVLT--KFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIV  245 (415)
T ss_dssp             HHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEE
T ss_pred             HHHHH--hcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence            99998  56899999999998876 4678889999999999999999999999998765554 58889999999999999


Q ss_pred             cCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          215 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       215 a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      |+|.+|+.+++...++  ..+ +| +.||++++| +.|+|||+|||+..+..
T Consensus       246 a~G~~p~~~l~~~~gl--~~~-~g-i~vd~~~~t-~~~~iyA~GD~a~~~~~  292 (415)
T 3lxd_A          246 GIGIVPCVGALISAGA--SGG-NG-VDVDEFCRT-SLTDVYAIGDCAAHAND  292 (415)
T ss_dssp             CSCCEESCHHHHHTTC--CCS-SS-EECCTTCBC-SSTTEEECGGGEEEECG
T ss_pred             CCCCccChHHHHhCCC--CcC-CC-EEECCCCCc-CCCCEEEEEeeeeecCc
Confidence            9999999988877766  333 44 999999999 89999999999988763

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=5.1e-34  Score=244.83  Aligned_cols=245  Identities=19%  Similarity=0.198  Sum_probs=179.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCccc--ccccccccccc--cccEEE-Eeeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIV-ASPAI   85 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~   85 (275)
                      +||+|||||++|++||++|+ .  |++|+|||+++.+++....+.........  ........+++  .++++. ..++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            69999999999999999997 4  89999999999888655433332222111  11111111111  144443 34555


Q ss_pred             EeecC--eEEe---cCCeEEeCCEEEEccCCCCCCCchHH---------------HHHHH---Hhc------CCcchhhH
Q 023957           86 NITEN--EVLT---AEGRRVVYDYLVIATGHKDPVPKTRT---------------ERLNQ---YQA------GGPTGVEL  136 (275)
Q Consensus        86 ~~~~~--~v~~---~~~~~~~~~~lilatG~~~~~~~~~~---------------~~l~~---~~~------~g~~~~~~  136 (275)
                      .++..  .+..   .++..+.||++++|||+.|..|.++.               ..+..   ..+      +|.+++|+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~  162 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEA  162 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHH
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            55543  4433   24567899999999999976654321               11111   111      88999999


Q ss_pred             HHHHhhhCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEc
Q 023957          137 AGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  215 (275)
Q Consensus       137 a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  215 (275)
                      |..+.  ..+.+++++.+.+.+++. +++++.+.+.+.+++.|+++++++.|++++..++.+.+.+++| ++++|.||+|
T Consensus       163 A~~l~--~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          163 IDFLV--KMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHH--HTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEEC
T ss_pred             HHHHH--hCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEEC
Confidence            99998  568999999999998874 7889999999999999999999999999986555666777777 7999999999


Q ss_pred             CCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          216 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       216 ~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|.+|+.+++...   +.++++|++.||+++|| +.|+|||+|||+..+.
T Consensus       240 ~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  285 (452)
T 3oc4_A          240 LNLHPQLAYLDKK---IQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMN  285 (452)
T ss_dssp             SCCBCCCSSCCTT---SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEE
T ss_pred             cCCCCChHHHHhh---hccCCCCCEEECcCccC-CCCCEEEEEeeEEecc
Confidence            9999998887543   46788999999999999 8999999999998763

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=1e-33  Score=244.33  Aligned_cols=249  Identities=26%  Similarity=0.331  Sum_probs=175.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCccc--ccc------cccccccc---cccE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRS------VINHTDYL---VNGR   78 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~---~~~~   78 (275)
                      ++||+|||||++|+++|+.|+ .  |++|+|||+++.+++....++........  ...      .....+++   .+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            469999999999999999997 4  89999999999876544333322211111  011      11111111   2445


Q ss_pred             EE-EeeeeEeecC--eEEecC---Ce--EEeCCEEEEccCCCCCCCchH------------HHHHHHHh--------c--
Q 023957           79 IV-ASPAINITEN--EVLTAE---GR--RVVYDYLVIATGHKDPVPKTR------------TERLNQYQ--------A--  128 (275)
Q Consensus        79 ~~-~~~~~~~~~~--~v~~~~---~~--~~~~~~lilatG~~~~~~~~~------------~~~l~~~~--------~--  128 (275)
                      +. ..++..++..  .+.+.+   +.  .+.||++++|||+.|..|.++            ......+.        +  
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            43 3555566543  454433   54  789999999999886544321            12222222        1  


Q ss_pred             ----CCcchhhHHHHHhhhCC-CCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC
Q 023957          129 ----GGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  202 (275)
Q Consensus       129 ----~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  202 (275)
                          +|.+++|+|..+.  .. +.+++++.+.+.+++ .+++.+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.
T Consensus       163 vViGgG~~g~e~A~~l~--~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~  240 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLA--DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVIT  240 (472)
T ss_dssp             EEECCSHHHHHHHHHHH--HHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEE
T ss_pred             EEECCCHHHHHHHHHHH--HhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEe
Confidence                8889999999998  44 889999999998888 888899999999999999999999999999876666678888


Q ss_pred             CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          203 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       203 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +|+++++|.||+|+|++|+..++...++  +++++|++.||++++| +.|+|||+|||+..+..
T Consensus       241 ~g~~i~aD~Vv~a~G~~p~~~l~~~~gl--~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~  301 (472)
T 3iwa_A          241 DKRTLDADLVILAAGVSPNTQLARDAGL--ELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNL  301 (472)
T ss_dssp             SSCEEECSEEEECSCEEECCHHHHHHTC--CBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBT
T ss_pred             CCCEEEcCEEEECCCCCcCHHHHHhCCc--cCCCCCCEEECCCccc-CCCCEEEeccceecccc
Confidence            8989999999999999999888765554  6788899999999998 89999999999976554

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=4e-33  Score=236.03  Aligned_cols=246  Identities=21%  Similarity=0.285  Sum_probs=186.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCccccccccc-cccCCcc-cccccccccccc--cccEEEEeeeeE
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLR-AMVEPSF-GKRSVINHTDYL--VNGRIVASPAIN   86 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~   86 (275)
                      +||+|||||++|++||++|+ .|+  +|+|||+++...+....+. ....... .........+++  .++++...++..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~   81 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVS   81 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEE
Confidence            68999999999999999998 577  8999999997766533333 1221111 111111112222  256666666777


Q ss_pred             eecC--eEEecCCeEEeCCEEEEccCCCCCCCchH------------HHH---HHHHh-c--------CCcchhhHHHHH
Q 023957           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TER---LNQYQ-A--------GGPTGVELAGEI  140 (275)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~---l~~~~-~--------~g~~~~~~a~~l  140 (275)
                      ++..  .+.+.++..+.||++++|||+.|..|.++            .+.   +.... .        +|.+++|+|..+
T Consensus        82 id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l  161 (404)
T 3fg2_P           82 IDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATA  161 (404)
T ss_dssp             EETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            7644  78888888999999999999875544321            111   22211 1        788999999999


Q ss_pred             hhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCC
Q 023957          141 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .  ..+.+++++++.+.+++ ..++.+.+.+.+.+++.|+++++++.|++++.+++.+ .+.+.+|++++||.||+|+|.
T Consensus       162 ~--~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          162 R--AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             H--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             H--hCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            8  46899999999988776 4677889999999999999999999999998765444 588899999999999999999


Q ss_pred             CCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          219 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +|+.++++..++  ..+ +| +.||++++| +.|+|||+|||+..+..
T Consensus       240 ~p~~~l~~~~gl--~~~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~  282 (404)
T 3fg2_P          240 IPNVEIAAAAGL--PTA-AG-IIVDQQLLT-SDPHISAIGDCALFESV  282 (404)
T ss_dssp             EECCHHHHHTTC--CBS-SS-EEECTTSBC-SSTTEEECGGGEEEEET
T ss_pred             ccCHHHHHhCCC--CCC-CC-EEECCCccc-CCCCEEEeecceeecCc
Confidence            999988887776  333 45 999999998 89999999999987764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=4.3e-35  Score=253.45  Aligned_cols=251  Identities=22%  Similarity=0.265  Sum_probs=188.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc---------------------cc-cC---Cccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---------------------AM-VE---PSFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~---------------------~~-~~---~~~~~~   65 (275)
                      .++||+|||||++|+++|++|+ .|++|+|||+. .+|+.+....                     .+ ..   ..+...
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            3589999999999999999998 69999999994 4443321100                     00 00   000000


Q ss_pred             ccc--------c----cccc--ccccEEEEeeeeEeecCeEEec-CCeEEeCCEEEEccCCCCC-CCchHHH-------H
Q 023957           66 SVI--------N----HTDY--LVNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDP-VPKTRTE-------R  122 (275)
Q Consensus        66 ~~~--------~----~~~~--~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~lilatG~~~~-~~~~~~~-------~  122 (275)
                      ...        .    ....  ..+++++.+.+..++...+.+. ++..+.||++++|||+.|. .|.++..       .
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  183 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNE  183 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHH
Confidence            000        0    0001  1256778888888888877776 6778999999999998877 5543211       1


Q ss_pred             HHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957          123 LNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  193 (275)
Q Consensus       123 l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  193 (275)
                      +..+.   +      +|.+++++|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|++++.++.|++++.+
T Consensus       184 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~  261 (484)
T 3o0h_A          184 IFDLEKLPKSIVIVGGGYIGVEFANIFH--GLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST  261 (484)
T ss_dssp             GGGCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC
T ss_pred             HHhHHhcCCcEEEECcCHHHHHHHHHHH--HcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee
Confidence            11111   1      7888999999998  46889999999999888888999999999999999999999999999887


Q ss_pred             CCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          194 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       194 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      ++.+.+.+.+|+++++|.||+|+|.+|+..++.....+++++++|++.||++++| +.|+|||+|||+..+..
T Consensus       262 ~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~  333 (484)
T 3o0h_A          262 ENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHIQL  333 (484)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGTSCCC
T ss_pred             CCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCCCCcC
Confidence            7777888899989999999999999999887443334457788999999999998 89999999999986543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=9e-35  Score=251.64  Aligned_cols=254  Identities=18%  Similarity=0.182  Sum_probs=189.6

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc------------------cccccCCc-------c
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS------------------LRAMVEPS-------F   62 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~------------------~~~~~~~~-------~   62 (275)
                      |+..++||+|||||++|++||..|+ .|++|+|||+++ +|+.+..                  ........       .
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   82 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISV   82 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEE
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCcc
Confidence            3334589999999999999999998 699999999986 4432110                  00000000       0


Q ss_pred             cccccccc---------------cccccccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH-------
Q 023957           63 GKRSVINH---------------TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------  120 (275)
Q Consensus        63 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~-------  120 (275)
                      ....+...               ........++.+.....+.+++.+.++..+.||++|+|||+.|..|+...       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~  162 (492)
T 3ic9_A           83 NGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLL  162 (492)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEE
Confidence            00000000               00011334566666667777888888889999999999999999887431       


Q ss_pred             --HHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          121 --ERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       121 --~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                        +.+..+..         +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+++. +++++++.|++
T Consensus       163 t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~  239 (492)
T 3ic9_A          163 TNDNLFELNDLPKSVAVFGPGVIGLELGQALS--RLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVIS  239 (492)
T ss_dssp             CHHHHTTCSSCCSEEEEESSCHHHHHHHHHHH--HTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEE
T ss_pred             cHHHHhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEE
Confidence              11111111         8899999999998  5689999999999988888899999999999988 99999999999


Q ss_pred             ecCCCCCceEEcC--CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeC-CCccccCCCCeEEeccccCCC
Q 023957          190 DSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       190 i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      ++.+++.+.+.+.  +|  +++++|.||+|+|++|+..++.....+++++++|++.|| ++++| +.|+|||+|||+..+
T Consensus       240 i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~~  318 (492)
T 3ic9_A          240 TIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNTL  318 (492)
T ss_dssp             EEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTSS
T ss_pred             EEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCCC
Confidence            9877767667664  67  689999999999999999885444445578889999999 89998 899999999999876


Q ss_pred             CCC
Q 023957          265 VSA  267 (275)
Q Consensus       265 ~~~  267 (275)
                      ...
T Consensus       319 ~~~  321 (492)
T 3ic9_A          319 TLL  321 (492)
T ss_dssp             CSH
T ss_pred             ccH
Confidence            543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=3.2e-34  Score=249.95  Aligned_cols=250  Identities=19%  Similarity=0.261  Sum_probs=189.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---ccc--------------------cCCcccc--
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RAM--------------------VEPSFGK--   64 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~~--------------------~~~~~~~--   64 (275)
                      ..++||+|||||++|+++|++|+ .|++|+|||+++.+|+.+...   +..                    .......  
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  120 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence            34689999999999999999998 699999999998666433210   000                    0000000  


Q ss_pred             --ccccc-----cc---ccc-------cccEEE-EeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchH-------
Q 023957           65 --RSVIN-----HT---DYL-------VNGRIV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------  119 (275)
Q Consensus        65 --~~~~~-----~~---~~~-------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~-------  119 (275)
                        +....     ..   .++       .+++++ ...+..++...+.+. +..+.||++++|||+.|..|.++       
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~~~v  199 (523)
T 1mo9_A          121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNAKGV  199 (523)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCCCSTTTTSBTE
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcccCcE
Confidence              00000     01   111       256666 677777777777775 77899999999999987665422       


Q ss_pred             --HHHHH-HH---h-c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957          120 --TERLN-QY---Q-A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  186 (275)
Q Consensus       120 --~~~l~-~~---~-~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  186 (275)
                        ...+. .+   . +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++++++
T Consensus       200 ~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  277 (523)
T 1mo9_A          200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSN  277 (523)
T ss_dssp             EEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCE
T ss_pred             eeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCE
Confidence              12222 22   2 2      7889999999998  5688999999999988888889999999999999999999999


Q ss_pred             eeeecCCCCC----ceEEcCCCc-EEeecEEEEcCCCCCCch-hhcccccccccCCCCceEeCCCccccCCCCeEEeccc
Q 023957          187 VNLDSVSEGS----DTYLTSTGD-TINADCHFLCTGKPVGSD-WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  260 (275)
Q Consensus       187 v~~i~~~~~~----~~v~~~~g~-~~~~d~vv~a~G~~~~~~-~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~  260 (275)
                      |++++.+++.    +.+.+.+|+ ++++|.||+|+|.+|+.+ +++..++  +++++|+|.||++++| +.|+|||+|||
T Consensus       278 V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~  354 (523)
T 1mo9_A          278 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL--DLGPKGEVLVNEYLQT-SVPNVYAVGDL  354 (523)
T ss_dssp             EEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC--ccCCCCCEEECCCCcc-CCCCEEEEeec
Confidence            9999865444    567788887 899999999999999988 6766655  6778899999999998 89999999999


Q ss_pred             cCCCCC
Q 023957          261 TDIRVS  266 (275)
Q Consensus       261 ~~~~~~  266 (275)
                      +..|..
T Consensus       355 ~~~~~~  360 (523)
T 1mo9_A          355 IGGPME  360 (523)
T ss_dssp             GCSSCS
T ss_pred             CCCccc
Confidence            987643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=245.68  Aligned_cols=248  Identities=18%  Similarity=0.212  Sum_probs=183.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----------ccc----CCccc---------
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMV----EPSFG---------   63 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----------~~~----~~~~~---------   63 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||++. +|+.|...   +           ...    ...+.         
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   88 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH   88 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence            3589999999999999999998 699999999985 44433210   0           000    00000         


Q ss_pred             ----cccccc------------cccc--ccccEEEEeeeeEeecC--eEEecCCe--EEeCCEEEEccCCCCCCC-chH-
Q 023957           64 ----KRSVIN------------HTDY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVP-KTR-  119 (275)
Q Consensus        64 ----~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~lilatG~~~~~~-~~~-  119 (275)
                          ......            ....  ..+++++.+.+..++..  .+.+.++.  .+.||++++|||+.|..| .++ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g  168 (479)
T 2hqm_A           89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPG  168 (479)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCC
Confidence                000000            0001  12567777776666655  34445665  789999999999987666 332 


Q ss_pred             ------HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcC
Q 023957          120 ------TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  184 (275)
Q Consensus       120 ------~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  184 (275)
                            .+.+..+..         +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++++
T Consensus       169 ~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~  246 (479)
T 2hqm_A          169 FELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFH--GLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKL  246 (479)
T ss_dssp             GGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             cccccchHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeC
Confidence                  122222221         8899999999998  46899999999999888888999999999999999999999


Q ss_pred             ceeeeecCCCCC--ceEEcCCC-cEEeecEEEEcCCCCCCchh-hcccccccccCCCCceEeCCCccccCCCCeEEeccc
Q 023957          185 ERVNLDSVSEGS--DTYLTSTG-DTINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  260 (275)
Q Consensus       185 ~~v~~i~~~~~~--~~v~~~~g-~~~~~d~vv~a~G~~~~~~~-~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~  260 (275)
                      ++|++++.+++.  ..+.+.+| +++++|.||+|+|.+|+..+ ++..++  +++++|+|.||++++| +.|+|||+|||
T Consensus       247 ~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~  323 (479)
T 2hqm_A          247 SKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI--KLNSHDQIIADEYQNT-NVPNIYSLGDV  323 (479)
T ss_dssp             CCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC--CBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred             CEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc--eECCCCCEeECCCCcc-CCCCEEEEEec
Confidence            999999865443  66888888 78999999999999998855 455444  6778899999999998 89999999999


Q ss_pred             cCCCC
Q 023957          261 TDIRV  265 (275)
Q Consensus       261 ~~~~~  265 (275)
                      +..+.
T Consensus       324 ~~~~~  328 (479)
T 2hqm_A          324 VGKVE  328 (479)
T ss_dssp             TTSSC
T ss_pred             CCCcc
Confidence            87654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=2.5e-33  Score=241.57  Aligned_cols=249  Identities=22%  Similarity=0.263  Sum_probs=183.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---------------------ccc--cCC---cccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------------RAM--VEP---SFGK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---------------------~~~--~~~---~~~~   64 (275)
                      .++||+|||||++|+++|++|+ .|++|+|||++ .+|+.|...                     +..  +..   ....
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            4689999999999999999998 69999999998 455332210                     000  000   0000


Q ss_pred             cccc-------------cccccc---cccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchH-----
Q 023957           65 RSVI-------------NHTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR-----  119 (275)
Q Consensus        65 ~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~-----  119 (275)
                      ..+.             .+.+++   .+++++.+.+..++..  .+.+.++  ..+.||++|+|||+.|..|.++     
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~  161 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKES  161 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcC
Confidence            0000             011111   2677777777777766  4455566  6799999999999986655432     


Q ss_pred             ----HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957          120 ----TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  186 (275)
Q Consensus       120 ----~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  186 (275)
                          ...+..+..         +|.+|+|+|..+.  ..+.+++++++.+.+++ +++.+.+.+.+.+++.|++++.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~  238 (467)
T 1zk7_A          162 PYWTSTEALASDTIPERLAVIGSSVVALELAQAFA--RLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQ  238 (467)
T ss_dssp             CCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             ceecHHHHhcccccCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCE
Confidence                122222211         8899999999998  56899999999998888 8888999999999999999999999


Q ss_pred             eeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          187 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       187 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      |++++.+++...+.++ +.++++|.||+|+|.+|+.+++.....+++++++|++.||++++| +.|+|||+|||+..|..
T Consensus       239 v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~  316 (467)
T 1zk7_A          239 ASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQPQF  316 (467)
T ss_dssp             EEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSSCCC
T ss_pred             EEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCCccc
Confidence            9999876555556665 457999999999999998876432334446777899999999998 89999999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.1e-32  Score=233.37  Aligned_cols=243  Identities=23%  Similarity=0.293  Sum_probs=183.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCcccccccccc-ccCCcccccccccccccccccEEEEee-eeE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYLVNGRIVASP-AIN   86 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (275)
                      +++||+|||||++|+++|..|+ .|.  +|+|||+++..++....+.. ................ ..+++++.+. +..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~v~~   84 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR-APEVEWLLGVTAQS   84 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTT-SCSCEEEETCCEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHH-HCCCEEEcCCEEEE
Confidence            4589999999999999999998 576  59999999876654322221 1111111111111100 1256776664 667


Q ss_pred             eec--CeEEecCCeEEeCCEEEEccCCCCCCCch-H-----------HHHHHHHh------c------CCcchhhHHHHH
Q 023957           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKT-R-----------TERLNQYQ------A------GGPTGVELAGEI  140 (275)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~-~-----------~~~l~~~~------~------~g~~~~~~a~~l  140 (275)
                      ++.  +++.+.++..+.||++++|||+.|..|++ +           .+....+.      +      +|.+|+|+|..+
T Consensus        85 i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l  164 (408)
T 2gqw_A           85 FDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATA  164 (408)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            764  47888888889999999999998765543 1           22222222      1      888999999999


Q ss_pred             hhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          141 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .  ..+.+++++++.+.+++ .+++++.+.+.+.+++.||+++.++.|++++ + +  .+++.+|++++||.||+|+|.+
T Consensus       165 ~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          165 R--TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             H--HTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEE
T ss_pred             H--hCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCC
Confidence            8  46889999999998876 4788889999999999999999999999998 3 2  6778899999999999999999


Q ss_pred             CCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          220 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      |+.++++..++  +++ +| +.||++++| +.|+|||+|||+..+..
T Consensus       239 p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~  280 (408)
T 2gqw_A          239 ANDALARAAGL--ACD-DG-IFVDAYGRT-TCPDVYALGDVTRQRNP  280 (408)
T ss_dssp             ECCHHHHHHTC--CBS-SS-EECCTTCBC-SSTTEEECGGGEEEEET
T ss_pred             ccHHHHHhCCC--CCC-CC-EEECCCCcc-CCCCEEEEEEEEEecCc
Confidence            99888877665  444 45 999999998 89999999999987753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=5.3e-34  Score=245.81  Aligned_cols=250  Identities=16%  Similarity=0.177  Sum_probs=183.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc-----------------------ccC----Ccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-----------------------MVE----PSFGK   64 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~-----------------------~~~----~~~~~   64 (275)
                      ++||+|||||++|+++|++|+ .|++|+|||+++.+|+.+.....                       .+.    .....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            589999999999999999998 69999999999877654321100                       000    00000


Q ss_pred             cccccc------------cccc--cccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchH-------
Q 023957           65 RSVINH------------TDYL--VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR-------  119 (275)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~-------  119 (275)
                      .....+            .+++  .+++++.+....++..  .+.+.++  ..+.||++|+|||+.|..|+..       
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            000000            1111  2567777776666665  4445566  6899999999999886655321       


Q ss_pred             --HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHH-HhCCCEEEcCcee
Q 023957          120 --TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERV  187 (275)
Q Consensus       120 --~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v  187 (275)
                        ...+..+..         +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+ ++.|++++++++|
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWA--RLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHH--HhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence              122222211         7899999999998  5689999999999988888889999999999 9999999999999


Q ss_pred             eeecCCCCCceEEcC--CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC-
Q 023957          188 NLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD-  262 (275)
Q Consensus       188 ~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~-  262 (275)
                      ++++.+++.+.+.+.  +|  +++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+|||+|||+. 
T Consensus       240 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~  318 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET-SIPDVYAIGDVVDK  318 (468)
T ss_dssp             EEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGBSS
T ss_pred             EEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCccc-CCCCEEEeeccCCC
Confidence            999876655666654  66  67999999999999999887432223346777899999999998 8999999999998 


Q ss_pred             CCC
Q 023957          263 IRV  265 (275)
Q Consensus       263 ~~~  265 (275)
                      .+.
T Consensus       319 ~~~  321 (468)
T 2qae_A          319 GPM  321 (468)
T ss_dssp             SCS
T ss_pred             CCc
Confidence            444

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=6.3e-33  Score=244.57  Aligned_cols=248  Identities=19%  Similarity=0.317  Sum_probs=185.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCccc--ccccccccccc---cccEEE-Eeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL---VNGRIV-ASPA   84 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~~   84 (275)
                      +||+|||||+||++||++|+ .  +++|+|||+++..++....++........  ........+.+   .++++. ..++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            69999999999999999997 3  89999999999887655444332222111  11111111111   245553 4556


Q ss_pred             eEeecC--eEEecC---C--eEEeCCEEEEccCCCCCCCchH------------HHHHHHHh--------c------CCc
Q 023957           85 INITEN--EVLTAE---G--RRVVYDYLVIATGHKDPVPKTR------------TERLNQYQ--------A------GGP  131 (275)
Q Consensus        85 ~~~~~~--~v~~~~---~--~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~--------~------~g~  131 (275)
                      ..++..  .+.+.+   +  ..+.||++++|||+.|..|.++            ......+.        +      +|.
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~  161 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF  161 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCH
Confidence            666543  444432   3  3789999999999885544321            11111111        1      889


Q ss_pred             chhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC-------------------
Q 023957          132 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV-------------------  192 (275)
Q Consensus       132 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-------------------  192 (275)
                      +|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|+++++++.|++++.                   
T Consensus       162 ~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          162 IGLEMMESLH--HLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHH--HTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHH--hcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence            9999999998  4689999999999988888888999999999999999999999999976                   


Q ss_pred             CCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          193 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .++.+.+.+.+|++++||.||+|+|.+|+..++...++  +++++|++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  310 (565)
T 3ntd_A          240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL--AIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDF  310 (565)
T ss_dssp             TTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTC--CBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEBT
T ss_pred             CCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCc--ccCCCCCEEECCCccc-CCCCEEEeeeeEeeccc
Confidence            34455677788989999999999999999888766554  6788899999999998 89999999999976553

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=4e-34  Score=247.45  Aligned_cols=252  Identities=18%  Similarity=0.187  Sum_probs=185.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh--cCCcEEEEc--------CCCCcccccccc---cc---------------ccCC----
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLID--------PKEYFEITWASL---RA---------------MVEP----   60 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie--------~~~~~~~~~~~~---~~---------------~~~~----   60 (275)
                      ++||+|||||++|+++|++|+  .|++|+|||        +...+|+.+...   +.               ....    
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999999999996  499999999        244455432110   00               0000    


Q ss_pred             -----ccccccccc------------cccc--cc-ccEEEEeeeeEeecCeEEec-----CC---eEEeCCEEEEccCCC
Q 023957           61 -----SFGKRSVIN------------HTDY--LV-NGRIVASPAINITENEVLTA-----EG---RRVVYDYLVIATGHK  112 (275)
Q Consensus        61 -----~~~~~~~~~------------~~~~--~~-~~~~~~~~~~~~~~~~v~~~-----~~---~~~~~~~lilatG~~  112 (275)
                           .+....+..            ....  .. +++++.+.+..++.+.+...     ++   ..+.||++++|||+.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~  162 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSW  162 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCC
Confidence                 000000000            0001  12 67888888778887766663     56   689999999999998


Q ss_pred             CCCCchHH-------HHHHHHhc---------CCcchhhHHHHHhhhCC-CCEEEEEeCCCcccCcCCcchHHHHHHHHH
Q 023957          113 DPVPKTRT-------ERLNQYQA---------GGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLI  175 (275)
Q Consensus       113 ~~~~~~~~-------~~l~~~~~---------~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (275)
                      |..|.++.       +.+..+..         +|.+++|+|..+....+ +.+++++++.+.+++.+++++.+.+.+.++
T Consensus       163 p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~  242 (490)
T 1fec_A          163 PQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLR  242 (490)
T ss_dssp             ECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHH
Confidence            76654321       11111111         88999999999985322 889999999999888888899999999999


Q ss_pred             hCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCe
Q 023957          176 SKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI  254 (275)
Q Consensus       176 ~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v  254 (275)
                      +.||++++++.|++++.+++ ...+.+.+|+++++|.||+|+|.+|+.+++.....+++++++|+|.||++++| +.|+|
T Consensus       243 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t-~~~~I  321 (490)
T 1fec_A          243 ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNI  321 (490)
T ss_dssp             HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTE
T ss_pred             hCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCcc-CCCCE
Confidence            99999999999999986653 46788888988999999999999999875422233447778899999999998 89999


Q ss_pred             EEeccccCCCC
Q 023957          255 FAIGDITDIRV  265 (275)
Q Consensus       255 ~a~Gd~~~~~~  265 (275)
                      ||+|||+..+.
T Consensus       322 yA~GD~~~~~~  332 (490)
T 1fec_A          322 YAIGDVTDRVM  332 (490)
T ss_dssp             EECGGGGCSCC
T ss_pred             EEEeccCCCcc
Confidence            99999997543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=8.9e-33  Score=237.18  Aligned_cols=245  Identities=21%  Similarity=0.323  Sum_probs=180.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCcc----cccccccccccc--cccEEEE-ee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSF----GKRSVINHTDYL--VNGRIVA-SP   83 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~-~~   83 (275)
                      +||+|||||++|+++|..|+ .  |.+|+|||+++..++....+........    .........+++  .++++.. ..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            58999999999999999997 4  9999999999876654332221111110    111111111111  2456643 34


Q ss_pred             eeEee--cCeEEecC-----CeEEeCCEEEEccCCCCCCCchH---------------HHHHHHHhc---------CCcc
Q 023957           84 AINIT--ENEVLTAE-----GRRVVYDYLVIATGHKDPVPKTR---------------TERLNQYQA---------GGPT  132 (275)
Q Consensus        84 ~~~~~--~~~v~~~~-----~~~~~~~~lilatG~~~~~~~~~---------------~~~l~~~~~---------~g~~  132 (275)
                      +..++  .+.+.+.+     +..+.||++++|||+.|..|.++               ...+.....         +|.+
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  160 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI  160 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence            55565  34555532     46799999999999886654321               111211111         8899


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeec
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINAD  210 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d  210 (275)
                      |+|+|..+.  ..+.+++++++.+.+++ .+++++.+.+.+.+++.|++++++++|++++.+++.+. +.+ +|+++++|
T Consensus       161 g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D  237 (452)
T 2cdu_A          161 GAELAEAYS--NQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSD  237 (452)
T ss_dssp             HHHHHHHHH--TTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEES
T ss_pred             HHHHHHHHH--hcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECC
Confidence            999999998  56899999999998887 68888999999999999999999999999986444443 444 78889999


Q ss_pred             EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .||+|+|.+|+.++++.. +  +++++|+|.||+++|| +.|+|||+|||+..+.
T Consensus       238 ~vv~a~G~~p~~~ll~~~-l--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~  288 (452)
T 2cdu_A          238 IAILCIGFRPNTELLKGK-V--AMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHY  288 (452)
T ss_dssp             EEEECCCEEECCGGGTTT-S--CBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEE
T ss_pred             EEEECcCCCCCHHHHHHh-h--hcCCCCCEEECCCcCc-CCCCEEEcceEEEecc
Confidence            999999999998887654 3  6778899999999999 8999999999998654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.6e-34  Score=250.81  Aligned_cols=250  Identities=20%  Similarity=0.193  Sum_probs=185.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCcccccccc---c---------------cccCCcc--------
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASL---R---------------AMVEPSF--------   62 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~---g~~v~vie~~~~~~~~~~~~---~---------------~~~~~~~--------   62 (275)
                      ++||+|||||++|+++|++|+ .   |++|+|||+++ +|+.+...   +               ......+        
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            489999999999999999997 5   99999999998 55432110   0               0000000        


Q ss_pred             -ccccccc------------ccccc--cccEEEEeeeeEeec------C--eEEecCCe--EEeCCEEEEccCCCCCCCc
Q 023957           63 -GKRSVIN------------HTDYL--VNGRIVASPAINITE------N--EVLTAEGR--RVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        63 -~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~------~--~v~~~~~~--~~~~~~lilatG~~~~~~~  117 (275)
                       .......            ..+++  .+++++.+.+..++.      .  .+...++.  .+.||++++|||+.|..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence             0000000            01111  256777777666665      3  34445565  7899999999999877665


Q ss_pred             hHH---------HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCC
Q 023957          118 TRT---------ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  179 (275)
Q Consensus       118 ~~~---------~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  179 (275)
                      ++.         ..+..+.   +      +|.+++|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|+
T Consensus       161 i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV  238 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYT--ELGVPVTVVASQDHVLPYEDADAALVLEESFAERGV  238 (499)
T ss_dssp             GGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHH--HTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            321         0111110   1      7889999999998  568899999999998888888999999999999999


Q ss_pred             EEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecc
Q 023957          180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  259 (275)
Q Consensus       180 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd  259 (275)
                      +++++++|++++.+++.+.+.+.+|+++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+|||+||
T Consensus       239 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD  317 (499)
T 1xdi_A          239 RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGD  317 (499)
T ss_dssp             EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSG
T ss_pred             EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc-CCCCEEEEec
Confidence            999999999998766667777888889999999999999999888432333446778899999999998 8999999999


Q ss_pred             ccCCCCC
Q 023957          260 ITDIRVS  266 (275)
Q Consensus       260 ~~~~~~~  266 (275)
                      |+..+..
T Consensus       318 ~~~~~~l  324 (499)
T 1xdi_A          318 CTGLLPL  324 (499)
T ss_dssp             GGTSCSC
T ss_pred             cCCCccc
Confidence            9987653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.1e-33  Score=236.95  Aligned_cols=247  Identities=23%  Similarity=0.351  Sum_probs=179.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCcc-cccccccccccc---cccEEEEe-ee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYL---VNGRIVAS-PA   84 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~-~~   84 (275)
                      ++||+|||||++|+++|+.|+ .  +++|+|||+++.+++....++....... .........+.+   .++++... ++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            479999999999999999997 3  8899999999987654433332221111 111111111111   25666655 56


Q ss_pred             eEeecC--eEEecCC-eEEeCCEEEEccCCCCCCCchH---------------HHHHHHHh------c-----CCcchhh
Q 023957           85 INITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPKTR---------------TERLNQYQ------A-----GGPTGVE  135 (275)
Q Consensus        85 ~~~~~~--~v~~~~~-~~~~~~~lilatG~~~~~~~~~---------------~~~l~~~~------~-----~g~~~~~  135 (275)
                      ..++..  .+.+.++ ..+.||++++|||+.|..|.++               ...+....      .     +|.+|+|
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E  162 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIE  162 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHH
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence            666654  5666666 4799999999999886544321               11222222      1     8889999


Q ss_pred             HHHHHhhhCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEE
Q 023957          136 LAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  214 (275)
Q Consensus       136 ~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  214 (275)
                      +|..+.  ..+.+++++.+.+.+++. +++++.+.+.+.+++. ++++.++.|.+++.++ .+.....+++++++|.||+
T Consensus       163 ~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          163 MAEAFA--AQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             HHHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEE
T ss_pred             HHHHHH--hCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEE
Confidence            999998  568999999999998876 8889999999999988 9999999999998655 3433455778899999999


Q ss_pred             cCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          215 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       215 a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      |+|.+|+.++++..++  +++++|++.||++++| +.|+|||+|||+..++.
T Consensus       239 a~G~~p~~~l~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~  287 (449)
T 3kd9_A          239 ATGIKPNIELAKQLGV--RIGETGAIWTNEKMQT-SVENVYAAGDVAETRHV  287 (449)
T ss_dssp             CSCEEECCHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBT
T ss_pred             eeCCccCHHHHHhCCc--cCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccc
Confidence            9999999888776655  6778899999999999 89999999999976654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.1e-33  Score=230.90  Aligned_cols=238  Identities=25%  Similarity=0.365  Sum_probs=177.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccc-ccccccc--cccEEEEe-eeeEe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-INHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      ..||+|||||+||++||..|+ .| +|+|||+++..++....+............. ....+++  .+++++.+ .+..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i   86 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   86 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence            369999999999999999998 58 9999999987654333332222111111111 1112222  25666665 46667


Q ss_pred             ecC--eEEecCCeEEeCCEEEEccCCCCCCCchH----------HHHHHHH-----h-c------CCcchhhHHHHHhhh
Q 023957           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR----------TERLNQY-----Q-A------GGPTGVELAGEIAVD  143 (275)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~----------~~~l~~~-----~-~------~g~~~~~~a~~l~~~  143 (275)
                      +..  .+. .++.++.||++|+|||+.|..|+++          .+.+..+     . +      +|.+|+|+|..+.  
T Consensus        87 d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~--  163 (367)
T 1xhc_A           87 DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLA--  163 (367)
T ss_dssp             ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHH--
T ss_pred             ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHH--
Confidence            644  565 5677899999999999986654321          1222221     1 1      8999999999998  


Q ss_pred             CCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957          144 FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  223 (275)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  223 (275)
                      ..+.+++++++.+.+++ +++++.+.+.+.+++.||+++++++|++++.    ..+.+++|+ +++|.||+|+|.+|+.+
T Consensus       164 ~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~----~~v~~~~g~-i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          164 EAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE----EGVLTNSGF-IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             HTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS----SEEEETTEE-EECSCEEEECCEEECCH
T ss_pred             hCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe----eEEEECCCE-EEcCEEEECcCCCcCHH
Confidence            46899999999998888 8888999999999999999999999999972    247778888 99999999999999988


Q ss_pred             hhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          224 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       224 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +++..++  +.+ +| +.||++++| +.|+|||+|||+..+.
T Consensus       238 ll~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~~~  274 (367)
T 1xhc_A          238 LARRSGI--HTG-RG-ILIDDNFRT-SAKDVYAIGDCAEYSG  274 (367)
T ss_dssp             HHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEBTT
T ss_pred             HHHhCCC--CCC-CC-EEECCCccc-CCCCEEEeEeeeecCC
Confidence            8777665  443 44 999999998 8999999999987643

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=3.5e-33  Score=227.85  Aligned_cols=239  Identities=16%  Similarity=0.190  Sum_probs=164.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCc-ccc-cc---cccccccccccEEEEeeee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGK-RS---VINHTDYLVNGRIVASPAI   85 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~   85 (275)
                      ++|||+||||||||++||++|+ .|++|+|||++...|......+++.... ... ..   .......+..+.+....+.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV   84 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEE
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEE
Confidence            4599999999999999999997 6999999999875543222222111110 000 00   0011111224455555554


Q ss_pred             Eeec-----CeEEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------HHHh--c-------CC-cchhhHHH
Q 023957           86 NITE-----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------NQYQ--A-------GG-PTGVELAG  138 (275)
Q Consensus        86 ~~~~-----~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~~~~--~-------~g-~~~~~~a~  138 (275)
                      .+..     .++.+.++..+.||+||+|||+.|..|+++....            ..+.  .       +| ..+.+.|.
T Consensus        85 ~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~  164 (304)
T 4fk1_A           85 MITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTK  164 (304)
T ss_dssp             EEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHH
T ss_pred             EeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHH
Confidence            4432     2678888899999999999999876665432111            0000  0       44 34677777


Q ss_pred             HHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCC
Q 023957          139 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTG  217 (275)
Q Consensus       139 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G  217 (275)
                      .+.  ..+.+++++.+.+.        +.+.+.+.+++.|++++.++ +..+..+++. ..+.+.+|+++++|.+|+++|
T Consensus       165 ~~~--~~~~~v~i~~~~~~--------~~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g  233 (304)
T 4fk1_A          165 LVY--NWSTDLVIATNGNE--------LSQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPT  233 (304)
T ss_dssp             HHT--TTCSCEEEECSSCC--------CCHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCE
T ss_pred             HHH--hCCceEEEEecccc--------chhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeec
Confidence            777  56888998877654        34556677888999998765 6666655443 458889999999999999988


Q ss_pred             CCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          218 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      .+|+..++...++  +++++|+|.||+++|| |.|+|||+|||++.+
T Consensus       234 ~~~~~~~~~~~g~--~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~~  277 (304)
T 4fk1_A          234 FFRPNQFIEQLGC--ELQSNGTFVIDDFGRT-SEKNIYLAGETTTQG  277 (304)
T ss_dssp             EECSSCHHHHTTC--CCCTTSSSCSSTTCBC-SSTTEEECSHHHHTS
T ss_pred             cccCChhhhhcCe--EECCCCCEEECcCCcc-CCCCEEEEeccCCCc
Confidence            7776677766655  7788999999999999 999999999999754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=3.8e-34  Score=246.23  Aligned_cols=249  Identities=18%  Similarity=0.200  Sum_probs=185.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c--------------------cccC-Cccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R--------------------AMVE-PSFGKRSV   67 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~--------------------~~~~-~~~~~~~~   67 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||+++ +|+.|...   +                    +... .......+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            489999999999999999998 699999999987 44332110   0                    0000 00000000


Q ss_pred             cc------------ccccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCc-hH-------HHHHHH
Q 023957           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TR-------TERLNQ  125 (275)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~-~~-------~~~l~~  125 (275)
                      ..            ...++  .+++++.+....++.+++.+. +..+.||++|+|||+.|..|+ ++       ...+..
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~  163 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALK  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHh
Confidence            00            00111  257777777766777777776 678999999999999877654 21       122211


Q ss_pred             Hh----c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          126 YQ----A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       126 ~~----~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      +.    +      +|.+|+|+|..+.  ..+.+++++++.+.+++..++++.+.+.+.+++.||+++.+++|++++.+++
T Consensus       164 l~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  241 (464)
T 2eq6_A          164 VEEGLPKRLLVIGGGAVGLELGQVYR--RLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD  241 (464)
T ss_dssp             GGGCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhhcCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC
Confidence            21    1      7899999999998  4589999999999888888888999999999999999999999999987665


Q ss_pred             CceEEcC-C--Cc--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          196 SDTYLTS-T--GD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       196 ~~~v~~~-~--g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .+.+.+. +  |+  ++++|.||+|+|.+|+.+++.....++.++++|++.||++++| +.|+|||+|||+..+..
T Consensus       242 ~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~l  316 (464)
T 2eq6_A          242 GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMET-SVPGVYAIGDAARPPLL  316 (464)
T ss_dssp             EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTCSSCC
T ss_pred             EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCccc-CCCCEEEEeccCCCccc
Confidence            5666665 6  76  8999999999999999876422223446677899999999998 89999999999986553

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.6e-34  Score=248.25  Aligned_cols=252  Identities=20%  Similarity=0.261  Sum_probs=183.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc-------------------ccCCccc-------c
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-------------------MVEPSFG-------K   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~-------------------~~~~~~~-------~   64 (275)
                      +++||+|||||++|++||+.|+ .|++|+|||+++.+|+.|.....                   .......       .
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            3589999999999999999998 69999999998887754321100                   0000000       0


Q ss_pred             cccccc------------ccc--ccccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCC-CCchH------
Q 023957           65 RSVINH------------TDY--LVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDP-VPKTR------  119 (275)
Q Consensus        65 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~-~~~~~------  119 (275)
                      ......            ...  ..+++++.+....++..  .+...++  ..+.||++|+|||+.|. +|+..      
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~~~  183 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccCCe
Confidence            000000            000  12567777777776665  4444555  57899999999998753 33321      


Q ss_pred             ----HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957          120 ----TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  186 (275)
Q Consensus       120 ----~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  186 (275)
                          ......+..         +|.+++|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.+++
T Consensus       184 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~  261 (491)
T 3urh_A          184 TIVSSTGALALEKVPASMIVVGGGVIGLELGSVWA--RLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAK  261 (491)
T ss_dssp             SEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             eEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCe
Confidence                111111111         8899999999998  4588999999999998888899999999999999999999999


Q ss_pred             eeeecCCCCCceEEcCC---C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957          187 VNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       187 v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      |.+++.+++...+.+.+   |  +++++|.||+|+|++|+.+++.....+++++++|++.||++++| +.|+|||+|||+
T Consensus       262 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  340 (491)
T 3urh_A          262 VTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVV  340 (491)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGS
T ss_pred             EEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEecC
Confidence            99998776666666542   5  58999999999999999887533334457788999999999998 899999999999


Q ss_pred             CCCCC
Q 023957          262 DIRVS  266 (275)
Q Consensus       262 ~~~~~  266 (275)
                      ..|..
T Consensus       341 ~~~~~  345 (491)
T 3urh_A          341 RGPML  345 (491)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            76643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=1.3e-32  Score=234.43  Aligned_cols=248  Identities=22%  Similarity=0.316  Sum_probs=183.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCcccccccccc-ccCCccc-ccccccccccc--cccEEEEe-e
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRA-MVEPSFG-KRSVINHTDYL--VNGRIVAS-P   83 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~   83 (275)
                      +.+||+|||||++|+++|..|+ .|.  +|+|||+++...+....+.. ....... ........+++  .+++++.+ .
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   82 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   82 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCE
Confidence            3589999999999999999998 576  79999998876543322221 1111100 11111111122  25566554 4


Q ss_pred             eeEeec--CeEEecCCeEEeCCEEEEccCCCCCCCchHH---HH------------HHHHh------c------CCcchh
Q 023957           84 AINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---ER------------LNQYQ------A------GGPTGV  134 (275)
Q Consensus        84 ~~~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~~---~~------------l~~~~------~------~g~~~~  134 (275)
                      +..++.  +.+.+.++..+.||++|+|||+.|..|+++.   ..            ...+.      +      +|.+|+
T Consensus        83 v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~  162 (431)
T 1q1r_A           83 VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGL  162 (431)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHH
T ss_pred             EEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHH
Confidence            456654  4788888888999999999999877665321   11            11111      1      888999


Q ss_pred             hHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecC--CCCCc-eEEcCCCcEEeec
Q 023957          135 ELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSV--SEGSD-TYLTSTGDTINAD  210 (275)
Q Consensus       135 ~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~~-~v~~~~g~~~~~d  210 (275)
                      |+|..+.  ..+.+++++++.+.+++ ..++.+.+.+.+.+++.|+++++++.|++++.  +++.+ .+.+.+|+++++|
T Consensus       163 E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D  240 (431)
T 1q1r_A          163 EVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD  240 (431)
T ss_dssp             HHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS
T ss_pred             HHHHHHH--hCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC
Confidence            9999998  56889999999988776 47778888999999999999999999999986  44444 5788899999999


Q ss_pred             EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .||+|+|.+|+.++++..++  +++ +| +.||++++| +.|+|||+|||+..+.+
T Consensus       241 ~Vv~a~G~~p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-s~~~IyA~GD~~~~~~~  291 (431)
T 1q1r_A          241 LVIAGIGLIPNCELASAAGL--QVD-NG-IVINEHMQT-SDPLIMAVGDCARFHSQ  291 (431)
T ss_dssp             EEEECCCEEECCHHHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEEEET
T ss_pred             EEEECCCCCcCcchhhccCC--CCC-CC-EEECCCccc-CCCCEEEEEeEEEEccc
Confidence            99999999999888877766  443 44 999999998 89999999999987654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=2.6e-34  Score=248.51  Aligned_cols=252  Identities=13%  Similarity=0.152  Sum_probs=183.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc---------------cc--CC-----ccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA---------------MV--EP-----SFGKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~---------------~~--~~-----~~~~~   65 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||+++.+|+.+...   +.               ..  ..     .....
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            3589999999999999999998 699999999977766332110   00               00  00     00000


Q ss_pred             ccccc------------cccc--cccEEEEeeeeEeecCeEEe--cCC------------eEEeCCEEEEccCCCCCCCc
Q 023957           66 SVINH------------TDYL--VNGRIVASPAINITENEVLT--AEG------------RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~--~~~------------~~~~~~~lilatG~~~~~~~  117 (275)
                      .....            ..++  .+++++.+.....+.+.+..  .++            ..+.||++|+|||+.|..|+
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~  164 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLP  164 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCC
Confidence            00000            0011  25677766665566554433  334            57899999999999866554


Q ss_pred             -hH-------HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957          118 -TR-------TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  180 (275)
Q Consensus       118 -~~-------~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  180 (275)
                       ++       ......+..         +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+
T Consensus       165 ~i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~  242 (482)
T 1ojt_A          165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDN  242 (482)
T ss_dssp             SCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEE
T ss_pred             CCCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCCE
Confidence             21       111111111         8899999999998  4588999999999998888899999999999999999


Q ss_pred             EEcCceeeeecCCCCCceEEcCC----CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEE
Q 023957          181 VKLGERVNLDSVSEGSDTYLTST----GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA  256 (275)
Q Consensus       181 i~~~~~v~~i~~~~~~~~v~~~~----g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a  256 (275)
                      +++++.|.+++.+++...+.+.+    |+++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+|||
T Consensus       243 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA  321 (482)
T 1ojt_A          243 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYA  321 (482)
T ss_dssp             EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEE
T ss_pred             EEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCccc-CCCCEEE
Confidence            99999999998766556677666    778999999999999999887432333446777899999999998 8999999


Q ss_pred             eccccCCCCC
Q 023957          257 IGDITDIRVS  266 (275)
Q Consensus       257 ~Gd~~~~~~~  266 (275)
                      +|||+..|..
T Consensus       322 ~GD~~~~~~l  331 (482)
T 1ojt_A          322 IGDIVGQPML  331 (482)
T ss_dssp             CGGGTCSSCC
T ss_pred             EEcccCCCcc
Confidence            9999986543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=3.2e-33  Score=234.46  Aligned_cols=235  Identities=23%  Similarity=0.355  Sum_probs=180.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccc-ccccccccccc--cccEEEEe-eeeE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVAS-PAIN   86 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~   86 (275)
                      .+.+|+|||||+||++||..|. .+.+|+|||+++..++....++........ .+......+++  .++++..+ ++..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            3468999999999999999997 689999999999887655544443322211 12222222222  25666644 5667


Q ss_pred             eec--CeEEecCCeEEeCCEEEEccCCCCCCCchH----------HHHHHHHh------c------CCcchhhHHHHHhh
Q 023957           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR----------TERLNQYQ------A------GGPTGVELAGEIAV  142 (275)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~----------~~~l~~~~------~------~g~~~~~~a~~l~~  142 (275)
                      ++.  +.+.+.+++.+.||+||+|||+.|..|.++          .+....+.      +      +|.+|+|+|..+. 
T Consensus        88 id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~-  166 (385)
T 3klj_A           88 IDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII-  166 (385)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHH-
T ss_pred             EECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH-
Confidence            764  488888999999999999999986654421          12222221      1      8999999999998 


Q ss_pred             hCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          143 DFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                       ..+.+++++++.+.+++. +++.+.+.+.+.+++.|++++.++.+.++             |+++++|.||+|+|++|+
T Consensus       167 -~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~  232 (385)
T 3klj_A          167 -DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPN  232 (385)
T ss_dssp             -HHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEEC
T ss_pred             -hCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccC
Confidence             458899999999988874 78889999999999999999999998877             567999999999999999


Q ss_pred             chhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          222 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .++++..++  ..+ +| +.||++++| +.|+|||+|||+..+..
T Consensus       233 ~~~~~~~gl--~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~  272 (385)
T 3klj_A          233 LDFIKDTEI--ASK-RG-ILVNDHMET-SIKDIYACGDVAEFYGK  272 (385)
T ss_dssp             CGGGTTSCC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETTB
T ss_pred             hhhhhhcCC--CcC-CC-EEECCCccc-CCCCEEEEEeeEecCCC
Confidence            999887766  333 44 999999999 89999999999987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.2e-33  Score=244.13  Aligned_cols=252  Identities=18%  Similarity=0.217  Sum_probs=184.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC------cccccccc---cc---------------c-cCCccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY------FEITWASL---RA---------------M-VEPSFG--   63 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~------~~~~~~~~---~~---------------~-~~~~~~--   63 (275)
                      .+|||+|||||++|+++|+.|+ .|++|+|||+++.      +|+.+...   +.               . ....+.  
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            3589999999999999999998 6999999999873      33221110   00               0 000000  


Q ss_pred             -----cccccccc------------cc--ccccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchH-
Q 023957           64 -----KRSVINHT------------DY--LVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR-  119 (275)
Q Consensus        64 -----~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~-  119 (275)
                           ........            ..  ..+++++.+....++..  .+...++  ..+.||++|+|||+.|..|+.. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence                 00000000            00  12567777777777665  4445556  5789999999999986643211 


Q ss_pred             --------HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957          120 --------TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  182 (275)
Q Consensus       120 --------~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  182 (275)
                              ......+..         +|.+++|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~  239 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWA--RLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL  239 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence                    112211111         8889999999998  568999999999999888889999999999999999999


Q ss_pred             cCceeeeecCCCCCceEEcCCC---cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecc
Q 023957          183 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  259 (275)
Q Consensus       183 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd  259 (275)
                      +++.|.+++.+++...+.+.++   +++++|.||+|+|++|+.+++.....+++++++|++.||++++| +.|+|||+||
T Consensus       240 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD  318 (476)
T 3lad_A          240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGD  318 (476)
T ss_dssp             ETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGG
T ss_pred             ECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEc
Confidence            9999999987777777776654   67999999999999999876544444557888999999999998 8999999999


Q ss_pred             ccCCCCC
Q 023957          260 ITDIRVS  266 (275)
Q Consensus       260 ~~~~~~~  266 (275)
                      |+..|..
T Consensus       319 ~~~~~~~  325 (476)
T 3lad_A          319 VVRGAML  325 (476)
T ss_dssp             GSSSCCC
T ss_pred             cCCCccc
Confidence            9976654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=9.1e-34  Score=244.75  Aligned_cols=251  Identities=19%  Similarity=0.175  Sum_probs=183.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc--------------------ccCCc-------ccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------------MVEPS-------FGK   64 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~--------------------~~~~~-------~~~   64 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||+++.+|+.|.....                    .....       ...
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   85 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL   85 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence            489999999999999999998 69999999999877654321100                    00000       000


Q ss_pred             ccccc------------ccccc--cccEEEEeeeeEeecC--eEEecC-C-eEEeCCEEEEccCCCCCCCchH-------
Q 023957           65 RSVIN------------HTDYL--VNGRIVASPAINITEN--EVLTAE-G-RRVVYDYLVIATGHKDPVPKTR-------  119 (275)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~-~-~~~~~~~lilatG~~~~~~~~~-------  119 (275)
                      .....            ..+++  .+++++.+....++..  .+.+.+ + ..+.||++|+|||+.|..|+..       
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~v  165 (474)
T 1zmd_A           86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI  165 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCcE
Confidence            00000            01111  2567777766666665  344455 4 5799999999999986655421       


Q ss_pred             --HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957          120 --TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       120 --~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                        ......+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++ .+++++.+.+.+.+++.||+++.+++|
T Consensus       166 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  243 (474)
T 1zmd_A          166 VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQ--RLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKV  243 (474)
T ss_dssp             ECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EcHHHHhhccccCceEEEECCCHHHHHHHHHHH--HcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceE
Confidence              11111111   1      8899999999998  46899999999999888 888899999999999999999999999


Q ss_pred             eeecCCCCC-ceEE-----cCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957          188 NLDSVSEGS-DTYL-----TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       188 ~~i~~~~~~-~~v~-----~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      ++++.+++. +.+.     ..+++++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+|||+|||+
T Consensus       244 ~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  322 (474)
T 1zmd_A          244 TGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQT-KIPNIYAIGDVV  322 (474)
T ss_dssp             EEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBC-SSTTEEECGGGS
T ss_pred             EEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCcc-CCCCEEEeeecC
Confidence            999876554 5555     356778999999999999999887432223346777899999999998 899999999999


Q ss_pred             CCCCC
Q 023957          262 DIRVS  266 (275)
Q Consensus       262 ~~~~~  266 (275)
                      ..+..
T Consensus       323 ~~~~~  327 (474)
T 1zmd_A          323 AGPML  327 (474)
T ss_dssp             SSCCC
T ss_pred             CCCcc
Confidence            86643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=6.8e-34  Score=244.89  Aligned_cols=245  Identities=19%  Similarity=0.219  Sum_probs=182.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc--------------------CCccccccc----
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV--------------------EPSFGKRSV----   67 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~--------------------~~~~~~~~~----   67 (275)
                      ++||+|||||++|+++|+.|+ .|++|+||||++.+|+.|.......                    ...+.....    
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK   83 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            589999999999999999998 6999999998888876543211000                    000000000    


Q ss_pred             ---------cccccc--ccccEEEEeeeeEeecC--eEEecCCeE--EeCCEEEEccCCCCCCCchH-------HHHHH-
Q 023957           68 ---------INHTDY--LVNGRIVASPAINITEN--EVLTAEGRR--VVYDYLVIATGHKDPVPKTR-------TERLN-  124 (275)
Q Consensus        68 ---------~~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~lilatG~~~~~~~~~-------~~~l~-  124 (275)
                               .....+  ..+++++.+.+..++..  .+...++..  +.||++|+|||+.|..|.++       ...+. 
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~~~  163 (466)
T 3l8k_A           84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG  163 (466)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHHHS
T ss_pred             HhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeHHHHHH
Confidence                     000111  12667777777777766  555667777  99999999999886655432       12222 


Q ss_pred             ---HHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC-CcchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957          125 ---QYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-GPKAGDKTRDWLISKKVDVKLGERVNLDS  191 (275)
Q Consensus       125 ---~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  191 (275)
                         .+..         +|.+++|+|..+.  ..+.+++++.+.+.+++.. ++++.+.+.+.++   ++++.++.|++++
T Consensus       164 ~~~~l~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~  238 (466)
T 3l8k_A          164 YKTSFRKLPQDMVIIGAGYIGLEIASIFR--LMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVK  238 (466)
T ss_dssp             TTCSCCSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEE
T ss_pred             HHHHHhhCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEE
Confidence               1111         8899999999998  5689999999999988877 8888888887775   9999999999998


Q ss_pred             CCC-CCceEEcC--CCc--EEeecEEEEcCCCCCCchh-hcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          192 VSE-GSDTYLTS--TGD--TINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       192 ~~~-~~~~v~~~--~g~--~~~~d~vv~a~G~~~~~~~-~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .++ +.+.+.+.  +|+  ++++|.||+|+|.+|+..+ +...  +++++++| +.||++++| +.|+|||+|||+..|.
T Consensus       239 ~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~--gl~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~~~  314 (466)
T 3l8k_A          239 KIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI--GLSISKTG-IVVDETMKT-NIPNVFATGDANGLAP  314 (466)
T ss_dssp             EEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGG--TCCBCSSS-BCCCTTCBC-SSTTEEECGGGTCSCC
T ss_pred             EcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhc--CceeCCCC-EeECCCccC-CCCCEEEEEecCCCCc
Confidence            765 56667776  666  8999999999999998873 3444  44778889 999999999 8999999999998754


Q ss_pred             C
Q 023957          266 S  266 (275)
Q Consensus       266 ~  266 (275)
                      .
T Consensus       315 ~  315 (466)
T 3l8k_A          315 Y  315 (466)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.2e-33  Score=229.80  Aligned_cols=239  Identities=18%  Similarity=0.200  Sum_probs=171.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCc-cc-ccc---cccccccccccEEEEeeeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FG-KRS---VINHTDYLVNGRIVASPAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~   86 (275)
                      ++||+|||||++|+++|+.|+ .|++|+|||++...+..+.......... .. ...   .......+.++.++..++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   81 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTD   81 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEE
Confidence            489999999999999999998 6999999999875543322211111111 00 000   11111122356777777777


Q ss_pred             eecC----eEEecCCeEEeCCEEEEccCCCCCCC---chHH---------HHHH--HHhc-------CCcchhhHHHHHh
Q 023957           87 ITEN----EVLTAEGRRVVYDYLVIATGHKDPVP---KTRT---------ERLN--QYQA-------GGPTGVELAGEIA  141 (275)
Q Consensus        87 ~~~~----~v~~~~~~~~~~~~lilatG~~~~~~---~~~~---------~~l~--~~~~-------~g~~~~~~a~~l~  141 (275)
                      ++..    .+.+.++..+.||++|+|||..|..|   +...         ....  .+..       +|.+++++|..+.
T Consensus        82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            7543    67777888899999999999985544   3211         0001  1111       7889999999998


Q ss_pred             hhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          142 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .  .+ +++++.+.+.       .+.+.+.+.+++.||+++. +.|++++.++   .+.+.+|+++++|.||+++|+.|+
T Consensus       162 ~--~g-~v~~v~~~~~-------~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          162 D--WG-ETTFFTNGIV-------EPDADQHALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             G--TS-EEEEECTTTC-------CCCHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECC
T ss_pred             h--cC-cEEEEECCCC-------CCCHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccC
Confidence            5  36 9999987765       3456677888899999995 8899997543   688889999999999999999998


Q ss_pred             chhhcccccccccCCCC-ceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          222 SDWLKDTILKDSLDTHG-MLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       222 ~~~~~~~~~~~~~~~~g-~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .++++..++.....++| ++.||++++| +.|+|||+|||+..|..
T Consensus       228 ~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~~~~  272 (297)
T 3fbs_A          228 VDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARPAGS  272 (297)
T ss_dssp             CSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCTTCC
T ss_pred             chhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCchHH
Confidence            88887766633222467 8999999998 89999999999986543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=7.2e-34  Score=245.61  Aligned_cols=251  Identities=19%  Similarity=0.256  Sum_probs=183.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c---------------cccCCcc-------ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R---------------AMVEPSF-------GKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~---------------~~~~~~~-------~~~   65 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||++. +|+.+...   +               ......+       ...
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   97 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR   97 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            3589999999999999999998 699999999875 44322110   0               0000000       000


Q ss_pred             ccccc------------ccc--ccccEEEEeeeeEeecC--eEEecCCeEEeCCEEEEccCCCCCCC---chH-------
Q 023957           66 SVINH------------TDY--LVNGRIVASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR-------  119 (275)
Q Consensus        66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~---~~~-------  119 (275)
                      ....+            ...  ..+++++.+.+..++..  .+. .++..+.||++|+|||+.|..|   .++       
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~~  176 (478)
T 3dk9_A           98 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGASLGIT  176 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGGGSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCceeEc
Confidence            00000            000  12567777776666544  444 4677899999999999987665   332       


Q ss_pred             HHHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957          120 TERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  190 (275)
Q Consensus       120 ~~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  190 (275)
                      .+.+..+..         +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+++.||+++.++.|+++
T Consensus       177 ~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i  254 (478)
T 3dk9_A          177 SDGFFQLEELPGRSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV  254 (478)
T ss_dssp             HHHHTTCCSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred             hHHhhchhhcCccEEEECCCHHHHHHHHHHH--HcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence            122222221         8899999999998  46899999999999888889999999999999999999999999999


Q ss_pred             cCCCCC--ceEEcCC-------CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957          191 SVSEGS--DTYLTST-------GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       191 ~~~~~~--~~v~~~~-------g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      +..++.  +.+.+.+       |+++++|.||+|+|++|+...+.....+++++++|++.||++++| +.|+|||+|||+
T Consensus       255 ~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  333 (478)
T 3dk9_A          255 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC  333 (478)
T ss_dssp             EECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGGGG
T ss_pred             EEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEecC
Confidence            866544  4566654       257999999999999999875433344457888999999999998 899999999999


Q ss_pred             CCCCCC
Q 023957          262 DIRVSA  267 (275)
Q Consensus       262 ~~~~~~  267 (275)
                      ..|...
T Consensus       334 ~~~~~~  339 (478)
T 3dk9_A          334 GKALLT  339 (478)
T ss_dssp             CSSCCH
T ss_pred             CCCccH
Confidence            666543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.4e-33  Score=240.23  Aligned_cols=244  Identities=19%  Similarity=0.259  Sum_probs=173.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc-----------c--------cCC--ccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA-----------M--------VEP--SFGKRSV   67 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~-----------~--------~~~--~~~~~~~   67 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||++. +|+.|...   +.           .        ...  ......+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            489999999999999999998 699999999986 44332110   00           0        000  0000000


Q ss_pred             c--------c----cccc--ccccEEEEeeeeEeecCeEEecC-------------CeEEeCCEEEEccCCCCCCCchH-
Q 023957           68 I--------N----HTDY--LVNGRIVASPAINITENEVLTAE-------------GRRVVYDYLVIATGHKDPVPKTR-  119 (275)
Q Consensus        68 ~--------~----~~~~--~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~~~lilatG~~~~~~~~~-  119 (275)
                      .        .    ....  ..+++++.+.+..++.+.+...+             +..+.||++|+|||+.|..|.++ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence            0        0    0011  12567777666656655554433             56789999999999997766432 


Q ss_pred             ------HHHHHHHh--c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCc
Q 023957          120 ------TERLNQYQ--A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  185 (275)
Q Consensus       120 ------~~~l~~~~--~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~  185 (275)
                            .+.+..+.  +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||++++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~  238 (500)
T 1onf_A          161 IENTISSDEFFNIKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFA  238 (500)
T ss_dssp             GGGCEEHHHHTTCCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSC
T ss_pred             CCcccCHHHHhccCCCCeEEEECChHHHHHHHHHHH--HcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECC
Confidence                  11221111  1      7899999999998  668999999999998888899999999999999999999999


Q ss_pred             eeeeecCCCC-CceEEcCCCcE-EeecEEEEcCCCCCCchhh--cccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957          186 RVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       186 ~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                      .|++++.+++ ...+.+.+|++ +++|.||+|+|.+|+.+.+  +..++  ++ ++|++.||+++|| +.|+|||+|||+
T Consensus       239 ~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~--~~-~~G~i~vd~~~~t-~~~~iya~GD~~  314 (500)
T 1onf_A          239 DVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNV--ET-NNNYIVVDENQRT-SVNNIYAVGDCC  314 (500)
T ss_dssp             CEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTC--CB-SSSCEEECTTCBC-SSSSEEECSTTE
T ss_pred             EEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCc--cc-cCCEEEECCCccc-CCCCEEEEeccc
Confidence            9999986543 36778888987 9999999999999998644  44444  56 6899999999998 899999999999


Q ss_pred             CC
Q 023957          262 DI  263 (275)
Q Consensus       262 ~~  263 (275)
                      ..
T Consensus       315 ~~  316 (500)
T 1onf_A          315 MV  316 (500)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.3e-33  Score=243.61  Aligned_cols=252  Identities=19%  Similarity=0.210  Sum_probs=183.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc-----------------------cC---Ccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----------------------VE---PSFGK   64 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~-----------------------~~---~~~~~   64 (275)
                      .++||+|||||++|+++|..|+ .|++|+|||+++.+|+.+......                       ..   .....
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            4689999999999999999998 699999999997776543211000                       00   00000


Q ss_pred             ccccc------------ccccc--cccEEEEeeeeEeecCeE--EecCC--eEEeCCEEEEccCCCCCCCchH-------
Q 023957           65 RSVIN------------HTDYL--VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTR-------  119 (275)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~lilatG~~~~~~~~~-------  119 (275)
                      .....            ...++  .+++++.+....++.+.+  .+.++  ..+.||++|+|||+.|..|+..       
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v  164 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI  164 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccE
Confidence            00000            00111  256777666666666543  33456  6899999999999986655421       


Q ss_pred             --HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceee
Q 023957          120 --TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN  188 (275)
Q Consensus       120 --~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  188 (275)
                        ......+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++++++|.
T Consensus       165 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  242 (470)
T 1dxl_A          165 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVV  242 (470)
T ss_dssp             ECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred             EeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence              11111111   1      7899999999998  458899999999998888888999999999999999999999999


Q ss_pred             eecCCCCCceEEcC---CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          189 LDSVSEGSDTYLTS---TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       189 ~i~~~~~~~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      +++.+++.+.+.+.   +|  +++++|.||+|+|.+|+.+++.....+++++++|+|.||++++| +.|+|||+|||+..
T Consensus       243 ~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~  321 (470)
T 1dxl_A          243 GVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPG  321 (470)
T ss_dssp             EEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSSS
T ss_pred             EEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCCC
Confidence            99876655666654   44  68999999999999999888433333446777899999999998 89999999999986


Q ss_pred             CCC
Q 023957          264 RVS  266 (275)
Q Consensus       264 ~~~  266 (275)
                      +..
T Consensus       322 ~~~  324 (470)
T 1dxl_A          322 PML  324 (470)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=3.8e-32  Score=231.62  Aligned_cols=251  Identities=24%  Similarity=0.239  Sum_probs=173.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   88 (275)
                      ++|+|||||+||+++|.+|+   ++++|+|||+++++.+.+.............+...+..+++.  +++++.+++..++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            58999999999999999997   358999999999876643322111111112223333444433  6888999998887


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCC--CCCchH--------H-------HHHHHHhc-------CCcchh-------h
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKD--PVPKTR--------T-------ERLNQYQA-------GGPTGV-------E  135 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~--~~~~~~--------~-------~~l~~~~~-------~g~~~~-------~  135 (275)
                      ..  +|.+++|+++.||+||+|||+.+  .+|+..        .       +.++.+..       ++..++       |
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e  162 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYE  162 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHH
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHH
Confidence            54  89999999999999999999873  344422        1       11222221       222222       3


Q ss_pred             HHHHHhh----hC--CCCEEEEEeCCCcccC---cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC--
Q 023957          136 LAGEIAV----DF--PEKKVTLVHKGSRLLE---FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--  204 (275)
Q Consensus       136 ~a~~l~~----~~--~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--  204 (275)
                      .+..+..    ..  ...+++++...+.+..   ...+...+.+.+.++++||++++++.|++++.  +...+...+|  
T Consensus       163 ~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~~~~~~~~g~~  240 (430)
T 3hyw_A          163 FALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DKVIYEDLNGNT  240 (430)
T ss_dssp             HHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SEEEEECTTSCE
T ss_pred             HHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--CceEEEeeCCCc
Confidence            3322221    11  1357888887765432   34455677788899999999999999999974  3444554444  


Q ss_pred             cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          205 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       205 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +++++|.+++++|.+|+ +++...+..+..+.+|++.||+++|++++|+|||+|||+..|+..
T Consensus       241 ~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~  302 (430)
T 3hyw_A          241 HEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE  302 (430)
T ss_dssp             EEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS
T ss_pred             eEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcc
Confidence            48999999999999985 666666654455566789999999977999999999999988643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.4e-33  Score=242.37  Aligned_cols=250  Identities=21%  Similarity=0.243  Sum_probs=181.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c--------------------ccc--CCcccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R--------------------AMV--EPSFGKRS   66 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~--------------------~~~--~~~~~~~~   66 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||++ .+|+.+...   +                    +..  ........
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   81 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            479999999999999999998 69999999998 444332110   0                    000  00000000


Q ss_pred             ccc------------ccccc--cccEEEEeeeeEeecC--eEEecCC-eEEeCCEEEEccCCCCCCCchH--------HH
Q 023957           67 VIN------------HTDYL--VNGRIVASPAINITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPKTR--------TE  121 (275)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~~-~~~~~~~lilatG~~~~~~~~~--------~~  121 (275)
                      ...            ..+++  .+++++.+....++.+  .+.+.++ ..+.||++|+|||+.|..|+..        ..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~  161 (455)
T 1ebd_A           82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDST  161 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHH
Confidence            000            00111  2567777766666655  4444556 6789999999999986655421        12


Q ss_pred             HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      ....+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++.
T Consensus       162 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          162 GALNLGEVPKSLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             HHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEE
T ss_pred             HHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            222211   1      7899999999998  4689999999999888888888999999999999999999999999986


Q ss_pred             CCCCceEEcC---CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          193 SEGSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       193 ~~~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +++.+.+.+.   +++++++|.||+|+|.+|+.+++.....+++++++|++.||+++|| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~  315 (455)
T 1ebd_A          240 REDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGPAL  315 (455)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSSCCC
T ss_pred             eCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCCccc
Confidence            6555555554   4568999999999999999887432333446777899999999998 89999999999986543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=4.1e-32  Score=240.21  Aligned_cols=248  Identities=21%  Similarity=0.367  Sum_probs=185.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCccc--ccccccccc-cc--cccEEE-Ee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTD-YL--VNGRIV-AS   82 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~-~~   82 (275)
                      +++||+|||||+||++||++|+ .  |++|+|||+++.+++....++........  ........+ +.  .++.+. ..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            4589999999999999999997 4  89999999999887655443332222111  111111111 11  145553 35


Q ss_pred             eeeEeecC--eEEe---cCCe--EEeCCEEEEccCCCCCCCc---h-H------------HHHHHH----Hh-c------
Q 023957           83 PAINITEN--EVLT---AEGR--RVVYDYLVIATGHKDPVPK---T-R------------TERLNQ----YQ-A------  128 (275)
Q Consensus        83 ~~~~~~~~--~v~~---~~~~--~~~~~~lilatG~~~~~~~---~-~------------~~~l~~----~~-~------  128 (275)
                      .+..++..  .+.+   .++.  .+.||++++|||+.|..|.   . +            ...+..    .. +      
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViG  194 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIG  194 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEEC
Confidence            55566533  4444   2454  6889999999998855443   2 1            111111    11 1      


Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  208 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  208 (275)
                      +|.+|+|+|..+.  ..+.+++++.+.+.+++.+++++.+.+.+.+++.|++++.++.|++++.+++  .+.+.+|++++
T Consensus       195 gG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~  270 (588)
T 3ics_A          195 GGFIGVEMVENLR--ERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVIQ  270 (588)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEEE
T ss_pred             CCHHHHHHHHHHH--hCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEEE
Confidence            8899999999998  5689999999999988888889999999999999999999999999976543  57778898999


Q ss_pred             ecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +|.||+|+|++|+.++++..++  +++++|++.||++++| +.|+|||+|||+..++.
T Consensus       271 ~D~Vi~a~G~~p~~~~l~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  325 (588)
T 3ics_A          271 TDMLILAIGVQPESSLAKGAGL--ALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDF  325 (588)
T ss_dssp             CSEEEECSCEEECCHHHHHTTC--CBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBT
T ss_pred             cCEEEEccCCCCChHHHHhcCc--eEcCCCCEEECCcccc-CCCCEEEeeeeeecccc
Confidence            9999999999999888776655  6778899999999999 89999999999976553

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=5.5e-32  Score=227.63  Aligned_cols=246  Identities=20%  Similarity=0.261  Sum_probs=178.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCccccccccccccCCccc-ccccccc-cccc--cccEEEE-ee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH-TDYL--VNGRIVA-SP   83 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~~~~~~~-~~   83 (275)
                      .++||+|||||++|+++|..|+ .|  .+|+++|++....+....+......... ....... ..+.  .+++++. ..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   82 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTR   82 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCE
Confidence            3589999999999999999998 46  5799999987332222222222211111 1111111 1111  2566654 34


Q ss_pred             eeEeec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHH----H--hc------CCcchhhHH
Q 023957           84 AINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQ----Y--QA------GGPTGVELA  137 (275)
Q Consensus        84 ~~~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~----~--~~------~g~~~~~~a  137 (275)
                      +..++.  +.+.+++ ..+.||++++|||+.|..|+++            ...+..    +  .+      +|.+|+|+|
T Consensus        83 v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A  161 (384)
T 2v3a_A           83 VTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFA  161 (384)
T ss_dssp             CCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHH
T ss_pred             EEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHH
Confidence            555654  4677654 5799999999999986654321            111111    1  11      889999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcC
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCT  216 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~  216 (275)
                      ..+.  ..+.+++++++.+.+++. .++.+.+.+.+.+++.|++++.+++|++++.+++...+.+.+|+++++|.||+|+
T Consensus       162 ~~l~--~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~  239 (384)
T 2v3a_A          162 NDLS--SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAV  239 (384)
T ss_dssp             HHHH--HTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECS
T ss_pred             HHHH--hCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECc
Confidence            9998  468999999999887765 4777889999999999999999999999987666677888899999999999999


Q ss_pred             CCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          217 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       217 G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      |.+|+.++++..++  +++ +| +.||++++| +.|+|||+|||+..+.
T Consensus       240 G~~p~~~l~~~~g~--~~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~~~  283 (384)
T 2v3a_A          240 GLRPRTELAFAAGL--AVN-RG-IVVDRSLRT-SHANIYALGDCAEVDG  283 (384)
T ss_dssp             CEEECCHHHHHTTC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETT
T ss_pred             CCCcCHHHHHHCCC--CCC-CC-EEECCCCCC-CCCCEEEeeeeeeECC
Confidence            99999888776665  454 57 999999998 8999999999996543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=2.5e-33  Score=243.18  Aligned_cols=252  Identities=19%  Similarity=0.173  Sum_probs=188.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Ccccc---cc-----ccc------ccc---CC--c---
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEIT---WA-----SLR------AMV---EP--S---   61 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~---~~-----~~~------~~~---~~--~---   61 (275)
                      .|||+||||||+|+.||.+++ .|.+|+|||+..        .+|+.   ++     .+.      ...   ..  .   
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            489999999999999999998 699999999754        23421   00     000      000   00  0   


Q ss_pred             ----cccccccccc------------ccc--cccEEEEeeeeEeecCeEEe------cCCeEEeCCEEEEccCCCCCCCc
Q 023957           62 ----FGKRSVINHT------------DYL--VNGRIVASPAINITENEVLT------AEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        62 ----~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~lilatG~~~~~~~  117 (275)
                          +....+..+.            ..+  .+++++.+.....+.+++..      .+.+.+.++++++|||+.|.+|+
T Consensus       122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~  201 (542)
T 4b1b_A          122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPD  201 (542)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCS
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCC
Confidence                0000000000            001  25788888888888886643      13357899999999999988874


Q ss_pred             h-H--------HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCC
Q 023957          118 T-R--------TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  179 (275)
Q Consensus       118 ~-~--------~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  179 (275)
                      . .        .+.+-.+.   +      +|++|+|+|..+.  ..|.+|+++.+ +.+++.+++++.+.+.+.+++.|+
T Consensus       202 ~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~--~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          202 DVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLN--SLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             SSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHH--hcCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence            2 1        11121111   1      9999999999998  57999999987 466788899999999999999999


Q ss_pred             EEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCce-EeCCCccccCCCCeEEec
Q 023957          180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML-MVDENLRVKGQKNIFAIG  258 (275)
Q Consensus       180 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i-~v~~~~~~~~~~~v~a~G  258 (275)
                      ++++++.+..++..++.+.+.+.+++++.+|.|++|+|.+||.+.+.....++.++.++.+ .+|+++|| +.|+|||+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiG  357 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVG  357 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECT
T ss_pred             eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEec
Confidence            9999999999998888888888899899999999999999999998887777777776654 78889998 899999999


Q ss_pred             cccCC-CCCCC
Q 023957          259 DITDI-RVSAS  268 (275)
Q Consensus       259 d~~~~-~~~~~  268 (275)
                      ||+.. |..++
T Consensus       358 Dv~~~~p~La~  368 (542)
T 4b1b_A          358 DVAENVPELAP  368 (542)
T ss_dssp             TSBTTCCCCHH
T ss_pred             cccCCchhHHH
Confidence            99953 55543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=5.1e-33  Score=238.88  Aligned_cols=251  Identities=20%  Similarity=0.235  Sum_probs=184.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc---c-------------------cc--CCccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---A-------------------MV--EPSFGKRSV   67 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~---~-------------------~~--~~~~~~~~~   67 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||+++.+|+.+....   .                   ..  ........+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            379999999999999999998 6999999999977765432110   0                   00  000000000


Q ss_pred             ccc------------cccc--cccEEEEeeeeEeecCeEEec-CCeEEeCCEEEEccCCCCCCCchH---------HHHH
Q 023957           68 INH------------TDYL--VNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPKTR---------TERL  123 (275)
Q Consensus        68 ~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~lilatG~~~~~~~~~---------~~~l  123 (275)
                      ..+            ..++  .+++++.+....++.+.+... ++..+.||++|+|||+.|..|+..         ...+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~  160 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEA  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHh
Confidence            000            0111  256777766666665554443 467899999999999986654321         1111


Q ss_pred             HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      ..+.   +      +|.+|+++|..+.  ..+.+++++++.+.+++..++.+.+.+.+.+++.|++++.+++|++++.++
T Consensus       161 ~~~~~~~~~vvIiGgG~~g~e~A~~l~--~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          161 LSFPEVPKRLIVVGGGVIGLELGVVWH--RLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            1111   1      8889999999998  468899999999988888888899999999999999999999999998766


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +.+.+.+.+|+++++|.||+|+|.+|+.+++.....++.++++|++.||++++| +.|+||++|||+..+..
T Consensus       239 ~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~  309 (455)
T 2yqu_A          239 KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRGPML  309 (455)
T ss_dssp             TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSSCCC
T ss_pred             CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCccc-CCCCEEEEecCCCCccC
Confidence            666777778889999999999999998877432333446677899999999998 89999999999987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.3e-32  Score=238.06  Aligned_cols=247  Identities=16%  Similarity=0.090  Sum_probs=177.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC---------Cccccccccc-----------------------cc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE---------YFEITWASLR-----------------------AM   57 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~---------~~~~~~~~~~-----------------------~~   57 (275)
                      ..++||+|||||++|++||++|+ .|++|+||||..         .+|+.+....                       +.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            34699999999999999999998 699999999521         1343321110                       00


Q ss_pred             cC---Cccccccccccc------------cc--ccccEEEEeeeeEeecCe--EEecCC-eEEeCCEEEEccCCCCCCCc
Q 023957           58 VE---PSFGKRSVINHT------------DY--LVNGRIVASPAINITENE--VLTAEG-RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        58 ~~---~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~lilatG~~~~~~~  117 (275)
                      ..   ..........+.            ..  ..+++++.+....++...  +.+.++ ..+.||++|+|||+.|..|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~  166 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPD  166 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCS
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCC
Confidence            00   000000000000            00  125677777777777664  444455 47999999999999877665


Q ss_pred             hHHH--------HHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957          118 TRTE--------RLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  180 (275)
Q Consensus       118 ~~~~--------~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  180 (275)
                      ++..        .+..+..         +|.+++|+|..+.  ..+.+++++.+. .+++.+++++.+.+.+.+++.||+
T Consensus       167 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~Gv~  243 (483)
T 3dgh_A          167 IPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLK--GLGYEPTVMVRS-IVLRGFDQQMAELVAASMEERGIP  243 (483)
T ss_dssp             STTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHH--HcCCEEEEEeCC-CCCcccCHHHHHHHHHHHHhCCCE
Confidence            4321        1111111         8899999999998  468999999884 567778888999999999999999


Q ss_pred             EEcCceeeeecCCCC-CceEEcCCCc-----EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCe
Q 023957          181 VKLGERVNLDSVSEG-SDTYLTSTGD-----TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI  254 (275)
Q Consensus       181 i~~~~~v~~i~~~~~-~~~v~~~~g~-----~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v  254 (275)
                      +++++.|.+++..++ .+.+.+.+++     ++++|.|++|+|.+|+.+++.....++++++ |++.||++++| +.|+|
T Consensus       244 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~I  321 (483)
T 3dgh_A          244 FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANI  321 (483)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTE
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCE
Confidence            999999999986543 4556665543     7999999999999999888744444557777 99999999998 89999


Q ss_pred             EEeccccC
Q 023957          255 FAIGDITD  262 (275)
Q Consensus       255 ~a~Gd~~~  262 (275)
                      ||+|||+.
T Consensus       322 yA~GD~~~  329 (483)
T 3dgh_A          322 YAVGDIIY  329 (483)
T ss_dssp             EECSTTBT
T ss_pred             EEEEcccC
Confidence            99999984

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=3.7e-33  Score=240.28  Aligned_cols=250  Identities=17%  Similarity=0.166  Sum_probs=180.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc---------------cc-CCcc------cccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA---------------MV-EPSF------GKRS   66 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~---------------~~-~~~~------~~~~   66 (275)
                      ++||+|||||++|+++|..|+ .|++|+|||++ .+|+.+...   +.               .. ....      ....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence            479999999999999999998 69999999998 444222100   00               00 0000      0000


Q ss_pred             ccc------------ccccc--cccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchH--------H
Q 023957           67 VIN------------HTDYL--VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR--------T  120 (275)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~--------~  120 (275)
                      ...            ..+.+  .+++++.+....++.+  .+.+.++  ..+.||++|+|||+.|..|+..        .
T Consensus        82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~  161 (464)
T 2a8x_A           82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTY  161 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEec
Confidence            000            00111  2566666655555544  4455566  6899999999999986554321        1


Q ss_pred             HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957          121 ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  191 (275)
Q Consensus       121 ~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  191 (275)
                      .....+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.++.|++++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          162 EEQILSRELPKSIIIAGAGAIGMEFGYVLK--NYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             HHHhhccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence            1221211   1      7899999999998  468999999999998888888999999999999999999999999998


Q ss_pred             CCCCCceEEcC-CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          192 VSEGSDTYLTS-TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       192 ~~~~~~~v~~~-~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .+++.+.+.+. +|  +++++|.||+|+|.+|+.+++.....+++++++|+|.||+++|| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~  316 (464)
T 2a8x_A          240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDVNGLLQL  316 (464)
T ss_dssp             ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBC-SSTTEEECGGGGCSSCS
T ss_pred             EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEeECcCCCccC
Confidence            76655666654 56  67999999999999999887432223346777899999999998 89999999999986543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.2e-32  Score=239.69  Aligned_cols=247  Identities=15%  Similarity=0.147  Sum_probs=175.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Ccccccccc---c--------------------cccC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWASL---R--------------------AMVE   59 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~~~~~---~--------------------~~~~   59 (275)
                      ..+||+|||||++|++||..|+ .|++|+|||+++        .+|+.+...   +                    +...
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            3589999999999999999998 699999999964        444332111   0                    0000


Q ss_pred             ---Ccccccccccccc------------c--ccccEEEEeeeeEeecCeE--EecCCe--EEeCCEEEEccCCCCCCCch
Q 023957           60 ---PSFGKRSVINHTD------------Y--LVNGRIVASPAINITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        60 ---~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~~~~lilatG~~~~~~~~  118 (275)
                         ..........+.+            .  ..+++++.+.+..++...+  ...++.  .+.||++|+|||+.|..|.+
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i  190 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGI  190 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCC
Confidence               0000000000000            0  1257778888777777744  344453  78999999999998776654


Q ss_pred             HHHH-----HHHHhc------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEE
Q 023957          119 RTER-----LNQYQA------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  181 (275)
Q Consensus       119 ~~~~-----l~~~~~------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  181 (275)
                      +...     ...+..            +|.+|+|+|..+.  ..+.+++++.+. .+++.+++++.+.+.+.+++.||++
T Consensus       191 ~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v  267 (519)
T 3qfa_A          191 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKF  267 (519)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEE
Confidence            3211     111111            8899999999998  458899999985 6777888899999999999999999


Q ss_pred             EcCceeeeecCCC----CCceEE--cCCC-c--EEeecEEEEcCCCCCCchhhcccccccccC-CCCceEeCCCccccCC
Q 023957          182 KLGERVNLDSVSE----GSDTYL--TSTG-D--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQ  251 (275)
Q Consensus       182 ~~~~~v~~i~~~~----~~~~v~--~~~g-~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~  251 (275)
                      ++++.+.+++..+    +.+.+.  ..+| +  ++++|.|++|+|.+|+.+++.....+++++ .+|+|.||++++| +.
T Consensus       268 ~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s~  346 (519)
T 3qfa_A          268 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NV  346 (519)
T ss_dssp             EESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-SS
T ss_pred             EeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-CC
Confidence            9998877776432    233333  3455 2  578999999999999988754444455777 5799999999998 89


Q ss_pred             CCeEEeccccC
Q 023957          252 KNIFAIGDITD  262 (275)
Q Consensus       252 ~~v~a~Gd~~~  262 (275)
                      |+|||+|||+.
T Consensus       347 ~~IyA~GD~~~  357 (519)
T 3qfa_A          347 PYIYAIGDILE  357 (519)
T ss_dssp             TTEEECGGGBS
T ss_pred             CCEEEEEeccC
Confidence            99999999983

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=6.7e-33  Score=239.98  Aligned_cols=247  Identities=17%  Similarity=0.117  Sum_probs=177.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcC--------CCCccccccccc-----------------------ccc-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP--------KEYFEITWASLR-----------------------AMV-   58 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~--------~~~~~~~~~~~~-----------------------~~~-   58 (275)
                      .++||+|||||++|++||..|+ .|++|+||||        ...+|+.|....                       +.. 
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            4589999999999999999998 6999999997        334554332110                       000 


Q ss_pred             --CCccccccccccc------------cc--ccccEEEEeeeeEeecCe--EEecCC--eEEeCCEEEEccCCCCCCCc-
Q 023957           59 --EPSFGKRSVINHT------------DY--LVNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK-  117 (275)
Q Consensus        59 --~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~~lilatG~~~~~~~-  117 (275)
                        ...........+.            ..  ..+++++.+.+..++.+.  +...++  ..+.||++|+|||+.|..|. 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence              0000000000000            00  125677877777777664  444455  57899999999999876655 


Q ss_pred             hHHHH-----HHHHhc------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957          118 TRTER-----LNQYQA------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  180 (275)
Q Consensus       118 ~~~~~-----l~~~~~------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  180 (275)
                      ++...     ...+..            +|.+++|+|..+.  ..+.+++++.+. .+++.+++++.+.+.+.+++.||+
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLT--GIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            33111     111111            8899999999998  468999999986 456778889999999999999999


Q ss_pred             EEcCceeeeecCC-CCCceEEcCC---Cc--EEeecEEEEcCCCCCCchhhcccccccccC-CCCceEeCCCccccCCCC
Q 023957          181 VKLGERVNLDSVS-EGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQKN  253 (275)
Q Consensus       181 i~~~~~v~~i~~~-~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~~~  253 (275)
                      +++++.+.+++.. ++...+.+.+   |+  ++++|.|++|+|++|+.+++.....+++++ ++|++.||++++| +.|+
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~  320 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPH  320 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCC
Confidence            9999999999764 3345555543   54  579999999999999998865444555778 7899999999998 8999


Q ss_pred             eEEeccccC
Q 023957          254 IFAIGDITD  262 (275)
Q Consensus       254 v~a~Gd~~~  262 (275)
                      |||+|||+.
T Consensus       321 IyA~GD~~~  329 (488)
T 3dgz_A          321 IYAIGDVAE  329 (488)
T ss_dssp             EEECGGGBT
T ss_pred             EEEeEEecC
Confidence            999999984

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.98  E-value=1.1e-31  Score=232.38  Aligned_cols=251  Identities=20%  Similarity=0.237  Sum_probs=182.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCcccccccccccc-C---Cc------------------c-ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMV-E---PS------------------F-GKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~-~---~~------------------~-~~~   65 (275)
                      .++||+|||||+||++||..|+ .  +.+|+|||+++.+++....+...+ .   ..                  + ...
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            3589999999999999999886 3  899999999987665332221111 0   00                  0 000


Q ss_pred             cccccccc----ccccEEEEe-eeeEee--cCeEEecCCeEEeCCEEEEccCCCCCCCchHH----H------------H
Q 023957           66 SVINHTDY----LVNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----E------------R  122 (275)
Q Consensus        66 ~~~~~~~~----~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~----~------------~  122 (275)
                      .......+    ..+++++.+ .+..++  .+++.+.++..+.||+|++|||+.|..|+...    .            .
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d  169 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGD  169 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHH
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHH
Confidence            00000011    125677665 666666  45888888889999999999999987665321    0            1


Q ss_pred             ---HHHHh---c------CCcchhhHHHHHhhhC--CCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957          123 ---LNQYQ---A------GGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       123 ---l~~~~---~------~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                         +....   +      +|.+|+|+|..+....  .+.+++++.+.+.++. .+++.+.+.+.+.+++.||++++++.|
T Consensus       170 ~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V  249 (493)
T 1m6i_A          170 FRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV  249 (493)
T ss_dssp             HHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             HHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEE
Confidence               11110   1      8899999999987421  3678999988765543 456678888999999999999999999


Q ss_pred             eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCC-CCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      ++++.+++.+.+.+.+|++++||.||+|+|.+|+..+++..++  ++++ +|++.||+++++  .|+|||+|||+..+..
T Consensus       250 ~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl--~~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~~  325 (493)
T 1m6i_A          250 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL--EIDSDFGGFRVNAELQA--RSNIWVAGDAACFYDI  325 (493)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC--CBCTTTCSEECCTTCEE--ETTEEECGGGEEEEET
T ss_pred             EEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC--ccccCCCcEEECCCccc--CCCeeEeeeeEeccCc
Confidence            9998655556788889999999999999999999888876665  5554 589999999997  5999999999986543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.98  E-value=1.4e-31  Score=231.18  Aligned_cols=248  Identities=18%  Similarity=0.269  Sum_probs=179.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCcc--cccccccccccc---cccEEEE-ee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYL---VNGRIVA-SP   83 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~-~~   83 (275)
                      ++||+|||||++|+++|..|++   |.+|+|||+++..++....++.......  .........+.+   .+++++. ..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4799999999999999999973   8999999999877644332222211111  111111111111   1566654 45


Q ss_pred             eeEeec--CeEEec---CCe--EEeCCEEEEccCCCCCCCchH------------HH---HHHH-Hh--c--------CC
Q 023957           84 AINITE--NEVLTA---EGR--RVVYDYLVIATGHKDPVPKTR------------TE---RLNQ-YQ--A--------GG  130 (275)
Q Consensus        84 ~~~~~~--~~v~~~---~~~--~~~~~~lilatG~~~~~~~~~------------~~---~l~~-~~--~--------~g  130 (275)
                      +..++.  +.+.+.   ++.  .+.||++|+|||+.|..|.++            .+   .+.. +.  .        +|
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            556653  355443   355  789999999999886544321            11   1222 11  1        78


Q ss_pred             cchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeec
Q 023957          131 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINAD  210 (275)
Q Consensus       131 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d  210 (275)
                      .+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++.+++...+.+. +.++++|
T Consensus       196 ~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D  272 (480)
T 3cgb_A          196 AIGLEMAETFV--ELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKAD  272 (480)
T ss_dssp             HHHHHHHHHHH--HTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECS
T ss_pred             HHHHHHHHHHH--hcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcC
Confidence            89999999998  46899999999988888888889999999999999999999999999865322234444 4579999


Q ss_pred             EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .||+|+|.+|+.++++..++  +++++|++.||++++| +.|+|||+|||+..+..
T Consensus       273 ~vi~a~G~~p~~~~l~~~g~--~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~~  325 (480)
T 3cgb_A          273 LVLVSVGVKPNTDFLEGTNI--RTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHV  325 (480)
T ss_dssp             EEEECSCEEESCGGGTTSCC--CBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEBT
T ss_pred             EEEECcCCCcChHHHHhCCc--ccCCCCCEEECCCccC-CCCCEEEeeeEEEecCC
Confidence            99999999999888876655  6677899999999999 89999999999976653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.98  E-value=6.6e-33  Score=239.68  Aligned_cols=250  Identities=17%  Similarity=0.216  Sum_probs=180.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc-------------------cccCCccc--------
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-------------------AMVEPSFG--------   63 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~-------------------~~~~~~~~--------   63 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||+++.+|+.+....                   ........        
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            3589999999999999999998 6999999999877764432110                   00000000        


Q ss_pred             cccccc------------ccccc--cccEEEEeeeeEeecC--eEEecCC--eE------EeCCEEEEccCCCCC-CCch
Q 023957           64 KRSVIN------------HTDYL--VNGRIVASPAINITEN--EVLTAEG--RR------VVYDYLVIATGHKDP-VPKT  118 (275)
Q Consensus        64 ~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~------~~~~~lilatG~~~~-~~~~  118 (275)
                      ......            ....+  .+++++.+.....+..  .+.+.++  ..      +.||++|+|||+.|. +|+.
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~  163 (478)
T 1v59_A           84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGI  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCC
Confidence            000000            00011  2566666655554444  3444455  45      899999999998753 3322


Q ss_pred             H--------HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEE
Q 023957          119 R--------TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  181 (275)
Q Consensus       119 ~--------~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  181 (275)
                      +        ......+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||++
T Consensus       164 ~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i  241 (478)
T 1v59_A          164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYS--RLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDF  241 (478)
T ss_dssp             CCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHH--HcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEE
Confidence            1        11111111   1      8899999999998  56899999999999888888889999999999999999


Q ss_pred             EcCceeeeecC--CCCCceEEcC-----CCcEEeecEEEEcCCCCCCch--hhcccccccccCCCCceEeCCCccccCCC
Q 023957          182 KLGERVNLDSV--SEGSDTYLTS-----TGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQK  252 (275)
Q Consensus       182 ~~~~~v~~i~~--~~~~~~v~~~-----~g~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~i~v~~~~~~~~~~  252 (275)
                      +.++.|++++.  +++...+.+.     +++++++|.||+|+|.+|+.+  +++..++  +++++|+|.||++++| +.|
T Consensus       242 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~  318 (478)
T 1v59_A          242 KLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL--EVDKRGRLVIDDQFNS-KFP  318 (478)
T ss_dssp             ECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTC--CBCTTSCBCCCTTSBC-SST
T ss_pred             EeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCc--eeCCCCCEeECcCCcc-CCC
Confidence            99999999986  4444556554     456899999999999999987  5555554  6777899999999998 899


Q ss_pred             CeEEeccccCCCCC
Q 023957          253 NIFAIGDITDIRVS  266 (275)
Q Consensus       253 ~v~a~Gd~~~~~~~  266 (275)
                      +|||+|||+..+..
T Consensus       319 ~IyA~GD~~~~~~~  332 (478)
T 1v59_A          319 HIKVVGDVTFGPML  332 (478)
T ss_dssp             TEEECGGGSSSCCC
T ss_pred             CEEEeeccCCCccc
Confidence            99999999986643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.98  E-value=1.5e-32  Score=232.61  Aligned_cols=247  Identities=22%  Similarity=0.224  Sum_probs=174.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCcccccccccccccc-cccEEEEeeeeEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPAINIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (275)
                      .++|+|||||+||+++|.+|+   ++.+|+|||+++.+.+.......................+. .+++++.+++..++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            368999999999999999997   35799999999876544322111111111111111222221 36888999888887


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCCchH-------------------H----HHHHHHhc--------------C
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR-------------------T----ERLNQYQA--------------G  129 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~-------------------~----~~l~~~~~--------------~  129 (275)
                      ..  .+.+.++.++.||+|++|||+.+..+.++                   .    +.++.+..              +
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~  161 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC  161 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence            54  78889999999999999999874432211                   1    11222211              1


Q ss_pred             Ccc----hhhHHHHHhhhCCCCEEEEEeCCCcccC--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC
Q 023957          130 GPT----GVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  203 (275)
Q Consensus       130 g~~----~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  203 (275)
                      +..    +++++..+.......+++++...+.+..  .+++.+.+.+.+.+++.|++++.++.+..++.+.+...+.+++
T Consensus       162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~  241 (401)
T 3vrd_B          162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSF  241 (401)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETT
T ss_pred             ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCC
Confidence            112    2355555555566789999988876532  3334444455555678899999999999998877788899999


Q ss_pred             CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCC
Q 023957          204 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       204 g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~  263 (275)
                      |+++++|.+++++|.+|+ .++...++   .+++|++.||++ +|++++|+|||+|||++.
T Consensus       242 g~~i~~D~vi~~~g~~~~-~~~~~~gl---~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~  298 (401)
T 3vrd_B          242 GETFKAAVINLIPPQRAG-KIAQSASL---TNDSGWCPVDIRTFESSLQPGIHVIGDACNA  298 (401)
T ss_dssp             SCEEECSEEEECCCEEEC-HHHHHTTC---CCTTSSBCBCTTTCBBSSSTTEEECGGGBCC
T ss_pred             CcEEEeeEEEEecCcCCc-hhHhhccc---cccCCCEEECCCcceecCCCCEEEecccccC
Confidence            999999999999999985 67777765   467899999987 777799999999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.98  E-value=4.3e-31  Score=226.40  Aligned_cols=245  Identities=22%  Similarity=0.326  Sum_probs=176.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCcc--cccccccccccc--cccEEE-Eeeee
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYL--VNGRIV-ASPAI   85 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~-~~~~~   85 (275)
                      +||+|||||++|+++|..|+ .  |.+|+|||+++..++....+........  .........+++  .++++. ...+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            48999999999999999997 3  8999999999877654332221111111  111111111111  156663 34444


Q ss_pred             Eee--cCeEEecC---Ce--EEeCCEEEEccCCCCCCCchH------------HHH---HH-HHh--c--------CCcc
Q 023957           86 NIT--ENEVLTAE---GR--RVVYDYLVIATGHKDPVPKTR------------TER---LN-QYQ--A--------GGPT  132 (275)
Q Consensus        86 ~~~--~~~v~~~~---~~--~~~~~~lilatG~~~~~~~~~------------~~~---l~-~~~--~--------~g~~  132 (275)
                      .++  .+.+.+.+   +.  ++.||++++|||+.|..|.++            .+.   +. .+.  .        +|.+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~  160 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI  160 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence            554  34555532   54  489999999999886554321            111   21 111  1        8889


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecE
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  211 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  211 (275)
                      |+++|..+.  ..+.+++++++.+.+++ .+++++.+.+.+.+++.|+++++++.|++++.+++...+.+ +++++++|.
T Consensus       161 g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~  237 (447)
T 1nhp_A          161 GIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADL  237 (447)
T ss_dssp             HHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSE
T ss_pred             HHHHHHHHH--HCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCE
Confidence            999999998  46889999999988877 57888999999999999999999999999986533324555 567899999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ||+|+|.+|+.++++.. +  +++.+|++.||++++| +.|+|||+|||+..+.
T Consensus       238 vi~a~G~~p~~~~~~~~-~--~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~  287 (447)
T 1nhp_A          238 VVVAVGVRPNTAWLKGT-L--ELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKY  287 (447)
T ss_dssp             EEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEE
T ss_pred             EEECcCCCCChHHHHhh-h--hhcCCCcEEECccccC-CCCCEEEeeeEEEeec
Confidence            99999999998887654 3  6677899999999999 8999999999997653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.98  E-value=1.8e-31  Score=218.63  Aligned_cols=244  Identities=18%  Similarity=0.200  Sum_probs=160.8

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc-cccc--ccC--Ccccc-----cccccccccc--cc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRA--MVE--PSFGK-----RSVINHTDYL--VN   76 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~-~~~~--~~~--~~~~~-----~~~~~~~~~~--~~   76 (275)
                      |+..|||+||||||||++||.+|+ .|++|+|||++...+.... .++.  .+.  +.+..     +......+..  .+
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~   80 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYG   80 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcC
Confidence            345699999999999999999998 6999999999875442221 1110  000  00000     0000000000  12


Q ss_pred             cEEEEeeeeEeec----CeEEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------HHHh---c--------C
Q 023957           77 GRIVASPAINITE----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------NQYQ---A--------G  129 (275)
Q Consensus        77 ~~~~~~~~~~~~~----~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~~~~---~--------~  129 (275)
                      ..+....+.....    ..+.+.++..+.|+++++|||+.|..|.++....            ....   .        +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGg  160 (314)
T 4a5l_A           81 TTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGG  160 (314)
T ss_dssp             CEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECS
T ss_pred             cEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECC
Confidence            3333333333322    1566778889999999999999866554331111            1100   0        8


Q ss_pred             CcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc---eEE---cCC
Q 023957          130 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD---TYL---TST  203 (275)
Q Consensus       130 g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~---~v~---~~~  203 (275)
                      |.+|+|+|..+.  ..+.+|+++++......     ......+.....+++.+....+.++...+...   .+.   ..+
T Consensus       161 G~ig~e~A~~l~--~~G~~Vt~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  233 (314)
T 4a5l_A          161 GDAAMEEALHLT--KYGSKVIILHRRDAFRA-----SKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGE  233 (314)
T ss_dssp             SHHHHHHHHHHT--TTSSEEEEECSSSSCCS-----CHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCC
T ss_pred             ChHHHHHHHHHH--HhCCeeeeecccccccc-----cchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeeccccc
Confidence            999999999998  67999999998765422     12233444556688888888888876554322   222   245


Q ss_pred             CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          204 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       204 g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++++++|.|++++|.+|+.+++...   +.++++|++ ||+++|| |.|+|||+|||++.|.
T Consensus       234 ~~~i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~~~  290 (314)
T 4a5l_A          234 YKVVPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPKT-SVDGVFACGDVCDRVY  290 (314)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTBC-SSTTEEECSTTTCSSC
T ss_pred             ceeeccccceEecccccChhHhccc---ceEcCCeeE-eCCCCcc-CCCCEEEEEeccCCcc
Confidence            5689999999999999999888643   356777866 8889998 9999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.98  E-value=4e-32  Score=233.26  Aligned_cols=246  Identities=17%  Similarity=0.209  Sum_probs=179.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc---------------ccC---Ccc-------c
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA---------------MVE---PSF-------G   63 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~---------------~~~---~~~-------~   63 (275)
                      ++||+|||||++|++||..|+ .|++|+|||+ +.+|+.|...   +.               ...   ...       .
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccC
Confidence            489999999999999999998 6999999999 4555332210   00               000   000       0


Q ss_pred             ccccccc------------cccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCc-hH-------HH
Q 023957           64 KRSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TR-------TE  121 (275)
Q Consensus        64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~-~~-------~~  121 (275)
                      ...+..+            ..++  .+++++.+....++.+++.+.+ ..+.||++|+|||+.|..|+ ++       ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~~v~~~~  162 (458)
T 1lvl_A           84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGGPVISST  162 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBTTEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccCcEecHH
Confidence            0000000            0111  2567777776666777777765 78999999999999876553 21       11


Q ss_pred             HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      ....+.   +      +|.+|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++++++|++++.
T Consensus       163 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  240 (458)
T 1lvl_A          163 EALAPKALPQHLVVVGGGYIGLELGIAYR--KLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN  240 (458)
T ss_dssp             HHTCCSSCCSEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET
T ss_pred             HHhhhhccCCeEEEECcCHHHHHHHHHHH--HCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe
Confidence            111111   1      8899999999998  4588999999999988888888999999999999999999999999986


Q ss_pred             CCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          193 SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       193 ~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                       ++ +.+...+|  +++++|.||+|+|.+|+.+++.....+++++++ ++.||++++| +.|+|||+|||+..+..
T Consensus       241 -~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~~~~  312 (458)
T 1lvl_A          241 -GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQT-SMHNVWAIGDVAGEPML  312 (458)
T ss_dssp             -TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBC-SSTTEEECGGGGCSSCC
T ss_pred             -CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcC-CCCCEEEeeccCCCccc
Confidence             43 55554456  689999999999999998764222333456666 9999999998 89999999999986643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.97  E-value=1.2e-31  Score=220.35  Aligned_cols=240  Identities=17%  Similarity=0.173  Sum_probs=168.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccccc---ccc-ccccccc--cccEEEEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFGK---RSV-INHTDYL--VNGRIVASP   83 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~--~~~~~~~~~   83 (275)
                      +++||+|||||++|+++|++|+ .|++|+|||++  .|..|........ +.+..   ..+ ....++.  .++++....
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   91 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDI   91 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESC
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            3589999999999999999998 69999999998  4443332111000 10100   000 0111111  145555566


Q ss_pred             eeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHH------------HHHH--HHhc-------CCcchhhHHH
Q 023957           84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------ERLN--QYQA-------GGPTGVELAG  138 (275)
Q Consensus        84 ~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~------------~~l~--~~~~-------~g~~~~~~a~  138 (275)
                      +..++..    .+.+.++..+.||++|+|||+.|..|.++.            ....  .+..       +|.+++++|.
T Consensus        92 v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~  171 (323)
T 3f8d_A           92 VEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAE  171 (323)
T ss_dssp             EEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHH
T ss_pred             EEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHH
Confidence            6666543    577777789999999999999865543221            0111  0111       7889999999


Q ss_pred             HHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHH-hCCCEEEcCceeeeecCCCCCceEEcCC---Cc--EEeecEE
Q 023957          139 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCH  212 (275)
Q Consensus       139 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~v  212 (275)
                      .+..  .+.+++++.+.+.+..  .    ..+.+.+. +.||+++.++.+.+++.+++...+.+.+   |+  ++++|.|
T Consensus       172 ~l~~--~g~~v~~~~~~~~~~~--~----~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~v  243 (323)
T 3f8d_A          172 ILSS--YSTKVYLIHRRDTFKA--Q----PIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGV  243 (323)
T ss_dssp             HHHH--HSSEEEEECSSSSCCS--C----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             HHHH--hCCeEEEEEeCCCCCc--C----HHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEE
Confidence            9984  4889999999887654  1    22333344 4599999999999998765444566554   76  7999999


Q ss_pred             EEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          213 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       213 v~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      |+++|+.|+.++++..++  +++++|++.||++++| +.|+||++|||+..+
T Consensus       244 v~a~G~~p~~~~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  292 (323)
T 3f8d_A          244 FIEIGFDPPTDFAKSNGI--ETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAW  292 (323)
T ss_dssp             EECCCEECCHHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBSTT
T ss_pred             EEEECCCCChhHHhhcCe--eecCCCcEecCCCcee-cCCCEEEcceecCCC
Confidence            999999999888877665  6788999999999998 899999999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.97  E-value=1.5e-31  Score=220.29  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=166.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Cccc----ccccc-cccccc--cccEEEEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFG----KRSVI-NHTDYL--VNGRIVAS   82 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~~----~~~~~-~~~~~~--~~~~~~~~   82 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||++ .+|..+........ +.+.    ...+. ...+..  .++++...
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~   85 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMD   85 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence            3589999999999999999998 69999999998 45544332111000 0010    00000 011111  14566666


Q ss_pred             eeeEeecC-------eEEecCCeEEeCCEEEEccCCCCCCCchHH------------HHHHHHh---------cCCcchh
Q 023957           83 PAINITEN-------EVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------ERLNQYQ---------AGGPTGV  134 (275)
Q Consensus        83 ~~~~~~~~-------~v~~~~~~~~~~~~lilatG~~~~~~~~~~------------~~l~~~~---------~~g~~~~  134 (275)
                      .+..++..       .+.+.++..+.||++|+|||+.|..|.++.            .......         .+|.+++
T Consensus        86 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~  165 (325)
T 2q7v_A           86 EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAV  165 (325)
T ss_dssp             CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHH
T ss_pred             eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHH
Confidence            66655422       456667788999999999998755443211            1111111         1788999


Q ss_pred             hHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHH-hCCCEEEcCceeeeecCCCCCceEEcC---CCc--EEe
Q 023957          135 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TIN  208 (275)
Q Consensus       135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~  208 (275)
                      |+|..+.  ..+.+++++.+.+.+..      ...+.+.+. +.||+++++++++++..+++...+.+.   +|+  +++
T Consensus       166 e~A~~l~--~~g~~Vtlv~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~  237 (325)
T 2q7v_A          166 EEGMFLT--KFADEVTVIHRRDTLRA------NKVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELA  237 (325)
T ss_dssp             HHHHHHT--TTCSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHH--hcCCEEEEEeCCCcCCc------chHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEE
Confidence            9999998  56899999998876532      233344444 469999999999999865433345553   665  789


Q ss_pred             ecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      +|.||+|+|++|+.+++...   ++++++|++.||++++| +.|+|||+|||+..+
T Consensus       238 ~D~vi~a~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  289 (325)
T 2q7v_A          238 TDGVFIFIGHVPNTAFVKDT---VSLRDDGYVDVRDEIYT-NIPMLFAAGDVSDYI  289 (325)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCBTTTBC-SSTTEEECSTTTCSS
T ss_pred             cCEEEEccCCCCChHHHhhh---cccCCCccEecCCCCcc-CCCCEEEeecccCcc
Confidence            99999999999998888754   36678899999999998 899999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.97  E-value=1.1e-31  Score=222.02  Aligned_cols=248  Identities=17%  Similarity=0.177  Sum_probs=172.3

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc-cc--c-CCccc----ccccccccccc--cccE
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-AM--V-EPSFG----KRSVINHTDYL--VNGR   78 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~-~~--~-~~~~~----~~~~~~~~~~~--~~~~   78 (275)
                      |..++||+|||||++|+++|+.|+ +|++|+|||+++.+++.|.... ..  . .+.+.    ........+..  .++.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPV   81 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCE
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            344689999999999999999998 6999999999988876553211 00  0 00000    00000001111  1334


Q ss_pred             EE-EeeeeEeecC----eEEecCCeEEeCCEEEEccCCC---CCCCchHHH-------------HHHHHhc-------CC
Q 023957           79 IV-ASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTE-------------RLNQYQA-------GG  130 (275)
Q Consensus        79 ~~-~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~---~~~~~~~~~-------------~l~~~~~-------~g  130 (275)
                      +. ...+..++..    .+.+.++..+.||++|+|||..   |..|.++..             ..+.+..       +|
T Consensus        82 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G  161 (335)
T 2zbw_A           82 YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGG  161 (335)
T ss_dssp             EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSS
T ss_pred             EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCC
Confidence            43 3344444321    4666677789999999999983   443332100             0111111       78


Q ss_pred             cchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC---CC--c
Q 023957          131 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TG--D  205 (275)
Q Consensus       131 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~  205 (275)
                      .+++|+|..+.  ..+.+++++.+.+.+..  .+...+.+.+.+++.|++++.++.|.+++.+++...+.+.   +|  +
T Consensus       162 ~~g~e~a~~l~--~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  237 (335)
T 2zbw_A          162 DSAVDWALNLL--DTARRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEEL  237 (335)
T ss_dssp             HHHHHHHHHTT--TTSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHHH--hhCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceE
Confidence            89999999998  56889999999887643  2456777888888899999999999999875433345554   66  5


Q ss_pred             EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          206 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       206 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++++|.||+|+|++|+.+++...++  +++ +|++.||++++| +.|+|||+|||+..+.
T Consensus       238 ~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~  293 (335)
T 2zbw_A          238 ALEVDAVLILAGYITKLGPLANWGL--ALE-KNKIKVDTTMAT-SIPGVYACGDIVTYPG  293 (335)
T ss_dssp             EEECSEEEECCCEEEECGGGGGSCC--CEE-TTEEECCTTCBC-SSTTEEECSTTEECTT
T ss_pred             EEecCEEEEeecCCCCchHhhhcce--ecc-CCeeeeCCCCCC-CCCCEEEeccccccCc
Confidence            7999999999999998888877655  444 689999999998 8999999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.97  E-value=3.4e-31  Score=219.12  Aligned_cols=241  Identities=15%  Similarity=0.143  Sum_probs=166.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC----CccccccccccccC-Ccccc-----cccccccccc--ccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE----YFEITWASLRAMVE-PSFGK-----RSVINHTDYL--VNG   77 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~----~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~--~~~   77 (275)
                      .+++||+|||||++||++|+.|+ .|++|+|||+++    ..|+.|........ +.+..     ........+.  .++
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   99 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGT   99 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999998 699999999955    44443332111100 01110     0000111111  156


Q ss_pred             EEEEeeeeEeecC----eEEe---cCCeEEeCCEEEEccCCCCCCCchHHHH------------HHHH----hc------
Q 023957           78 RIVASPAINITEN----EVLT---AEGRRVVYDYLVIATGHKDPVPKTRTER------------LNQY----QA------  128 (275)
Q Consensus        78 ~~~~~~~~~~~~~----~v~~---~~~~~~~~~~lilatG~~~~~~~~~~~~------------l~~~----~~------  128 (275)
                      ++....+..++..    .+.+   .++..+.||++|+|+|+.|..|.++...            ....    ..      
T Consensus       100 ~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  179 (338)
T 3itj_A          100 EIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI  179 (338)
T ss_dssp             EEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEE
Confidence            6666666666543    3333   3567889999999999886554432111            1111    11      


Q ss_pred             -CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCce-EEcCC--
Q 023957          129 -GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDT-YLTST--  203 (275)
Q Consensus       129 -~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~-v~~~~--  203 (275)
                       +|.+++++|..+.  ..+.+++++.+.+.+..      .+.+.+.+.+. ||+++.++.|.+++.+++... +.+.+  
T Consensus       180 G~G~~g~e~a~~l~--~~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~  251 (338)
T 3itj_A          180 GGGDSACEEAQFLT--KYGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTK  251 (338)
T ss_dssp             CSSHHHHHHHHHHT--TTSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETT
T ss_pred             CCCHHHHHHHHHHH--hcCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECC
Confidence             7889999999998  56899999999887543      34455556555 999999999999987665433 55544  


Q ss_pred             ---CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEe-CCCccccCCCCeEEeccccCC
Q 023957          204 ---GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       204 ---g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v-~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                         ++++++|.||+|+|+.|+..++.. +  ++++++|++.+ |..+++ +.|+|||+|||+..
T Consensus       252 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~--l~~~~~G~i~v~~~~~~t-~~~~vya~GD~~~~  311 (338)
T 3itj_A          252 KNEETDLPVSGLFYAIGHTPATKIVAG-Q--VDTDEAGYIKTVPGSSLT-SVPGFFAAGDVQDS  311 (338)
T ss_dssp             TTEEEEEECSEEEECSCEEECCGGGBT-T--BCBCTTSCBCCCTTSSBC-SSTTEEECGGGGCS
T ss_pred             CCceEEEEeCEEEEEeCCCCChhHhhC-c--eEecCCCcEEEcCccccc-CCCCEEEeeccCCC
Confidence               457999999999999999888765 4  47788999995 778888 89999999999974

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.97  E-value=2.6e-31  Score=217.64  Aligned_cols=245  Identities=17%  Similarity=0.131  Sum_probs=157.4

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--ccccccccCCccc--ccccccccccc--cccEEEE
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASLRAMVEPSFG--KRSVINHTDYL--VNGRIVA   81 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~   81 (275)
                      |+++.|||+||||||||++||.+|+ .|++|+|||++...|..  +............  .+.........  ....+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY   81 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence            5556799999999999999999998 69999999997643321  1111111000000  00000000000  0112222


Q ss_pred             eeee-Ee--ecCeEEecCCeEEeCCEEEEccCCCCCCCchHHH------------HHHHH--h-c------CCcchhhHH
Q 023957           82 SPAI-NI--TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------------RLNQY--Q-A------GGPTGVELA  137 (275)
Q Consensus        82 ~~~~-~~--~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~------------~l~~~--~-~------~g~~~~~~a  137 (275)
                      .... ..  ........++.++.||++++|||+.|..|+++..            .....  . +      +|++|+|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A  161 (312)
T 4gcm_A           82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEG  161 (312)
T ss_dssp             CCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred             eeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHH
Confidence            1111 11  1225556677899999999999998655443210            11111  1 1      889999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce----EEc--CCCcEEeecE
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT----YLT--STGDTINADC  211 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~----v~~--~~g~~~~~d~  211 (275)
                      ..+.  ..+.+|+++++.+.+.+.     .......++..++.......+..+...+....    ...  .++..+++|.
T Consensus       162 ~~l~--~~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  234 (312)
T 4gcm_A          162 TFLT--KFADKVTIVHRRDELRAQ-----RILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADG  234 (312)
T ss_dssp             HHHT--TTCSEEEEECSSSSCCSC-----HHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred             HHHH--hcCCEEEEEecccccCcc-----hhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeee
Confidence            9998  679999999998876542     12233456667888887777666654433221    122  2345799999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      |++++|..|+..++...++   .+++|+|.||+++|| |.|+|||+|||+..+
T Consensus       235 v~~~~g~~~~~~~~~~~g~---~~~~G~I~vd~~~~T-s~pgIyA~GDv~~~~  283 (312)
T 4gcm_A          235 VFIYIGMKPLTAPFKDLGI---TNDVGYIVTKDDMTT-SVPGIFAAGDVRDKG  283 (312)
T ss_dssp             EEECSCEEESCGGGGGGTC---BCTTSCBCCCTTSBC-SSTTEEECSTTBSCS
T ss_pred             EEeecCCCcCchhHHhcce---ecCCCeEeeCCCCcc-CCCCEEEEeecCCCc
Confidence            9999999999888877664   456899999999999 999999999999744

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.97  E-value=1.9e-30  Score=220.05  Aligned_cols=246  Identities=18%  Similarity=0.216  Sum_probs=174.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      +||+|||||++|+++|..|+    +|++|+|||+++.+++...............+......+.+  .+++++..++..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            68999999999999999986    48999999999976654322111111111111112222222  2677777788777


Q ss_pred             ecC--eEEecCCe----EEeCCEEEEccCCCCCCC---chHH-----------HHHHH----Hhc------CC-------
Q 023957           88 TEN--EVLTAEGR----RVVYDYLVIATGHKDPVP---KTRT-----------ERLNQ----YQA------GG-------  130 (275)
Q Consensus        88 ~~~--~v~~~~~~----~~~~~~lilatG~~~~~~---~~~~-----------~~l~~----~~~------~g-------  130 (275)
                      +..  .+.+.++.    ++.||+||+|||..|..|   +...           ..+..    +..      +|       
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            654  67766654    389999999999986644   3221           11111    111      33       


Q ss_pred             ------------c------chhhHHHHHhhh--CCC----CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957          131 ------------P------TGVELAGEIAVD--FPE----KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  186 (275)
Q Consensus       131 ------------~------~~~~~a~~l~~~--~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  186 (275)
                                  .      .++|.|..+...  ..+    .+++++++.+ .++.+++.+.+.+.+.+++.||+++.++.
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~  240 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFK  240 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCc
Confidence                        1      256777544321  334    4899999988 66677788899999999999999999999


Q ss_pred             eeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957          187 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       187 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      |++++.++    +++++|+++++|.||+++|+.|+ .++...+.++ .+++|++.||+.++++++|+||++|||+..+.+
T Consensus       241 v~~i~~~~----v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~  314 (409)
T 3h8l_A          241 IKEIREHE----IVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP  314 (409)
T ss_dssp             EEEECSSE----EEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS
T ss_pred             eEEECCCe----EEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCC
Confidence            99997542    77889999999999999999986 5666663333 467899999999999889999999999986443

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.97  E-value=6.2e-31  Score=215.47  Aligned_cols=242  Identities=16%  Similarity=0.148  Sum_probs=165.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEE-EcCCCCccccccccccccC-Cccc-----ccccccccccc--cccEEEE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTL-IDPKEYFEITWASLRAMVE-PSFG-----KRSVINHTDYL--VNGRIVA   81 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~v-ie~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~--~~~~~~~   81 (275)
                      .++||+|||||++||++|+.|+ .|++|+| +|| +.+|+.+........ +.+.     .........+.  .++++..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM   81 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence            4689999999999999999998 6999999 999 445544332211100 0110     01111111111  1456665


Q ss_pred             eeeeEe-ec--C--eE-EecCCeEEeCCEEEEccCCCCCCCchHH------------HHHHHHhc---------CCcchh
Q 023957           82 SPAINI-TE--N--EV-LTAEGRRVVYDYLVIATGHKDPVPKTRT------------ERLNQYQA---------GGPTGV  134 (275)
Q Consensus        82 ~~~~~~-~~--~--~v-~~~~~~~~~~~~lilatG~~~~~~~~~~------------~~l~~~~~---------~g~~~~  134 (275)
                      .++..+ +.  .  .+ ...++ .+.||++|+|||+.|..|.++.            ........         +|.+++
T Consensus        82 ~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~  160 (315)
T 3r9u_A           82 VGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTAL  160 (315)
T ss_dssp             CCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHH
T ss_pred             EEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHH
Confidence            566665 33  2  21 22233 8899999999998765543211            11111111         788999


Q ss_pred             hHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc--CCCc--EEee
Q 023957          135 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STGD--TINA  209 (275)
Q Consensus       135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g~--~~~~  209 (275)
                      ++|..+.  ..+.+++++.+.+.+..     ..+.+.+.+++.|+++++++.+.++..+++.. .+++  .+|+  ++++
T Consensus       161 e~a~~l~--~~g~~v~~~~~~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~  233 (315)
T 3r9u_A          161 EEALYLA--NICSKIYLIHRRDEFRA-----APSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNV  233 (315)
T ss_dssp             HHHHHHH--TTSSEEEEECSSSSCBS-----CHHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECC
T ss_pred             HHHHHHH--hhCCEEEEEEeCCCCCC-----CHHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeec
Confidence            9999998  56899999999887521     22334455578899999999999998765332 2443  4775  7999


Q ss_pred             cEEEEcCCCCCCchhhcc-cccc-cccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          210 DCHFLCTGKPVGSDWLKD-TILK-DSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       210 d~vv~a~G~~~~~~~~~~-~~~~-~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      |.||+|+|+.|+..++.. ..++ ++++++|++.||++++| +.|+|||+|||+..
T Consensus       234 D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~~~~  288 (315)
T 3r9u_A          234 PGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDLRKD  288 (315)
T ss_dssp             SCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGGBTT
T ss_pred             CeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecccCC
Confidence            999999999999888776 2233 57788899999999999 89999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.97  E-value=1.1e-30  Score=214.46  Aligned_cols=242  Identities=16%  Similarity=0.176  Sum_probs=169.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc-CCccc----ccccc-cccccc--cccEEEEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFG----KRSVI-NHTDYL--VNGRIVASP   83 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~-~~~~~----~~~~~-~~~~~~--~~~~~~~~~   83 (275)
                      ++||+|||||++|+++|+.|+ .|++|+|||+.. .+..+....... .+.+.    ...+. ....+.  .++++....
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            489999999999999999998 699999999763 333222111000 00110    00000 001111  145666666


Q ss_pred             eeEeecC--eEE-ecCCeEEeCCEEEEccCCCCCCCchHHHHH------------HHHhc---------CCcchhhHHHH
Q 023957           84 AINITEN--EVL-TAEGRRVVYDYLVIATGHKDPVPKTRTERL------------NQYQA---------GGPTGVELAGE  139 (275)
Q Consensus        84 ~~~~~~~--~v~-~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~~~~~---------~g~~~~~~a~~  139 (275)
                      +..++..  .+. +.++..+.||++++|||+.|..|.++....            .....         +|.+++|+|..
T Consensus        84 v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~  163 (320)
T 1trb_A           84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALY  163 (320)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHH
Confidence            6666532  222 556778999999999999877665532211            11000         78899999999


Q ss_pred             HhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC----C--cEEeecEE
Q 023957          140 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST----G--DTINADCH  212 (275)
Q Consensus       140 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~----g--~~~~~d~v  212 (275)
                      +.  ..+.+++++.+.+.+.  ..+.+.+.+.+.+++.||+++++++|++++.+++.+ .+.+.+    |  +++++|.|
T Consensus       164 l~--~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~v  239 (320)
T 1trb_A          164 LS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL  239 (320)
T ss_dssp             HT--TTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEE
T ss_pred             HH--hcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEE
Confidence            98  5689999999887653  245567778888888999999999999998665443 255443    4  57999999


Q ss_pred             EEcCCCCCCchhhcccccccccCCCCceEeCCCc-----cccCCCCeEEeccccCCC
Q 023957          213 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-----RVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       213 v~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~-----~~~~~~~v~a~Gd~~~~~  264 (275)
                      |+|+|++|+.+++. .++  +++ +|++.||+++     +| +.|+||++|||+..+
T Consensus       240 v~a~G~~p~~~~~~-~~l--~~~-~G~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~  291 (320)
T 1trb_A          240 FVAIGHSPNTAIFE-GQL--ELE-NGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI  291 (320)
T ss_dssp             EECSCEEESCGGGT-TTS--CEE-TTEECCCCSSSSCTTBC-SSTTEEECGGGGCSS
T ss_pred             EEEeCCCCChHHhc-ccc--ccc-CceEEECCCcccccccC-CCCCEEEcccccCCc
Confidence            99999999988876 333  566 8999999996     66 899999999999875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.97  E-value=1.8e-30  Score=212.52  Aligned_cols=241  Identities=19%  Similarity=0.189  Sum_probs=165.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCcccccccccccc-CCcc----cccccc-cccccc--cccEEEEe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAMV-EPSF----GKRSVI-NHTDYL--VNGRIVAS   82 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~--~~~~~~~~   82 (275)
                      ++||+|||||++|+++|+.|+ .|+ +|+|||++. .|..+....... .+.+    ....+. ...+..  .++++...
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   79 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT   79 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999998 699 999999964 333222111000 0000    000000 011111  14556555


Q ss_pred             eeeEee--cC--eEEecCCeEEeCCEEEEccCCCCCCCchHHH------------HHHHHhc---------CCcchhhHH
Q 023957           83 PAINIT--EN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------------RLNQYQA---------GGPTGVELA  137 (275)
Q Consensus        83 ~~~~~~--~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~~~------------~l~~~~~---------~g~~~~~~a  137 (275)
                      ++..++  ..  .+.+.++..+.||++|+|||+.|..|.++..            .......         +|.+++|+|
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A  159 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEA  159 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHH
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHH
Confidence            555554  23  5666777789999999999988665543211            1111110         788999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHH-hCCCEEEcCceeeeecCCCCCc-eEEcC---CCc--EEeec
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TINAD  210 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~~d  210 (275)
                      ..+.  ..+.+++++.+.+.+.  .    ...+.+.+. +.||++++++.++++..+++.+ .+.+.   +|+  ++++|
T Consensus       160 ~~l~--~~g~~Vtlv~~~~~~~--~----~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D  231 (311)
T 2q0l_A          160 IYLA--NICKKVYLIHRRDGFR--C----APITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVP  231 (311)
T ss_dssp             HHHH--TTSSEEEEECSSSSCC--S----CHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHH--hcCCEEEEEeeCCccC--C----CHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecC
Confidence            9998  5689999999887652  2    233444554 4799999999999998654432 35544   665  78999


Q ss_pred             EEEEcCCCCCCchhhcccc--cccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          211 CHFLCTGKPVGSDWLKDTI--LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~--~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      .||+|+|++|+.+++...+  .+++++++|++.||++++| +.|+|||+|||+..
T Consensus       232 ~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~  285 (311)
T 2q0l_A          232 GFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGDIRIF  285 (311)
T ss_dssp             EEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECSTTBTT
T ss_pred             EEEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEcccccCc
Confidence            9999999999988887654  1246778899999999998 89999999999986

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.97  E-value=1.7e-30  Score=213.45  Aligned_cols=241  Identities=19%  Similarity=0.211  Sum_probs=165.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccc---cccccc-cccccc--cccEEEEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSF---GKRSVI-NHTDYL--VNGRIVAS   82 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~--~~~~~~~~   82 (275)
                      .+++||+|||||++|+++|+.|+ .|++|+|||+.. .|..+........ +.+   ....+. ...+..  .++++...
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   92 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV   92 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence            34589999999999999999998 699999999954 4433221110000 000   000000 011111  14555555


Q ss_pred             eeeEee--cC--eEEecCCeEEeCCEEEEccCCCCCCCchHH------------HHHHHHhc---------CCcchhhHH
Q 023957           83 PAINIT--EN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------ERLNQYQA---------GGPTGVELA  137 (275)
Q Consensus        83 ~~~~~~--~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~~------------~~l~~~~~---------~g~~~~~~a  137 (275)
                      ++..++  .+  .+.+ ++..+.||++|+|+|+.|..|.++.            ........         +|.+++|.|
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a  171 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAA  171 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHH
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHH
Confidence            555554  22  4555 5567899999999998755543211            01111110         788999999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcC---CCc--EEeecE
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS---TGD--TINADC  211 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~~~~d~  211 (275)
                      ..+.  ..+.+++++.+.+.+..      ...+.+.+++.|++++.+++++++..+++. ..+.+.   +|+  ++++|.
T Consensus       172 ~~l~--~~g~~V~~i~~~~~~~~------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~  243 (319)
T 3cty_A          172 ISMS--EYVKNVTIIEYMPKYMC------ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDG  243 (319)
T ss_dssp             HHHT--TTBSEEEEECSSSSCCS------CHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSE
T ss_pred             HHHH--hhCCcEEEEEcCCccCC------CHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCE
Confidence            9998  56899999998876521      234566677899999999999999866542 234443   565  699999


Q ss_pred             EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957          212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      ||+|+|+.|+.+++...++  +++++|++.||++++| +.|+|||+|||+..+
T Consensus       244 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  293 (319)
T 3cty_A          244 VFIYVGLIPQTSFLKDSGV--KLDERGYIVVDSRQRT-SVPGVYAAGDVTSGN  293 (319)
T ss_dssp             EEECCCEEECCGGGTTSCC--CBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC
T ss_pred             EEEeeCCccChHHHhhccc--cccCCccEeCCCCCcc-CCCCEEEeecccCcc
Confidence            9999999999888876654  6778899999999998 899999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.97  E-value=5.6e-30  Score=218.82  Aligned_cols=248  Identities=20%  Similarity=0.184  Sum_probs=169.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (275)
                      ++||+|||||++|+++|+.|+    +|++|+|||+++.+.+......................+++  .+++++...+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            579999999999999999996    48999999999976544321111111111111122222222  367788888888


Q ss_pred             eecC--eEEecCCeEEeCCEEEEccCCCCCCC---chH-----------HHH-------HHHHh-c-------CC----c
Q 023957           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR-----------TER-------LNQYQ-A-------GG----P  131 (275)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~lilatG~~~~~~---~~~-----------~~~-------l~~~~-~-------~g----~  131 (275)
                      ++..  .+.+++++.+.||++|+|||+.|..|   +..           .+.       ++.+. .       +|    .
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~  163 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASC  163 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCC
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCc
Confidence            8754  78888888899999999999985432   211           111       11221 1       32    2


Q ss_pred             ch--hhHHHHHhhh--CCCC----E-EEEEeCCCcccCc---CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957          132 TG--VELAGEIAVD--FPEK----K-VTLVHKGSRLLEF---IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  199 (275)
Q Consensus       132 ~~--~~~a~~l~~~--~~~~----~-v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  199 (275)
                      .|  +|+|..+...  ..+.    + ++++++.+.+...   ..+...+.+.+.+++.||++++++.|++++.+  .+.+
T Consensus       164 ~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~--~v~~  241 (437)
T 3sx6_A          164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDN--KMYV  241 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETT--EEEE
T ss_pred             CcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECC--eEEE
Confidence            33  7777444321  2233    3 9999998876321   11347788889999999999999999999753  3333


Q ss_pred             E--cCC-----CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          200 L--TST-----GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       200 ~--~~~-----g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .  ..+     ++++++|.+++++|+.++..+....++   .+++|++.||+++|++++|+|||+|||+..+.
T Consensus       242 ~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl---~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~  311 (437)
T 3sx6_A          242 TQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL---CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPP  311 (437)
T ss_dssp             EEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT---BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCC
T ss_pred             EecccCCccccceEEEEeEEEEcCCCcCchhhhccccc---cCCCCcEEeChhccCCCCCCEEEEEEEeccCC
Confidence            2  233     567999999999999886555443443   57789999999999988999999999998775

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.97  E-value=1.1e-30  Score=215.43  Aligned_cols=240  Identities=17%  Similarity=0.211  Sum_probs=168.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc-cccc---CCccc----ccccccccccc--cccEEE-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL-RAMV---EPSFG----KRSVINHTDYL--VNGRIV-   80 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~-~~~~---~~~~~----~~~~~~~~~~~--~~~~~~-   80 (275)
                      ++||+|||||++|+++|+.|+ +|++|+|||+++.+|+.|... +...   .+.+.    ........++.  .++++. 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            479999999999999999998 699999999999888665321 1000   00010    00000111111  134554 


Q ss_pred             EeeeeEeec--C---eEEecCCeEEeCCEEEEccCC---CCCCCchHHHH-------------HHHHhc-------CCcc
Q 023957           81 ASPAINITE--N---EVLTAEGRRVVYDYLVIATGH---KDPVPKTRTER-------------LNQYQA-------GGPT  132 (275)
Q Consensus        81 ~~~~~~~~~--~---~v~~~~~~~~~~~~lilatG~---~~~~~~~~~~~-------------l~~~~~-------~g~~  132 (275)
                      ..++..++.  +   .+.+.++. +.||++|+|||.   .|..|.++...             ...+..       +|.+
T Consensus        87 ~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~v~vvG~g~~  165 (332)
T 3lzw_A           87 EQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDS  165 (332)
T ss_dssp             SCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEESSCSCGGGGBTCEEEEECSSHH
T ss_pred             cCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEEecCCHHHcCCCEEEEECCCHh
Confidence            355555543  2   56666664 899999999999   65544322110             011111       7888


Q ss_pred             hhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC-----CcEE
Q 023957          133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-----GDTI  207 (275)
Q Consensus       133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-----g~~~  207 (275)
                      ++++|..+.  ..+.+++++.+.+.+..      .+...+.+++.||+++.++.+.+++.+++...+.+.+     ++++
T Consensus       166 ~~e~a~~l~--~~~~~v~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~  237 (332)
T 3lzw_A          166 AVDWALMLE--PIAKEVSIIHRRDKFRA------HEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEIL  237 (332)
T ss_dssp             HHHHHHHHT--TTBSEEEEECSSSSCSS------CHHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEE
T ss_pred             HHHHHHHHH--hhCCeEEEEEecCcCCc------cHHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEE
Confidence            999999998  56889999999887532      1223445788999999999999998776655566554     4579


Q ss_pred             eecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          208 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       208 ~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++|.||+|+|+.|+.+++...++  ++ ++|++.||++++| +.|+|||+|||+..+.
T Consensus       238 ~~D~vv~a~G~~p~~~~~~~~~~--~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~  291 (332)
T 3lzw_A          238 EIDDLIVNYGFVSSLGPIKNWGL--DI-EKNSIVVKSTMET-NIEGFFAAGDICTYEG  291 (332)
T ss_dssp             ECSEEEECCCEECCCGGGGGSSC--CE-ETTEEECCTTSBC-SSTTEEECGGGEECTT
T ss_pred             ECCEEEEeeccCCCchHHhhcCc--cc-cCCeEEeCCCCce-ecCCEEEccceecCCC
Confidence            99999999999999888877766  44 5799999999998 8999999999996543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.97  E-value=3.4e-30  Score=215.06  Aligned_cols=246  Identities=21%  Similarity=0.219  Sum_probs=171.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc----ccCCccc----ccccccccccc--cccEEE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----MVEPSFG----KRSVINHTDYL--VNGRIV   80 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~--~~~~~~   80 (275)
                      .++||+|||||++|+++|+.|+ +|++|+|||+++.+++.|.....    ...+.+.    ........+..  .++.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   92 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVV   92 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence            4589999999999999999998 69999999999887765532110    0000000    00000000111  134443


Q ss_pred             E-eeeeEeec--C---eEEecCCeEEeCCEEEEccCC---CCCCCchHH--HHH------------HHHhc-------CC
Q 023957           81 A-SPAINITE--N---EVLTAEGRRVVYDYLVIATGH---KDPVPKTRT--ERL------------NQYQA-------GG  130 (275)
Q Consensus        81 ~-~~~~~~~~--~---~v~~~~~~~~~~~~lilatG~---~~~~~~~~~--~~l------------~~~~~-------~g  130 (275)
                      . ..+..++.  .   .+.+.++..+.||++|+|+|+   .|..+.++.  +.+            +.+..       +|
T Consensus        93 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~G  172 (360)
T 3ab1_A           93 LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGG  172 (360)
T ss_dssp             CSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECSS
T ss_pred             cCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECCC
Confidence            2 34444442  1   567777778999999999998   444433321  111            01111       78


Q ss_pred             cchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc--CCC--c
Q 023957          131 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STG--D  205 (275)
Q Consensus       131 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~  205 (275)
                      .+++++|..+.  ..+.+++++.+.+.+...  +...+.+.+.+++.|++++.+++|.+++.+++.+ .+.+  .+|  +
T Consensus       173 ~~g~e~A~~l~--~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~  248 (360)
T 3ab1_A          173 DSALDWTVGLI--KNAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKW  248 (360)
T ss_dssp             HHHHHHHHHTT--TTSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEE
T ss_pred             HHHHHHHHHHH--hcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeE
Confidence            88999999998  568999999998776432  3466677788888999999999999998764432 3444  377  5


Q ss_pred             EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          206 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       206 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++++|.||+|+|+.|+.+++...++  +++ +|++.||++++| +.|+|||+|||+..+.
T Consensus       249 ~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~  304 (360)
T 3ab1_A          249 TVEADRLLILIGFKSNLGPLARWDL--ELY-ENALVVDSHMKT-SVDGLYAAGDIAYYPG  304 (360)
T ss_dssp             EEECSEEEECCCBCCSCGGGGGSSC--CEE-TTEEECCTTSBC-SSTTEEECSTTEECTT
T ss_pred             EEeCCEEEECCCCCCCHHHHHhhcc--ccc-cCeeeecCCCcC-CCCCEEEecCccCCCC
Confidence            7999999999999999888877655  444 789999999998 8999999999998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.97  E-value=3.5e-30  Score=212.92  Aligned_cols=242  Identities=17%  Similarity=0.206  Sum_probs=165.4

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc-CCccc----ccccc-cccccc--cccEEE
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFG----KRSVI-NHTDYL--VNGRIV   80 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~-~~~~~----~~~~~-~~~~~~--~~~~~~   80 (275)
                      +..++||+|||||++|+++|+.|+ .|++|+|||+.. .++.+....... .+.+.    ...+. ...++.  .++++.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~   89 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLR   89 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            345689999999999999999998 699999999763 333222110000 00010    00000 111111  145666


Q ss_pred             EeeeeEeec---CeE-EecCCeEEeCCEEEEccCCCCCCCchHHHH------------HHHHh---c------CCcchhh
Q 023957           81 ASPAINITE---NEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTER------------LNQYQ---A------GGPTGVE  135 (275)
Q Consensus        81 ~~~~~~~~~---~~v-~~~~~~~~~~~~lilatG~~~~~~~~~~~~------------l~~~~---~------~g~~~~~  135 (275)
                      ...+..++.   ..+ .+.++..+.||++|+|||+.|..|.++...            .....   +      +|.+++|
T Consensus        90 ~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e  169 (335)
T 2a87_A           90 MEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAME  169 (335)
T ss_dssp             CCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHH
T ss_pred             EeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHH
Confidence            555555553   256 667777899999999999886665443211            11110   0      7889999


Q ss_pred             HHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHH-HHHHhCCCEEEcCceeeeecCCCCCceEEcC---CC--cEEee
Q 023957          136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR-DWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TG--DTINA  209 (275)
Q Consensus       136 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~~~~  209 (275)
                      +|..+.  ..+.+++++.+.+.+..      .+.+. +.+++.||++++++.+.+++.+++...+.+.   +|  +++++
T Consensus       170 ~a~~l~--~~g~~V~l~~~~~~~~~------~~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~  241 (335)
T 2a87_A          170 EATFLT--RFARSVTLVHRRDEFRA------SKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPV  241 (335)
T ss_dssp             HHHHHT--TTCSEEEEECSSSSCSS------CTTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECC
T ss_pred             HHHHHH--HhCCeEEEEEcCCcCCc------cHHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeec
Confidence            999998  56899999998876532      12222 3456789999999999999876543344443   44  57999


Q ss_pred             cEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCC
Q 023957          210 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       210 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~  264 (275)
                      |.||+|+|++|+.+++. .+  ++++++|++.||++ ++| +.|+|||+|||+..+
T Consensus       242 D~vi~a~G~~p~~~~~~-~~--l~~~~~G~i~vd~~~~~t-~~~~iya~GD~~~~~  293 (335)
T 2a87_A          242 TGVFVAIGHEPRSGLVR-EA--IDVDPDGYVLVQGRTTST-SLPGVFAAGDLVDRT  293 (335)
T ss_dssp             SCEEECSCEEECCTTTB-TT--BCBCTTSCBCCSTTSSBC-SSTTEEECGGGTCCS
T ss_pred             CEEEEccCCccChhHhh-cc--cccCCCccEEeCCCCCcc-CCCCEEEeeecCCcc
Confidence            99999999999988876 33  46778899999997 566 899999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.97  E-value=9.4e-30  Score=208.12  Aligned_cols=239  Identities=21%  Similarity=0.228  Sum_probs=165.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cCCcc-cc-cccccccccc--cccEEEEe-e
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEPSF-GK-RSVINHTDYL--VNGRIVAS-P   83 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~~--~~~~~~~~-~   83 (275)
                      ++||+|||||++|+++|+.|+ .|++|+|||+.  .|+.|......   ..... .. .......++.  .++++... +
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence            379999999999999999998 69999999864  33333211111   00000 00 0000111111  14566655 5


Q ss_pred             eeEeec-------CeEEecCCeEEeCCEEEEccCCCCCCCchHH------------HHHHHHh-c--------CCcchhh
Q 023957           84 AINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------ERLNQYQ-A--------GGPTGVE  135 (275)
Q Consensus        84 ~~~~~~-------~~v~~~~~~~~~~~~lilatG~~~~~~~~~~------------~~l~~~~-~--------~g~~~~~  135 (275)
                      +..++.       ..+.++++..+.||++|+|||+.|..|.++.            ..+.... .        +|.+++|
T Consensus        79 v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            666642       2566777878999999999998754433210            0111111 1        7889999


Q ss_pred             HHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcC---CCc--EEe
Q 023957          136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TIN  208 (275)
Q Consensus       136 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~  208 (275)
                      +|..+.  ..+.+++++.+.+.+.  .    .+.+.+.+++ .|++++.++.++++..+++.+ .+.+.   +|+  +++
T Consensus       159 ~A~~l~--~~g~~Vtlv~~~~~~~--~----~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLA--GIVEHVTLLEFAPEMK--A----DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE  230 (310)
T ss_dssp             HHHHHH--TTBSEEEEECSSSSCC--S----CHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHH--HhCCEEEEEEeCcccC--c----cHHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            999998  5689999999988752  2    2445666776 699999999999998654443 35543   353  789


Q ss_pred             ecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|.||+|+|++|+.+++...   +.++++|++.||++++| +.|+|||+|||+..|.
T Consensus       231 ~D~vi~a~G~~p~~~~l~~~---l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~  283 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWLEGA---VERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY  283 (310)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS
T ss_pred             cCEEEEeeCCccCchHHhcc---ccccCCCcEEcCCCCcc-CCCCEEEeecccCCcc
Confidence            99999999999998888652   46778899999999997 8999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.97  E-value=6.6e-30  Score=226.44  Aligned_cols=248  Identities=17%  Similarity=0.189  Sum_probs=172.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-C-------Cccccccc---cccc-----------------cCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-E-------YFEITWAS---LRAM-----------------VEPS   61 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~-~-------~~~~~~~~---~~~~-----------------~~~~   61 (275)
                      ..++||+||||||||++||.+|+ .|++|+|||+. +       .+|+.+..   .+..                 ....
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            34689999999999999999998 69999999973 2       13322110   0000                 0000


Q ss_pred             ccc-------ccccccc------------c-c-ccccEEEEeeeeEeecCeEE--ecCC--eEEeCCEEEEccCCCCCCC
Q 023957           62 FGK-------RSVINHT------------D-Y-LVNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        62 ~~~-------~~~~~~~------------~-~-~~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~~~lilatG~~~~~~  116 (275)
                      ...       ..+..+.            . + ..++.++.+.+..++...+.  ..+|  ..+.||+||+|||+.|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p  264 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP  264 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence            000       0000000            0 0 12566676666666666444  3455  4689999999999987766


Q ss_pred             chHHHH-----HHHHhc------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCC
Q 023957          117 KTRTER-----LNQYQA------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  179 (275)
Q Consensus       117 ~~~~~~-----l~~~~~------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  179 (275)
                      +++...     ...+..            +|.+|+|+|..+.  ..+.+++++.+. .+++.+++++.+.+.+.+++.||
T Consensus       265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv  341 (598)
T 2x8g_A          265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLA--SLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGV  341 (598)
T ss_dssp             SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCC
Confidence            543211     111111            8899999999998  458899999988 66677888889999999999999


Q ss_pred             EEEcCceeeeecCC------C---CCceEE--cCCCcEEe--ecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCc
Q 023957          180 DVKLGERVNLDSVS------E---GSDTYL--TSTGDTIN--ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  246 (275)
Q Consensus       180 ~i~~~~~v~~i~~~------~---~~~~v~--~~~g~~~~--~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~  246 (275)
                      ++++++.+.+++..      +   +.+.+.  ..+|++++  +|.||+|+|++|+.+++.....+++++++|+|.||+++
T Consensus       342 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          342 KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            99999887777421      1   233333  45776555  99999999999998876433444577888999999999


Q ss_pred             cccCCCCeEEeccccC
Q 023957          247 RVKGQKNIFAIGDITD  262 (275)
Q Consensus       247 ~~~~~~~v~a~Gd~~~  262 (275)
                      +| +.|+|||+|||+.
T Consensus       422 ~t-s~~~VyA~GD~~~  436 (598)
T 2x8g_A          422 QT-TVSNVYAIGDINA  436 (598)
T ss_dssp             BC-SSTTEEECGGGBT
T ss_pred             cC-CCCCEEEEeeecC
Confidence            98 8999999999964

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.96  E-value=6.4e-29  Score=205.18  Aligned_cols=240  Identities=16%  Similarity=0.194  Sum_probs=163.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcC----CCCcccccccccccc-CCcccc-----cccccccccc--cccE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP----KEYFEITWASLRAMV-EPSFGK-----RSVINHTDYL--VNGR   78 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~----~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~--~~~~   78 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||+    ....+..+....... .+.+..     .......+..  .+++
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            3589999999999999999998 6999999999    333333221110000 000100     0000011111  2466


Q ss_pred             EEEeeeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchH---H-------------HHHHHHh---c-------
Q 023957           79 IVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTR---T-------------ERLNQYQ---A-------  128 (275)
Q Consensus        79 ~~~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~---~-------------~~l~~~~---~-------  128 (275)
                      +....+..++..    .+.+ ++..+.+|++|+|+|+.|..|.++   .             .......   .       
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  165 (333)
T 1vdc_A           87 IFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVI  165 (333)
T ss_dssp             EECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEE
Confidence            666666666532    4655 677899999999999875443221   1             1122211   1       


Q ss_pred             -CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHH-HHHHhCCCEEEcCceeeeecCCCC--Cc-eEEcC-
Q 023957          129 -GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR-DWLISKKVDVKLGERVNLDSVSEG--SD-TYLTS-  202 (275)
Q Consensus       129 -~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~-  202 (275)
                       +|.+++++|..+.  ..+.+++++.+.+.+..      .+.+. +.+++.||+++.++.+.+++.+++  .+ .+.+. 
T Consensus       166 G~G~~g~e~A~~l~--~~g~~V~lv~~~~~~~~------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~  237 (333)
T 1vdc_A          166 GGGDSAMEEANFLT--KYGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN  237 (333)
T ss_dssp             CCSHHHHHHHHHHT--TTSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE
T ss_pred             CCChHHHHHHHHHH--hcCCeEEEEecCCcCCc------cHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEe
Confidence             7889999999998  56899999999876521      23333 445678999999999999986653  32 24443 


Q ss_pred             --CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCC
Q 023957          203 --TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       203 --~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~  264 (275)
                        +|  +++++|.||+|+|++|+..++. .+  ++++++|++.||++ ++| +.|+|||+|||+..+
T Consensus       238 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~--l~~~~~G~i~vd~~~~~t-~~~~vya~GD~~~~~  300 (333)
T 1vdc_A          238 VVTGDVSDLKVSGLFFAIGHEPATKFLD-GG--VELDSDGYVVTKPGTTQT-SVPGVFAAGDVQDKK  300 (333)
T ss_dssp             TTTCCEEEEECSEEEECSCEEESCGGGT-TS--SCBCTTSCBCCCTTSCBC-SSTTEEECGGGGCSS
T ss_pred             cCCCceEEEecCEEEEEeCCccchHHhh-cc--ccccCCCCEEechhhccc-CCCCEEEeeeccCCC
Confidence              45  5799999999999999988876 33  46677899999997 466 899999999999875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.96  E-value=5.8e-28  Score=202.15  Aligned_cols=249  Identities=17%  Similarity=0.261  Sum_probs=165.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCccccccccccc---cCCccc------------------------
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAM---VEPSFG------------------------   63 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~~~~~~~---~~~~~~------------------------   63 (275)
                      ++||+|||||++|+++|++|+ .|+ +|+|||+++ +|..|......   ..+.+.                        
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            479999999999999999998 688 999999998 55433211100   000000                        


Q ss_pred             ---c-ccccc-ccccc--cccEEEEe-eeeEeecC----eEEecCCeEEeCCEEEEccCCC--CCCCc---hHHHH---H
Q 023957           64 ---K-RSVIN-HTDYL--VNGRIVAS-PAINITEN----EVLTAEGRRVVYDYLVIATGHK--DPVPK---TRTER---L  123 (275)
Q Consensus        64 ---~-~~~~~-~~~~~--~~~~~~~~-~~~~~~~~----~v~~~~~~~~~~~~lilatG~~--~~~~~---~~~~~---l  123 (275)
                         . ..... ...+.  .++++... .+..++..    .+.+.++ .+.||++|+|||+.  |.+|.   .....   .
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~~~~~~~~~~~~~  161 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPFKYGIHYSEIEDF  161 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCSSSCEEGGGCSCG
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCCCceechhhcCCh
Confidence               0 00000 00111  14555543 45555432    5556555 68899999999986  44553   00000   1


Q ss_pred             HHHhc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-c------CCcchHHHHHHHHHhCC-CEEEcCceee
Q 023957          124 NQYQA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-F------IGPKAGDKTRDWLISKK-VDVKLGERVN  188 (275)
Q Consensus       124 ~~~~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~g-v~i~~~~~v~  188 (275)
                      ..+..       +|.+|+|+|..+.  ..+.+++++.+.+.+.. .      ..+...+.+.+.+++.| ++++.++.|.
T Consensus       162 ~~~~~~~vvVvG~G~~g~e~a~~l~--~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~  239 (369)
T 3d1c_A          162 DNFNKGQYVVIGGNESGFDAAYQLA--KNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK  239 (369)
T ss_dssp             GGSCSSEEEEECCSHHHHHHHHHHH--HTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred             hhcCCCEEEEECCCcCHHHHHHHHH--hcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence            11111       7889999999998  45889999999887653 1      33445677888888887 9999999999


Q ss_pred             eecCCCCCceEEcCCCcEEe-ecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          189 LDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       189 ~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +++.+++...+.+.+|+++. +|.||+|+|++|+.+++....+  + +++|++.||+.++.+++|+||++|||+..+...
T Consensus       240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~--~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~  316 (369)
T 3d1c_A          240 DIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF--V-TTNQDIKLTTHDESTRYPNIFMIGATVENDNAK  316 (369)
T ss_dssp             EEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHS--C-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCC
T ss_pred             EEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhc--c-CCCCCEEechhhcccCCCCeEEeccccccCCee
Confidence            99655555667788887665 5999999999998866664443  4 678899999875544899999999999887654


Q ss_pred             C
Q 023957          268 S  268 (275)
Q Consensus       268 ~  268 (275)
                      .
T Consensus       317 ~  317 (369)
T 3d1c_A          317 L  317 (369)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.96  E-value=4e-28  Score=211.26  Aligned_cols=241  Identities=20%  Similarity=0.251  Sum_probs=166.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cCCcc-cc-cccccccccc--cccEEEEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEPSF-GK-RSVINHTDYL--VNGRIVAS   82 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~~--~~~~~~~~   82 (275)
                      ...+||+|||||+||+++|++|+ .|++|+|+|+.  .|+.+......   ..... .. ..........  .++++...
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~  287 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS  287 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence            34689999999999999999998 69999999873  34333211111   00000 00 0000011111  14566555


Q ss_pred             -eeeEeec-------CeEEecCCeEEeCCEEEEccCCCCCCCchHHH-HH-----------H-H-Hhc-------CCcch
Q 023957           83 -PAINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RL-----------N-Q-YQA-------GGPTG  133 (275)
Q Consensus        83 -~~~~~~~-------~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~-~l-----------~-~-~~~-------~g~~~  133 (275)
                       ++..++.       ..+.++++..+.+|++|+|||+.|..|.++.. ..           . . +..       +|.+|
T Consensus       288 ~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g  367 (521)
T 1hyu_A          288 QSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSG  367 (521)
T ss_dssp             CCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHH
T ss_pred             CEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHH
Confidence             5666642       25777788889999999999987554332110 00           0 0 011       78899


Q ss_pred             hhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcC---CCc--E
Q 023957          134 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--T  206 (275)
Q Consensus       134 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~  206 (275)
                      +|+|..+..  .+.+++++.+.+.+..      .+.+.+.+++ .||++++++.++++..+++.+ .+.+.   +|+  +
T Consensus       368 ~E~A~~L~~--~g~~Vtlv~~~~~l~~------~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  439 (521)
T 1hyu_A          368 VEAAIDLAG--IVEHVTLLEFAPEMKA------DQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS  439 (521)
T ss_dssp             HHHHHHHHH--HBSEEEEECSSSSCCS------CHHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHh--hCCEEEEEEeCcccCc------CHHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence            999999984  5889999998877542      2445666776 599999999999998655443 35543   353  6


Q ss_pred             EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          207 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       207 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +++|.||+++|..|+.+++.. .  ++++++|++.||++++| +.|+|||+|||+..|.
T Consensus       440 i~~D~vi~a~G~~pn~~~l~~-~--l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~~~  494 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTHWLEG-A--LERNRMGEIIIDAKCET-SVKGVFAAGDCTTVPY  494 (521)
T ss_dssp             EECSEEEECCCEEESCGGGTT-T--SCBCTTSCBCCCTTCBC-SSTTEEECSTTBCCSS
T ss_pred             EEcCEEEECcCCCCCchHHhh-h--hccCCCCcEEeCCCCCC-CCCCEEEeecccCCCc
Confidence            899999999999999888865 2  46778899999999998 8999999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.4e-27  Score=198.66  Aligned_cols=237  Identities=17%  Similarity=0.200  Sum_probs=149.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc------------CCcccc--------ccccc-c
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV------------EPSFGK--------RSVIN-H   70 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~------------~~~~~~--------~~~~~-~   70 (275)
                      ++||+|||||++|+++|+.|+ +|++|+|||+++.+|..|.......            ......        ..+.. .
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            479999999999999999998 6999999999998876654311000            000000        00000 0


Q ss_pred             cccc--cccEEEE-eeeeEeec--C--e-EEecCCeEEeCCEEEEccCC--CCCCCchHHH-H-------------HHHH
Q 023957           71 TDYL--VNGRIVA-SPAINITE--N--E-VLTAEGRRVVYDYLVIATGH--KDPVPKTRTE-R-------------LNQY  126 (275)
Q Consensus        71 ~~~~--~~~~~~~-~~~~~~~~--~--~-v~~~~~~~~~~~~lilatG~--~~~~~~~~~~-~-------------l~~~  126 (275)
                      .++.  .++++.. .++..++.  .  . +.++++ .+.||++|+|||.  .|..|.++.. .             ...+
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPF  161 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhc
Confidence            0000  1334432 34444432  2  3 666666 8999999999995  4444432110 0             0011


Q ss_pred             hc-------CCcchhhHHHHHhhhCCCCEEEEEeCC-CcccCcC--CcchHHHHHHHHH---------------------
Q 023957          127 QA-------GGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEFI--GPKAGDKTRDWLI---------------------  175 (275)
Q Consensus       127 ~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~-~~~~~~~--~~~~~~~~~~~~~---------------------  175 (275)
                      ..       +|.+++|+|..+..  .+ +++++.+. +.+.+..  ...+.+.+.+.+.                     
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~--~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVST--VA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMV  238 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHh--hC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccC
Confidence            11       88999999999984  34 69999887 3444321  1122222222221                     


Q ss_pred             -------hCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC--c
Q 023957          176 -------SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN--L  246 (275)
Q Consensus       176 -------~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~--~  246 (275)
                             +.|+ +..+..+.+++.    ..+.+.+|+++++|.||+|+|++|+.+++...++  . +++|++.||++  +
T Consensus       239 ~~~~~~~~~g~-i~~~~~v~~~~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl--~-~~~G~i~vd~~~l~  310 (357)
T 4a9w_A          239 PPVLDARARGV-LAAVPPPARFSP----TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDL--V-TPQGQVEVDGSGLR  310 (357)
T ss_dssp             HHHHHHHHTTC-CCEECCCSEEET----TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTC--B-CTTSCBCBCTTSCB
T ss_pred             hhHHHHHhcCc-eEEecCcceEeC----CeeEECCCCEecCCEEEECCCcCCCCcccCcccc--c-CCCCCccccCCccc
Confidence                   2343 444455555543    2478889999999999999999999899887665  4 67899999999  7


Q ss_pred             cccCCCCeEEec--cccC
Q 023957          247 RVKGQKNIFAIG--DITD  262 (275)
Q Consensus       247 ~~~~~~~v~a~G--d~~~  262 (275)
                      ++ +.|+|||+|  ||+.
T Consensus       311 ~t-~~~~vya~Gd~d~~~  327 (357)
T 4a9w_A          311 AL-AVPSVWLLGYGDWNG  327 (357)
T ss_dssp             BS-SCTTEEECSSCGGGS
T ss_pred             CC-CCCCeEEeccccccc
Confidence            77 899999999  6665

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.94  E-value=6.5e-27  Score=201.53  Aligned_cols=248  Identities=15%  Similarity=0.178  Sum_probs=159.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-----CcEEEEcCCCCccccccccccc--cC------------Cccc---------
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-----ADVTLIDPKEYFEITWASLRAM--VE------------PSFG---------   63 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-----~~v~vie~~~~~~~~~~~~~~~--~~------------~~~~---------   63 (275)
                      ++||+|||||++|+++|..|+ .|     .+|+|||+++.+++....+...  +.            +...         
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            469999999999999999998 57     9999999999887544322100  00            0000         


Q ss_pred             ---------------c-cccccc----cccccccEEEE-eeeeEeecC---------eEEecCCe----EEeCCEEEEcc
Q 023957           64 ---------------K-RSVINH----TDYLVNGRIVA-SPAINITEN---------EVLTAEGR----RVVYDYLVIAT  109 (275)
Q Consensus        64 ---------------~-~~~~~~----~~~~~~~~~~~-~~~~~~~~~---------~v~~~~~~----~~~~~~lilat  109 (275)
                                     . ..+..+    .+.+ +..+.. .++..++..         .+.+.++.    .+.||+||+||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAt  188 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHF-QEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP  188 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTC-TTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECC
Confidence                           0 000000    0001 122322 234444321         45555554    78999999999


Q ss_pred             CCCCCCCch-H---H-----------HHHHHHh-----c-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC
Q 023957          110 GHKDPVPKT-R---T-----------ERLNQYQ-----A-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI  162 (275)
Q Consensus       110 G~~~~~~~~-~---~-----------~~l~~~~-----~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~  162 (275)
                      |+.|.+|.. .   .           ..+..+.     .       +|.+|+|+|..|....++.+++++.+.+.+.+..
T Consensus       189 G~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~  268 (463)
T 3s5w_A          189 GGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPAD  268 (463)
T ss_dssp             CCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCC
T ss_pred             CCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCcc
Confidence            998877751 1   0           1122221     1       8899999999999777799999999988764421


Q ss_pred             C---------c-----------chHHHHHHHHHh--------------------------CCCEEEcCceeeeecCCCCC
Q 023957          163 G---------P-----------KAGDKTRDWLIS--------------------------KKVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       163 ~---------~-----------~~~~~~~~~~~~--------------------------~gv~i~~~~~v~~i~~~~~~  196 (275)
                      +         +           .....+.+.+..                          .|++++.+++|++++.+++.
T Consensus       269 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~  348 (463)
T 3s5w_A          269 DSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG  348 (463)
T ss_dssp             CCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE
T ss_pred             CCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE
Confidence            1         1           111111111111                          69999999999999877777


Q ss_pred             ceEEcC---CCc--EEeecEEEEcCCCCCC--chhhcccccccccCCCCceEeCCCccccC----CCCeEEeccccCCCC
Q 023957          197 DTYLTS---TGD--TINADCHFLCTGKPVG--SDWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDIRV  265 (275)
Q Consensus       197 ~~v~~~---~g~--~~~~d~vv~a~G~~~~--~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----~~~v~a~Gd~~~~~~  265 (275)
                      +.+.+.   +|+  ++++|.||+|+|++|+  .+++.....  .+   |++.||+++++..    .|+||++|||.....
T Consensus       349 ~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~--~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g  423 (463)
T 3s5w_A          349 IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAE--YL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG  423 (463)
T ss_dssp             EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGG--GB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC
T ss_pred             EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHH--Hh---CCcccCcccccccCCCCCCeEEEcCCCcccCC
Confidence            667665   665  4999999999999998  566655442  12   8899999998743    456999999986554


Q ss_pred             C
Q 023957          266 S  266 (275)
Q Consensus       266 ~  266 (275)
                      .
T Consensus       424 ~  424 (463)
T 3s5w_A          424 L  424 (463)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.94  E-value=1.5e-27  Score=203.78  Aligned_cols=240  Identities=18%  Similarity=0.113  Sum_probs=154.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ...+||+|||||+|||++|+.|+ .|++|+|||+.+.+|+.+..  +...............+++  .++++..+..+. 
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-  196 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY--GIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG-  196 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH--TSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee--cCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec-
Confidence            35689999999999999999998 69999999999887644321  0101111111111111111  134444332221 


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCC-C---CCCchH-------HHHHH--------H--------Hh-c---------CC
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTR-------TERLN--------Q--------YQ-A---------GG  130 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~-~---~~~~~~-------~~~l~--------~--------~~-~---------~g  130 (275)
                        ..+.+++. ...||++++|||+. |   .+|+..       .+.+.        .        +. .         +|
T Consensus       197 --~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG  273 (456)
T 2vdc_G          197 --RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG  273 (456)
T ss_dssp             --TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred             --cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence              11222222 35799999999986 3   333321       11121        0        01 1         78


Q ss_pred             cchhhHHHHHhhhCCCC-EEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEE---c--
Q 023957          131 PTGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYL---T--  201 (275)
Q Consensus       131 ~~~~~~a~~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~---~--  201 (275)
                      .+|+++|..+..  .+. +|+++.+.+.. ++...    .. .+.+++.||++++++.++++..++..  +.+.   +  
T Consensus       274 ~~a~d~A~~~~r--~Ga~~Vtiv~r~~~~~~p~~~----~e-~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~  346 (456)
T 2vdc_G          274 DTAMDCVRTAIR--QGATSVKCLYRRDRKNMPGSQ----RE-VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGV  346 (456)
T ss_dssp             HHHHHHHHHHHH--TTCSEEEEECSSCSTTCSSCH----HH-HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEE
T ss_pred             hhHHHHHHHHHH--cCCCEEEEEEeCCccCCCCCH----HH-HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecc
Confidence            899999988763  354 69999988765 33222    12 34577789999999998888643211  2221   1  


Q ss_pred             --C---------CC--cEEeecEEEEcCCCCCCch--hhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957          202 --S---------TG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       202 --~---------~g--~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~  265 (275)
                        .         +|  .++++|.||+|+|+.|+..  ++...++  +++++|++.||++ ++| +.|+|||+|||+..+.
T Consensus       347 ~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl--~~~~~G~i~vd~~~~~T-s~~~VfA~GD~~~g~~  423 (456)
T 2vdc_G          347 ADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPEL--KVTRWGTLLVDHRTKMT-NMDGVFAAGDIVRGAS  423 (456)
T ss_dssp             EEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTS--CBCTTSSBCCCTTTCBC-SSTTEEECGGGGSSCC
T ss_pred             cCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCe--eECCCCCEEECCCCCcC-CCCCEEEeccccCCch
Confidence              1         23  3789999999999999765  6665554  6788999999998 897 8999999999998664


Q ss_pred             C
Q 023957          266 S  266 (275)
Q Consensus       266 ~  266 (275)
                      .
T Consensus       424 ~  424 (456)
T 2vdc_G          424 L  424 (456)
T ss_dssp             S
T ss_pred             H
Confidence            3

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.93  E-value=1.2e-25  Score=192.39  Aligned_cols=241  Identities=14%  Similarity=0.095  Sum_probs=154.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhhc--------CCcEEEEcCCCCccccccccccccCCc-ccccccccccccc--cccEEEE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQF--------SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVA   81 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~~--------g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~   81 (275)
                      ++||+|||||+||+++|..|.+        +++|+|||+.+.+++.+.  .+..... ..........+++  .+++++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~--~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~   80 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR--SGVAPDHPKIKSISKQFEKTAEDPRFRFFG   80 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH--HTSCTTCTGGGGGHHHHHHHHTSTTEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc--cccCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            4799999999999999999865        899999999987664331  1111100 0011111111111  2455543


Q ss_pred             eeeeEeecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH------HHHH-H----------H---Hhc-------CC
Q 023957           82 SPAINITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR------TERL-N----------Q---YQA-------GG  130 (275)
Q Consensus        82 ~~~~~~~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~------~~~l-~----------~---~~~-------~g  130 (275)
                      ..  .+. ..+.++++ .+.||+||+|||+. |.   +|+.+      ...+ .          .   +..       +|
T Consensus        81 ~v--~v~-~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G  156 (456)
T 1lqt_A           81 NV--VVG-EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNG  156 (456)
T ss_dssp             SC--CBT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCS
T ss_pred             eE--EEC-CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCC
Confidence            31  222 23444333 47899999999996 33   44422      1111 0          0   111       78


Q ss_pred             cchhhHHHHHhhh-------------------CCCCEEEEEeCCCcccCcCC-------------------cch------
Q 023957          131 PTGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIG-------------------PKA------  166 (275)
Q Consensus       131 ~~~~~~a~~l~~~-------------------~~~~~v~~~~~~~~~~~~~~-------------------~~~------  166 (275)
                      .+|+|+|..+...                   ....+++++.+...+...+.                   .++      
T Consensus       157 ~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~  236 (456)
T 1lqt_A          157 NVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDE  236 (456)
T ss_dssp             HHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHH
T ss_pred             HHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhh
Confidence            8999999998842                   12359999999876543222                   111      


Q ss_pred             ------------HHHHHHHHHh------CCCEEEcCceeeeecCCCCCceEEcC----------------CC--cEEeec
Q 023957          167 ------------GDKTRDWLIS------KKVDVKLGERVNLDSVSEGSDTYLTS----------------TG--DTINAD  210 (275)
Q Consensus       167 ------------~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~----------------~g--~~~~~d  210 (275)
                                  .+.+.+.+++      +||++++++.+.++..++....+.+.                +|  ++++||
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d  316 (456)
T 1lqt_A          237 DAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQ  316 (456)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECS
T ss_pred             hhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcC
Confidence                        2344455555      78999999999999865432234442                34  469999


Q ss_pred             EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .||+++|++|+. +   .  +++++++|++.+|++++.++.|+|||+|||+..|.
T Consensus       317 ~vi~a~G~~p~~-l---~--gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~  365 (456)
T 1lqt_A          317 LVVRSVGYRGVP-T---P--GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT  365 (456)
T ss_dssp             EEEECSCEECCC-C---T--TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSC
T ss_pred             EEEEccccccCC-C---C--CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCc
Confidence            999999999976 2   2  34677889999999999558999999999997554

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.93  E-value=3.2e-26  Score=198.13  Aligned_cols=233  Identities=18%  Similarity=0.157  Sum_probs=152.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc-cC-Cccccccccccc-ccccccEEE-EeeeeEe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VE-PSFGKRSVINHT-DYLVNGRIV-ASPAINI   87 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~   87 (275)
                      ++||+|||||++|+++|++|+ . ++|+|||+++.+|+.+...... .. .....+...... .+..++++. ...+..+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGV  186 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            479999999999999999997 6 9999999999887654432110 00 000000000111 112244442 2333333


Q ss_pred             ec--CeE--Ee-cCCe--EEeCCEEEEccCCCCCCCchHHHHHHHHhcCCcchhhHHHHHhh---hCCCCEEEEEeCCCc
Q 023957           88 TE--NEV--LT-AEGR--RVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAV---DFPEKKVTLVHKGSR  157 (275)
Q Consensus        88 ~~--~~v--~~-~~~~--~~~~~~lilatG~~~~~~~~~~~~l~~~~~~g~~~~~~a~~l~~---~~~~~~v~~~~~~~~  157 (275)
                      +.  ..+  .. +++.  .+.||++++|||+.|..|.++...+     .+......+..+..   ..++.++.++..+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~-----~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~  261 (493)
T 1y56_A          187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM-----PGVFRRDFALEVMNVWEVAPGRKVAVTGSKAD  261 (493)
T ss_dssp             EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS-----TTEEEHHHHHHHHHTSCBCSCSEEEEESTTHH
T ss_pred             EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC-----CCEEEcHHHHHHHHhcccCCCCEEEEECCCHH
Confidence            32  222  11 3443  6899999999999876654421111     11222222222221   134567766643221


Q ss_pred             ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCC
Q 023957          158 LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH  237 (275)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~  237 (275)
                                 .+.+.+++.|++++.++.|.+++.+++...+.+.+|+++++|.||+++|.+|+.+++...++.+.++++
T Consensus       262 -----------gle~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~  330 (493)
T 1y56_A          262 -----------EVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRG  330 (493)
T ss_dssp             -----------HHHHHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETT
T ss_pred             -----------HHHHHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCC
Confidence                       122667788999999999999987655556778889899999999999999999899888876666678


Q ss_pred             CceE-eCCCccccCCCCeEEeccccCCC
Q 023957          238 GMLM-VDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       238 g~i~-v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      |++. ||++++  +.|+||++|||+..+
T Consensus       331 g~i~~vd~~~~--s~~~vya~GD~~~~~  356 (493)
T 1y56_A          331 YYSPVLDEYHR--IKDGIYVAGSAVSIK  356 (493)
T ss_dssp             EEEECCCTTSE--EETTEEECSTTTCCC
T ss_pred             ceeeccccccC--cCCCEEEEeccCCcc
Confidence            8888 899988  689999999999764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.92  E-value=1.2e-26  Score=208.32  Aligned_cols=230  Identities=17%  Similarity=0.116  Sum_probs=153.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc---cccEEEEeeeeE
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN   86 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   86 (275)
                      ...+||+|||||++||+||+.|+ +|++|+|||+++.+|+.+.......................   .++++...    
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~----  464 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRE----  464 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESS----
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEEC----
Confidence            34689999999999999999998 69999999999888755432111111100011111111111   12333222    


Q ss_pred             eecCeEEecCCeEEeCCEEEEccCCCCC-----------CCchH------H-HHHHHH-hc----------CCcchhhHH
Q 023957           87 ITENEVLTAEGRRVVYDYLVIATGHKDP-----------VPKTR------T-ERLNQY-QA----------GGPTGVELA  137 (275)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~lilatG~~~~-----------~~~~~------~-~~l~~~-~~----------~g~~~~~~a  137 (275)
                         ..+...++..+.||++++|||+.|.           +|+.+      . +.+... ..          +|.+++++|
T Consensus       465 ---~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A  541 (690)
T 3k30_A          465 ---SPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVA  541 (690)
T ss_dssp             ---CCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHH
T ss_pred             ---CeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHH
Confidence               1222333456789999999998732           33321      1 111110 00          467899999


Q ss_pred             HHHhhhCCCCEEEEEeCCCcccCcCC-cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cCCCcEEeecEEE
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTINADCHF  213 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~~~~d~vv  213 (275)
                      ..+.  ..+.+++++++.+.+.+... +.....+.+.+++.||+++++++|++++.++  ..+.   ..+++++++|.||
T Consensus       542 ~~L~--~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV  617 (690)
T 3k30_A          542 ELLA--QKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVV  617 (690)
T ss_dssp             HHHH--HTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEE
T ss_pred             HHHH--hCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEE
Confidence            9998  45889999999888765432 4567788889999999999999999998543  3333   2355689999999


Q ss_pred             EcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          214 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       214 ~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +|+|++|+..++...+.      .+.       +| +.|+||++|||+..+.
T Consensus       618 ~A~G~~p~~~l~~~l~~------~~~-------~t-~~~~VyaiGD~~~~~~  655 (690)
T 3k30_A          618 MVTARLPREELYLDLVA------RRD-------AG-EIASVRGIGDAWAPGT  655 (690)
T ss_dssp             EESCEEECCHHHHHHHH------HHH-------HT-SCSEEEECGGGTSCBC
T ss_pred             ECCCCCCChHHHHHHhh------hhc-------cc-CCCCEEEEeCCCchhh
Confidence            99999999887765432      111       55 8999999999998654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.92  E-value=1.2e-24  Score=186.95  Aligned_cols=228  Identities=15%  Similarity=0.210  Sum_probs=146.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh----cCCc---EEEEcCCCCccccccccc--cc-----------c---------------
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ----FSAD---VTLIDPKEYFEITWASLR--AM-----------V---------------   58 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~----~g~~---v~vie~~~~~~~~~~~~~--~~-----------~---------------   58 (275)
                      +||+|||||++|+++|..|+    .|++   |+|||+++.+|+.|....  +.           .               
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            69999999999999999985    4899   999999988876654211  00           0               


Q ss_pred             CCcccc------ccccc-------cccccc--ccE--EE-EeeeeEee--cC----eEEecC---C--eEEeCCEEEEcc
Q 023957           59 EPSFGK------RSVIN-------HTDYLV--NGR--IV-ASPAINIT--EN----EVLTAE---G--RRVVYDYLVIAT  109 (275)
Q Consensus        59 ~~~~~~------~~~~~-------~~~~~~--~~~--~~-~~~~~~~~--~~----~v~~~~---~--~~~~~~~lilat  109 (275)
                      ...+..      .....       ...+..  ++.  +. ...+..++  ..    .+.+.+   +  ..+.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            000000      00000       000000  222  22 33444443  22    455543   3  568899999999


Q ss_pred             C--CCCCCCchHH-HH-------------HHHHhc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcch
Q 023957          110 G--HKDPVPKTRT-ER-------------LNQYQA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA  166 (275)
Q Consensus       110 G--~~~~~~~~~~-~~-------------l~~~~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~  166 (275)
                      |  +.|..|.++. +.             ...+..       +|.+|+|+|..+.  ..+.+++++.+.+.++....   
T Consensus       163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~--~~g~~V~li~~~~~~~~~~~---  237 (464)
T 2xve_A          163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCY--KYGAKKLISCYRTAPMGYKW---  237 (464)
T ss_dssp             CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHH--HTTCSEEEEECSSCCCCCCC---
T ss_pred             CCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHH--HhCCeEEEEEECCCCCCCCC---
Confidence            9  6666554321 00             001111       8999999999998  46889999998877654211   


Q ss_pred             HHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCce-EeCCC
Q 023957          167 GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML-MVDEN  245 (275)
Q Consensus       167 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i-~v~~~  245 (275)
                               ..||+++  ..|++++.+    .+++.||+++++|.||+|+|++|+.+++... +++.++.++++ ....+
T Consensus       238 ---------~~~V~~~--~~V~~i~~~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~-~gl~~~~~~~v~~~~~~  301 (464)
T 2xve_A          238 ---------PENWDER--PNLVRVDTE----NAYFADGSSEKVDAIILCTGYIHHFPFLNDD-LRLVTNNRLWPLNLYKG  301 (464)
T ss_dssp             ---------CTTEEEC--SCEEEECSS----EEEETTSCEEECSEEEECCCBCCCCTTBCTT-TCCCCCSSSCCSSEETT
T ss_pred             ---------CCceEEc--CCeEEEeCC----EEEECCCCEEeCCEEEECCCCCCCCCCcCcc-cccccCCCcccccccce
Confidence                     1477776  678888632    4778899999999999999999998888752 23355555465 22222


Q ss_pred             -ccccCCCCeEEeccccCC
Q 023957          246 -LRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       246 -~~~~~~~~v~a~Gd~~~~  263 (275)
                       +++ +.|+||++|||+..
T Consensus       302 ~~~t-~~p~i~aiGd~~~~  319 (464)
T 2xve_A          302 VVWE-DNPKFFYIGMQDQW  319 (464)
T ss_dssp             TEES-SSTTEEECSCSCCS
T ss_pred             EecC-CCCCEEEEeCcccc
Confidence             455 89999999998763

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.92  E-value=6.7e-26  Score=210.78  Aligned_cols=241  Identities=16%  Similarity=0.163  Sum_probs=156.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCccccccccccccC-Ccccccccccccccc--cccEEEEeeeeE
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYL--VNGRIVASPAIN   86 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (275)
                      ..+||+||||||||++||+.|+ .|+ +|+|||+++.+|+...   ..+. ............+++  .++++..+..+.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~---~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  262 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST---SEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLS  262 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH---HTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc---ccCCcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence            3579999999999999999998 698 7999999987764321   1111 011111111111111  145555544332


Q ss_pred             eecCeEEecCCeEEeCCEEEEccCCC-CCCCc----hH--------HHHHHHH---------------hc---------C
Q 023957           87 ITENEVLTAEGRRVVYDYLVIATGHK-DPVPK----TR--------TERLNQY---------------QA---------G  129 (275)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~lilatG~~-~~~~~----~~--------~~~l~~~---------------~~---------~  129 (275)
                        .+.+.++++..+.||+|++|||+. |..++    ..        .+.+...               ..         +
T Consensus       263 --~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGg  340 (1025)
T 1gte_A          263 --ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA  340 (1025)
T ss_dssp             --TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECS
T ss_pred             --cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECC
Confidence              123444444457899999999984 54322    11        1122211               11         7


Q ss_pred             CcchhhHHHHHhhhCCC-CEEEEEeCCC-cccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcC----
Q 023957          130 GPTGVELAGEIAVDFPE-KKVTLVHKGS-RLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTS----  202 (275)
Q Consensus       130 g~~~~~~a~~l~~~~~~-~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~----  202 (275)
                      |.+|+|+|..+..  .+ .+|+++.+.+ ..++..+.+     .+.+++.|++++.++.+.++..+++.+ .+.+.    
T Consensus       341 G~~g~e~A~~~~~--~G~~~Vtvv~r~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~  413 (1025)
T 1gte_A          341 GDTAFDCATSALR--CGARRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQ  413 (1025)
T ss_dssp             SHHHHHHHHHHHH--TTCSEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ChHHHHHHHHHHH--cCCCEEEEEEecChhhCCCCHHH-----HHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEE
Confidence            8899999998873  45 4899999887 333433222     245677899999999998887543332 23321    


Q ss_pred             --CC---------cEEeecEEEEcCCCCC-CchhhcccccccccCCCCceEeCC-CccccCCCCeEEeccccCCCCC
Q 023957          203 --TG---------DTINADCHFLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       203 --~g---------~~~~~d~vv~a~G~~~-~~~~~~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                        +|         .++++|.||+|+|..| +..++... .+++++++|++.||+ +++| +.|+|||+|||+..+..
T Consensus       414 ~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~-~gl~~~~~G~I~vd~~~~~T-s~~~VfA~GD~~~~~~~  488 (1025)
T 1gte_A          414 DETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEAL-SPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMANT  488 (1025)
T ss_dssp             CTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHT-TTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCCC
T ss_pred             cCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcc-cCceECCCCCEEECCCCCcc-CCCCEEEeCCCCCCchH
Confidence              22         3689999999999976 45565542 133677889999997 7998 89999999999986543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.92  E-value=8.2e-25  Score=202.25  Aligned_cols=234  Identities=18%  Similarity=0.148  Sum_probs=153.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc-cccCCccccccccccc-c--cccccEEEEe-eeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-AMVEPSFGKRSVINHT-D--YLVNGRIVAS-PAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~   86 (275)
                      ++||+|||||+||++||..|+ .|++|+|||+++.+|+.+...+ ..+............. +  .+.++++... .+..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            579999999999999999998 6999999999988775443210 0111000000000000 0  0123444322 2333


Q ss_pred             eecC-------------eEEe------cCCeEEeCCEEEEccCCCCCCCchH---------HHH----HHHH---h-c--
Q 023957           87 ITEN-------------EVLT------AEGRRVVYDYLVIATGHKDPVPKTR---------TER----LNQY---Q-A--  128 (275)
Q Consensus        87 ~~~~-------------~v~~------~~~~~~~~~~lilatG~~~~~~~~~---------~~~----l~~~---~-~--  128 (275)
                      ++..             .+..      .++..+.||++|+|||+.|..|.++         ...    +..+   . +  
T Consensus       208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~v  287 (965)
T 2gag_A          208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARI  287 (965)
T ss_dssp             EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSE
T ss_pred             eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeE
Confidence            3221             1111      1124689999999999975543321         111    2211   1 1  


Q ss_pred             ----CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCC--CCCceEEcC
Q 023957          129 ----GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSDTYLTS  202 (275)
Q Consensus       129 ----~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~~v~~~  202 (275)
                          +|.+++|+|..+.  ..+.+++++++.+.+..       .  .+.+++.||+++.++.|.+++.+  ++...+++.
T Consensus       288 vViGgG~~g~E~A~~L~--~~G~~Vtvv~~~~~~~~-------~--~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~  356 (965)
T 2gag_A          288 AVATTNDSAYELVRELA--ATGGVVAVIDARSSISA-------A--AAQAVADGVQVISGSVVVDTEADENGELSAIVVA  356 (965)
T ss_dssp             EEEESSTTHHHHHHHHG--GGTCCSEEEESCSSCCH-------H--HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHHHH--HcCCcEEEEECCCccch-------h--HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEE
Confidence                8889999999998  45777999999877532       1  56678899999999999999863  332245544


Q ss_pred             C-------C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccc----cCCCCeEEeccccCCCC
Q 023957          203 T-------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV----KGQKNIFAIGDITDIRV  265 (275)
Q Consensus       203 ~-------g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~----~~~~~v~a~Gd~~~~~~  265 (275)
                      +       |  ++++||.|++++|.+|+..++...        .+.+.+|++++.    ++.|+|||+|||+..+.
T Consensus       357 ~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~--------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~  424 (965)
T 2gag_A          357 ELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR--------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLD  424 (965)
T ss_dssp             EECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT--------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCS
T ss_pred             eccccCCCCceEEEEcCEEEECCCcCcChHHHHhC--------CCcEEEcCcccccccCCCCCCEEEEEecCCchh
Confidence            3       5  589999999999999998876543        367888887761    38999999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.92  E-value=2.2e-26  Score=207.44  Aligned_cols=235  Identities=17%  Similarity=0.089  Sum_probs=149.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccc-ccccccEEEEeeeeEee
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINIT   88 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   88 (275)
                      ...+||+|||||+||++||+.|+ +|++|+|||+++.+|+.+.......... .......+. ............++.+.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~-~~~~~~~~~~~~i~~~~~~~~~~v~i~  465 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLG-EWSYHRDYRETQITKLLKKNKESQLAL  465 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCG-GGHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChH-HHHHHHHHHHHHHHHhhcccCCceEEE
Confidence            44689999999999999999998 6999999999988775443211110000 000000000 00000000000112222


Q ss_pred             c-CeEEecCCeEEeCCEEEEccCCCC--------C---CCchH--------H-HHHHHH--hc---------CCcchhhH
Q 023957           89 E-NEVLTAEGRRVVYDYLVIATGHKD--------P---VPKTR--------T-ERLNQY--QA---------GGPTGVEL  136 (275)
Q Consensus        89 ~-~~v~~~~~~~~~~~~lilatG~~~--------~---~~~~~--------~-~~l~~~--~~---------~g~~~~~~  136 (275)
                      . ..+.++++..+.||+||+|||+.|        .   +|+..        . +.+...  ..         +|.+|+|+
T Consensus       466 ~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~  545 (729)
T 1o94_A          466 GQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSL  545 (729)
T ss_dssp             SCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHH
T ss_pred             eCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHH
Confidence            1 234444445678999999999872        2   33321        0 111110  00         56889999


Q ss_pred             HHHHhhhCCCCEEEEEeCCCcccC--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE--cCCC-cE-----
Q 023957          137 AGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL--TSTG-DT-----  206 (275)
Q Consensus       137 a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~--~~~g-~~-----  206 (275)
                      |..+.  ..+.+|+++.+.+ +.+  ..+.. ...+.+.+++.||+++.++.+++++.+  ...+.  ..++ +.     
T Consensus       546 A~~l~--~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~~~~~  619 (729)
T 1o94_A          546 AEKLA--TAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTYRGP  619 (729)
T ss_dssp             HHHHH--HTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTCSCSCCCCCCT
T ss_pred             HHHHH--HcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecCCceEEecccc
Confidence            99998  4588999999988 543  12222 466778888999999999999999743  23332  2233 22     


Q ss_pred             -------------EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          207 -------------INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       207 -------------~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                                   +++|.||+|+|.+|+..++.....          .+|++++| +.|+|||+|||+..
T Consensus       620 ~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~----------~vd~~~~t-~~~~VyAiGD~~~~  678 (729)
T 1o94_A          620 GVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA----------RESEWAEN-DIKGIYLIGDAEAP  678 (729)
T ss_dssp             TSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH----------TGGGTGGG-TCCEEEECGGGTSC
T ss_pred             cccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh----------hccccccc-CCCCeEEEeCccch
Confidence                         999999999999999887654321          26788888 89999999999974

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.92  E-value=9.9e-25  Score=186.85  Aligned_cols=241  Identities=15%  Similarity=0.120  Sum_probs=151.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCccccccccccccCCccc--ccccccccccc--cccEEEEeee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIVASPA   84 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~   84 (275)
                      ..+||+|||||++|+++|..|+ .|  ++|+|||+++.+++.+.   ....+.+.  ........+++  .++++.....
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~---~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~   81 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR---FGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE   81 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH---HTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee---cccCCCCccHHHHHHHHHHHHHhCCcEEEeeeE
Confidence            3579999999999999999997 46  99999999987764331   11111111  11111111111  1344443322


Q ss_pred             eEeecCeEEecCCeEEeCCEEEEccCCCC-C---CCchH------HHHH-H-------------HHhc-------CCcch
Q 023957           85 INITENEVLTAEGRRVVYDYLVIATGHKD-P---VPKTR------TERL-N-------------QYQA-------GGPTG  133 (275)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~lilatG~~~-~---~~~~~------~~~l-~-------------~~~~-------~g~~~  133 (275)
                      +  . ..+.+++ ..+.||+||+|||+.+ .   +|+.+      ...+ .             .+..       +|.+|
T Consensus        82 v--~-~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g  157 (460)
T 1cjc_A           82 V--G-RDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVA  157 (460)
T ss_dssp             B--T-TTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHH
T ss_pred             E--e-eEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHH
Confidence            2  1 2233322 2468999999999883 3   44321      1111 1             1111       88899


Q ss_pred             hhHHHHHhh-------------------hCCCCEEEEEeCCCccc--------------CcCC-----cc----------
Q 023957          134 VELAGEIAV-------------------DFPEKKVTLVHKGSRLL--------------EFIG-----PK----------  165 (275)
Q Consensus       134 ~~~a~~l~~-------------------~~~~~~v~~~~~~~~~~--------------~~~~-----~~----------  165 (275)
                      +|+|..|..                   .....+++++.+...+.              +..+     .+          
T Consensus       158 ~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~  237 (460)
T 1cjc_A          158 LDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKE  237 (460)
T ss_dssp             HHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTT
T ss_pred             HHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhh
Confidence            999999873                   12234899999887541              1100     01          


Q ss_pred             -------hHHHHHHHHHh--------------CCCEEEcCceeeeecCCC-C-Cc-eEEcC---------------CC--
Q 023957          166 -------AGDKTRDWLIS--------------KKVDVKLGERVNLDSVSE-G-SD-TYLTS---------------TG--  204 (275)
Q Consensus       166 -------~~~~~~~~~~~--------------~gv~i~~~~~v~~i~~~~-~-~~-~v~~~---------------~g--  204 (275)
                             +.+.+.+.+++              +||++++++.+.+|..++ + .+ .+.+.               +|  
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~  317 (460)
T 1cjc_A          238 AARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDV  317 (460)
T ss_dssp             SCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCce
Confidence                   22344445555              789999999999997653 2 22 23332               34  


Q ss_pred             cEEeecEEEEcCCCCCCchhhccccccc-ccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          205 DTINADCHFLCTGKPVGSDWLKDTILKD-SLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       205 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++++||.||+++|++|+. +     .++ +++++|++.||+++|+.+.|+|||+|||+..|.
T Consensus       318 ~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~  373 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT  373 (460)
T ss_dssp             EEEECSEEEECCCEECCC-C-----CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT
T ss_pred             EEEEcCEEEECCCCCCCC-C-----CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC
Confidence            579999999999999976 3     234 567789999999999933799999999996553

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.91  E-value=6.2e-24  Score=181.99  Aligned_cols=230  Identities=17%  Similarity=0.244  Sum_probs=145.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCcccccccccccc---------------------------CCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRAMV---------------------------EPS   61 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~~~~~~~~~~~~~---------------------------~~~   61 (275)
                      ..+||+|||||++|+++|+.|+ .|.  +|+|||+++.+|+.|.......                           ...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            4589999999999999999998 588  9999999987775553321000                           000


Q ss_pred             c-------------------ccc--------ccccc-ccccc--ccEE-EEeeeeEeec--C--eEEecC---Ce---EE
Q 023957           62 F-------------------GKR--------SVINH-TDYLV--NGRI-VASPAINITE--N--EVLTAE---GR---RV  100 (275)
Q Consensus        62 ~-------------------~~~--------~~~~~-~~~~~--~~~~-~~~~~~~~~~--~--~v~~~~---~~---~~  100 (275)
                      +                   ...        .+..+ ..+..  +..+ ...++..++.  .  .+.+.+   +.   .+
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~  164 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  164 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEE
Confidence            0                   000        00000 00000  1112 2334444432  2  455543   55   78


Q ss_pred             eCCEEEEccCC--CCCCCchHH-HHHH-----------HHh------c-------CCcchhhHHHHHhhhCCCCE-EEEE
Q 023957          101 VYDYLVIATGH--KDPVPKTRT-ERLN-----------QYQ------A-------GGPTGVELAGEIAVDFPEKK-VTLV  152 (275)
Q Consensus       101 ~~~~lilatG~--~~~~~~~~~-~~l~-----------~~~------~-------~g~~~~~~a~~l~~~~~~~~-v~~~  152 (275)
                      .||+||+|||.  .|.+|.++. +.+.           .+.      .       +|.+|+|+|..+.  ..+.+ ++++
T Consensus       165 ~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~--~~~~~~V~l~  242 (447)
T 2gv8_A          165 IFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT--PVAKHPIYQS  242 (447)
T ss_dssp             EESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHT--TTSCSSEEEE
T ss_pred             EeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHH--HHhCCcEEEE
Confidence            99999999998  565554321 1110           010      0       8899999999998  55777 9999


Q ss_pred             eCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcE-EeecEEEEcCCCCCCchh-----hc
Q 023957          153 HKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT-INADCHFLCTGKPVGSDW-----LK  226 (275)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~-----~~  226 (275)
                      .+.+.+               ++..||++  +..|+++..++  ..|++.||+. +++|.||+|+|++|+.++     +.
T Consensus       243 ~r~~~~---------------l~~~~i~~--~~~v~~~~~~~--~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~  303 (447)
T 2gv8_A          243 LLGGGD---------------IQNESLQQ--VPEITKFDPTT--REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLK  303 (447)
T ss_dssp             CTTCCS---------------CBCSSEEE--ECCEEEEETTT--TEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCC
T ss_pred             eCCCCc---------------CCCCCeEE--ecCeEEEecCC--CEEEECCCCEeccCCEEEECCCCCcCCCCCcccccc
Confidence            987654               23456664  56788885433  3678889986 789999999999999888     66


Q ss_pred             ccccccccCCCCceEeCCCccc--cCCCCeEEeccccCCC
Q 023957          227 DTILKDSLDTHGMLMVDENLRV--KGQKNIFAIGDITDIR  264 (275)
Q Consensus       227 ~~~~~~~~~~~g~i~v~~~~~~--~~~~~v~a~Gd~~~~~  264 (275)
                      ..+..+  ..++.+.++.+.++  ++.|++|++||+....
T Consensus       304 ~~~~~i--~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~  341 (447)
T 2gv8_A          304 SPETKL--IDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV  341 (447)
T ss_dssp             STTTCC--CSSSSSCCSEETTTEETTCTTEEESSCCBSSC
T ss_pred             cccCce--ecCCCcccccccccccCCCCcEEEEecccccc
Confidence            543222  23455555544331  3899999999997653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.89  E-value=6.2e-23  Score=178.88  Aligned_cols=242  Identities=16%  Similarity=0.167  Sum_probs=150.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcccccccc--ccc---c-----CCcccc---------------c
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASL--RAM---V-----EPSFGK---------------R   65 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~~~~--~~~---~-----~~~~~~---------------~   65 (275)
                      ++||+|||||++|+++|+.|+ + |.+|+|||+++.+|+.|...  ++.   .     ...+..               .
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            479999999999999999998 4 99999999998887554321  110   0     000000               0


Q ss_pred             ccccc-ccccc--cc--EE-EEeeeeEee--cC----eEEecCCeEEeCCEEEEccC--CCCCCCchHHHHHHHHhc---
Q 023957           66 SVINH-TDYLV--NG--RI-VASPAINIT--EN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRTERLNQYQA---  128 (275)
Q Consensus        66 ~~~~~-~~~~~--~~--~~-~~~~~~~~~--~~----~v~~~~~~~~~~~~lilatG--~~~~~~~~~~~~l~~~~~---  128 (275)
                      .+..+ .....  ++  .+ ...++..++  ..    .+.+.+|..+.||.||+|||  +.|..|.++  +++.+..   
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip--G~~~f~g~~~  165 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLP--GLDTFEGETI  165 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCT--TGGGCCSEEE
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCC--CccccCCCEE
Confidence            00000 00000  11  22 123333332  22    67788888899999999999  456655432  1121110   


Q ss_pred             --------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc-cCcCCcchHHHHHHHHH------------
Q 023957          129 --------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLI------------  175 (275)
Q Consensus       129 --------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~------------  175 (275)
                                          +|.+|+|+|..+.  ..+.+++++++.+.+ ++..++.+.+.+.+.++            
T Consensus       166 ~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~--~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  243 (540)
T 3gwf_A          166 HTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLA--PEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKN  243 (540)
T ss_dssp             EGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHT--TTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHT
T ss_pred             EeecCCCccccccceEEEECCCchHHHHHHHHH--hhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHh
Confidence                                8899999999998  568999999999873 34333332222211111            


Q ss_pred             --------------------------------------------------------------------------------
Q 023957          176 --------------------------------------------------------------------------------  175 (275)
Q Consensus       176 --------------------------------------------------------------------------------  175 (275)
                                                                                                      
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~  323 (540)
T 3gwf_A          244 SAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK  323 (540)
T ss_dssp             SSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC
T ss_pred             ccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC
Confidence                                                                                            


Q ss_pred             ------------------hCCCEEEc--CceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhccccc----c
Q 023957          176 ------------------SKKVDVKL--GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL----K  231 (275)
Q Consensus       176 ------------------~~gv~i~~--~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~----~  231 (275)
                                        +.+|+++.  ...|.+|..+    .|++.||+++++|.||+|||+.++..++....+    +
T Consensus       324 ~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G  399 (540)
T 3gwf_A          324 GLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK----GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDG  399 (540)
T ss_dssp             SCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS----EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGG
T ss_pred             CCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC----eEEcCCCCEEECCEEEECCccCccccCcCcceEECCCC
Confidence                              34778875  6788888753    488999999999999999999987644433221    1


Q ss_pred             cccCC--CCceEeCCCccccCCCCeEEe-ccccC
Q 023957          232 DSLDT--HGMLMVDENLRVKGQKNIFAI-GDITD  262 (275)
Q Consensus       232 ~~~~~--~g~i~v~~~~~~~~~~~v~a~-Gd~~~  262 (275)
                      ..+++  .+.+.....+.+++.||+|.+ |..+.
T Consensus       400 ~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~  433 (540)
T 3gwf_A          400 LHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP  433 (540)
T ss_dssp             CBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB
T ss_pred             cCHHHhhccChhhccccccCCCCceEEEecCCCC
Confidence            11111  122334444666789999999 87654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.89  E-value=4.2e-23  Score=184.93  Aligned_cols=223  Identities=15%  Similarity=0.179  Sum_probs=144.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (275)
                      ..++||+|||||+||++||..|+ +|++|+|||+++.+|+.+....................+.+  .++++..+..+. 
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-  449 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT-  449 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC-
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec-
Confidence            34689999999999999999998 69999999999888765432111111000000011111111  134444332211 


Q ss_pred             ecCeEEecCCeEE-eCCEEEEccCCCCCCCchHH----------HHHHHHh--c-------CCcchhhHHHHHhhhC---
Q 023957           88 TENEVLTAEGRRV-VYDYLVIATGHKDPVPKTRT----------ERLNQYQ--A-------GGPTGVELAGEIAVDF---  144 (275)
Q Consensus        88 ~~~~v~~~~~~~~-~~~~lilatG~~~~~~~~~~----------~~l~~~~--~-------~g~~~~~~a~~l~~~~---  144 (275)
                               ...+ .||+||+|||+.|..|.++.          +.+....  .       +|.+|+|+|..+....   
T Consensus       450 ---------~~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~v  520 (671)
T 1ps9_A          450 ---------ADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGEST  520 (671)
T ss_dssp             ---------SSSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ---------HHHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCc
Confidence                     1124 89999999999866553221          1111100  0       7889999999987321   


Q ss_pred             --------------------------------CCCEEEEEeCCCccc-CcCCcchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957          145 --------------------------------PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  191 (275)
Q Consensus       145 --------------------------------~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  191 (275)
                                                      ...+++++.+.+..+ ..+++.....+.+.+++.||++++++.|++++
T Consensus       521 tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  600 (671)
T 1ps9_A          521 SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID  600 (671)
T ss_dssp             GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE
T ss_pred             ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe
Confidence                                            014567777765443 34555666777888999999999999999997


Q ss_pred             CCCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957          192 VSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       192 ~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .+  .+.+. .+|  +++++|.||+|+|++|+..++....                  . ..++||++|||+....
T Consensus       601 ~~--~v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~------------------~-~g~~v~aiGD~~~~~~  654 (671)
T 1ps9_A          601 DD--GLHVV-INGETQVLAVDNVVICAGQEPNRALAQPLI------------------D-SGKTVHLIGGCDVAME  654 (671)
T ss_dssp             TT--EEEEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH------------------T-TTCCEEECGGGTCCSS
T ss_pred             CC--eEEEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH------------------h-cCCCEEEECCcCccCc
Confidence            42  33343 567  5799999999999999887765321                  1 2468999999988764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.86  E-value=5.7e-21  Score=143.65  Aligned_cols=93  Identities=18%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE  244 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~  244 (275)
                      .+.+.+.+.+++.|++++.+ +|++++.+++.+.+.+++| ++++|.||+|+|..|+  +++..++  +++ +|++.||+
T Consensus        57 ~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~--~~~-~g~i~vd~  129 (180)
T 2ywl_A           57 ELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT--LPSLLGL--TRR-GAYIDTDE  129 (180)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH--HHHHHTC--CEE-TTEECCCT
T ss_pred             HHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC--ccccCCC--Ccc-CceEEeCC
Confidence            46677778888899999999 9999987766777888888 7999999999999974  4444444  566 89999999


Q ss_pred             CccccCCCCeEEeccccCCCC
Q 023957          245 NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       245 ~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +++| +.|+|||+|||+..+.
T Consensus       130 ~~~t-~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A          130 GGRT-SYPRVYAAGVARGKVP  149 (180)
T ss_dssp             TCBC-SSTTEEECGGGGTCCS
T ss_pred             CCCc-CCCCEEEeecccCcch
Confidence            9999 8999999999998765

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.85  E-value=3.7e-21  Score=167.88  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc--ccccc------------CCc----cc-cccccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--LRAMV------------EPS----FG-KRSVIN--   69 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~--~~~~~------------~~~----~~-~~~~~~--   69 (275)
                      .++||+|||||++|+++|+.|+ .|.+|+|||+++.+|+.|..  .++..            .+.    .. ......  
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            4589999999999999999998 69999999999888765521  11000            000    00 000000  


Q ss_pred             -ccccc----c--cc--EE-EEeeeeEe--ecC----eEEecCCeEEeCCEEEEccC--CCCCCCchHH-HH--------
Q 023957           70 -HTDYL----V--NG--RI-VASPAINI--TEN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRT-ER--------  122 (275)
Q Consensus        70 -~~~~~----~--~~--~~-~~~~~~~~--~~~----~v~~~~~~~~~~~~lilatG--~~~~~~~~~~-~~--------  122 (275)
                       ...++    .  ++  .+ ...++..+  +..    .+.+.+|.++.||.||+|||  +.|..|.++. +.        
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~  167 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHS  167 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEc
Confidence             00000    0  11  11 12233333  222    77888888999999999999  6655444321 00        


Q ss_pred             --H-HH-------H--hc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc
Q 023957          123 --L-NQ-------Y--QA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL  158 (275)
Q Consensus       123 --l-~~-------~--~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  158 (275)
                        . ..       .  ..       +|.+|+|++..+.  ..+.+++++++.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la--~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          168 SRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAA--ETAKELYVFQRTPNW  220 (545)
T ss_dssp             GGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHT--TTBSEEEEEESSCCC
T ss_pred             ccccccccccccccccCCCeEEEECCCccHHHHHHHHH--hhCCEEEEEEcCCCc
Confidence              0 00       1  11       8899999999998  568999999998874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.83  E-value=2.1e-20  Score=163.28  Aligned_cols=143  Identities=22%  Similarity=0.322  Sum_probs=90.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc--ccc---cC-----Ccccc---------ccccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--RAM---VE-----PSFGK---------RSVIN--   69 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~--~~~---~~-----~~~~~---------~~~~~--   69 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||+++.+|+.|...  ++.   ..     ..+..         .....  
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~   99 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP   99 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence            4589999999999999999998 699999999998887655311  111   00     00000         00000  


Q ss_pred             -ccccc----c--cc--EE-EEeeeeEe--ecC----eEEecCCeEEeCCEEEEccC--CCCCCCchHHHHHHHH-----
Q 023957           70 -HTDYL----V--NG--RI-VASPAINI--TEN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRTERLNQY-----  126 (275)
Q Consensus        70 -~~~~~----~--~~--~~-~~~~~~~~--~~~----~v~~~~~~~~~~~~lilatG--~~~~~~~~~~~~l~~~-----  126 (275)
                       ..+++    .  ++  .+ ...++..+  +..    .+.+.+|.++.||.||+|||  +.|..|.++  +++.+     
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip--G~~~f~g~~~  177 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFD--GLDRFTGDIV  177 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCT--TGGGCCSEEE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCC--CcccCCCceE
Confidence             00000    0  11  12 12233333  233    67788888899999999999  555555432  11111     


Q ss_pred             ------------hc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc
Q 023957          127 ------------QA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL  158 (275)
Q Consensus       127 ------------~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  158 (275)
                                  ..       +|.+|+|+|..+..  .+.+++++++.+.+
T Consensus       178 ~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          178 HTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAE--QAEQLFVFQRSANY  226 (549)
T ss_dssp             EGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSCCC
T ss_pred             EeccccccccccCCCEEEEECCCchHHHHHHHHHh--hCCEEEEEECCCCc
Confidence                        00       88999999999984  57899999998874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.81  E-value=1e-19  Score=159.26  Aligned_cols=145  Identities=19%  Similarity=0.355  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc--cccc---cC-----Ccccc---------ccccc--
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--LRAM---VE-----PSFGK---------RSVIN--   69 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~--~~~~---~~-----~~~~~---------~~~~~--   69 (275)
                      .++||+|||||++|+++|+.|+ .|++|+|||+++.+|+.|..  .++.   ..     ..+..         .....  
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            3589999999999999999998 69999999999888765521  1110   00     00000         00000  


Q ss_pred             -cccc-------cc-ccEEE-EeeeeEee--cC----eEEecCCeEEeCCEEEEccCC--CCCCCchHH-HH-----H--
Q 023957           70 -HTDY-------LV-NGRIV-ASPAINIT--EN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-ER-----L--  123 (275)
Q Consensus        70 -~~~~-------~~-~~~~~-~~~~~~~~--~~----~v~~~~~~~~~~~~lilatG~--~~~~~~~~~-~~-----l--  123 (275)
                       ..++       +. ...+. ..++..++  ..    .+.+.+|.++.+|.||+|+|.  .|..|.++. +.     +  
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs  174 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHT  174 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEC
Confidence             0000       00 11121 22333332  21    577778888999999999994  455544321 00     0  


Q ss_pred             HHHh-------c-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc
Q 023957          124 NQYQ-------A-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL  158 (275)
Q Consensus       124 ~~~~-------~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  158 (275)
                      ..+.       .       +|.+|++++..+..  .+.+++++.+.+.+
T Consensus       175 ~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~--~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          175 GNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRTPHF  221 (542)
T ss_dssp             GGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSCCC
T ss_pred             CCCCCchhccCCCEEEEECCCccHHHHHHHHhh--cCceEEEEEcCCcc
Confidence            0000       0       78889999999984  47899999988765

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.72  E-value=5.7e-16  Score=134.14  Aligned_cols=166  Identities=14%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             eEEeCCEEEEccCCCCCCCchH------------HHHHHHH-----hc-------CCcchhhHHHHHhhhCCCCEEEEEe
Q 023957           98 RRVVYDYLVIATGHKDPVPKTR------------TERLNQY-----QA-------GGPTGVELAGEIAVDFPEKKVTLVH  153 (275)
Q Consensus        98 ~~~~~~~lilatG~~~~~~~~~------------~~~l~~~-----~~-------~g~~~~~~a~~l~~~~~~~~v~~~~  153 (275)
                      .++.++.||+|||..|.+|...            ......+     ..       +|.+|++++..|.....+.+++++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            4678999999999988877532            1112211     11       8999999999998767789999999


Q ss_pred             CCCcccCc---------CCcchHHH-------------------------------HHHHH-----H-----hCCCEEEc
Q 023957          154 KGSRLLEF---------IGPKAGDK-------------------------------TRDWL-----I-----SKKVDVKL  183 (275)
Q Consensus       154 ~~~~~~~~---------~~~~~~~~-------------------------------~~~~~-----~-----~~gv~i~~  183 (275)
                      |.+.+.+.         +.++..+.                               +.+.+     .     .....+..
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            98765431         11111111                               11111     0     01124555


Q ss_pred             CceeeeecCCCC--C------------ceEEcCCCcEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeCCCccc
Q 023957          184 GERVNLDSVSEG--S------------DTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDENLRV  248 (275)
Q Consensus       184 ~~~v~~i~~~~~--~------------~~v~~~~g~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~~~~~~  248 (275)
                      +..+..+.....  .            ..+.+.+|+++++|.||+|||++++. .++....-.+..+.+|.+.|+++++.
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~  438 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRV  438 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBB
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEE
Confidence            555555543221  1            12445788899999999999998864 33332222335567788899988764


Q ss_pred             c-------CCCCeEEeccccCC
Q 023957          249 K-------GQKNIFAIGDITDI  263 (275)
Q Consensus       249 ~-------~~~~v~a~Gd~~~~  263 (275)
                      .       ..++||+.|-+-..
T Consensus       439 ~~~~~~~~~~~~i~~qg~~~~t  460 (501)
T 4b63_A          439 EMDPSKVSSEAGIWLQGCNERT  460 (501)
T ss_dssp             CCCTTTBCTTCEEEECSCCHHH
T ss_pred             eecCCccCCCceEEecCCCccc
Confidence            2       24679999966443

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.62  E-value=6.4e-17  Score=137.90  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC--------CCCCchhhcccccccccCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--------KPVGSDWLKDTILKDSLDT  236 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--------~~~~~~~~~~~~~~~~~~~  236 (275)
                      .+...+...+++.| +|+++++|++|+.+++.+.|.+.+|+++.||.||+|+|        +.|+.+......++. ...
T Consensus       205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~~~  282 (431)
T 3k7m_X          205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-GHG  282 (431)
T ss_dssp             CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-CCC
T ss_pred             cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-CCC
Confidence            45556666666677 99999999999988878888888998899999999999        777654433332221 223


Q ss_pred             CCceEeCCCccccCCCCeEEeccccC
Q 023957          237 HGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       237 ~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      ...++|+..+++ +.+++|+.||+..
T Consensus       283 ~~~~kv~~~~~~-~~~~i~~~~d~~~  307 (431)
T 3k7m_X          283 GQGLKILIHVRG-AEAGIECVGDGIF  307 (431)
T ss_dssp             CCEEEEEEEEES-CCTTEEEEBSSSS
T ss_pred             cceEEEEEEECC-CCcCceEcCCCCE
Confidence            345899999998 6899999999843

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.57  E-value=1.6e-15  Score=130.35  Aligned_cols=144  Identities=14%  Similarity=0.047  Sum_probs=84.3

Q ss_pred             eEEeCCEEEEccCCCCCCCc-------hHHHHHHHHhc--------------------CCcchhhHHHHHhhhCCCCEEE
Q 023957           98 RRVVYDYLVIATGHKDPVPK-------TRTERLNQYQA--------------------GGPTGVELAGEIAVDFPEKKVT  150 (275)
Q Consensus        98 ~~~~~~~lilatG~~~~~~~-------~~~~~l~~~~~--------------------~g~~~~~~a~~l~~~~~~~~v~  150 (275)
                      ..+.++.+|+|||..+..+.       ...+.+.-...                    ++. +++++..++  ..+..+ 
T Consensus       161 g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg-~~~~ae~~~--~~G~~~-  236 (472)
T 2e5v_A          161 LVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE-VFLLTETLR--GEGAQI-  236 (472)
T ss_dssp             EECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC-CEECCTHHH--HTTCEE-
T ss_pred             CeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC-ceeeehhhc--CCceEE-
Confidence            35779999999998743322       12222211100                    111 445555554  335555 


Q ss_pred             EEeCCCcccCcCCcch--------HHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe-ecEEEEcCCCCCC
Q 023957          151 LVHKGSRLLEFIGPKA--------GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKPVG  221 (275)
Q Consensus       151 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~~~  221 (275)
                      +...+.++++.+++..        ...+.+.+++.|. ++.+..  .+.   .     +.  +.++ .+.++++.|..|+
T Consensus       237 v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~--~~~---~-----~~--~~~~~~~~~~~~~G~dp~  303 (472)
T 2e5v_A          237 INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS--KIE---D-----FE--RKFPVVAKYLARHGHNYK  303 (472)
T ss_dssp             EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT--TCT---T-----HH--HHCHHHHHHHHHTTCCTT
T ss_pred             ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc--chH---H-----HH--HHhHHHHHHHHHhCcCcc
Confidence            6667777776554433        5566666666553 332221  111   0     00  1233 4677888899987


Q ss_pred             chhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          222 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                       .+++....  .+...|.|.||.++|| +.|+|||+|||+.
T Consensus       304 -~~i~v~p~--~~~~~GGI~vd~~~~t-~ipgLyAaGd~a~  340 (472)
T 2e5v_A          304 -VKIPIFPA--AHFVDGGIRVNIRGES-NIVNLYAIGEVSD  340 (472)
T ss_dssp             -SCEECEEE--EEEESCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred             -cceEeehh--hceeCCCeEECCCCcc-ccCCEEecchhcc
Confidence             55544322  1234689999999999 8999999999987

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.52  E-value=7.5e-14  Score=108.87  Aligned_cols=56  Identities=11%  Similarity=0.001  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++. |++++ +++|+++..+++.+ .+.+.+|+++++|.||+|+|..++
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4667788888887 99998 56899987665553 477788888999999999998554

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.51  E-value=1.2e-13  Score=116.78  Aligned_cols=57  Identities=14%  Similarity=0.066  Sum_probs=49.5

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ..+.+.+.+.+++.|++++.+++|+++..+++.+.+.+.+| ++.||.||+|+|..+.
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSI  188 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccC
Confidence            36778888888889999999999999987777777888888 7999999999998763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.41  E-value=1.2e-12  Score=108.85  Aligned_cols=64  Identities=6%  Similarity=-0.123  Sum_probs=51.7

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCC--cEEeecEEEEcCCCCCCchhhccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG--DTINADCHFLCTGKPVGSDWLKDT  228 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~  228 (275)
                      ..+.+.+.+.+++.|++++.+++|++++.+++. +.+.+.+|  .++.||.||+|+|... ..+++..
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s-~~l~~~~  216 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA-PGLARRI  216 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH-HHHHHTE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch-HHHHHHh
Confidence            357888888899999999999999999877654 67888887  4799999999999874 3444443

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.40  E-value=1.6e-13  Score=114.80  Aligned_cols=56  Identities=9%  Similarity=-0.082  Sum_probs=48.5

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.|.+.+| ++.||.||+|+|...
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            35778888889999999999999999988777777888877 799999999999764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.40  E-value=1.3e-12  Score=113.31  Aligned_cols=55  Identities=9%  Similarity=-0.075  Sum_probs=47.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.+++.|++|+++++|++|..+++++. |+++||+++.||.||++++..
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            4778888999999999999999999998777665 889999999999999988754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.36  E-value=7.7e-12  Score=104.70  Aligned_cols=62  Identities=10%  Similarity=-0.100  Sum_probs=50.4

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  227 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~  227 (275)
                      ..+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.+| ++.+|.||+|+|... ..++..
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s-~~l~~~  225 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQ  225 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH-HHHHHh
Confidence            35778888889999999999999999987777677777777 799999999999874 334443

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.35  E-value=2e-11  Score=102.39  Aligned_cols=77  Identities=19%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhc
Q 023957          147 KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  226 (275)
Q Consensus       147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  226 (275)
                      ....++.+....+.  ...+...+.+.+++.|++++.+++|++++.+++.+.+.+.+| ++.+|.||+|+|..+ ..++.
T Consensus       135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~  210 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLS  210 (389)
T ss_dssp             TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGG
T ss_pred             CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH-HHHhh
Confidence            44555555443332  236778888889999999999999999987766677777666 699999999999865 33443


Q ss_pred             c
Q 023957          227 D  227 (275)
Q Consensus       227 ~  227 (275)
                      .
T Consensus       211 ~  211 (389)
T 2gf3_A          211 K  211 (389)
T ss_dssp             G
T ss_pred             h
Confidence            3

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.35  E-value=9.9e-12  Score=104.05  Aligned_cols=55  Identities=11%  Similarity=-0.127  Sum_probs=46.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.+++.+. +.+.+| ++.||.||+|+|...
T Consensus       150 ~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          150 EATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            5677788888899999999999999987766665 777777 799999999999774

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.35  E-value=2.1e-12  Score=103.79  Aligned_cols=97  Identities=13%  Similarity=-0.011  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcC---------CC-----cEEeecEEEEcCCCCCCch-h---
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---------TG-----DTINADCHFLCTGKPVGSD-W---  224 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---------~g-----~~~~~d~vv~a~G~~~~~~-~---  224 (275)
                      .+...+.+.+.+ .|++++.+++|+++..+++.+ .+.+.         +|     .++++|.||+|+|..+... +   
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~  199 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK  199 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence            455566666665 699999999999998665543 33331         22     5799999999999766432 1   


Q ss_pred             -hcccccccccCCCCceEeCC-------CccccCCCCeEEeccccC
Q 023957          225 -LKDTILKDSLDTHGMLMVDE-------NLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       225 -~~~~~~~~~~~~~g~i~v~~-------~~~~~~~~~v~a~Gd~~~  262 (275)
                       +...++...+.+...+.++.       ..++ +.|++|++|+++.
T Consensus       200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~  244 (284)
T 1rp0_A          200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVA  244 (284)
T ss_dssp             HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHH
T ss_pred             HhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehh
Confidence             11111111222222333332       2233 5799999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.34  E-value=2.2e-11  Score=109.29  Aligned_cols=57  Identities=5%  Similarity=-0.006  Sum_probs=50.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|+++..+++.+.+.+.+|.++.+|.||+|+|...
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            357788888889999999999999999887777788888888899999999999764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.33  E-value=1.1e-11  Score=104.33  Aligned_cols=58  Identities=7%  Similarity=-0.095  Sum_probs=48.0

Q ss_pred             CcchHHHHHHHHHhCCCEEEcCceeeeecCC----CCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS----EGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~----~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ...+.+.+.+.+++.|++++.+++|+++..+    ++.+.+.+.+| ++.||.||+|+|..+.
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            3467788888888899999999999999855    45566777766 7999999999998874

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.33  E-value=9.1e-12  Score=106.46  Aligned_cols=57  Identities=14%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.+++.|++++.+++|+++..+++. +.+.+.+|+++.||.||+|+|..+
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            357788888888999999999999999865554 668888888899999999999876

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.33  E-value=1.1e-11  Score=105.63  Aligned_cols=56  Identities=21%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCc---eeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGE---RVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~---~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.++   +|+++..+++.+. |.+.+|+++.||.||+|+|...
T Consensus       162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            577888888999999999999   9999987666666 8888998899999999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.31  E-value=6.2e-11  Score=106.60  Aligned_cols=57  Identities=5%  Similarity=-0.045  Sum_probs=49.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc-EEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|+++..+++.+.+.+.+|. ++.+|.||+|+|...
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            357888888889999999999999999987777788888886 799999999999764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.30  E-value=1.1e-11  Score=107.96  Aligned_cols=50  Identities=12%  Similarity=-0.076  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .....+..|++|+++++|++|+.+++.+.+.+.+|+++.||.||++++..
T Consensus       218 ~~~l~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          218 SERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHH
Confidence            33334445889999999999988877788888899899999999998864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.30  E-value=3.8e-12  Score=110.54  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=49.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ..+.+.+.+.+++.|++++.+++|+++..+++.+ .+.+.+|+++.||.||+|+|..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4577778888888999999999999998776654 488889999999999999999874

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.30  E-value=2.3e-11  Score=102.42  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.+| ++.||.||+|+|...
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence            4667788888889999999999999987666666766665 699999999999763

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.30  E-value=1.6e-11  Score=103.41  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCc--eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++. |++++.+++|++++.+++.+  .+.+.+|+++.+|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            5677788888887 99999999999998877777  788889989999999999998763

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.29  E-value=2.1e-12  Score=112.34  Aligned_cols=52  Identities=13%  Similarity=-0.042  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .+.+.+.+.+++.|+++.++++|++|..+++  .+++.+|+++.||.||++...
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTT--EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCC--EEEEcCCCEEECCEEEECCCH
Confidence            3566677777788999999999999987654  467889999999999999763

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.28  E-value=1.6e-11  Score=104.28  Aligned_cols=61  Identities=11%  Similarity=0.085  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCCCchhh
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWL  225 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~  225 (275)
                      ..+.+.+.+.+++.|++|+++++|++|..+++.+. +.+ +|+++.||.||+|+|......++
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhc
Confidence            35788889999999999999999999987766655 555 47789999999999865433343

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.28  E-value=1.7e-11  Score=104.01  Aligned_cols=60  Identities=13%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhh
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  225 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  225 (275)
                      ..+.+.+.+.+++.|++|+++++|++|..+++.+ + ..+|+++.||.||+|+|......++
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            4678889999999999999999999999877666 5 5577889999999999976544444

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.27  E-value=6.4e-11  Score=99.70  Aligned_cols=54  Identities=9%  Similarity=-0.097  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.+  .|++++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            444444443  589999999999998887788888999989999999999998653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.26  E-value=3.4e-11  Score=101.71  Aligned_cols=55  Identities=16%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++  ++++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence            466667777665  8999999999999888888899999999999999999997653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.24  E-value=2.1e-10  Score=95.59  Aligned_cols=55  Identities=16%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.+|+ +.+|.||+|+|...
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccH
Confidence            56778888888999999999999999877666777777775 99999999999754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.24  E-value=1.1e-10  Score=97.57  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++|++++. + . .+++.+|+++.+|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCCEEEcCEEEECCCccHH
Confidence            5677788888889999999999999987 3 3 788888989999999999998764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.22  E-value=3.5e-11  Score=102.03  Aligned_cols=56  Identities=18%  Similarity=0.049  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc--eEEcCCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD--TYLTSTGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~--~v~~~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++..  .+.+.+|+  ++.+|.||.|+|..+
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            466777777888899999999999998765543  45567887  799999999999764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.22  E-value=3.8e-11  Score=101.26  Aligned_cols=55  Identities=16%  Similarity=-0.067  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+++. ..+.+.+| ++.+|.||+|+|...
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            56777888889999999999999999876554 45777777 699999999999764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.20  E-value=5e-11  Score=102.42  Aligned_cols=40  Identities=23%  Similarity=0.191  Sum_probs=36.4

Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      ++|+++++|++|+.+++.+.|.+.+|+++.||.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            7999999999999887788899999988999999999874

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.20  E-value=1.2e-10  Score=100.30  Aligned_cols=54  Identities=17%  Similarity=0.041  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.+++.|++|+++++|++|+.+++. +.|.+ ++.++.||.||+|++..
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence            57888899999999999999999999876655 66766 45579999999998753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.19  E-value=4.5e-11  Score=98.56  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             HHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          171 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       171 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      ....+..|++|+++++|++|+.+++.+.+.+.+|+.+.+|.||+|++.
T Consensus       116 ~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          116 KHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            333344489999999999999888888888888887899999999873

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.18  E-value=5.2e-11  Score=99.88  Aligned_cols=56  Identities=11%  Similarity=-0.053  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEc-CCC--cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLT-STG--DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~-~~g--~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+.+.|++++.++.++.+..+++.+. +.. .++  .++.+|.||.|.|..+
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            4566777778888999999999999877665543 222 233  3689999999999754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.18  E-value=1.1e-10  Score=102.45  Aligned_cols=56  Identities=11%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc--CCC-cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG-DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++|+.+++|+.++.+++.+.+.+  .+| +++.+|+||.|.|...
T Consensus       149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            4677788888888999999999999998888877777  678 6899999999999875

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.17  E-value=1.3e-10  Score=102.32  Aligned_cols=56  Identities=16%  Similarity=0.025  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCceEEcC-CC--cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTS-TG--DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~-~g--~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+ ++.+.+.+. +|  .++.||.||.|+|..+
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            46777888888899999999999999875 445667776 67  5799999999999865

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.16  E-value=2.1e-10  Score=100.31  Aligned_cols=56  Identities=11%  Similarity=-0.050  Sum_probs=48.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCC----CceEEcCCC---cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG----SDTYLTSTG---DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~----~~~v~~~~g---~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++    .+.+.+.++   .++.||.||.|.|...
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            5677788888889999999999999998777    677777766   6899999999999875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.16  E-value=8.2e-11  Score=100.75  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcC---CCc--EEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTS---TGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~---~g~--~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+++.+. +.+.   +|+  ++.||.||.|+|..+.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            4667778888889999999999999987665543 4443   675  7999999999997653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.15  E-value=2.8e-10  Score=98.53  Aligned_cols=56  Identities=11%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc---EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.+++   ++.+|+||.|.|...
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            46777888888889999999999999988877788877764   799999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.14  E-value=1.5e-10  Score=106.26  Aligned_cols=55  Identities=24%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|++++.+++.+ .+.+.+| ++.||.||+|+|...
T Consensus       152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            577888889999999999999999998766554 4667777 699999999999875

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.13  E-value=2.6e-10  Score=97.59  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      .++||+|||||++||+||++|+ .|++|+|+|+++.+|+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            3579999999999999999998 699999999999887553

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.11  E-value=8.9e-10  Score=93.88  Aligned_cols=56  Identities=9%  Similarity=-0.107  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecC-CCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGS-DTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~-~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ..+.+.+.+.+++.|++|+++++|++|.. +++. ..|++.+|+++.||.||+++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            36888999999999999999999999986 4443 45888889899999999999988

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.11  E-value=5.4e-11  Score=101.75  Aligned_cols=61  Identities=20%  Similarity=0.114  Sum_probs=47.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecC---------------CCCCc-eEEcCCCcEE--eecEEEEcCCCCCCchhhc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSV---------------SEGSD-TYLTSTGDTI--NADCHFLCTGKPVGSDWLK  226 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~---------------~~~~~-~v~~~~g~~~--~~d~vv~a~G~~~~~~~~~  226 (275)
                      .+...+.+.+++.|++++.+++|++++.               +++.+ .+.+.+| ++  .||.||+|+|... ..++.
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s-~~l~~  259 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS-NRLLN  259 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH-HHHHG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH-HHHHH
Confidence            6788888889999999999999999976               44443 4677777 58  9999999999764 33444


Q ss_pred             c
Q 023957          227 D  227 (275)
Q Consensus       227 ~  227 (275)
                      .
T Consensus       260 ~  260 (448)
T 3axb_A          260 P  260 (448)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.11  E-value=3e-10  Score=95.48  Aligned_cols=57  Identities=7%  Similarity=-0.119  Sum_probs=46.1

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCC-CCceEEc-CCCc--EEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLT-STGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~-~~g~--~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+.+.|++++.+++|++++.++ +.+.+.+ .+|+  ++.+|.||.|.|..+.
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            456667777777899999999999998753 4567776 6887  7999999999998754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.10  E-value=3.1e-10  Score=95.73  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceee---------eecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVN---------LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~---------~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|+         ++..+++.+.+.+.+| ++.||.||+|+|...
T Consensus       173 ~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          173 SLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            578888888999999999999999         8887666666666666 799999999999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.09  E-value=3.8e-10  Score=95.01  Aligned_cols=54  Identities=13%  Similarity=-0.036  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.++  +++++.+++|++++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus       130 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          130 LRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             HHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             HHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            4444444433  36889999999998877778888889988999999999997653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.09  E-value=3.6e-10  Score=97.83  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc---EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+++.+++   ++.+|+||.|.|...
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            46777888888889999999999999988777778777764   799999999999875

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.09  E-value=4.4e-10  Score=97.70  Aligned_cols=56  Identities=18%  Similarity=0.041  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC---ceEEcCCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+++.   +.+...+|+  ++.+|.||.|+|...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            46777888888899999999999999876664   334556674  799999999999864

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.08  E-value=2.5e-10  Score=100.29  Aligned_cols=140  Identities=16%  Similarity=0.183  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC-Ccccccc-----c------------cccc---------cC----
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWA-----S------------LRAM---------VE----   59 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~-~~~~~~~-----~------------~~~~---------~~----   59 (275)
                      ..+||+|||||+||++||+.|+ .|.+|+|||++. .++....     .            +.+.         ..    
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            3589999999999999999998 699999999974 2221000     0            0000         00    


Q ss_pred             -----Cccc-------cccc----ccccccccccEEEEeeeeEee--cC---eEEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           60 -----PSFG-------KRSV----INHTDYLVNGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        60 -----~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                           +...       ...+    .....-..+++++...+..+.  ..   .+.+.+|..+.++.||+|||..+..+..
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence                 0000       0000    000001136777777777773  22   4566778889999999999998554322


Q ss_pred             HH-HHHHHHhcCCcchhhHHHHHhhhCCCCEEEEEe
Q 023957          119 RT-ERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVH  153 (275)
Q Consensus       119 ~~-~~l~~~~~~g~~~~~~a~~l~~~~~~~~v~~~~  153 (275)
                      .. .....-..|+.++.+++..+.  ..|.+++.+.
T Consensus       187 ~G~~~~~~griGg~~a~eLA~~L~--~lG~~v~~~~  220 (651)
T 3ces_A          187 IGLDNYSGGRAGDPPSIPLSRRLR--ELPLRVGRLK  220 (651)
T ss_dssp             CC-------------CCHHHHHHH--TTTCCEEEEC
T ss_pred             cCcccCCCCCccchhhhHHHHHHH--hcCCeEEEec
Confidence            10 000000115677889998887  4577777664

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.07  E-value=7.6e-10  Score=95.72  Aligned_cols=58  Identities=7%  Similarity=-0.075  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC---CCCceEEc--C-CC--cEEeecEEEEcCCCCCCc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLT--S-TG--DTINADCHFLCTGKPVGS  222 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~---~~~~~v~~--~-~g--~~~~~d~vv~a~G~~~~~  222 (275)
                      .+.+.+.+.+++.|++++.+++|++++.+   ++.+.+.+  . +|  .++.+|.||+|+|..+..
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            56677788888899999999999999864   34556665  4 66  469999999999987654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.04  E-value=7.1e-10  Score=97.64  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEcC--CCc--EEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS--TGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~--~g~--~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.+++.|++++++++|+++..++ +.+ .++..  +|+  ++.+|.||+|+|...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            3567778888889999999999999998655 433 24433  675  689999999999654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.03  E-value=2.9e-09  Score=92.52  Aligned_cols=56  Identities=16%  Similarity=0.060  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEEcC-CCc--EEeec-EEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYLTS-TGD--TINAD-CHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~-~g~--~~~~d-~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++|+++++|+++..+ ++.+ .|... +++  ++.|| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            57788888888999999999999999876 3433 34443 343  58996 9999999654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.03  E-value=2.1e-10  Score=91.48  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ++||+|||||||||+||+.|+ .|++|+||||++.+|+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~   40 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGR   40 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            479999999999999999998 69999999999987743

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.03  E-value=1.3e-09  Score=95.59  Aligned_cols=57  Identities=12%  Similarity=-0.040  Sum_probs=45.0

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC---C--cEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|+++..+++.+ .+.+.+   |  ..+.||.||+|+|...
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3577778888889999999999999998766653 355442   3  4799999999999764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.02  E-value=1e-09  Score=92.67  Aligned_cols=56  Identities=13%  Similarity=0.027  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHh-CC-CEEEcCceeeeecCCCCCceEEcCC---C--cEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++ .| ++++.+++|++++. ++.+.+.+.+   |  +++.+|.||.|.|..+.
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            466677777765 36 68999999999987 6666777665   7  57999999999997653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.00  E-value=8.6e-10  Score=97.19  Aligned_cols=57  Identities=16%  Similarity=0.003  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cce-EEcC------CC---------cEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDT-YLTS------TG---------DTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-v~~~------~g---------~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++|+.++.|+++..+++ .+. |.+.      +|         .++.+|.||.|.|..+.
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            5677788888889999999999999987653 333 6554      33         67999999999998753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.00  E-value=3.1e-10  Score=99.82  Aligned_cols=56  Identities=23%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc--CCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++++++|+++..++ +.+ .+++  .+|+  .+.+|.||+|+|-..
T Consensus       251 ~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          251 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            467778888888999999999999998665 443 3444  3675  689999999999654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.99  E-value=5.6e-09  Score=90.50  Aligned_cols=56  Identities=18%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc---CCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.+++|+++..+++.+.+.+   .+|+  ++.+|.||+|+|...
T Consensus       150 ~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          150 RLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            5677788888899999999999999987665555665   3565  799999999999874

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.98  E-value=2.1e-09  Score=93.00  Aligned_cols=55  Identities=7%  Similarity=-0.073  Sum_probs=48.1

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+.+.+.+.+++.| ++|+++++|++|+..++.+.|.+.+|+++.||.||+|+|..
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            56777888888888 99999999999987777788888888889999999999964

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.97  E-value=5.8e-09  Score=87.88  Aligned_cols=44  Identities=11%  Similarity=0.022  Sum_probs=36.9

Q ss_pred             CCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCCC
Q 023957          177 KKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       177 ~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+..++.++++++++..++ .+.++++||+++++|+||-|-|...
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS  166 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence            4567889999999986544 5779999999999999999999764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.97  E-value=3e-09  Score=93.62  Aligned_cols=56  Identities=20%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEcC--CCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS--TGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~--~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++++++|+++..++ +.+ .+...  +|+  .+.+|.||+|+|-.+
T Consensus       256 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          256 HVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            467778888889999999999999997555 433 34443  664  689999999999655

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.95  E-value=3.3e-10  Score=100.42  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             CCCEEEcCceeeeecCCCC--C-ceEEcC---CCc--EEeecEEEEcCCCCCCchhhcccccccccCC
Q 023957          177 KKVDVKLGERVNLDSVSEG--S-DTYLTS---TGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDT  236 (275)
Q Consensus       177 ~gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~  236 (275)
                      .|+++++++.|++|..+++  . ..|++.   +|+  ++.+|.||+|+|..+++.++..++++...+.
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l  340 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRP  340 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCSSC
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccccc
Confidence            4899999999999976542  2 334443   454  7899999999999999989888877654433

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.95  E-value=2.6e-09  Score=93.59  Aligned_cols=55  Identities=24%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++. |++++.+ +|++++.+++.  ..+.+.+|+++.+|.||.|+|..+
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            4777788888888 9999999 99999765443  457788888899999999999765

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.95  E-value=3.6e-09  Score=89.96  Aligned_cols=57  Identities=9%  Similarity=-0.097  Sum_probs=47.6

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.+++.|++|+++++|++|..+++.+..+..+|+++.||.||+++|..+
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            367888888888899999999999999876666553445788899999999999876

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.94  E-value=4.4e-09  Score=91.99  Aligned_cols=56  Identities=21%  Similarity=0.313  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+ +|+++..+++.  ..+.+.+|+++.+|.||.|+|....
T Consensus       166 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          166 LVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            56777888888899999999 89999765443  4577888888999999999998653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.93  E-value=7.3e-09  Score=90.97  Aligned_cols=56  Identities=18%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+...+.+.+++. |++++. ..|+.+..+++.+. |.+.+|+.+.||.||+|+|..++
T Consensus       118 ~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             HHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            4567777888874 999965 58888876555554 77888889999999999998754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.93  E-value=7.5e-10  Score=96.89  Aligned_cols=135  Identities=18%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC-Ccccccc----------cc-------ccc---------cC----
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWA----------SL-------RAM---------VE----   59 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~-~~~~~~~----------~~-------~~~---------~~----   59 (275)
                      ..+||+|||||+||++||+.|+ .|.+|+|||++. .++....          .+       .+.         ..    
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l  105 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML  105 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence            3589999999999999999998 699999999974 2221000          00       000         00    


Q ss_pred             -----Ccccc-------ccc----ccccccccccEEEEeeeeEee--cC---eEEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           60 -----PSFGK-------RSV----INHTDYLVNGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        60 -----~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                           +....       ..+    .....-..+++++...+.++.  ..   .+.+.+|..+.++.+|+|||..+..+..
T Consensus       106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEE
T ss_pred             ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCcee
Confidence                 00000       000    000011136777777777764  22   3667788889999999999988554332


Q ss_pred             HHHHHHHHh---cCCcchhhHHHHHhhhCCCCEEE
Q 023957          119 RTERLNQYQ---AGGPTGVELAGEIAVDFPEKKVT  150 (275)
Q Consensus       119 ~~~~l~~~~---~~g~~~~~~a~~l~~~~~~~~v~  150 (275)
                      .  +...+.   .|+.++.+++..|..  .|.++.
T Consensus       186 ~--G~~~~~~Gr~G~~~A~~la~~L~~--lG~~v~  216 (637)
T 2zxi_A          186 I--GDKMIPGGRLGEPRSEGLSDFYRR--FDFPLI  216 (637)
T ss_dssp             E--TTEEEECSBTTBCCBCTHHHHHHH--TTCCCE
T ss_pred             c--cceecCCCCCCchhHHHHHHHHHh--cCCceE
Confidence            1  000111   144567888887774  354443

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.93  E-value=7.9e-09  Score=88.96  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      .+|+++++|++|+.+++.+.|.+.+| ++.||.||+|++..
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~  288 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHP  288 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHH
Confidence            79999999999988777788888889 69999999998853

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.91  E-value=3.9e-09  Score=92.79  Aligned_cols=57  Identities=9%  Similarity=-0.152  Sum_probs=43.5

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcC---CCc--EEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~~d~vv~a~G~~~  220 (275)
                      ..+...+.+.+++.|++++.+++|+++..+++.+ .+.+.   +|+  ++.||.||+|+|...
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            3566777788888999999999999998766543 35432   333  799999999999764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.91  E-value=8.4e-09  Score=90.89  Aligned_cols=55  Identities=13%  Similarity=0.010  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEEc---CCCc--EEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYLT---STGD--TINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~---~~g~--~~~~d~vv~a~G~~  219 (275)
                      .+...+.+.+++.|++++.++.|+++..+ ++.+ .+..   .+|+  .+.++.||+|+|-.
T Consensus       144 ~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            46677788888899999999999999764 4433 3442   5665  68999999999964

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.89  E-value=4.3e-09  Score=91.84  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~   49 (275)
                      ...+||+|||||++||+||+.|++|.+|+|+||.+..+.
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~~g   44 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG   44 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC-
T ss_pred             CCCCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCCCC
Confidence            345899999999999999999977999999999987653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.86  E-value=8.3e-09  Score=89.67  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++.+ +|++++.+++.  ..+.+.+|+++.+|.||.|+|...
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            46777888888899999999 89999865444  557788888899999999999864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.85  E-value=4.2e-09  Score=93.74  Aligned_cols=55  Identities=15%  Similarity=0.026  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  219 (275)
                      .+...+.+.+++.|++++.++.|.++..+++.+ .+.   +.+|+  .+.++.||+|+|-.
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            456677777778899999999999997654432 333   25675  58999999999954

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.85  E-value=2.8e-08  Score=87.07  Aligned_cols=52  Identities=10%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC---C--cEEeecEEEEcCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPV  220 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~  220 (275)
                      +.+.+.+.+++.   ++.+++|++++.+++.+.+++.+   |  .++.||.||.|.|...
T Consensus       140 l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          140 LAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASS  196 (549)
T ss_dssp             HHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence            455666666655   88999999998887777776654   6  4799999999999875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.82  E-value=2.8e-08  Score=88.57  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHhCCC--EEEcCceeeeecCCCC----CceEEcC------CC--cEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKV--DVKLGERVNLDSVSEG----SDTYLTS------TG--DTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~----~~~v~~~------~g--~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|+  +++.+++|++++.+++    .+.+.+.      +|  +++.+|.||.|.|...
T Consensus       142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence            466778888888876  9999999999987652    4556554      46  4799999999999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.81  E-value=9.2e-09  Score=90.93  Aligned_cols=56  Identities=9%  Similarity=-0.064  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc---CCCc--EEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++.++.|.++..+++.+ .+..   .+|+  .+.++.||+|+|-..
T Consensus       156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          156 SLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            466677777788899999999999997655433 3433   4665  689999999999643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.79  E-value=8.6e-09  Score=91.03  Aligned_cols=55  Identities=15%  Similarity=0.014  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCc-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  219 (275)
                      .+...+.+.+++.| ++++.++.|+++..+++.+ .+.   +.+|+  .+.++.||+|+|-.
T Consensus       135 ~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            46667777777788 9999999999997665532 232   36776  78999999999964

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.79  E-value=2.3e-08  Score=90.44  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          177 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       177 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .|++|+++++|++|+.+++.+.|.+.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            489999999999999888888899999989999999999863

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.77  E-value=1.2e-08  Score=88.94  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHh-CCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++ .|++++.+ .|++++.+++.  ..+.+.+|+++.+|.||.|+|..+
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            467778888888 89999999 59999765443  356777877899999999999865

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.74  E-value=5.5e-08  Score=78.73  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~   48 (275)
                      ..+||+|||||++|+++|+.|+ .  |++|+|+|+++..+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            3469999999999999999997 5  99999999988765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.71  E-value=8.9e-09  Score=84.24  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~   50 (275)
                      ..+||+|||||||||+||++|+   .|++|+||||++.+|+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~  105 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCce
Confidence            3579999999999999999995   39999999999887743

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.62  E-value=2.7e-08  Score=82.52  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ||.+++||+|||||++|+++|++|+ +|.+|+|+|++..
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            4456789999999999999999998 6999999999764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.61  E-value=3.6e-08  Score=84.28  Aligned_cols=55  Identities=9%  Similarity=-0.198  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC--CCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++++++++|++|..+  ++.+ .|.+ +|+++.||.||+++|..+
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc
Confidence            68888999999999999999999999876  5444 3554 578899999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.60  E-value=3.8e-08  Score=82.74  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWA   52 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~~   52 (275)
                      ..++||+|||||++||+||+.|+ . |++|+|+|+++.+|+...
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~   48 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY   48 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            34689999999999999999998 6 999999999999886543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.58  E-value=5e-08  Score=80.85  Aligned_cols=42  Identities=26%  Similarity=0.488  Sum_probs=36.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-CCcccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-EYFEITWA   52 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~-~~~~~~~~   52 (275)
                      ...+||+|||||++||+||+.|+ .|++|+|+|++ +.+|+.+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCcee
Confidence            44689999999999999999998 69999999999 88876544

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.57  E-value=2.8e-08  Score=86.45  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~~~~~~   51 (275)
                      .+||+|||||++||+||+.|+ .| ++|+|+|+++.+|+..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            479999999999999999998 68 9999999999988653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.56  E-value=6.1e-08  Score=80.95  Aligned_cols=42  Identities=24%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~   52 (275)
                      ...+||+|||||++|+++|++|+ .|.+|+|+|+++.+|+.+.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence            34689999999999999999998 6999999999998886544

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.56  E-value=5.6e-08  Score=82.36  Aligned_cols=53  Identities=9%  Similarity=-0.031  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      +........+..+.+++++++|++|+.+++.+.|.+.+|+ +.||.||++++..
T Consensus       205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            4444444455566788999999999887777778888876 8999999999853

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.51  E-value=9.5e-08  Score=82.52  Aligned_cols=41  Identities=32%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ....+||+|||||++||+||+.|+ .|++|+|+|+++..|+.
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR   49 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            344689999999999999999998 69999999999988864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.51  E-value=8.1e-08  Score=83.26  Aligned_cols=40  Identities=33%  Similarity=0.420  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..++||+|||||++||+||+.|+ .|++|+|+|+++.+|+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~   51 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK   51 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence            34589999999999999999998 69999999999988754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.51  E-value=5.4e-08  Score=82.67  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++||+||||||+|+++|+.|+ .|++|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            5589999999999999999998 699999999987

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.46  E-value=1.5e-07  Score=81.12  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCccccccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITWAS   53 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~~~~~~~~   53 (275)
                      +.+++||+|||||++||++|++|+ .| .+|+|+|+++.+|+.+..
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            345689999999999999999998 57 799999999988865543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.44  E-value=1.4e-07  Score=81.27  Aligned_cols=51  Identities=14%  Similarity=0.057  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc---CCCcEEeecEEEEcCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKP  219 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~  219 (275)
                      +.+.+.+.+   |.+|+++++|++|+.+++.+.|.+   .+|+++.||.||+|++..
T Consensus       240 l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          240 LIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence            444454444   679999999999988777777887   678889999999999854

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.42  E-value=2e-07  Score=77.38  Aligned_cols=38  Identities=18%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      +||+|||||++|+++|++|+ .|++|+|+|+++.+|+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   40 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcce
Confidence            69999999999999999998 599999999998887543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.37  E-value=3.3e-07  Score=76.60  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      .+||+|||||++|+++|+.|+ .|++|+|+|+++.+|+.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   42 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   42 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcc
Confidence            379999999999999999998 599999999999988654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.37  E-value=2.5e-07  Score=76.33  Aligned_cols=44  Identities=18%  Similarity=0.056  Sum_probs=35.3

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+...+.+.+++.|++++. ++|++++..+           .+.||.||+|+|...
T Consensus       143 ~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          143 NYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWA  186 (351)
T ss_dssp             HHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcCh
Confidence            5778888889999999998 8888775321           167999999999764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.36  E-value=2.6e-07  Score=75.23  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~   48 (275)
                      ..+||+|||||++|+++|++|+ +  |++|+|||+....+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            3589999999999999999997 4  99999999988765

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.35  E-value=3.6e-07  Score=79.04  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=36.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..++||+|||||++||++|+.|+ .|++|+|+|+++.+|+..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            34689999999999999999998 699999999999888643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.30  E-value=4.6e-07  Score=75.67  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~   47 (275)
                      +||+|||||++|+++|+.|+ .  |.+|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            48999999999999999997 5  9999999998765

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.24  E-value=5.3e-06  Score=71.09  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecCe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENE   91 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (275)
                      .++|+|||+|.+|+-+|..|. .|.+|+++++.+.....          .+           ..++.+. ..+..+....
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~----------~~-----------~~~V~~~-~~V~~i~~~~  254 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY----------KW-----------PENWDER-PNLVRVDTEN  254 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC----------CC-----------CTTEEEC-SCEEEECSSE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC----------CC-----------CCceEEc-CCeEEEeCCE
Confidence            478999999999999999998 69999999987653210          00           0133332 3344455557


Q ss_pred             EEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           92 VLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        92 v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                      +.+.+|..+.+|.|++|||..|..|..
T Consensus       255 V~~~dG~~i~~D~Vi~atG~~p~~~~l  281 (464)
T 2xve_A          255 AYFADGSSEKVDAIILCTGYIHHFPFL  281 (464)
T ss_dssp             EEETTSCEEECSEEEECCCBCCCCTTB
T ss_pred             EEECCCCEEeCCEEEECCCCCCCCCCc
Confidence            778889889999999999998776543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.23  E-value=1.7e-06  Score=73.96  Aligned_cols=95  Identities=18%  Similarity=0.263  Sum_probs=59.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+...   .    .............+  .++++... .+..++  
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---~----~~~~~~~l~~~l~~--~Gv~i~~~~~V~~i~~~  237 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT---M----DLEVSRAAERVFKK--QGLTIRTGVRVTAVVPE  237 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT---S----CHHHHHHHHHHHHH--HTCEEECSCCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc---c----CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            478999999999999999998 69999999998764311   0    00000000000000  13444432 333333  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+  .+.+.++..+.+|.+++|+|..|..+
T Consensus       238 ~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          238 AKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             TTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             CCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence            22  34455777899999999999887654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.20  E-value=1.2e-06  Score=72.09  Aligned_cols=34  Identities=35%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++||+|||||+||+.||+.|+ +|.+|+|+|+++.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            379999999999999999998 6999999998774

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.19  E-value=3.1e-06  Score=71.29  Aligned_cols=96  Identities=18%  Similarity=0.278  Sum_probs=62.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....      ..............  ..+++++.. .+..+...
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~~  216 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA------APATLADFVARYHA--AQGVDLRFERSVTGSVDG  216 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT------SCHHHHHHHHHHHH--HTTCEEEESCCEEEEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc------cCHHHHHHHHHHHH--HcCcEEEeCCEEEEEECC
Confidence            579999999999999999998 699999999987643110      00000000000000  024555433 33444433


Q ss_pred             eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           91 EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+.+.++..+.+|.+++|+|..|...
T Consensus       217 ~v~~~~g~~i~~D~vi~a~G~~p~~~  242 (408)
T 2gqw_A          217 VVLLDDGTRIAADMVVVGIGVLANDA  242 (408)
T ss_dssp             EEEETTSCEEECSEEEECSCEEECCH
T ss_pred             EEEECCCCEEEcCEEEECcCCCccHH
Confidence            67777888999999999999987753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.16  E-value=1.5e-06  Score=74.66  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          178 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       178 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      |.+|+++++|++|+..++.+.|.+.+|+++.+|.||+|++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            67899999999999887788888999988999999999884

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.15  E-value=3.5e-06  Score=71.60  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+++|||||+.|+.+|..++ .|.+|+|+|+.+.+....       .............  ..++++.. ..+..++..
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~-------d~~~~~~~~~~l~--~~gV~i~~~~~v~~~~~~  217 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM-------DADMNQPILDELD--KREIPYRLNEEINAINGN  217 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS-------CGGGGHHHHHHHH--HTTCCEEESCCEEEEETT
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc-------cchhHHHHHHHhh--ccceEEEeccEEEEecCC
Confidence            468999999999999999998 699999999987653111       0100000000000  01444433 344456667


Q ss_pred             eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           91 EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+.+.+++.+++|.+++|+|..|...
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCG
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcH
Confidence            88889999999999999999887653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.15  E-value=2.2e-06  Score=71.16  Aligned_cols=91  Identities=22%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeecCe
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITENE   91 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   91 (275)
                      .+++|||||+.|+.+|..|+ .|.+|+++++.+.+..    +    .............  ..++++... .+..++...
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----~----~~~~~~~l~~~l~--~~gV~i~~~~~v~~i~~~~  213 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----L----DEELSNMIKDMLE--ETGVKFFLNSELLEANEEG  213 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----C----CHHHHHHHHHHHH--HTTEEEECSCCEEEECSSE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc----C----CHHHHHHHHHHHH--HCCCEEEcCCEEEEEEeeE
Confidence            68999999999999999998 6999999999876431    0    1000000000000  024555432 344454456


Q ss_pred             EEecCCeEEeCCEEEEccCCCCCC
Q 023957           92 VLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        92 v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                      +.++++. +.+|.+++|+|..|..
T Consensus       214 v~~~~g~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          214 VLTNSGF-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             EEETTEE-EECSCEEEECCEEECC
T ss_pred             EEECCCE-EEcCEEEECcCCCcCH
Confidence            7777777 9999999999998776

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.14  E-value=8.2e-07  Score=79.41  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc------CCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF------SADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~------g~~v~vie~~~~   46 (275)
                      ..+||+||||||+||++|..|++      |.+|+||||.+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            35799999999999999999964      999999999764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.12  E-value=2.2e-06  Score=76.64  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ...+||+|||||++||++|+.|+ +|++|+|+|+.+.+|+.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  145 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            34689999999999999999998 69999999999888754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.10  E-value=4.7e-06  Score=69.58  Aligned_cols=95  Identities=19%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+++|||||+.|+.+|..|+ .|.+|+++|+.+.+....      ..............+  .++++... .+..+.. 
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~  216 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL------LHPAAAKAVQAGLEG--LGVRFHLGPVLASLKKA  216 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT------SCHHHHHHHHHHHHT--TTCEEEESCCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc------cCHHHHHHHHHHHHH--cCCEEEeCCEEEEEEec
Confidence            579999999999999999998 699999999987643110      000000000000000  24444432 2333322 


Q ss_pred             -C--eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           90 -N--EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        90 -~--~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                       .  .+.+.++..+.+|.+++|+|..|..
T Consensus       217 ~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          217 GEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             TTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             CCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence             2  5667788889999999999998765

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.10  E-value=1.3e-06  Score=77.89  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c------CCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F------SADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~------g~~v~vie~~~~   46 (275)
                      .+||||||||+|||+||++|+ .      |.+|+||||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            489999999999999999997 4      999999999754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.10  E-value=2.8e-06  Score=77.62  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ...++|+|||||++||+||+.|+ +|++|+|+|+...+|+.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  316 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCc
Confidence            34589999999999999999998 69999999999988754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.09  E-value=2.2e-05  Score=66.93  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEe--e
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI--T   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   88 (275)
                      .++|+|||||.+|+-+|..|+ .+.+ |+++++.+.+      +        ..          .++. ....+..+  +
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~------l--------~~----------~~i~-~~~~v~~~~~~  266 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD------I--------QN----------ESLQ-QVPEITKFDPT  266 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS------C--------BC----------SSEE-EECCEEEEETT
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc------C--------CC----------CCeE-EecCeEEEecC
Confidence            478999999999999999998 5888 9999997754      0        00          0111 12223334  2


Q ss_pred             cCeEEecCCeE-EeCCEEEEccCCCCCCCc
Q 023957           89 ENEVLTAEGRR-VVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 ~~~v~~~~~~~-~~~~~lilatG~~~~~~~  117 (275)
                      ...+.+.+|.. +.+|.|++|||..|..|-
T Consensus       267 ~~~v~~~dG~~~~~~D~vi~atG~~~~~~~  296 (447)
T 2gv8_A          267 TREIYLKGGKVLSNIDRVIYCTGYLYSVPF  296 (447)
T ss_dssp             TTEEEETTTEEECCCSEEEECCCBCCCCCC
T ss_pred             CCEEEECCCCEeccCCEEEECCCCCcCCCC
Confidence            34677778876 689999999999987765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.08  E-value=4.8e-06  Score=71.35  Aligned_cols=96  Identities=25%  Similarity=0.338  Sum_probs=59.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+....       ..... ..+....+ ..+++++.. .+..++. 
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~-~~l~~~l~-~~gV~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG-------DPETA-ALLRRALE-KEGIRVRTKTKAVGYEKK  239 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHH-HHHHHHHH-HTTCEEECSEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccccc-------CHHHH-HHHHHHHH-hcCCEEEcCCEEEEEEEe
Confidence            479999999999999999998 699999999987643110       00000 00000000 014444432 3333321 


Q ss_pred             -C--eEEec-C--Ce--EEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTA-E--GR--RVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~-~--~~--~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.+. +  ++  ++.+|.+++|+|..|..+.
T Consensus       240 ~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          240 KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             TTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             CCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence             1  34443 4  65  7899999999999877654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.08  E-value=4.7e-06  Score=70.26  Aligned_cols=95  Identities=20%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+....  +    .............  ..+++++. ..+..+...
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~--~----~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~~  214 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV--L----GRRIGAWLRGLLT--ELGVQVELGTGVVGFSGE  214 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH--H----CHHHHHHHHHHHH--HHTCEEECSCCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh--c----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEecc
Confidence            578999999999999999998 699999999987653110  0    0000000000000  01445542 233344322


Q ss_pred             ----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           91 ----EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        91 ----~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                          .+.+.+++.+.+|.+++|+|..|..
T Consensus       215 ~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          215 GQLEQVMASDGRSFVADSALICVGAEPAD  243 (410)
T ss_dssp             SSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred             CcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence                5778889899999999999998775

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.08  E-value=6.5e-06  Score=70.18  Aligned_cols=97  Identities=22%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ..++++|||||++|+.+|..|+ .|.+|+++|+.+.+....      ..............+  .++++... .+..+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~  219 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY------LDKEFTDVLTEEMEA--NNITIATGETVERYEG  219 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT------CCHHHHHHHHHHHHT--TTEEEEESCCEEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc------CCHHHHHHHHHHHHh--CCCEEEcCCEEEEEEc
Confidence            4589999999999999999998 699999999987643110      000000000000001  24555442 3334432


Q ss_pred             C----eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 N----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 ~----~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      .    .+.+ ++..+.+|.+++|+|..|..+.
T Consensus       220 ~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~  250 (447)
T 1nhp_A          220 DGRVQKVVT-DKNAYDADLVVVAVGVRPNTAW  250 (447)
T ss_dssp             SSBCCEEEE-SSCEEECSEEEECSCEEESCGG
T ss_pred             cCcEEEEEE-CCCEEECCEEEECcCCCCChHH
Confidence            2    2444 4568999999999998877543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.07  E-value=2.9e-06  Score=72.44  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++|+.+.+...   +    .............  ..++++... .+..+.. 
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~Gv~i~~~~~v~~i~~~  237 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS---F----DPMISETLVEVMN--AEGPQLHTNAIPKAVVKN  237 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHH--HHSCEEECSCCEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh---h----hHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            579999999999999999998 69999999998764311   0    0000000000000  013444432 2333321 


Q ss_pred             ----CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 ----NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ----~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                          ..+.+.++..+.+|.+++|+|..|...
T Consensus       238 ~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          238 TDGSLTLELEDGRSETVDCLIWAIGREPAND  268 (450)
T ss_dssp             TTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             CCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence                156677888899999999999988765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.03  E-value=8e-06  Score=68.66  Aligned_cols=95  Identities=22%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||+|+.|+.+|..|. .|.+|+++++.+.+....      ........ +.... ...++++... .+..+.. 
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------~~~~~~~~-l~~~l-~~~GV~i~~~~~v~~i~~~  213 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV------VTPEISSY-FHDRH-SGAGIRMHYGVRATEIAAE  213 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT------SCHHHHHH-HHHHH-HHTTCEEECSCCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc------cCHHHHHH-HHHHH-HhCCcEEEECCEEEEEEec
Confidence            478999999999999999997 699999999987653110      00000000 00000 0014455432 3333322 


Q ss_pred             -C---eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           90 -N---EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        90 -~---~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                       .   .+.+.+|+++.+|.+|+|+|..|..
T Consensus       214 ~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          214 GDRVTGVVLSDGNTLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             TTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred             CCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence             1   4677888899999999999998765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=3.8e-06  Score=71.87  Aligned_cols=95  Identities=16%  Similarity=0.265  Sum_probs=57.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (275)
                      ..+|+|||||++|+.+|..|+ .|.+|+|+|+.+.+....       .............  ..++++... .+..++..
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  241 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-------DSELTAPVAESLK--KLGIALHLGHSVEGYENG  241 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-------CHHHHHHHHHHHH--HHTCEEETTCEEEEEETT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccccc-------CHHHHHHHHHHHH--HCCCEEEECCEEEEEEeC
Confidence            578999999999999999998 699999999987653110       0000000000000  013333321 22333222


Q ss_pred             --eEEecCC--eEEeCCEEEEccCCCCCCC
Q 023957           91 --EVLTAEG--RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 --~v~~~~~--~~~~~~~lilatG~~~~~~  116 (275)
                        .+...+|  ..+.+|.+++|+|..|..+
T Consensus       242 ~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          242 CLLANDGKGGQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             EEEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred             CEEEEECCCceEEEECCEEEECcCCCcCCC
Confidence              2222245  5789999999999887664

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.03  E-value=3.5e-06  Score=75.07  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh---c--CCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ---F--SADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~---~--g~~v~vie~~~~   46 (275)
                      .+||+|||||+|||+||+.|+   +  |.+|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            489999999999999999998   3  999999999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.01  E-value=5.5e-06  Score=70.98  Aligned_cols=95  Identities=19%  Similarity=0.306  Sum_probs=60.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       .............  ..+++++.. .+..+.. 
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF-------DPLLSATLAENMH--AQGIETHLEFAVAALERD  236 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHHHHHHHHHH--HTTCEEESSCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccccc-------CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            478999999999999999998 699999999987543110       0000000000000  013444332 2333322 


Q ss_pred             ---CeEEecCCe-EEeCCEEEEccCCCCCCC
Q 023957           90 ---NEVLTAEGR-RVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ---~~v~~~~~~-~~~~~~lilatG~~~~~~  116 (275)
                         ..+.+.+|. .+.+|.+++|+|..|...
T Consensus       237 ~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          237 AQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             TTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred             CCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence               256677887 899999999999987764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.01  E-value=7.4e-06  Score=71.30  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEee-eeE
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASP-AIN   86 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~   86 (275)
                      ..+.+++|||||+.|+..|..++ .|.+|+|+++...+..-        +.    +......+.+  .++.+.... +..
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~--------D~----ei~~~l~~~l~~~gi~~~~~~~v~~  288 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGF--------DQ----QCAVKVKLYMEEQGVMFKNGILPKK  288 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTS--------CH----HHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccccc--------ch----hHHHHHHHHHHhhcceeecceEEEE
Confidence            34578999999999999999998 59999999876543210        00    0000000000  133333221 122


Q ss_pred             ee--cC--eEEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           87 IT--EN--EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        87 ~~--~~--~v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                      +.  ..  .+.+.++..+.+|.+++|+|-.|....+
T Consensus       289 ~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L  324 (542)
T 4b1b_A          289 LTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGL  324 (542)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECSCEEESCGGG
T ss_pred             EEecCCeEEEEEcCCCeEEEEEEEEcccccCCcccc
Confidence            21  12  5566777788899999999999887543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.01  E-value=1.2e-05  Score=67.87  Aligned_cols=95  Identities=21%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+....      ...... ..+.... ...++++.. ..+..+...
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~------~~~~~~-~~l~~~l-~~~GV~i~~~~~v~~i~~~  223 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV------AGEALS-EFYQAEH-RAHGVDLRTGAAMDCIEGD  223 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT------SCHHHH-HHHHHHH-HHTTCEEEETCCEEEEEES
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh------cCHHHH-HHHHHHH-HhCCCEEEECCEEEEEEec
Confidence            578999999999999999998 699999999987653110      000000 0000000 002455543 233344321


Q ss_pred             -----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           91 -----EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        91 -----~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                           .+.+.+++.+.+|.+|+|+|..|..
T Consensus       224 ~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          224 GTKVTGVRMQDGSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             SSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred             CCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence                 5777888899999999999998776

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.00  E-value=1.8e-05  Score=65.03  Aligned_cols=89  Identities=11%  Similarity=-0.099  Sum_probs=70.2

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc---------------------CcC--C---------cchHHHHHHHHHh
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------EFI--G---------PKAGDKTRDWLIS  176 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~---------------------~~~--~---------~~~~~~~~~~~~~  176 (275)
                      +|..|+..|..|.  ..+.+++++++.+.+.                     +.+  .         ..+.+.+.+.+++
T Consensus        11 ~G~aGl~~A~~l~--~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   88 (357)
T 4a9w_A           11 GGQSGLSAGYFLR--RSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQK   88 (357)
T ss_dssp             CSHHHHHHHHHHH--HSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH--HCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Confidence            6778899999988  4588999999875421                     000  0         3466777788888


Q ss_pred             CCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957          177 KKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       177 ~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .|++++.+++|++++.+++.+. +.+.+| ++.+|.||+|+|..+
T Consensus        89 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           89 YALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             TTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             cCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            9999999999999988777777 888887 799999999999643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.00  E-value=1.4e-05  Score=63.98  Aligned_cols=87  Identities=16%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecC-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITEN-   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   90 (275)
                      .++|+|||+|+.|+.+|..|. .| +|+++++.+..      +.....     +   ...  ..+++++...+..+... 
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~------~~~~~~-----~---~l~--~~gv~i~~~~v~~i~~~~  203 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE------PDADQH-----A---LLA--ARGVRVETTRIREIAGHA  203 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC------CCHHHH-----H---HHH--HTTCEEECSCEEEEETTE
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC------CCHHHH-----H---HHH--HCCcEEEcceeeeeecCC
Confidence            578999999999999999998 57 99999987640      000000     0   000  12555555455566554 


Q ss_pred             eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           91 EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+.+.+++.+.+|.+++|+|..|..+
T Consensus       204 ~v~~~~g~~~~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          204 DVVLADGRSIALAGLFTQPKLRITVD  229 (297)
T ss_dssp             EEEETTSCEEEESEEEECCEEECCCS
T ss_pred             eEEeCCCCEEEEEEEEEccCcccCch
Confidence            78888888999999999999987764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.98  E-value=1.9e-05  Score=68.86  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||+|..|+.+|..|+ .+.+|+++++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            3579999999999999999998 5999999999887

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.97  E-value=5.3e-06  Score=72.59  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ...+|++|||+|++|+.+|.+|. .|.+|+|+|+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            35699999999999999999998 69999999998743

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.97  E-value=9.9e-06  Score=70.09  Aligned_cols=95  Identities=14%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    .............+  .++++... .+..+.. 
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---~----d~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~  246 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK---F----DESVINVLENDMKK--NNINIVTFADVVEIKKV  246 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT---S----CHHHHHHHHHHHHH--TTCEEECSCCEEEEEES
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc---c----chhhHHHHHHHHHh--CCCEEEECCEEEEEEEc
Confidence            578999999999999999998 69999999998764311   0    00000000000000  13444322 2333321 


Q ss_pred             --C--eEEecCCeE-EeCCEEEEccCCCCCCC
Q 023957           90 --N--EVLTAEGRR-VVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 --~--~v~~~~~~~-~~~~~lilatG~~~~~~  116 (275)
                        .  .+.+.+|.. +.+|.+++|+|..|...
T Consensus       247 ~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             STTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred             CCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence              1  466677777 89999999999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.96  E-value=9.5e-06  Score=69.35  Aligned_cols=96  Identities=21%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (275)
                      ..++|+|||||+.|+.+|..|+ .|.+|+++|+.+.+....       .............  ..+++++.. .+..+. 
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF-------EKQMAAIIKKRLK--KKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS-------CHHHHHHHHHHHH--HTTCEEEESEEEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc-------CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEE
Confidence            3579999999999999999998 699999999987653110       0000000000000  014444432 333332 


Q ss_pred             -cC--eEEec---CCeEEeCCEEEEccCCCCCCC
Q 023957           89 -EN--EVLTA---EGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 -~~--~v~~~---~~~~~~~~~lilatG~~~~~~  116 (275)
                       ..  .+.+.   ++..+.+|.+++|+|..|..+
T Consensus       240 ~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          240 REDGVTVTYEANGETKTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred             eCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence             11  23332   346789999999999887654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.95  E-value=1.7e-05  Score=67.35  Aligned_cols=96  Identities=24%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....      ..............  ..++++... .+..+..
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~  219 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV------TAPPVSAFYEHLHR--EAGVDIRTGTQVCGFEM  219 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT------SCHHHHHHHHHHHH--HHTCEEECSCCEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch------hhHHHHHHHHHHHH--hCCeEEEeCCEEEEEEe
Confidence            3579999999999999999998 699999999977542110      00000000000000  013444332 2333332


Q ss_pred             ----C---eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           90 ----N---EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        90 ----~---~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                          .   .+.+.++..+.+|.+++|+|..|..
T Consensus       220 ~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~  252 (431)
T 1q1r_A          220 STDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC  252 (431)
T ss_dssp             CTTTCCEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred             ccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCc
Confidence                1   4667788889999999999998765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.93  E-value=2.4e-05  Score=63.30  Aligned_cols=91  Identities=16%  Similarity=0.002  Sum_probs=68.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCC--Cccc--------CcC----CcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKG--SRLL--------EFI----GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~--~~~~--------~~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      +|..|+..|..+..  .+.+++++++.  ..+.        +.+    ..++.+.+.+.+++.|++++. .+|.++..++
T Consensus        23 ~G~aGl~aA~~l~~--~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~   99 (323)
T 3f8d_A           23 LGPAAYGAALYSAR--YMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG   99 (323)
T ss_dssp             CSHHHHHHHHHHHH--TTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC-
T ss_pred             ccHHHHHHHHHHHH--CCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC
Confidence            77788888988884  57889999986  1110        111    124566677778888999999 8999998777


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      +.+.+.+.+|.++.+|.+|+|+|..|..
T Consensus       100 ~~~~v~~~~g~~~~~d~lvlAtG~~~~~  127 (323)
T 3f8d_A          100 DEFVVKTKRKGEFKADSVILGIGVKRRK  127 (323)
T ss_dssp             -CEEEEESSSCEEEEEEEEECCCCEECC
T ss_pred             CEEEEEECCCCEEEcCEEEECcCCCCcc
Confidence            7778888888899999999999988654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.92  E-value=6.7e-06  Score=71.61  Aligned_cols=36  Identities=42%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~   47 (275)
                      ..||+||||||++|+.+|.+|.  .+++|+|||+....
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            3699999999999999999997  47899999998653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=1.2e-05  Score=69.23  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+...........  ..++++... .+..+..
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~--~~Gv~i~~~~~v~~i~~  254 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKF-------DECIQNTITDHYV--KEGINVHKLSKIVKVEK  254 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS-------CHHHHHHHHHHHH--HHTCEEECSCCEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccccc-------CHHHHHHHHHHHH--hCCeEEEeCCEEEEEEE
Confidence            3578999999999999999998 699999999987643110       0000000000000  013444332 2233321


Q ss_pred             ------CeEEecCC-eEEeCCEEEEccCCCCCC
Q 023957           90 ------NEVLTAEG-RRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        90 ------~~v~~~~~-~~~~~~~lilatG~~~~~  115 (275)
                            ..+.+.+| ..+.+|.+++|+|..|..
T Consensus       255 ~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          255 NVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             CC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             cCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence                  14666778 789999999999988765

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.89  E-value=5.1e-06  Score=74.14  Aligned_cols=35  Identities=29%  Similarity=0.576  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC--------CcEEEEcCCC-Cc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS--------ADVTLIDPKE-YF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g--------~~v~vie~~~-~~   47 (275)
                      .++|+|||||++||+||+.|+ .|        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            479999999999999999997 57        9999999998 77

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.89  E-value=8.3e-06  Score=70.17  Aligned_cols=95  Identities=18%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++|+.+.+...+.       ............  ..+++++.. .+..+.. 
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-------~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  253 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMD-------GEVAKATQKFLK--KQGLDFKLSTKVISAKRN  253 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSC-------HHHHHHHHHHHH--HTTCEEECSEEEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccC-------HHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            579999999999999999998 6999999999876542110       000000000000  013444332 3333332 


Q ss_pred             ---C--eEEec-----CCeEEeCCEEEEccCCCCCCC
Q 023957           90 ---N--EVLTA-----EGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ---~--~v~~~-----~~~~~~~~~lilatG~~~~~~  116 (275)
                         .  .+.+.     ++..+.+|.+++|+|..|...
T Consensus       254 ~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          254 DDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             cCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence               1  33333     346789999999999887654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.87  E-value=2.8e-05  Score=68.67  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEE-eeeeEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVA-SPAINIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~   88 (275)
                      ..+|+|||||..|+.+|..|+ .|.+|+++++.+.+....       ..    .......+.+  .++++.. ..+..+.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~----~~~~~l~~~l~~~GV~i~~~~~v~~i~  255 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPI-------DY----EMAAYVHEHMKNHDVELVFEDGVDALE  255 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS-------CH----HHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccC-------CH----HHHHHHHHHHHHcCCEEEECCeEEEEe
Confidence            478999999999999999998 699999999987543110       00    0000000100  2455543 2334444


Q ss_pred             c--CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 E--NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~--~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .  ..+.+.++..+.+|.+++|+|..|..+
T Consensus       256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~  285 (588)
T 3ics_A          256 ENGAVVRLKSGSVIQTDMLILAIGVQPESS  285 (588)
T ss_dssp             GGGTEEEETTSCEEECSEEEECSCEEECCH
T ss_pred             cCCCEEEECCCCEEEcCEEEEccCCCCChH
Confidence            3  467778888999999999999887653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.85  E-value=2.4e-05  Score=67.54  Aligned_cols=95  Identities=24%  Similarity=0.290  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc-ccccccCCcccccccccccccccccEEEE-eeeeEee
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   88 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+..... .+...+...     +.      ..+++.. ..+..+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~-----l~------~~V~i~~~~~v~~i~  241 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKT-----FN------EEFYFDAKARVISTI  241 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHH-----HH------TTSEEETTCEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHH-----Hh------hCcEEEECCEEEEEE
Confidence            3579999999999999999998 6999999999887531110 000000000     00      0122221 1122222


Q ss_pred             --cC--eEEec--CC--eEEeCCEEEEccCCCCCCCc
Q 023957           89 --EN--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 --~~--~v~~~--~~--~~~~~~~lilatG~~~~~~~  117 (275)
                        ..  .+.+.  +|  ..+.+|.+++|+|..|....
T Consensus       242 ~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          242 EKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             ECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             EcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence              11  33332  56  67899999999999876543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.84  E-value=1.1e-05  Score=69.76  Aligned_cols=95  Identities=17%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEe
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI   87 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (275)
                      ..+++|||||..|+.+|..|+ .   |.+|+++++.+.+...   +    .............  ..+++++.. .+..+
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---~----d~~~~~~l~~~l~--~~GV~i~~~~~v~~i  261 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG---F----DETIREEVTKQLT--ANGIEIMTNENPAKV  261 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT---S----CHHHHHHHHHHHH--HTTCEEEESCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc---c----CHHHHHHHHHHHH--hCCCEEEeCCEEEEE
Confidence            478999999999999999987 5   9999999998764311   0    0000000000000  024555433 33333


Q ss_pred             ec-----CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        88 ~~-----~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ..     ..+.+.+|..+.+|.+++|+|..|...
T Consensus       262 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             EEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            21     156677888899999999999987764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.84  E-value=9.4e-05  Score=61.70  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---c--------CC-cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---F--------IG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~--------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~  196 (275)
                      +|..|+.+|..|.  ..+.+++++++.+...-   .        .. .++.....+.+++.|++++.+++|+.++.+++ 
T Consensus        17 gG~AGl~aA~~L~--~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~-   93 (385)
T 3klj_A           17 AGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNK-   93 (385)
T ss_dssp             CSHHHHHHHHHHT--TTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEETTTT-
T ss_pred             CcHHHHHHHHHHh--CCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEECCCC-
Confidence            7888999999984  67889999998775321   0        00 11222234556788999999999999986543 


Q ss_pred             ceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          197 DTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       197 ~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                       .+.+.+|+++.+|.+|+|+|.+|..
T Consensus        94 -~v~~~~g~~~~yd~lvlAtG~~p~~  118 (385)
T 3klj_A           94 -LVTLKSGEKIKYEKLIIASGSIANK  118 (385)
T ss_dssp             -EEEETTSCEEECSEEEECCCEEECC
T ss_pred             -EEEECCCCEEECCEEEEecCCCcCC
Confidence             5778889999999999999987754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.83  E-value=1.2e-05  Score=69.46  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCccccccccccccCCccccccccccccc--ccccEEEEe-eee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY--LVNGRIVAS-PAI   85 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~   85 (275)
                      ..+++|||||+.|+.+|..|+ .   |.+|+++++.+.+...   +    ..    .......+.  ..+++++.. .+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---~----d~----~~~~~l~~~l~~~GV~i~~~~~v~  255 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---F----DS----ELRKQLTEQLRANGINVRTHENPA  255 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---S----CH----HHHHHHHHHHHHTTEEEEETCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc---c----CH----HHHHHHHHHHHhCCCEEEeCCEEE
Confidence            479999999999999999987 5   9999999998764311   0    00    000000000  024455432 333


Q ss_pred             Eeec-----CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           86 NITE-----NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        86 ~~~~-----~~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .+..     ..+.+.++..+.+|.+++|+|..|...
T Consensus       256 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          256 KVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             EEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence            3321     156667787899999999999887654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.82  E-value=1.1e-05  Score=69.47  Aligned_cols=95  Identities=14%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...   +    .............  ..+++++.. .+..+.  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~gV~i~~~~~v~~i~~~  255 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG---A----DRDLVKVWQKQNE--YRFDNIMVNTKTVAVEPK  255 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---S----CHHHHHHHHHHHG--GGEEEEECSCEEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc---c----CHHHHHHHHHHHH--hcCCEEEECCEEEEEEEc
Confidence            579999999999999999998 69999999998764311   0    0000000000000  013444322 223332  


Q ss_pred             cC--eEEecC----CeEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAE----GRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~----~~~~~~~~lilatG~~~~~~  116 (275)
                      ..  .+.+.+    +..+.+|.+++|+|..|...
T Consensus       256 ~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          256 EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             TTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred             CCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence            11  344444    66788999999999987653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.82  E-value=3.6e-05  Score=66.58  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    .............  ..+++++.. .+..+..
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---~----d~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~  251 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY---E----DADAALVLEESFA--ERGVRLFKNARAASVTR  251 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC---S----SHHHHHHHHHHHH--HTTCEEETTCCEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEE
Confidence            3478999999999999999998 69999999998765311   0    0000000000000  013444322 2233321


Q ss_pred             --C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 --N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 --~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                        .  .+.+.++.++.+|.+++|+|..|...
T Consensus       252 ~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~  282 (499)
T 1xdi_A          252 TGAGVLVTMTDGRTVEGSHALMTIGSVPNTS  282 (499)
T ss_dssp             CSSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred             eCCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence              1  35556777899999999999887653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.81  E-value=2.1e-05  Score=67.83  Aligned_cols=96  Identities=20%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...      ...............+  .+++++.. .+..+..
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~l~~~l~~--~GV~i~~~~~v~~i~~  264 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG------YYDRDLTDLMAKNMEE--HGIQLAFGETVKEVAG  264 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TSCHHHHHHHHHHHHT--TTCEEEETCCEEEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh------HHHHHHHHHHHHHHHh--CCeEEEeCCEEEEEEc
Confidence            4579999999999999999998 69999999998764310      0000000000000000  24454432 2333332


Q ss_pred             C----eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 N----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ~----~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      +    .+.+ ++.++.+|.+++|+|..|..+
T Consensus       265 ~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          265 NGKVEKIIT-DKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             SSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred             CCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence            2    2444 567899999999999887764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.81  E-value=2.6e-05  Score=63.36  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=67.7

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------------cC----CcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------FI----GPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                      +|..|+..|..+.  ..+.+++++++.+.+..               .+    ..++...+.+.+++.|++++.+++|..
T Consensus        15 ~G~aGl~aA~~l~--~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   92 (332)
T 3lzw_A           15 GGPVGLFTAFYGG--MRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVES   92 (332)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEE
T ss_pred             CCHHHHHHHHHHH--HCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEE
Confidence            6778888888888  45889999998764320               11    134556677777788999999999999


Q ss_pred             ecCCCC-CceEEcCCCcEEeecEEEEcCCC
Q 023957          190 DSVSEG-SDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       190 i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      ++..++ .+.+.+.+|+ +.+|.||+|+|.
T Consensus        93 i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           93 VEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             EEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             EEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            987765 5678888876 999999999998

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.81  E-value=1.2e-05  Score=70.13  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~   47 (275)
                      ..||+||||||.||+.+|.+|..|.+|+|+|+.+..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence            358999999999999999999879999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.80  E-value=6.5e-05  Score=61.23  Aligned_cols=89  Identities=16%  Similarity=0.064  Sum_probs=67.7

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------------cC----CcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------FI----GPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                      +|..|+..|..+.  ..+.+++++++.+.+..               .+    ..++.+.+.+.+++.+++++.+++|..
T Consensus        13 ~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~   90 (335)
T 2zbw_A           13 AGPTGLFAGFYVG--MRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLGERAET   90 (335)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEESCCEEE
T ss_pred             CCHHHHHHHHHHH--hCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            6778888888887  45789999998754310               01    123455566677778999999999999


Q ss_pred             ecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          190 DSVSEGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       190 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ++.+++.+.+.+.+|+++.+|.||+|+|..
T Consensus        91 i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           91 LEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             EEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            987665666778888889999999999984

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.80  E-value=1.3e-05  Score=64.71  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=31.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      .++|+|||||..|+.+|..|+ .|.+|+++++....
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            478999999999999999998 59999999987653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.80  E-value=2.2e-05  Score=67.43  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++|+.+.+...  .+    ...... .+....+ ..+++++.. .+..+.. 
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--~~----~~~~~~-~l~~~l~-~~Gv~i~~~~~v~~i~~~  249 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--GI----DMEISK-NFQRILQ-KQGFKFKLNTKVTGATKK  249 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--SC----CHHHHH-HHHHHHH-HTTCEEECSEEEEEEEEC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--cc----CHHHHH-HHHHHHH-HCCCEEEeCceEEEEEEc
Confidence            478999999999999999998 69999999998764310  00    000000 0000000 013444322 2333321 


Q ss_pred             -C---eEE-----ecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 -N---EVL-----TAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~---~v~-----~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                       .   .+.     ..++.++.+|.+++|+|..|....
T Consensus       250 ~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~  286 (474)
T 1zmd_A          250 SDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN  286 (474)
T ss_dssp             TTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTT
T ss_pred             CCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCc
Confidence             1   222     245678999999999999877653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.79  E-value=3.9e-05  Score=65.87  Aligned_cols=96  Identities=16%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ..+++|||+|+.|+.+|..|+ . |.+|+++++.+.+...      ...............  ..++++... .+..+..
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~  230 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG------FTSKSLSQMLRHDLE--KNDVVVHTGEKVVRLEG  230 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT------TSCHHHHHHHHHHHH--HTTCEEECSCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc------ccCHHHHHHHHHHHH--hcCCEEEeCCEEEEEEc
Confidence            579999999999999999997 6 9999999998754310      000000000000000  024555433 3334432


Q ss_pred             --C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 --N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 --~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                        .  .+.+.+++++.+|.+++|+|..|..+
T Consensus       231 ~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~  261 (472)
T 3iwa_A          231 ENGKVARVITDKRTLDADLVILAAGVSPNTQ  261 (472)
T ss_dssp             SSSBEEEEEESSCEEECSEEEECSCEEECCH
T ss_pred             cCCeEEEEEeCCCEEEcCEEEECCCCCcCHH
Confidence              2  36667788899999999999987653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.77  E-value=1.9e-05  Score=69.43  Aligned_cols=95  Identities=15%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       .............  ..++++... .+..+.. 
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~~  221 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPV-------DREMAGFAHQAIR--DQGVDLRLGTALSEVSYQ  221 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTS-------CHHHHHHHHHHHH--HTTCEEEETCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhc-------CHHHHHHHHHHHH--HCCCEEEeCCeEEEEecc
Confidence            468999999999999999997 699999999987543110       0000000000000  013333321 2222221 


Q ss_pred             --------------------C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 --------------------N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 --------------------~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                                          .  .+...+++.+.+|.+++|+|..|...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  270 (565)
T 3ntd_A          222 VQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQ  270 (565)
T ss_dssp             CCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCH
T ss_pred             ccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchH
Confidence                                1  45567788899999999999987653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.77  E-value=2.8e-05  Score=66.26  Aligned_cols=94  Identities=19%  Similarity=0.249  Sum_probs=56.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....      ....... .+.....  ..+++.. ..+..+...
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~~~~~-~l~~~l~--~~v~i~~~~~v~~i~~~  218 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS------FDKEVTD-ILEEKLK--KHVNLRLQEITMKIEGE  218 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT------SCHHHHH-HHHHHHT--TTSEEEESCCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh------cCHHHHH-HHHHHHH--hCcEEEeCCeEEEEecc
Confidence            469999999999999999998 699999999987643110      0000000 0000000  0133322 222233221


Q ss_pred             ---eEEecCCeEEeCCEEEEccCCCCCC
Q 023957           91 ---EVLTAEGRRVVYDYLVIATGHKDPV  115 (275)
Q Consensus        91 ---~v~~~~~~~~~~~~lilatG~~~~~  115 (275)
                         .....++.++.+|.+++|+|..|..
T Consensus       219 ~~v~~v~~~g~~i~~D~Vv~a~G~~p~~  246 (449)
T 3kd9_A          219 ERVEKVVTDAGEYKAELVILATGIKPNI  246 (449)
T ss_dssp             SSCCEEEETTEEEECSEEEECSCEEECC
T ss_pred             CcEEEEEeCCCEEECCEEEEeeCCccCH
Confidence               2234467789999999999998765

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.77  E-value=1.8e-05  Score=69.47  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~   45 (275)
                      ..||+||||||.||+.+|.+|.  .+.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4699999999999999999998  489999999987

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.75  E-value=3.2e-05  Score=66.25  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    ....... +....+ ..+++++.. .+..+.. 
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---~----~~~~~~~-l~~~l~-~~gv~i~~~~~v~~i~~~  241 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN---E----DADVSKE-IEKQFK-KLGVTILTATKVESIADG  241 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHHHH-HHHHHH-HHTCEEECSCEEEEEEEC
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHHHH-HHHHHH-HcCCEEEeCcEEEEEEEc
Confidence            579999999999999999998 69999999998764311   0    0000000 000000 013444332 2233322 


Q ss_pred             -C--eEEec-CC--eEEeCCEEEEccCCCCCCCc
Q 023957           90 -N--EVLTA-EG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 -~--~v~~~-~~--~~~~~~~lilatG~~~~~~~  117 (275)
                       .  .+.+. ++  .++.+|.+++|+|..|....
T Consensus       242 ~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~  275 (464)
T 2a8x_A          242 GSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG  275 (464)
T ss_dssp             SSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred             CCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence             1  23332 45  67899999999999877654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.74  E-value=4.1e-05  Score=65.96  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (275)
                      ...+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....       ....... +..... ..+++++. ..+..+..
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~-l~~~l~-~~Gv~i~~~~~V~~i~~  260 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNF-------DYDLRQL-LNDAMV-AKGISIIYEATVSQVQS  260 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHHHH-HHHHHH-HHTCEEESSCCEEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccccc-------CHHHHHH-HHHHHH-HCCCEEEeCCEEEEEEe
Confidence            3579999999999999999998 699999999987643110       0000000 000000 01444443 23333432


Q ss_pred             C----eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 N----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 ~----~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      .    .+.+.++..+.+|.+++|+|..|....
T Consensus       261 ~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          261 TENCYNVVLTNGQTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             CSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             eCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence            2    577778888999999999998876653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.73  E-value=9.4e-05  Score=60.99  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-------C--------cC----CcchHHHHHHHHHhCCCEEEcCceeee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--------FI----GPKAGDKTRDWLISKKVDVKLGERVNL  189 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------~--------~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~  189 (275)
                      +|..|+..|..+.  ..+.+++++++.+.+.       +        .+    ...+.+.+.+.+++.|++++.+++|+.
T Consensus        22 ~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~   99 (360)
T 3ab1_A           22 GGPTGIFAAFQCG--MNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNETVTK   99 (360)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEE
T ss_pred             CCHHHHHHHHHHH--hCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEE
Confidence            6777888888887  4588999999875431       0        11    134556667777888999999999999


Q ss_pred             ecCCCC-CceEEcCCCcEEeecEEEEcCCCC
Q 023957          190 DSVSEG-SDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       190 i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ++..++ .+.+.+.+|+++.+|.||+|+|..
T Consensus       100 i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A          100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             EEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             EEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            987654 567888888889999999999984

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.72  E-value=3.1e-05  Score=67.32  Aligned_cols=94  Identities=16%  Similarity=0.222  Sum_probs=59.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec--
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE--   89 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   89 (275)
                      .+++|||||..|+.+|..|+ .|.+|+++++.+.+...   +    .............  ..+++++.. .+..+..  
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~~~  285 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI---K----DNETRAYVLDRMK--EQGMEIISGSNVTRIEEDA  285 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC---C----SHHHHHHHHHHHH--HTTCEEESSCEEEEEEECT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc---c----cHHHHHHHHHHHH--hCCcEEEECCEEEEEEEcC
Confidence            79999999999999999998 69999999998764311   0    0000000000000  013444322 2333321  


Q ss_pred             C------eEEecCCe-EEeCCEEEEccCCCCCCC
Q 023957           90 N------EVLTAEGR-RVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ~------~v~~~~~~-~~~~~~lilatG~~~~~~  116 (275)
                      .      .+.+.+|. ++.+|.+++|+|..|...
T Consensus       286 ~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          286 NGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             TSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             CCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence            1      35566776 899999999999998764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.70  E-value=2.7e-05  Score=66.48  Aligned_cols=96  Identities=20%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...      ...............  ..++++... .+..+.. 
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~l~~~l~--~~Gv~i~~~~~v~~i~~~  220 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK------YFDKEFTDILAKDYE--AHGVNLVLGSKVAAFEEV  220 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT------TSCHHHHHHHHHHHH--HTTCEEEESSCEEEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh------hhhhhHHHHHHHHHH--HCCCEEEcCCeeEEEEcC
Confidence            578999999999999999998 69999999998754310      000000000000000  014444432 2333332 


Q ss_pred             -CeE--EecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 -NEV--LTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 -~~v--~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                       ..+  ...++.++.+|.+++|+|..|..+
T Consensus       221 ~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          221 DDEIITKTLDGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             TTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred             CCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence             221  223677899999999999987764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.69  E-value=6.7e-05  Score=64.44  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       ..    .......+.+  .+++++.. .+..+
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~----~~~~~l~~~l~~~Gv~v~~~~~v~~i  247 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV-------DE----QVAKEAQKILTKQGLKILLGARVTGT  247 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS-------CH----HHHHHHHHHHHHTTEEEEETCEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCccc-------CH----HHHHHHHHHHHhCCCEEEECCEEEEE
Confidence            3578999999999999999998 699999999987653110       00    0000000000  14444432 33333


Q ss_pred             e--cC--eEEecCC---eEEeCCEEEEccCCCCCCC
Q 023957           88 T--EN--EVLTAEG---RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        88 ~--~~--~v~~~~~---~~~~~~~lilatG~~~~~~  116 (275)
                      .  ..  .+.+.++   ..+.+|.+++|+|..|...
T Consensus       248 ~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          248 EVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             EECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred             EEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence            3  11  3444433   5789999999999876553

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.69  E-value=3.1e-05  Score=67.63  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE   48 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~   48 (275)
                      ++...+|++|||+|++|+.+|++|. . +.+|+|+|+.....
T Consensus         9 ~~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~   50 (546)
T 2jbv_A            9 LSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR   50 (546)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred             cccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence            3445699999999999999999997 4 89999999987653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.68  E-value=3e-05  Score=68.04  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~   46 (275)
                      ..||+||||||.||+.+|.+|. .+ .+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            3599999999999999999998 44 79999999876

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.68  E-value=2.9e-05  Score=66.77  Aligned_cols=95  Identities=18%  Similarity=0.271  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (275)
                      ..++|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       .............+  .++++.. ..+..+..
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~l~~--~Gv~i~~~~~v~~i~~  255 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIY-------DGDMAEYIYKEADK--HHIEILTNENVKAFKG  255 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSS-------CHHHHHHHHHHHHH--TTCEEECSCCEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcC-------CHHHHHHHHHHHHH--cCcEEEcCCEEEEEEc
Confidence            4579999999999999999998 699999999987543210       00000000000000  1344432 22233322


Q ss_pred             C----eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           90 N----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        90 ~----~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      .    .+.+ ++.++.+|.+++|+|..|..+
T Consensus       256 ~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          256 NERVEAVET-DKGTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             SSBEEEEEE-TTEEEECSEEEECSCEEESCG
T ss_pred             CCcEEEEEE-CCCEEEcCEEEECcCCCcChH
Confidence            1    2344 345899999999999886653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.68  E-value=4.6e-05  Score=65.35  Aligned_cols=98  Identities=19%  Similarity=0.282  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       +..... .+........+++++.. .+..+..
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~~-~l~~~l~~~~gv~i~~~~~v~~i~~  244 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTL-------DEDVTN-ALVGALAKNEKMKFMTSTKVVGGTN  244 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHHH-HHHHHHHHHTCCEEECSCEEEEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccC-------CHHHHH-HHHHHHhhcCCcEEEeCCEEEEEEE
Confidence            3478999999999999999998 699999999987653110       000000 00000000024444332 3333332


Q ss_pred             --C--eEEec--CC--eEEeCCEEEEccCCCCCCCc
Q 023957           90 --N--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 --~--~v~~~--~~--~~~~~~~lilatG~~~~~~~  117 (275)
                        .  .+.+.  ++  ..+.+|.+++|+|..|....
T Consensus       245 ~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  280 (468)
T 2qae_A          245 NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG  280 (468)
T ss_dssp             CSSSEEEEEECC---EEEEEESEEEECSCEEECCTT
T ss_pred             cCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCC
Confidence              1  33433  45  57899999999999877643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.68  E-value=5e-05  Score=65.08  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL  208 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence            3578999999999999999998 699999999987653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.67  E-value=0.00015  Score=58.37  Aligned_cols=92  Identities=20%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCC--ccc---------C---cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL---------E---FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  194 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~---------~---~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  194 (275)
                      +|+.|+..|..+.  ..+.++.++.+..  ...         .   ...+.+.+.+.+.+++.|++++.+++|..+..+.
T Consensus         9 ~G~aGl~aA~~l~--~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~   86 (310)
T 1fl2_A            9 SGPAGAAAAIYSA--RKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAA   86 (310)
T ss_dssp             CSHHHHHHHHHHH--TTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCS
T ss_pred             cCHHHHHHHHHHH--HCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecc
Confidence            6778888998888  5688898886531  110         0   0012455667777888899999999999996542


Q ss_pred             ---CCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          195 ---GSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       195 ---~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                         +.+.+.+.+|+++.+|.+|+|+|..|..
T Consensus        87 ~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           87 VEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             STTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             cCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence               2566778888889999999999987643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.66  E-value=7.4e-05  Score=64.47  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       ....    .....+.+  .++++... .+..+
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~----~~~l~~~l~~~gV~v~~~~~v~~i  265 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGM-------DGEV----AKQLQRMLTKQGIDFKLGAKVTGA  265 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSS-------CHHH----HHHHHHHHHHTTCEEECSEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccC-------CHHH----HHHHHHHHHhCCCEEEECCeEEEE
Confidence            3578999999999999999998 699999999987653110       0000    00000000  13444322 22233


Q ss_pred             e--cC--eEEecC---C--eEEeCCEEEEccCCCCCCCc
Q 023957           88 T--EN--EVLTAE---G--RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        88 ~--~~--~v~~~~---~--~~~~~~~lilatG~~~~~~~  117 (275)
                      .  ..  .+.+.+   +  ..+.+|.+++|+|..|....
T Consensus       266 ~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~  304 (491)
T 3urh_A          266 VKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG  304 (491)
T ss_dssp             EEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred             EEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence            2  12  233321   4  57899999999999877654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.66  E-value=0.00012  Score=59.65  Aligned_cols=90  Identities=21%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||+|..|+.+|..|+ .+.+|+++++.+.+...         .....+ ...    ..+++++. ..+..+...
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~---------~~~~~~-~~~----~~gV~v~~~~~v~~i~~~  220 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS---------KIMLDR-ARN----NDKIRFLTNHTVVAVDGD  220 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC---------TTHHHH-HHH----CTTEEEECSEEEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc---------HHHHHH-Hhc----cCCcEEEeCceeEEEecC
Confidence            578999999999999999998 59999999998765210         000000 000    12444432 223333322


Q ss_pred             ----eEEec---CC--eEEeCCEEEEccCCCCCCC
Q 023957           91 ----EVLTA---EG--RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ----~v~~~---~~--~~~~~~~lilatG~~~~~~  116 (275)
                          .+.+.   ++  ..+.+|.+++|+|..|..+
T Consensus       221 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2a87_A          221 TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSG  255 (335)
T ss_dssp             SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCT
T ss_pred             CcEeEEEEEEcCCCceEEeecCEEEEccCCccChh
Confidence                24432   33  5789999999999887654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.66  E-value=5e-05  Score=66.94  Aligned_cols=57  Identities=9%  Similarity=-0.131  Sum_probs=46.8

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCC--CCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSD-TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ..+.+.+.+.++..|.+|+++++|.+|..++  +.+ .++..+|+++.||.||......|
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp  437 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  437 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcC
Confidence            3688889999999999999999999987665  444 35567799999999999877665

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.65  E-value=4.4e-05  Score=65.33  Aligned_cols=93  Identities=15%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEE-eeeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVA-SPAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~   87 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+    .......+.+  .+++++. ..+..+
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~-------~~----~~~~~l~~~l~~~Gv~i~~~~~v~~i  237 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRF-------DQ----DMRRGLHAAMEEKGIRILCEDIIQSV  237 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CH----HHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc-------CH----HHHHHHHHHHHHCCCEEECCCEEEEE
Confidence            3578999999999999999998 699999999987543110       00    0000000000  1445543 233333


Q ss_pred             ecC-----eEE-ecCCeEEeCCEEEEccCCCCCCC
Q 023957           88 TEN-----EVL-TAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        88 ~~~-----~v~-~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ...     .+. +.+++ +.+|.+++|+|..|...
T Consensus       238 ~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          238 SADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             EECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             EEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            321     466 77787 99999999999886654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.64  E-value=2.4e-05  Score=68.46  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~   47 (275)
                      .||++|||||.||+.+|.+|.  .+.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            489999999999999999997  48999999998765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.63  E-value=8.6e-05  Score=59.82  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEE-EeeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   90 (275)
                      ..+|+|||+|+.|+.+|..|. .+.+|+++++.+.+.......         .+..     ...+++++ ...+..+...
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~~-----~~~gv~~~~~~~v~~i~~~  212 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV---------EKVK-----KNEKIELITSASVDEVYGD  212 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHH---------HHHH-----HCTTEEEECSCEEEEEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHH---------HHHH-----hcCCeEEEeCcEEEEEEcC
Confidence            478999999999999999998 599999999988653111000         0000     01234443 2222333211


Q ss_pred             -----eEEec--CCe--EEeCCEEEEccCCCCCCC
Q 023957           91 -----EVLTA--EGR--RVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 -----~v~~~--~~~--~~~~~~lilatG~~~~~~  116 (275)
                           .+.+.  +|.  ++.+|.+++|+|..|...
T Consensus       213 ~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~  247 (315)
T 3r9u_A          213 KMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNE  247 (315)
T ss_dssp             TTEEEEEEEECTTSCEEEECCSCEEECSCEEECCG
T ss_pred             CCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCch
Confidence                 23333  664  789999999999887653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.63  E-value=6.4e-05  Score=63.85  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             CCcchhhHHHHHhh-hCCCCEEEEEeCCCcccCc----------C-CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC
Q 023957          129 GGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLEF----------I-GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       129 ~g~~~~~~a~~l~~-~~~~~~v~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~  196 (275)
                      +|..|+..|..|+. ...+.+++++++.+.+...          . ..++...+.+.+++.|++++. .+|+.++.+++ 
T Consensus        12 gG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~~-   89 (437)
T 3sx6_A           12 AGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQIDAEAQ-   89 (437)
T ss_dssp             CSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEEEETTTT-
T ss_pred             CcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEEEEcCCC-
Confidence            67788888988884 1268899999988754210          0 011222245667788999985 68888876543 


Q ss_pred             ceEEcCCCcEEeecEEEEcCCCCCCchhh
Q 023957          197 DTYLTSTGDTINADCHFLCTGKPVGSDWL  225 (275)
Q Consensus       197 ~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  225 (275)
                       .+.+.+|+++.+|.+|+|+|..|+...+
T Consensus        90 -~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           90 -NITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             -EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             -EEEECCCCEEECCEEEECCCCCcCcccC
Confidence             6778888889999999999998765433

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.62  E-value=8.4e-05  Score=64.12  Aligned_cols=96  Identities=21%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (275)
                      ..+|+|||||+.|+.+|..|+     .|.+|+++++.+.....  .+.    ..........+.+  .++++... .+..
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~--~l~----~~~~~~~~~~l~~--~GV~v~~~~~V~~  251 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK--ILP----EYLSNWTMEKVRR--EGVKVMPNAIVQS  251 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT--TSC----HHHHHHHHHHHHT--TTCEEECSCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc--cCC----HHHHHHHHHHHHh--cCCEEEeCCEEEE
Confidence            478999999999999999885     27899999987542110  000    0000000000000  14444433 2333


Q ss_pred             ee--cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           87 IT--EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        87 ~~--~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      +.  ..  .+.+.+|.++.+|.+++|+|..|...
T Consensus       252 i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          252 VGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred             EEecCCeEEEEECCCCEEECCEEEECCCCCccHH
Confidence            32  22  46677888999999999999987764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.62  E-value=3.8e-05  Score=65.90  Aligned_cols=95  Identities=15%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+....       ....... +....+ ..+++++. ..+..+...
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~-l~~~l~-~~gv~i~~~~~v~~i~~~  247 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-------DAEIRKQ-FQRSLE-KQGMKFKLKTKVVGVDTS  247 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-------CHHHHHH-HHHHHH-HSSCCEECSEEEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc-------cHHHHHH-HHHHHH-HcCCEEEeCCEEEEEEEc
Confidence            578999999999999999998 699999999987653110       0000000 000000 01334432 233333321


Q ss_pred             ----eEEec---CC--eEEeCCEEEEccCCCCCCC
Q 023957           91 ----EVLTA---EG--RRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        91 ----~v~~~---~~--~~~~~~~lilatG~~~~~~  116 (275)
                          .+.+.   ++  ..+.+|.+++|+|..|...
T Consensus       248 ~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  282 (470)
T 1dxl_A          248 GDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS  282 (470)
T ss_dssp             SSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred             CCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence                23332   33  6789999999999887653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.61  E-value=0.00011  Score=59.89  Aligned_cols=91  Identities=19%  Similarity=0.127  Sum_probs=69.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCC----ccc------------CcC-----CcchHHHHHHHHHhCCCEEEcCcee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGS----RLL------------EFI-----GPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~----~~~------------~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                      +|..|+..|..|..  .+.+++++++.+    ...            +.+     ..++.+.+.+.+++.|++++.++ |
T Consensus        30 ~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v  106 (338)
T 3itj_A           30 SGPAAHTAAIYLAR--AEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITET-V  106 (338)
T ss_dssp             CSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECSC-E
T ss_pred             cCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeE-E
Confidence            77788889999884  588899999843    110            111     12566777788888999999988 9


Q ss_pred             eeecCCCCCceEEc---CCCcEEeecEEEEcCCCCCCc
Q 023957          188 NLDSVSEGSDTYLT---STGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       188 ~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      ..++.+++.+.+.+   .++..+.+|.+|+|+|..|..
T Consensus       107 ~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          107 SKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             EEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             EEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence            99988777777766   366789999999999987653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.61  E-value=6.5e-05  Score=64.55  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ..+|+|||||..|+.+|..|+ .|.+|+++++.+.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            479999999999999999998 69999999997764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.59  E-value=0.00019  Score=57.75  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=66.9

Q ss_pred             CCcchhhHHHHHhhhCCCC-EEEEEeCCCc---c--------cCcC----C-cchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957          129 GGPTGVELAGEIAVDFPEK-KVTLVHKGSR---L--------LEFI----G-PKAGDKTRDWLISKKVDVKLGERVNLDS  191 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~---~--------~~~~----~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~  191 (275)
                      +|+.|+..|..+..  .+. ++.++++...   .        .+.+    . ..+.+.+.+.+++.|++++. .+|..++
T Consensus         9 ~G~aGl~aA~~l~~--~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~   85 (311)
T 2q0l_A            9 GGPAGLSAGLYATR--GGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVS   85 (311)
T ss_dssp             CSHHHHHHHHHHHH--TTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEE
T ss_pred             ccHHHHHHHHHHHH--CCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEE
Confidence            67788888988884  477 8999987521   0        1111    1 23556667777888999988 7888887


Q ss_pred             CCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          192 VSEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       192 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      .+++.+.+.+.+|+++.+|.||+|+|..|..
T Consensus        86 ~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           86 KKDSHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EETTEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EcCCEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            7666666777888889999999999976643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.59  E-value=5e-05  Score=61.34  Aligned_cols=36  Identities=33%  Similarity=0.559  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            468999999999999999998 599999999987653

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.59  E-value=5e-05  Score=65.75  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ..+|++|||+|++|+.+|.+|. .|.+|+|+|+....
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4589999999999999999998 69999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.57  E-value=5.1e-05  Score=65.67  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .+|++|||+|++|+.+|++|. .|.+|+|+|+.....
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            489999999999999999998 699999999988554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.53  E-value=9.5e-05  Score=63.33  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=56.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (275)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.. .       .+...........  ..++++... .+..+.  
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~-------~~~~~~~l~~~l~--~~Gv~i~~~~~v~~i~~~  245 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-E-------DPAIGEAVTAAFR--AEGIEVLEHTQASQVAHM  245 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-S-------CHHHHHHHHHHHH--HTTCEEETTCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-C-------CHHHHHHHHHHHH--hCCCEEEcCCEEEEEEEe
Confidence            578999999999999999998 6999999999875431 0       0000000000000  013344321 222332  


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ..  .+.++ +.++.+|.+++|+|..|...
T Consensus       246 ~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          246 DGEFVLTTT-HGELRADKLLVATGRTPNTR  274 (467)
T ss_dssp             TTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred             CCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence            12  34444 56789999999999887653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.53  E-value=0.00034  Score=57.73  Aligned_cols=89  Identities=19%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CCcchhhHHHHHhhhCCCC-EEEEEeCCCccc--------------C-------cC---------------------C-c
Q 023957          129 GGPTGVELAGEIAVDFPEK-KVTLVHKGSRLL--------------E-------FI---------------------G-P  164 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~--------------~-------~~---------------------~-~  164 (275)
                      +|..|+..|..+..  .+. +++++++.+ +.              +       ..                     . .
T Consensus        12 aG~aGl~aA~~l~~--~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   88 (369)
T 3d1c_A           12 AGAAGIGMAITLKD--FGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGE   88 (369)
T ss_dssp             CSHHHHHHHHHHHH--TTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSSCBHH
T ss_pred             cCHHHHHHHHHHHH--cCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccccCCCHH
Confidence            67788888988884  466 899998774 10              0       00                     0 1


Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      .+.+.+.+.+++.|++++.+++|.+++.+++.+.+.+.++ ++.+|.||+|+|..+.
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence            2334456667788999999999999987666677777777 4999999999998754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.52  E-value=7e-05  Score=66.00  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~   47 (275)
                      ...+|++|||+|++|+.+|.+|.  .+.+|+|+|+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            34589999999999999999997  48999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.52  E-value=0.00014  Score=62.68  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee-
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-   88 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++...+...        .............  ..+++++.. .+..+. 
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~--------d~~~~~~l~~~l~--~~gv~~~~~~~v~~i~~  253 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGF--------DQQMSSLVTEHME--SHGTQFLKGCVPSHIKK  253 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTS--------CHHHHHHHHHHHH--HTTCEEEETEEEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccC--------CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEE
Confidence            3468999999999999999998 69999999986432110        0000000000000  014454432 222332 


Q ss_pred             --cC--eEEecC---Ce--EEeCCEEEEccCCCCCCCc
Q 023957           89 --EN--EVLTAE---GR--RVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        89 --~~--~v~~~~---~~--~~~~~~lilatG~~~~~~~  117 (275)
                        ..  .+.+.+   ++  ++.+|.+++|+|..|....
T Consensus       254 ~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          254 LPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT  291 (488)
T ss_dssp             CTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGG
T ss_pred             cCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCc
Confidence              11  233322   44  4789999999998877643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.52  E-value=0.00012  Score=63.06  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++...+......+...+.        ....  ..+++++.. .+..+..
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~--------~~l~--~~Gv~i~~~~~v~~i~~  255 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVA--------ASME--ERGIPFLRKTVPLSVEK  255 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHH--------HHHH--HTTCCEEETEEEEEEEE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHH--------HHHH--hCCCEEEeCCEEEEEEE
Confidence            3468999999999999999998 69999999985432110000000000        0000  013444332 2233321


Q ss_pred             --C---eEEecCC-----eEEeCCEEEEccCCCCCCCc
Q 023957           90 --N---EVLTAEG-----RRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 --~---~v~~~~~-----~~~~~~~lilatG~~~~~~~  117 (275)
                        .   .+.+.++     ..+.+|.+++|+|..|....
T Consensus       256 ~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~  293 (483)
T 3dgh_A          256 QDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDD  293 (483)
T ss_dssp             CTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGG
T ss_pred             cCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCc
Confidence              1   2444333     26899999999998876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.51  E-value=0.00028  Score=57.36  Aligned_cols=90  Identities=21%  Similarity=0.063  Sum_probs=66.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeC----CCccc------------CcC-----CcchHHHHHHHHHhCCCEEEcCcee
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHK----GSRLL------------EFI-----GPKAGDKTRDWLISKKVDVKLGERV  187 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~----~~~~~------------~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v  187 (275)
                      +|..|+.+|..+..  .+.+++++++    .....            +.+     ...+.+.+.+.+++.|++++.++ |
T Consensus        16 ~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v   92 (333)
T 1vdc_A           16 SGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTET-V   92 (333)
T ss_dssp             CSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECCC-C
T ss_pred             cCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEEEeE-E
Confidence            67788888888884  4788999987    22110            111     12455667777888999999987 8


Q ss_pred             eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      ..++..++.+.+.+ +|+++.+|.||+|+|..|..
T Consensus        93 ~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           93 TKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            88887666677777 77889999999999987643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.49  E-value=0.00023  Score=62.22  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------------------cC----------------CcchHHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------FI----------------GPKAGDKTR  171 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------------~~----------------~~~~~~~~~  171 (275)
                      +|..|+.+|..|..  .+.+++++++.+.+..                     .+                .+++.+.+.
T Consensus        29 aG~aGl~aA~~L~~--~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~  106 (549)
T 4ap3_A           29 AGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLE  106 (549)
T ss_dssp             CSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHHHHHH
T ss_pred             chHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHHHHHHH
Confidence            67788888888884  6789999998653210                     00                123455566


Q ss_pred             HHHHhCCC--EEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCC--CCCC
Q 023957          172 DWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG--KPVG  221 (275)
Q Consensus       172 ~~~~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G--~~~~  221 (275)
                      +.+++.|+  +++.+++|++++.+++  .+.|.+.+|+++.||.||+|+|  ..|.
T Consensus       107 ~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~  162 (549)
T 4ap3_A          107 HVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN  162 (549)
T ss_dssp             HHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred             HHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence            77788888  8999999999976554  5678888999999999999999  4444

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.46  E-value=0.00027  Score=60.25  Aligned_cols=94  Identities=18%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc--Cc-C----C------cchHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EF-I----G------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--~~-~----~------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      +|..|+..|..++...++.+++++++.+.+.  +. .    .      ..+.....+.+++.|++++.+++|..++..++
T Consensus        10 gG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~   89 (452)
T 3oc4_A           10 ASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVAMDVENQ   89 (452)
T ss_dssp             CSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEEEEETTTT
T ss_pred             CCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEEEECCCC
Confidence            6788999999998766689999999887543  10 0    0      01111134566778999999999999987766


Q ss_pred             CceEE-cCCCcEEeecEEEEcCCCCCCc
Q 023957          196 SDTYL-TSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       196 ~~~v~-~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      .+.+. ..+++++.+|.+|+|+|.+|..
T Consensus        90 ~v~v~~~~~~~~~~~d~lviAtG~~p~~  117 (452)
T 3oc4_A           90 LIAWTRKEEQQWYSYDKLILATGASQFS  117 (452)
T ss_dssp             EEEEEETTEEEEEECSEEEECCCCCBCC
T ss_pred             EEEEEecCceEEEEcCEEEECCCcccCC
Confidence            65554 3356689999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.44  E-value=0.00053  Score=55.56  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCc---c--------cCcC-----CcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      +|+.|+..|..+..  .+.++.++++...   +        .+.+     ...+.+.+.+.+++.|++++. .+|..++.
T Consensus        16 ~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~   92 (325)
T 2q7v_A           16 GGPAGLTAAIYTGR--AQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQH   92 (325)
T ss_dssp             CSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEE
T ss_pred             CCHHHHHHHHHHHH--cCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEe
Confidence            67778888888874  5789999998721   0        0111     124556667778889999987 57888876


Q ss_pred             C--CCC-ceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          193 S--EGS-DTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       193 ~--~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      .  ++. +.+.+.+|+++.+|.||+|+|..|..
T Consensus        93 ~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           93 DATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             CTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             ccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            5  333 56777788899999999999987643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.42  E-value=0.00013  Score=62.41  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~   47 (275)
                      .++|+|||||.+|+-+|..|. .  +.+|+++++.+.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            578999999999999999997 4  8899999998864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.42  E-value=8.9e-05  Score=62.81  Aligned_cols=89  Identities=18%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC--c--------CC-cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--F--------IG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  197 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~--------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  197 (275)
                      +|..|+.+|..|+...++.+|+++++.+.+.-  .        .. .++...+.+.+++.|++++.+ +|+.|+.++  .
T Consensus        10 gG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~Id~~~--~   86 (430)
T 3hyw_A           10 GGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESIDPDA--N   86 (430)
T ss_dssp             SSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEEETTT--T
T ss_pred             CCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEEECCC--C
Confidence            67788899999987667789999998875321  0        00 011111234456679999875 688887544  3


Q ss_pred             eEEcCCCcEEeecEEEEcCCCCC
Q 023957          198 TYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       198 ~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .|++++|+++++|.+|+|+|.++
T Consensus        87 ~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           87 TVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             EEEETTCCEEECSEEEECCCCEE
T ss_pred             EEEECCCCEEECCEEEEeCCCCc
Confidence            57888999999999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.41  E-value=0.00035  Score=60.67  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ...+++|||||+.|+.+|..|+ .|.+|+++++..
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~  243 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI  243 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc
Confidence            3467999999999999999998 699999999853

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.31  E-value=0.00067  Score=58.93  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCC--cccC------------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCC-
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGS--RLLE------------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS-  193 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-  193 (275)
                      +|+.|+..|..++  ..+.++.++.+..  ....            ...+.+...+.+.+++.|++++.+++|..+..+ 
T Consensus       220 gG~AGl~aA~~la--~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~  297 (521)
T 1hyu_A          220 SGPAGAAAAVYSA--RKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAA  297 (521)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCS
T ss_pred             CcHHHHHHHHHHH--hCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEecc
Confidence            8999999999998  4588898887532  1100            011245666777888899999999999999643 


Q ss_pred             --CCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          194 --EGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       194 --~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                        ++.+.+.+.+|+++.+|.||+|+|..|.
T Consensus       298 ~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          298 TEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             STTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             CCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence              2256688888888999999999997664

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.30  E-value=0.00067  Score=54.72  Aligned_cols=90  Identities=14%  Similarity=0.167  Sum_probs=65.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCc---c--------cCcC-----CcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNLDSV  192 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  192 (275)
                      +|..|+..|..+.  ..+.+++++++...   +        .+.+     .+.+.+.+.+.+++.|++++.++ +..++.
T Consensus        13 ~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~   89 (320)
T 1trb_A           13 SGPAGYTAAVYAA--RANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDL   89 (320)
T ss_dssp             CSHHHHHHHHHHH--TTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEEC
T ss_pred             cCHHHHHHHHHHH--HCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEe
Confidence            6778888888888  45788888885321   0        0111     12455666777788999999986 888877


Q ss_pred             CCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          193 SEGSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      .++.+.+ +.+++++.+|.+|+|+|..|..
T Consensus        90 ~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           90 QNRPFRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             SSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             cCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence            6666666 6677889999999999987643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.28  E-value=0.00029  Score=59.17  Aligned_cols=92  Identities=12%  Similarity=0.016  Sum_probs=66.2

Q ss_pred             CCcchhhHHHHHhh-hCCCCEEEEEeCCCcccC-----------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC
Q 023957          129 GGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLE-----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  196 (275)
Q Consensus       129 ~g~~~~~~a~~l~~-~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~  196 (275)
                      +|..|+..|..|.. ...+.+++++++.+.+..           ....++...+.+.+++.|++++.+ +|+.++.+++.
T Consensus         9 gG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i~~~~~~   87 (409)
T 3h8l_A            9 GRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSSM   87 (409)
T ss_dssp             SSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEEEETTTTE
T ss_pred             CCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEEEeCCCCE
Confidence            67889999999884 236889999998875321           112234445666777789999987 89888765543


Q ss_pred             ceEEcCCCc----EEeecEEEEcCCCCCCch
Q 023957          197 DTYLTSTGD----TINADCHFLCTGKPVGSD  223 (275)
Q Consensus       197 ~~v~~~~g~----~~~~d~vv~a~G~~~~~~  223 (275)
                        +.+.+++    ++.+|.||+|+|..|+.+
T Consensus        88 --V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           88 --VYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             --EEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             --EEEccCCcccceeeCCEEEECCCCCcCcc
Confidence              4444444    499999999999987654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.23  E-value=0.00034  Score=61.03  Aligned_cols=88  Identities=17%  Similarity=0.075  Sum_probs=65.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-----------------------------------c--CCcchHHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------F--IGPKAGDKTR  171 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----------------------------------~--~~~~~~~~~~  171 (275)
                      +|..|+.+|..|..  .+.+++++++.+.+..                                   .  ..+++.+.+.
T Consensus        17 aG~aGl~aA~~L~~--~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~   94 (545)
T 3uox_A           17 AGVTGIYQAFLINQ--AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVN   94 (545)
T ss_dssp             CSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHHHHHHH
Confidence            67788888888884  6789999998754310                                   0  0123455566


Q ss_pred             HHHHhCCC--EEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCC
Q 023957          172 DWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       172 ~~~~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      +.+++.|+  .+..+++|++++.+++  .+.|.+.+|+++.||.||+|+|.
T Consensus        95 ~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~  145 (545)
T 3uox_A           95 RAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGP  145 (545)
T ss_dssp             HHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCS
T ss_pred             HHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence            66777787  7899999999875443  55788889989999999999994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.22  E-value=0.00057  Score=61.47  Aligned_cols=96  Identities=17%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             CCeEEEEc--CChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee
Q 023957           13 NKRVVVIG--GGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT   88 (275)
Q Consensus        13 ~~~vvIIG--gG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (275)
                      ..+|+|||  +|..|+.+|..|+ .|.+|+++++.+.+......      ... ...+..... ..+++++.. .+..+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~------~~~-~~~l~~~l~-~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN------TFE-VNRIQRRLI-ENGVARVTDHAVVAVG  594 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGG------GTC-HHHHHHHHH-HTTCEEEESEEEEEEE
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccccc------chh-HHHHHHHHH-HCCCEEEcCcEEEEEE
Confidence            35799999  9999999999998 69999999988765311100      000 000000000 125555443 444555


Q ss_pred             cCe--EE---ecCCeEEeCCEEEEccCCCCCCC
Q 023957           89 ENE--VL---TAEGRRVVYDYLVIATGHKDPVP  116 (275)
Q Consensus        89 ~~~--v~---~~~~~~~~~~~lilatG~~~~~~  116 (275)
                      ...  +.   +.++.++.+|.+|+|+|..|...
T Consensus       595 ~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~  627 (690)
T 3k30_A          595 AGGVTVRDTYASIERELECDAVVMVTARLPREE  627 (690)
T ss_dssp             TTEEEEEETTTCCEEEEECSEEEEESCEEECCH
T ss_pred             CCeEEEEEccCCeEEEEECCEEEECCCCCCChH
Confidence            443  22   12456789999999999987753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.21  E-value=0.00085  Score=54.17  Aligned_cols=89  Identities=18%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCc---c--------cCcC----CcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI----GPKAGDKTRDWLISKKVDVKLGERVNLDSVS  193 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  193 (275)
                      +|..|+..|..+.  ..+.++.++++...   .        .+.+    ...+.+.+.+.+++.|++++. .++..++.+
T Consensus        24 ~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~  100 (319)
T 3cty_A           24 AGAAGFSAAVYAA--RSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVRSIKKT  100 (319)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEE
T ss_pred             cCHHHHHHHHHHH--hCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEe
Confidence            6777888888888  45788999987421   0        0111    123455667777888999988 688888765


Q ss_pred             CCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          194 EGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       194 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ++.+.+.+ ++.++.+|.+|+|+|..|.
T Consensus       101 ~~~~~v~~-~~~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A          101 QGGFDIET-NDDTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             TTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred             CCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence            55555665 5668999999999997664

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.18  E-value=0.0013  Score=52.80  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcc---c---Cc------C-CcchHHHHHHHHHhCC-CEEEcCceeeeecCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRL---L---EF------I-GPKAGDKTRDWLISKK-VDVKLGERVNLDSVSE  194 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~---~---~~------~-~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~  194 (275)
                      +|+.|+..|..++  ..+.++.++++...-   .   +.      . .+++.+...+.+.+.+ +.+.....+.....++
T Consensus        14 aGpAGlsAA~~la--r~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (304)
T 4fk1_A           14 AGPAGLNASLVLG--RARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQST   91 (304)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTT
T ss_pred             CCHHHHHHHHHHH--HCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCC
Confidence            5666777777776  458899999875321   0   00      1 1223334444444444 5555544444334444


Q ss_pred             CCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          195 GSDTYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      +...+.+.+|+++.+|.||+|||.+|..
T Consensus        92 ~~~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           92 GLFEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             SCEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             CcEEEEECCCCEEEeCEEEEccCCcccc
Confidence            5667888999999999999999987653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.18  E-value=0.00046  Score=61.04  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ..+|+|||||..|+.+|..|+ .|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            468999999999999999998 69999999987

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.14  E-value=0.0009  Score=55.97  Aligned_cols=92  Identities=18%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc----------CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|+.|+.+|..|+...++.+|+++++.+.....          ...+....-.+.+.+.|++++.+ +|+.|+.+.  ..
T Consensus        10 ~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~id~~~--~~   86 (401)
T 3vrd_B           10 GGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGIDPDK--KL   86 (401)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEEETTT--TE
T ss_pred             CcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEEEccC--cE
Confidence            677788888888766677899999987653211          11111111123355689999865 688887543  45


Q ss_pred             EEcCCCcEEeecEEEEcCCCCCCch
Q 023957          199 YLTSTGDTINADCHFLCTGKPVGSD  223 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~~~~  223 (275)
                      +.+.+|+++.+|.+|+|+|..++..
T Consensus        87 v~~~~g~~i~yd~LviAtG~~~~~~  111 (401)
T 3vrd_B           87 VKTAGGAEFAYDRCVVAPGIDLLYD  111 (401)
T ss_dssp             EEETTSCEEECSEEEECCCEEECGG
T ss_pred             EEecccceeecceeeeccCCccccC
Confidence            7788999999999999999887543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.08  E-value=0.00044  Score=59.74  Aligned_cols=91  Identities=22%  Similarity=0.388  Sum_probs=54.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCcccccc-ccccccCCccccccccccccccccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNG   77 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---------------~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   77 (275)
                      ..++|||||+.|+.+|.+|+               ...+|+|+|..+.+..... .+......        ...+  .++
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~--------~L~~--~GV  287 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQS--------HLEN--TSI  287 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHH--------HHHH--TTC
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHH--------HHHh--cce
Confidence            36999999999999998774               1368999999886531110 00000000        0000  145


Q ss_pred             EEEE-eeeeEeecCeEE----ecCC----eEEeCCEEEEccCCCCC
Q 023957           78 RIVA-SPAINITENEVL----TAEG----RRVVYDYLVIATGHKDP  114 (275)
Q Consensus        78 ~~~~-~~~~~~~~~~v~----~~~~----~~~~~~~lilatG~~~~  114 (275)
                      ++.. ..+..++...+.    ..++    .++++|.+|.|+|..|.
T Consensus       288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            5542 344455555332    2344    36899999999998765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.05  E-value=0.00064  Score=47.89  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+|+|+|.|..|...|..|. .|++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3468999999999999999998 6999999999764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.92  E-value=0.001  Score=47.71  Aligned_cols=34  Identities=35%  Similarity=0.577  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|+|+|..|..+|..|+ .|++|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999999999999999997 6999999998753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.92  E-value=0.0017  Score=55.36  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~   47 (275)
                      ..++|+|||||..|+-+|..+. .|. +|+++++.+..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3578999999999999998886 577 59999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.84  E-value=0.00097  Score=46.93  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+|+|+|+|..|..+|..|. .|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            358999999999999999998 6999999998653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.79  E-value=0.0012  Score=44.61  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      +++|+|+|+|..|..++..|. .| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999999987 68 8999999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.77  E-value=0.0034  Score=54.21  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~   46 (275)
                      ..++|+|||+|.+|.-++..|.   .+.+|+++-|.+.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            3578999999999999999986   3789999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.76  E-value=0.0015  Score=45.65  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=29.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|||+|..|...|..|. .|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999997 699999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.75  E-value=0.0046  Score=53.94  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc--------C-------------cCC----------------cchHHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------E-------------FIG----------------PKAGDKTR  171 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--------~-------------~~~----------------~~~~~~~~  171 (275)
                      +|..|+..|..|.+  .+.++.++++.+.+.        +             .+.                +++.+.+.
T Consensus        24 aG~aGl~aA~~L~~--~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~  101 (542)
T 1w4x_A           24 AGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYIN  101 (542)
T ss_dssp             CSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHHHHHHH
Confidence            67778888888884  477899998765321        0             001                11233444


Q ss_pred             HHHHhCC--CEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCC
Q 023957          172 DWLISKK--VDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       172 ~~~~~~g--v~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                      ...++.+  .+++.+++|.+++.+++  .+.|.+.+|+++.||.||+|+|..
T Consensus       102 ~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A          102 FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            4455555  67899999999876543  466888889889999999999964

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.69  E-value=0.0068  Score=53.61  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      +...+.+.+++ .|++++ +.+|+.+..+++.+ .|.+.+|..+.||.||+|+|..+.
T Consensus       126 ~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          126 YRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             HHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             HHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            44556677777 699995 57899987655544 577888888999999999998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.67  E-value=0.004  Score=55.82  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVT   39 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~   39 (275)
                      ..+|+|||||..|+.+|..|+ .|.+|+
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            478999999999999999997 465544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.65  E-value=0.0026  Score=45.40  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            357999999999999999997 699999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.59  E-value=0.0015  Score=60.88  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .+|+|||+|+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~  320 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS  320 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence            68999999999999999998 599999999987653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.50  E-value=0.0011  Score=59.90  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CCeEEEEc--CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIG--GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIG--gG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|||  ||..|+.+|..|+ .|.+|+++++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            46899999  9999999999998 699999999987

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.48  E-value=0.0033  Score=50.42  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |...+++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3334568999999999999999987 6999999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.46  E-value=0.0034  Score=51.04  Aligned_cols=38  Identities=26%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      |..++++|+|||+|..|.++|..|+ .|+ +|+++|.++.
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4444579999999999999999998 687 9999998764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.37  E-value=0.0088  Score=48.69  Aligned_cols=93  Identities=17%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc---------------------------C-----------CcchHHHH
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I-----------GPKAGDKT  170 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~-----------~~~~~~~~  170 (275)
                      +|..|+..|..+....++.++.++++.......                           +           ..++.+.+
T Consensus        87 gG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~d~~~~L  166 (344)
T 3jsk_A           87 AGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTV  166 (344)
T ss_dssp             CSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecHHHHHHHH
Confidence            777888888888854458899999876532100                           0           11233556


Q ss_pred             HHHHHh-CCCEEEcCceeeeecCCCC-------------------C-ceEEc------C--------CCcEEeecEEEEc
Q 023957          171 RDWLIS-KKVDVKLGERVNLDSVSEG-------------------S-DTYLT------S--------TGDTINADCHFLC  215 (275)
Q Consensus       171 ~~~~~~-~gv~i~~~~~v~~i~~~~~-------------------~-~~v~~------~--------~g~~~~~d~vv~a  215 (275)
                      .+.+++ .|++++.++.+.++..+++                   . ..+..      .        +..++.++.||.|
T Consensus       167 ~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~A  246 (344)
T 3jsk_A          167 LSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIIST  246 (344)
T ss_dssp             HHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEEC
T ss_pred             HHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEEC
Confidence            666666 5999999999988865441                   1 12222      1        2347999999999


Q ss_pred             CCCCCC
Q 023957          216 TGKPVG  221 (275)
Q Consensus       216 ~G~~~~  221 (275)
                      +|....
T Consensus       247 TG~~s~  252 (344)
T 3jsk_A          247 TGHDGP  252 (344)
T ss_dssp             CCSSSS
T ss_pred             CCCCch
Confidence            997653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.34  E-value=0.0038  Score=52.46  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ..++|.|||.|..|+..|..|++|++|+++|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQNHEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHH
Confidence            34689999999999999998878999999998753

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.33  E-value=0.0036  Score=53.27  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||.|.+|+++|..|+ +|++|++.|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3579999999999999999887 799999999865

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.31  E-value=0.0035  Score=43.91  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.+|+|+|+|..|..+|..|. .|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999999999999999997 699999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.28  E-value=0.017  Score=50.90  Aligned_cols=56  Identities=14%  Similarity=0.053  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                      +.+.+.+.+++ .|++++ +.+|+++..+++.+ .|.+.+|..+.||.||+|+|..++.
T Consensus       125 ~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          125 YREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             HHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             HHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence            34556677777 599995 67899987655554 4788889899999999999986543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.0053  Score=45.21  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~   46 (275)
                      ..+|+|+|+|..|..+|..|. . |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            458999999999999999997 7 999999998763

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.16  E-value=0.0063  Score=48.30  Aligned_cols=34  Identities=32%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|+ .|++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            468999999999999999987 7999999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.13  E-value=0.0032  Score=47.86  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6999999999999999997 7999999998763

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.13  E-value=0.0071  Score=46.01  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.|+|||||..|...|..|. .|.+|+|++++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4579999999999999999887 6999999997643

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.11  E-value=0.0066  Score=49.86  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |+...++|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4444578999999999999999998 6999999998753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.10  E-value=0.0036  Score=53.08  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|||.|.+|+++|..|+ +|++|+++|.+..
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            368999999999999998887 7999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.07  E-value=0.0033  Score=53.62  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|+|+|-.|...|..|. .|++|++||+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            468999999999999999997 6999999998864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.07  E-value=0.0066  Score=52.26  Aligned_cols=90  Identities=18%  Similarity=0.082  Sum_probs=61.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc----------CCcchH---HHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAG---DKTRDWLISKKVDVKLGERVNLDSVSEG  195 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~gv~i~~~~~v~~i~~~~~  195 (275)
                      +|..|+..|..+..  . .+++++++.+.+...          +.....   ..+.+.+ +.|++++.++.+..+..+++
T Consensus       116 gG~aGl~aA~~L~~--~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~  191 (493)
T 1y56_A          116 GGPAGIGAALELQQ--Y-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGVFDKGE  191 (493)
T ss_dssp             CSHHHHHHHHHHTT--T-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCCEECSS
T ss_pred             ccHHHHHHHHHHHh--c-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCc
Confidence            88899999999984  3 899999987654210          111111   2222223 46999999999998876655


Q ss_pred             CceEEc-CCCc--EEeecEEEEcCCCCCCc
Q 023957          196 SDTYLT-STGD--TINADCHFLCTGKPVGS  222 (275)
Q Consensus       196 ~~~v~~-~~g~--~~~~d~vv~a~G~~~~~  222 (275)
                      .+.+.. .+++  .+.+|.+|+|+|..|..
T Consensus       192 ~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          192 YFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             SEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            544433 4454  68999999999987643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.04  E-value=0.0074  Score=50.13  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999999999999998 6999999998874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.94  E-value=0.0092  Score=48.20  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      +++|.|||+|..|.+.|..|. .|+ +|+++|+++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            468999999999999999987 687 9999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.90  E-value=0.0085  Score=48.46  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|||+|-.|.+.|..|+ .|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            58999999999999999998 699999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.88  E-value=0.0086  Score=48.58  Aligned_cols=35  Identities=26%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~-aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+++|.|||.|.+|++ +|..|. +|++|++.|++..
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3578999999999997 666776 7999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.87  E-value=0.008  Score=49.49  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|+++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999999999999998 6999999998763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.84  E-value=0.0092  Score=48.19  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      |+..+.+|+|||+|..|.++|+.|. .+.  +++++|.+.
T Consensus         3 m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            3 MVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             ----CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3334578999999999999999997 565  899999865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.83  E-value=0.01  Score=47.74  Aligned_cols=35  Identities=40%  Similarity=0.481  Sum_probs=30.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ....+|.|||+|..|.++|+.|. .|+ +++++|.++
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            34578999999999999999987 688 999999873

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.79  E-value=0.0057  Score=48.08  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.|+|||||-.|...|..|. .|++|+|++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3578999999999999999887 699999999754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.77  E-value=0.0084  Score=48.29  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+|.|||+|..|...|..++ .|++|+++|.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            58999999999999998887 7999999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.76  E-value=0.01  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||.|..|...|..|. .|++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            468999999999999999997 6999999998774

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.74  E-value=0.013  Score=47.34  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=29.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      +++|.|||+|..|..+|..|. .|+ +|+++|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            468999999999999999987 677 8999998753

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.69  E-value=0.0094  Score=48.00  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|||+|-.|.+.|..|. .|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            58999999999999999998 699999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.66  E-value=0.013  Score=47.41  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      +....+|.|||+|..|.++|+.|. .|+  +++++|.+.
T Consensus         2 ~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            344578999999999999999987 565  899999854

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.64  E-value=0.0097  Score=50.63  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS   53 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~   53 (275)
                      ..+||+|||||++||+||+.|+ .|++|+|+|+++.+|+....
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            4589999999999999999998 69999999999999876443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.62  E-value=0.013  Score=47.06  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            34578999999999999999997 6999999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.60  E-value=0.013  Score=47.34  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      +++|+|||+|..|.+.|..|. .|+  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            358999999999999999997 687  999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.58  E-value=0.013  Score=47.14  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            48999999999999999997 699999999865

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.54  E-value=0.0096  Score=41.92  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|||+|..|...|..|. .|.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            578999999999999999987 688899999865

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.49  E-value=0.015  Score=47.92  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |++|+|+|||..|..+|+.++ .|++|+++|.++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            478999999999999999998 6999999998764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.49  E-value=0.009  Score=48.27  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      ++++++|.|||.|..|...|..|. .| ++|+++++++
T Consensus        21 ~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           21 QSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             HTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            344578999999999999999997 69 9999999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.39  E-value=0.02  Score=46.48  Aligned_cols=33  Identities=36%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ++|.|||+|..|.++|..|+ .|+ +|+++|.++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            58999999999999999887 687 9999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.38  E-value=0.021  Score=43.09  Aligned_cols=34  Identities=18%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999997 6999999998764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.37  E-value=0.021  Score=45.98  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      .++|.|||.|..|.+.|..|+ .|+  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            368999999999999999997 688  999999876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.37  E-value=0.018  Score=45.58  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            6999999999999999997 6999999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.36  E-value=0.017  Score=48.26  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999987 6999999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.31  E-value=0.021  Score=47.45  Aligned_cols=35  Identities=31%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+|+|+|+|.+|+.+|..++ .|.+|+++|+++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999999999999998 6999999998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.31  E-value=0.018  Score=47.18  Aligned_cols=32  Identities=28%  Similarity=0.248  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||+|..|...|..|. .|++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999997 699999999865

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.30  E-value=0.018  Score=48.89  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||.|..|+..|..|+ .|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            58999999999999999998 699999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.30  E-value=0.012  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=28.5

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-c-----C-CcEEEEcC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-F-----S-ADVTLIDP   43 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~-----g-~~v~vie~   43 (275)
                      |++++++|.|||+|..|.+.|..|. .     | ++|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3334468999999999999999987 6     8 99999998

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.25  E-value=0.013  Score=46.66  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|||+|-.|.+.|..|. .|++|++++|++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            58999999999999999998 699999999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.21  E-value=0.023  Score=45.75  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|. .|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            468999999999999999987 6999999998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.21  E-value=0.023  Score=45.65  Aligned_cols=32  Identities=38%  Similarity=0.566  Sum_probs=28.4

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ++|.|||+|..|...|..|. .|+ +++++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            58999999999999999987 575 899999865

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.18  E-value=0.019  Score=47.29  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~   45 (275)
                      |...+++|+|+|+|..|-.+|..|++.++|++.+++.
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~   48 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN   48 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH
Confidence            4445678999999999999999999888999988754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.16  E-value=0.021  Score=48.73  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c-CC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F-SA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~-g~-~v~vie~~~~   46 (275)
                      .++|.|||+|..|+..|..|+ . |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            468999999999999999997 7 99 9999998876

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.15  E-value=0.021  Score=48.87  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|.|||.|..|+..|..|+ .|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            368999999999999999998 699999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.15  E-value=0.022  Score=45.68  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~   45 (275)
                      ++|+|||+|-.|.+.|..|..|++|++++|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            58999999999999998888888999999875

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=95.13  E-value=0.017  Score=49.38  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~   51 (275)
                      ..+||+|||||++|+++|+.|+ .|+ +|+|+|+++.+|+.+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM   44 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCce
Confidence            3579999999999999999998 688 899999999887654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.09  E-value=0.014  Score=49.68  Aligned_cols=83  Identities=12%  Similarity=-0.019  Sum_probs=58.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc--------CcC--CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EFI--GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|+.|+.+|..+....++.+++++++.+.+.        +.+  ..++...+.+.+++.|++++.++.+.      .  .
T Consensus        14 ~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~------~--~   85 (460)
T 1cjc_A           14 SGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG------R--D   85 (460)
T ss_dssp             CSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT------T--T
T ss_pred             cCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe------e--E
Confidence            6778889998888644458999999887543        111  12455666777788899999987762      1  1


Q ss_pred             EEcCCCcEEeecEEEEcCCCCC
Q 023957          199 YLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      +.+.+. .+.+|.||+|+|..|
T Consensus        86 V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           86 VTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             BCHHHH-HHHSSEEEECCCCCE
T ss_pred             EEeccc-eEEcCEEEEecCcCC
Confidence            333333 378999999999874

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.07  E-value=0.025  Score=45.97  Aligned_cols=31  Identities=16%  Similarity=0.476  Sum_probs=28.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ++|+|||+|-.|.+.|..|. .|++|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            58999999999999999998 69999999985

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.04  E-value=0.024  Score=45.46  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ++|+|||+|..|.+.|..|. .|+  +|+++|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            37999999999999999987 677  899999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.04  E-value=0.026  Score=44.89  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      .+++|.|||+|..|...|..|+.|++|+++|+++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~laaG~~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIASKHEVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHHcCCEEEEEECCHH
Confidence            46899999999999999977668899999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.03  E-value=0.028  Score=47.37  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.+.+|.|||.|..||.+|..|+ .|++|+.+|-++
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34579999999999999999998 799999999764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.98  E-value=0.027  Score=45.05  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            468999999999999999997 6999999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.96  E-value=0.019  Score=48.08  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|+|||.|..|...|..|. .|++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            357999999999999999998 6999999998864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.96  E-value=0.027  Score=48.19  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            458999999999999999987 6999999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.95  E-value=0.033  Score=44.13  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|.|||+ |..|.+.|..|. .|++|+++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            468999999 999999999997 699999999865

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.95  E-value=0.024  Score=46.69  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|+|+|.+|+.++..|+ .|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            368999999999999999998 699999999865

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.94  E-value=0.032  Score=47.25  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|+ .|++|+++|+++.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            368999999999999999987 6999999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.84  E-value=0.029  Score=44.28  Aligned_cols=34  Identities=9%  Similarity=0.151  Sum_probs=30.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|+|.|+|..|...+..|. +|++|+++.|++.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            368999999999999999987 7999999998653

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.83  E-value=0.026  Score=45.38  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      .+++|.|||.|..|...|..|. .|+ +|+++++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3578999999999999999997 699 999999863

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.82  E-value=0.029  Score=45.07  Aligned_cols=32  Identities=31%  Similarity=0.451  Sum_probs=28.5

Q ss_pred             eEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~   46 (275)
                      +|+|||+|..|.+.|..|+ .  +++|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            7999999999999999987 3  789999999764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.79  E-value=0.026  Score=42.82  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|+|.|| |..|...+..|. +|++|+++.|++.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            468999996 999999999987 7999999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.76  E-value=0.032  Score=44.64  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      +.+|.|||+|..|..+|+.|. +|+  +++|+|.++.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            478999999999999998887 677  8999998763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.76  E-value=0.03  Score=46.14  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      .-+|+|+|||.||+.+|..|. .|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            468999999999999998886 688 899999974

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.75  E-value=0.037  Score=47.19  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999999999999999997 6999999998763

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.64  E-value=0.033  Score=45.76  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~   44 (275)
                      ...+|+|+|||-+|..+|..|. .|. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3579999999999999999887 687 79999997

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.64  E-value=0.014  Score=49.72  Aligned_cols=82  Identities=9%  Similarity=-0.051  Sum_probs=57.5

Q ss_pred             CCcchhhHHHHHhh-hCC----CCEEEEEeCCCcccC----------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957          129 GGPTGVELAGEIAV-DFP----EKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  193 (275)
Q Consensus       129 ~g~~~~~~a~~l~~-~~~----~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  193 (275)
                      +|+.|+..|..+.. ..+    +.+++++++.+.+..          ....++...+.+.+++.|++++.+..+   .  
T Consensus        11 ~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v~v---~--   85 (456)
T 1lqt_A           11 SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVV---G--   85 (456)
T ss_dssp             CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCCB---T--
T ss_pred             cCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeEEE---C--
Confidence            67788888888875 333    789999998865421          112346666777788889999988553   1  


Q ss_pred             CCCceEEcCCCcEEeecEEEEcCCCC
Q 023957          194 EGSDTYLTSTGDTINADCHFLCTGKP  219 (275)
Q Consensus       194 ~~~~~v~~~~g~~~~~d~vv~a~G~~  219 (275)
                       .  .+.+.++ .+.+|.||+|+|..
T Consensus        86 -~--~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           86 -E--HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             -T--TBCHHHH-HHHSSEEEECCCCC
T ss_pred             -C--EEEECCC-eEeCCEEEEeeCCC
Confidence             1  2444445 37899999999986

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.62  E-value=0.036  Score=45.77  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|+|+|..|+.+|..|+ .|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            478999999999999999998 699999999865

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.62  E-value=0.044  Score=44.25  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      +.+|.|||+|..|.++|..|. .++ +++++|.++.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            468999999999999999987 577 9999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.56  E-value=0.03  Score=44.43  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            47999999999999999997 6999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.52  E-value=0.039  Score=43.78  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            57999999999999999997 6999999998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.52  E-value=0.022  Score=43.35  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEE-EcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTL-IDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~v-ie~~~~   46 (275)
                      +++|.|||+|..|.+.|..|. .|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            368999999999999999997 6999998 887653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.52  E-value=0.023  Score=43.53  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+|+|+|+|..|...|..|. .|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3468999999999999999997 688 999998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.50  E-value=0.016  Score=54.59  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             CCcchhhHHHHHhhhCCCC-EEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|+.|+..|..|+.  .|. +++++++.+.+..         ....+..+...+.+++.|++++.++.+..     +  .
T Consensus       195 gGpAGl~aA~~L~~--~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-----~--~  265 (1025)
T 1gte_A          195 AGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE-----N--E  265 (1025)
T ss_dssp             CSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-----T--S
T ss_pred             ccHHHHHHHHHHHh--cCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-----c--e
Confidence            78889999999984  466 7999998765421         12234455556778889999999987742     1  2


Q ss_pred             EEcCCCcEEeecEEEEcCCC-CCC
Q 023957          199 YLTSTGDTINADCHFLCTGK-PVG  221 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~-~~~  221 (275)
                      +.+.+++++.+|.||+|+|. .|.
T Consensus       266 v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          266 ITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             BCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             EEhhhcCccCCCEEEEecCCCCCC
Confidence            33444555789999999998 464

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.50  E-value=0.038  Score=46.19  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             eEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~   45 (275)
                      +|.|||.|..|+..|..|.+|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999999999999987799999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.48  E-value=0.04  Score=45.58  Aligned_cols=33  Identities=39%  Similarity=0.490  Sum_probs=29.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|+|||+|..|+.+|..|+ .|.+|+++|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            578999999999999999998 699999999865

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.48  E-value=0.037  Score=47.26  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=28.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~   45 (275)
                      ++|.|||.|..|+..|..|+ .  |++|+++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            58999999999999999987 5  79999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.47  E-value=0.043  Score=45.05  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            468999999999999999997 6999999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.46  E-value=0.041  Score=41.64  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|.|||+|..|...|..|. .|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999999999999999987 689999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.42  E-value=0.044  Score=42.37  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3578999999999999999997 6999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.40  E-value=0.043  Score=42.57  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            368999999999999999998 586 899999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.34  E-value=0.057  Score=42.32  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++++|||+|-+|-++|+.|. .|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999998 6899999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.32  E-value=0.038  Score=46.71  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.|||+|..|+..|..|+ .|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999999999997 699999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.32  E-value=0.054  Score=42.72  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|.|+|..|...+..|. +|++|+++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57999999999999999987 7999999998754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.31  E-value=0.057  Score=43.55  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      +.+|.|||+|..|.++|..|. .++ +++++|.++.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            368999999999999999887 566 9999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.26  E-value=0.045  Score=43.93  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      ++|.|||+|..|.+.|..|. .|  .+|+++|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            47999999999999999997 57  6899999865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.25  E-value=0.048  Score=46.14  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      -++.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            58999999999999999998 6999999998765

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.22  E-value=0.047  Score=43.54  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            468999999999999999987 699999999865

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.22  E-value=0.056  Score=42.48  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.++|+|+|-+|.++|..|. .|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            468999999999999999997 689999998864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.22  E-value=0.042  Score=45.22  Aligned_cols=31  Identities=29%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.|||+|..|.+.|..|. .|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            8999999999999999997 689999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.19  E-value=0.047  Score=41.70  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|.|| |..|..++..|. +|++|+++.|++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3578999998 999999999987 7999999998753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.15  E-value=0.063  Score=43.01  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999997 6999999998763

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.15  E-value=0.053  Score=44.02  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+|.|||+|..|.+.|..|. .|++|+++++.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            468999999999999999997 699999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.14  E-value=0.069  Score=43.14  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ...+|.|||+|..|.++|+.|. .|+  +++++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3478999999999999999987 566  899999855

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.08  E-value=0.074  Score=42.42  Aligned_cols=34  Identities=24%  Similarity=0.550  Sum_probs=30.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.||| .|..|.+.|..|+ .|++|+++++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            35899999 9999999999998 6999999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.07  E-value=0.056  Score=43.62  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            468999999999999999997 6999999998753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.06  E-value=0.05  Score=43.89  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ++|.|||+|..|.+.|..|. .|+  +|+++|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            37999999999999999987 688  999999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.06  E-value=0.055  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC----CcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS----ADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g----~~v~vie~~~~   46 (275)
                      +++|.|||+|..|.+.|..|. .|    ++|+++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            357999999999999999987 57    79999998763

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.05  E-value=0.053  Score=46.47  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~   45 (275)
                      +++|.|||.|..|+..|..|+ .  |++|+++|+++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            358999999999999999997 4  78999999754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=94.02  E-value=0.068  Score=44.19  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...++|+|||+|..|..++..++ .|++|+++|..+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            34578999999999999999998 6999999997654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.97  E-value=0.058  Score=43.47  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=28.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|||+|-.|.+.|..|+ .|++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999998 69999999 654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.96  E-value=0.053  Score=43.89  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDP   43 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~   43 (275)
                      +|.|||+|..|.+.|..|. .|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            6999999999999999997 6999999998

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.96  E-value=0.046  Score=46.49  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|||||..|...|..|. .|.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            578999999999999999887 699999999864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.93  E-value=0.046  Score=44.35  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCC-------cEEEEcCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSA-------DVTLIDPK   44 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~-------~v~vie~~   44 (275)
                      .+++|+|||| |..|.+.+..|. .+.       ++.++|..
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            3468999998 999999999986 454       79999976

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.92  E-value=0.023  Score=43.45  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      .++|.|||.|..|.+.|..|+ .|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            458999999999999999998 69999999884

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.90  E-value=0.09  Score=46.55  Aligned_cols=41  Identities=29%  Similarity=0.562  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~   52 (275)
                      +.|||+|||+|..|..+|..|+ .|.+|++|||++++|+.|.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            3699999999999999999998 6999999999999997654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.86  E-value=0.06  Score=42.86  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=28.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ++|.|||+|..|.++|+.|. .++  +++++|.++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            37999999999999999987 566  899999866

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.84  E-value=0.073  Score=43.00  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=28.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ..+|+|||+|..|.++|+.|. .+.  +++++|.+.
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            468999999999999999987 565  899999854

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=93.84  E-value=0.05  Score=46.41  Aligned_cols=40  Identities=28%  Similarity=0.463  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..++||+|||||++||+||+.|+ .|++|+|+|+++.+|+.
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr   54 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA   54 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce
Confidence            34689999999999999999998 69999999999988754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.82  E-value=0.064  Score=43.10  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      ++|.|||+|..|.++|+.|. .+.  +++++|.++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            37999999999999999987 565  8999998763

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.81  E-value=0.058  Score=43.80  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.|+|.|| |..|..++..|. +|++|+++++.+.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4578999999 999999999987 7999999998763

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.78  E-value=0.075  Score=42.38  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      .++|+|||+|.+|.++|..|. .|. +|+|++|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            468999999999999999997 687 899999864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.77  E-value=0.073  Score=42.86  Aligned_cols=33  Identities=39%  Similarity=0.590  Sum_probs=28.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ..+|+|||+|..|.+.|+.|+ .+.  +++++|.++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            468999999999999999887 453  799999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.77  E-value=0.099  Score=43.77  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~~~~~~   51 (275)
                      .++||+|||||++||+||++|+ .| ++|+|+|+++.+|+..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~   46 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKC   46 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcc
Confidence            4589999999999999999998 68 8999999999887543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.74  E-value=0.069  Score=43.04  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=28.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ++.+|+|||+|..|.++|+.|. .+.  +++++|.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3468999999999999999987 454  799999854

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.72  E-value=0.055  Score=44.72  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC-------CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS-------ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g-------~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            57999999999999999987 57       99999998765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.72  E-value=0.076  Score=45.20  Aligned_cols=35  Identities=31%  Similarity=0.557  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ..++|+|+|||-.|..+|..|...++|.+||++..
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~  268 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQ  268 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHH
Confidence            34789999999999999999998899999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.69  E-value=0.07  Score=40.04  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=28.0

Q ss_pred             eEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|+||| +|..|...|..|. .|++|+++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 9999999999987 699999999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.68  E-value=0.079  Score=42.68  Aligned_cols=33  Identities=39%  Similarity=0.537  Sum_probs=28.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      +.+|+|||+|..|.++|+.|. .+  .++.++|.++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            469999999999999999887 45  4799999764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.67  E-value=0.074  Score=39.94  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             eEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|+|+|| |..|..++..|. +|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 999999999987 799999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.66  E-value=0.08  Score=41.74  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ++|.|||+|..|.+.|..|. .|+  +|+++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            47999999999999999997 587  899999865

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.65  E-value=0.081  Score=43.93  Aligned_cols=35  Identities=26%  Similarity=0.573  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||+|..|..+|..++ .|++|+++|..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            4578999999999999999998 6999999987653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.63  E-value=0.076  Score=42.41  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|.|||+|..|..+|..|+ .|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999999999999998 699999999865

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.60  E-value=0.072  Score=42.27  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=29.5

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|.|| |+.|...+..|. +|++|+++.|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47999999 999999999987 7999999988764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.57  E-value=0.078  Score=42.18  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|.|||.|..|..+|..|+ .|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3578999999999999999998 699999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.56  E-value=0.069  Score=42.49  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|...|..|. .|++|+++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            48999999999999999987 6899999998653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.56  E-value=0.094  Score=42.44  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      ...+|.|||+|..|.++|+.|. +++  +++++|.+.
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            4579999999999999999887 565  899999864

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.54  E-value=0.1  Score=43.84  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|+|+|..|..++..++ .|++|+++|..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3578999999999999999998 6999999997654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=93.53  E-value=0.056  Score=41.34  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      +++.|+|.|| |..|..++..|. .| ++|+++.|++
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            3578999995 999999999987 68 8999998865

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.49  E-value=0.065  Score=44.76  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.|+|+|.|..|..+|..|+ .|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4579999999999999999998 699999999865

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.48  E-value=0.099  Score=42.54  Aligned_cols=33  Identities=24%  Similarity=0.568  Sum_probs=28.0

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      +.+|+|||+ |..|.++|+.+. .|  .+++++|.+.
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            468999998 999999998886 56  4899999854

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.48  E-value=0.057  Score=45.08  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=26.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c-CCcEEEEc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F-SADVTLID   42 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie   42 (275)
                      ++|.|||+|..|.+.|..|+ . |++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            48999999999999999995 4 99999999

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.40  E-value=0.1  Score=44.35  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.|+|+|+|..|.++|..|+ .|.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4578999999999999999998 699999999865

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.39  E-value=0.1  Score=40.30  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC----cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA----DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~----~v~vie~~~~   46 (275)
                      ++|.|||.|..|.+.|..|. .|+    +|+++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            57999999999999999987 687    9999998753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.39  E-value=0.11  Score=41.97  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++++.|+|.|| |..|..++..|. +|++|+++++...
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            34568999996 999999999987 7999999998654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.32  E-value=0.092  Score=41.30  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|.|||+|..|.+.|..|. .|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6999999999999999987 689999999865

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.31  E-value=0.069  Score=45.92  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             cCCCCeEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCC
Q 023957           10 EGKNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~-aA~~L~-~g~~v~vie~~~   45 (275)
                      +...++|.|||.|-+|++ +|..|. +|++|++.|.+.
T Consensus        19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           19 MRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             ---CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             hccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            344579999999999998 587777 799999999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.28  E-value=0.098  Score=47.21  Aligned_cols=34  Identities=38%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            467999999999999999997 6999999998764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.27  E-value=0.093  Score=42.04  Aligned_cols=35  Identities=14%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++++|+|+|| |..|...+..|. .|++|+++.|++.
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3458999997 999999999887 7999999998764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.26  E-value=0.1  Score=40.54  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||.|..|...|..|. .|++|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            58999999999999999987 588999999865

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.25  E-value=0.11  Score=42.07  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|.|| |..|...+..|. +|++|+++++.+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            48999997 999999999987 7999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.22  E-value=0.065  Score=42.14  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++++|+|+|-+|.++|..|. .|.+|+|++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999999999997 689999999874

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.19  E-value=0.11  Score=44.44  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ...+.|+|||.|..|..+|..|+ .|.+|+++|+.+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34578999999999999999998 699999999865

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.18  E-value=0.087  Score=41.61  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             CeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|...|..|.+|++|+++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            479999999999999988744999999998753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=93.17  E-value=0.073  Score=43.07  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCC-------cEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSA-------DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~-------~v~vie~~~   45 (275)
                      +++|+|+|| |+.|..++..|. +|+       +|+++|+.+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            358999998 999999999987 565       899999754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.12  E-value=0.099  Score=39.40  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             eEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +|+|.|| |..|..++..|. +|++|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            6999998 999999999987 799999998865

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=93.12  E-value=0.11  Score=42.97  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |.++.++|+|+|+|..|...+..++ .|++|++++..+.
T Consensus         7 m~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            4445679999999999999999998 6999999987653

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.12  E-value=0.12  Score=41.23  Aligned_cols=34  Identities=29%  Similarity=0.591  Sum_probs=30.5

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|+|.|| |..|..++..|. +|++|+++++...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999999 999999999987 7999999998764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.10  E-value=0.11  Score=44.50  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            358999999999999999997 6999999998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.09  E-value=0.11  Score=40.45  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC----CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS----ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g----~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|    ++|+++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            47999999999999999987 57    79999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.08  E-value=0.081  Score=41.68  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      .++++|+|+|-+|.++|+.|. .|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            468999999999999999998 688 8999998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.07  E-value=0.097  Score=40.74  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             eEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      +|.|||+|..|.+.|..|. .| ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999987 68 9999999865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.06  E-value=0.11  Score=38.42  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|+|| |..|..++..|. +|++|+++.|++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            58999999 999999999987 799999999865

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=93.02  E-value=0.1  Score=43.55  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ...+|+|||+|..|..+|..|+ .|. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4578999999999999999998 688 899999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.97  E-value=0.11  Score=44.57  Aligned_cols=34  Identities=15%  Similarity=0.106  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.|||.|..|...|..|. .|++|+++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368999999999999999997 6999999998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.96  E-value=0.065  Score=43.80  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC-------CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS-------ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g-------~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            58999999999999999997 57       89999998765

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.95  E-value=0.097  Score=45.81  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+++|+|+|..|...|..|. .|++|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            68999999999999999998 6999999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.95  E-value=0.14  Score=41.35  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.|+|.|| |..|..++..|. +|++|+++++..
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            468999998 999999999987 699999999854

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.94  E-value=0.1  Score=41.43  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|.|||.|..|...|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6999999999999999987 6999999998753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=92.92  E-value=0.12  Score=42.67  Aligned_cols=81  Identities=16%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-----------------------Cc------------------------
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----------------------EF------------------------  161 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-----------------------~~------------------------  161 (275)
                      +|..|+.+|..|....+|.+++++++.+...                       ..                        
T Consensus         8 aG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   87 (381)
T 3c4a_A            8 AGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMS   87 (381)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESSSEEECC
T ss_pred             CCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCCeeEEec
Confidence            6777888888887654578888888754330                       00                        


Q ss_pred             --------CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          162 --------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       162 --------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                              ....+.+.+.+.+++.|++++.+++|++++..           +.+.+|.||.|.|..+
T Consensus        88 ~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           88 TGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             CCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred             CCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence                    00124556677777889999999999988642           1257899999999654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.90  E-value=0.11  Score=40.97  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|||+|-+|.+.|..|. .|.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            368999999999999999997 588999999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=92.90  E-value=0.11  Score=41.59  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG-~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++++|||+| +.|..+|..|. .|.+|++++++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            35799999999 67999998887 699999998864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.87  E-value=0.083  Score=42.94  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++++|+|.|| |..|..++..|. +|++|+++++...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4579999996 999999999986 7999999998654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.77  E-value=0.14  Score=40.45  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..++++|+|+|-+|-++|+.|. .|. +|+|++|+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3578999999999999999997 688 699998865

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=92.77  E-value=0.15  Score=40.29  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~---~v~vie~~~~   46 (275)
                      ++|.|||+|..|.+.|..|. .|+   +|+++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            68999999999999999987 688   8999998764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.76  E-value=0.14  Score=41.58  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.|||.|..|-+.|..|+ .|++|+++|+++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357999999999999999998 6999999998753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.73  E-value=0.13  Score=41.30  Aligned_cols=34  Identities=15%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..++++|+|+|-+|-++|+.|. .|. +|+|+.|.+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3578999999999999999998 688 899999873

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.72  E-value=0.076  Score=42.12  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||+|..|...|..|. .|++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            58999999999999999987 699999998 54

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.69  E-value=0.14  Score=40.65  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=29.3

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++.|+|+|| |..|...+..|. +|++|+++.|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            357999998 999999999887 799999999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.67  E-value=0.14  Score=41.37  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=28.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      .+.+|+|||+|..|.++|+.|. .+.  +++++|.+.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3468999999999999999887 444  799999854

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=92.59  E-value=0.13  Score=40.66  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..++++|+|+|-+|-++|+.|. .|. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3578999999999999999998 687 899998765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.55  E-value=0.1  Score=41.64  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+|-+||-|..|...|..|. .|++|+++|+++.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            358999999999999999997 7999999998764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=92.55  E-value=0.14  Score=42.26  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+++|+|.|| |..|..++..|. +|++|+++++...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4578999999 999999999987 7999999998653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=92.49  E-value=0.17  Score=39.79  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..++++|+|+|-+|.++|+.|. .|. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3578999999999999999997 685 899998865

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=92.49  E-value=0.086  Score=42.66  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           13 NKRVVVIG-GGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIG-gG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      +++|+||| +|..|.+.+..|. .|  .+++++|.++.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~   45 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA   45 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            35899999 7999999999987 56  68999997653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.45  E-value=0.16  Score=41.74  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|+|.|..|..+|..|. .|.+|++.|++.
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~  206 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK  206 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999999999999998 699999998753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.41  E-value=0.15  Score=40.34  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.++|+|+|-+|.++|..|. .| +|++++|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            468999999999999999997 69 999998864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=92.41  E-value=0.12  Score=41.61  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=27.5

Q ss_pred             eEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           15 RVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      +|+|||| |..|.++|..|. .+  .+++++|.++
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999987 45  5899999876

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.36  E-value=0.14  Score=40.71  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      ++|.|||+|..|.++|+.|. ++  -++.|+|.++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            47999999999999999987 44  3799999765

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.36  E-value=0.16  Score=41.21  Aligned_cols=33  Identities=33%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|.+.|..|+ .|++|+++++++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            57999999999999999997 6899999998753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.21  E-value=0.15  Score=43.71  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            368999999999999999997 6999999998753

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=92.20  E-value=0.17  Score=39.99  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ..++++|+|+|-+|-++|+.|. .|. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            3578999999999999999997 685 899998865

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.19  E-value=0.18  Score=40.21  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|+|+|| |..|..++..|. +|++|+++.|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            357999997 999999999886 799999999875

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=92.17  E-value=0.15  Score=40.65  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|+|.|| |..|..++..|. +|++|+++++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            57999998 999999999987 699999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.004
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	2e-05
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.002
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-04
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	7e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	4e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-04
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	5e-04
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	7e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.001
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.001
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	0.003
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	0.004
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +   + S   +      +     +
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 71  TDYLVNGRIVASP---AINITENEVLTAEGRRVVYDYLVIATGHK 112
                +G  V       I+  +  V TA G    YD  V+A G +
Sbjct: 63  DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIE 107

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 13/146 (8%)

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EFIGPKAGDKTRDWLISKKVDV 181
           GG  G   A  I +  P  +VTL+   +             G +  +  +      +   
Sbjct: 10  GGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHG 69

Query: 182 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK------DSLD 235
                 +   +        T+ G     D   +  G  +  D ++    K       + D
Sbjct: 70  IQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND 129

Query: 236 THGMLMVDENLRVKGQKNIFAIGDIT 261
                +  +       K I  IGD +
Sbjct: 130 AGWCPVDIKTFESSIHKGIHVIGDAS 155

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI 68
           ++ + K VV+IG G+ G               +            L   VE   G  +  
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDE 60

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRV 100
                     IVASP I +    +  A    +
Sbjct: 61  WLMAA---DLIVASPGIALAHPSLSAAADAGI 89

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW 51
          +VV++G G  G  +AK L  + +VT+ID +     + 
Sbjct: 2  KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSK 38

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 8/141 (5%)

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----EFIGPKAGDKTRDWLISKKVDVKLG 184
            GP G ELA +++  +   +VT++ K               AG   R+ L    +D    
Sbjct: 8   NGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRK 64

Query: 185 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 244
             + +    E                     T          D   +  + T   +++D+
Sbjct: 65  RGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDD 124

Query: 245 NLRVKGQKNIFAIGDITDIRV 265
           N R    K+++AIGD  +   
Sbjct: 125 NFRTS-AKDVYAIGDCAEYSG 144

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-----QFSADVTLIDPKEYFEITWA--SL 54
           + R  ++   + K + +IGGG  GS +A +L         +V  + P++          L
Sbjct: 26  DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYL 85

Query: 55  RAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                    +  V           IV S  ++  +  +   +GR+V  D++V A G
Sbjct: 86  SNWTMEKVRREGVKVMP-----NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 129 GGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGE 185
           GG  G ELA  +         +V  +      +  I P    + T + +  + V V    
Sbjct: 45  GGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA 104

Query: 186 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 217
            V    VS G        G  +  D      G
Sbjct: 105 IVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 9/145 (6%)

Query: 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR-------LLEFIGPKAGDKTRDWLISKKVDV 181
            G   V    E+     +  +T+V   +        L +        +       +  +V
Sbjct: 11  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEV 70

Query: 182 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS-LDTHGML 240
           +    V   S    + T   S G T+      L TG    +    D + + + L     +
Sbjct: 71  EWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGI 130

Query: 241 MVDENLRVKGQKNIFAIGDITDIRV 265
            VD   R     +++A+GD+T  R 
Sbjct: 131 FVDAYGR-TTCPDVYALGDVTRQRN 154

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 14  KRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
             VVV+G G+A       L Q      +    +  E  +       +      +     D
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 73  YLVNGRI-----VASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ 127
                 +     V + + +   + V  ++GR + Y  LV+ATG     P+         +
Sbjct: 64  CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA---APRAVLANDALAR 120

Query: 128 AGGPTGVELAGEIAVD 143
           A    G+     I VD
Sbjct: 121 A---AGLACDDGIFVD 133

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPK 44
          K+KR+++IGGG V  + + K +     +TL+ P 
Sbjct: 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITW--ASLRAMV 58
           ++RR Q       R++++GGGV G  +A +       V+L++ +         A+L   V
Sbjct: 19  DARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV 78

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                 + V    +  V G           +  VL  +G R+  D +V+  G
Sbjct: 79  ARYHAAQGVDLRFERSVTG---------SVDGVVLLDDGTRIAADMVVVGIG 121

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE 45
          ++   VVIGGG+ GS +A  L + + +  L +   
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15 RVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWASLRA 56
          R+V+IG G+ G+ +A  L  +   ++T++D         ++  A
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHA 46

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 13 NKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKE 45
           KRVVV+G GV G   A  L      V ++    
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
          K+K+++++G G +G+++ + L +    V +ID
Sbjct: 1  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIID 32

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 15 RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF 47
          +V+V+G    G        +L   A++   +  ++ 
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWASLRAMV 58
           ++   ++    + R+VVIGGG  G  VA           +     +    +T   + A  
Sbjct: 24  DAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 83

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
           E    +  V   T   V G  +++    +T   VL  +G R+  D ++   G
Sbjct: 84  EHLHREAGVDIRTGTQVCGFEMSTDQQKVT--AVLCEDGTRLPADLVIAGIG 133

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
           KR + +GGG      A       A    +D     ++      + +     ++   N  +
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 73  YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
              +               V+   G    YD +++A G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 10 EGKNKRVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWA 52
          E  + ++ ++G G A    A  L     +D+T+ + +EY      
Sbjct: 1  EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.78
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.77
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.77
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.76
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.75
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.74
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.74
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.73
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.73
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.7
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.69
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.67
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.63
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.61
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.6
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.58
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.57
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.57
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.56
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.55
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.55
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.54
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.54
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.52
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.51
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.49
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.48
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.45
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.45
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.43
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.43
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.42
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.41
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.4
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.37
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.36
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.34
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.31
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.3
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.29
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.26
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.26
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.25
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.24
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.24
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.24
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.22
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.2
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.19
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.18
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.17
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.16
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.16
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.14
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.11
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.08
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.01
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.98
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.96
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.96
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.95
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.94
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.93
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.91
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.89
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.85
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.79
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.77
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.76
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.76
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.76
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.72
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.72
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.67
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.66
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.65
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.63
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.61
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.56
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.51
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.51
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.44
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.25
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.17
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.17
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.15
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.11
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.09
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.03
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.02
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.96
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.9
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.74
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.68
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.63
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.47
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.33
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.33
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.32
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.3
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.29
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.24
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.17
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.16
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.15
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.12
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.99
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.99
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.96
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.82
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.78
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.77
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.71
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.68
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.63
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.53
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.51
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.41
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.35
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.21
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.21
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.19
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.09
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.07
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.01
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.98
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.96
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.96
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.89
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.88
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.84
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.82
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.82
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.74
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.57
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.52
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.49
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.45
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.41
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.35
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.34
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.24
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.08
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.08
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.98
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.91
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.85
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.83
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.8
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.65
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.62
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.58
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.57
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.55
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.37
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.29
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.27
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.24
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.12
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.02
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.9
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.86
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.59
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.43
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.35
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.32
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.17
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.07
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.04
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.95
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.93
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.58
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.52
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.5
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.26
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.96
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.39
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.3
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.85
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.82
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.8
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.67
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.97
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.72
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.67
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.63
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.33
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.2
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.2
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.9
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.89
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	88.72
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.53
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	88.4
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	88.05
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.9
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.86
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.69
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.66
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.41
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.77
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.43
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.96
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.79
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.79
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.56
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.39
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.35
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.25
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.11
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.94
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.85
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.82
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.64
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.62
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.62
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	84.27
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.03
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	83.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	83.8
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.99
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.91
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.75
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	82.53
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.27
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.94
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	81.94
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.9
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.78
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	81.53
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	81.47
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	81.36
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.33
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.13
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.82
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.54
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	80.53
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	80.39
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	80.07

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.82  E-value=1.9e-20  Score=143.63  Aligned_cols=98  Identities=19%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC-----CCCchhhcccccccccCCCCceEe
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGMLMV  242 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~-----~~~~~~~~~~~~~~~~~~~g~i~v  242 (275)
                      ..+...++..+++++...... .............+...+.+|.||+|+|.     .|+.+.+....++++++++|+|.|
T Consensus        97 ~~~~~~~~~~~v~~i~~~~~~-~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~v  175 (221)
T d1dxla1          97 RGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILV  175 (221)
T ss_dssp             HHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCC
T ss_pred             hHHHHhhhcCCeEEEEecccc-ccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEe
Confidence            334455666788887654322 11111111122334567899999999994     566665555556778999999999


Q ss_pred             CCCccccCCCCeEEeccccCCCCCC
Q 023957          243 DENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       243 ~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      |++++| +.|+|||+|||+..|.+.
T Consensus       176 d~~~~T-~v~gi~A~GDv~~g~~l~  199 (221)
T d1dxla1         176 NERFST-NVSGVYAIGDVIPGPMLA  199 (221)
T ss_dssp             CTTCBC-SSTTEEECSTTSSSCCCH
T ss_pred             CCCccc-CCCCEEEEeccCCCcccH
Confidence            999999 999999999999877653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=1.1e-20  Score=145.15  Aligned_cols=96  Identities=24%  Similarity=0.272  Sum_probs=68.0

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEE-cCCCcEEeecEEEEcC--------CCCCCchhhcccccccccCCCC
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLCT--------GKPVGSDWLKDTILKDSLDTHG  238 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a~--------G~~~~~~~~~~~~~~~~~~~~g  238 (275)
                      ......++..+++++.+...  +.. .....+. ..++..+.++.+|+++        |.+|+.+.+....++++++++|
T Consensus        95 ~~~~~~~~~~~V~~i~G~a~--f~~-~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G  171 (223)
T d1ebda1          95 GGVEGLLKGNKVEIVKGEAY--FVD-ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRG  171 (223)
T ss_dssp             HHHHHHHHTTTCEEEESEEE--EEE-TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTS
T ss_pred             hhHHHhhhccceeeeccEEE--Ecc-CcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCC
Confidence            33445566778888766421  211 1222333 3344578999999986        6777777665555566889999


Q ss_pred             ceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          239 MLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       239 ~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +|.||+++|| |.|+|||+|||+..+...
T Consensus       172 ~I~vd~~~~T-~~~gvyA~GDv~~~~~~~  199 (223)
T d1ebda1         172 LIEVDQQCRT-SVPNIFAIGDIVPGPALA  199 (223)
T ss_dssp             CBCCCTTCBC-SSTTEEECGGGSSSCCCH
T ss_pred             CEeECCCCCC-CCCCEEEEeccCCCcccH
Confidence            9999999999 999999999999877654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=6.8e-19  Score=132.44  Aligned_cols=90  Identities=26%  Similarity=0.357  Sum_probs=70.4

Q ss_pred             HHHHhCCCEEEcCceeeeecCCCCCceEE-cCCCc--EEeecEEEEcCCCCCC--------chhhcccccccccCCCCce
Q 023957          172 DWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGD--TINADCHFLCTGKPVG--------SDWLKDTILKDSLDTHGML  240 (275)
Q Consensus       172 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~--~~~~d~vv~a~G~~~~--------~~~~~~~~~~~~~~~~g~i  240 (275)
                      +.++++|++++++++|++++.+++.+.+. ..+|+  ++.+|.+|+++|..|+        ..++..   .++++++|++
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~---~~~~~~~G~i  140 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG---TLELHPNGLI  140 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT---TSCBCTTSCB
T ss_pred             HHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccc---cceeccCCce
Confidence            34667899999999999999877666654 44554  5789999999997653        333332   2356789999


Q ss_pred             EeCCCccccCCCCeEEeccccCCCC
Q 023957          241 MVDENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       241 ~v~~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .||+++|| +.|+|||+|||+..+.
T Consensus       141 ~vd~~~~T-~~~~IyA~GD~a~~~~  164 (198)
T d1nhpa1         141 KTDEYMRT-SEPDVFAVGDATLIKY  164 (198)
T ss_dssp             CCCTTCBC-SSTTEEECGGGSCEEE
T ss_pred             ecCCcccc-cccceEEecceeeccc
Confidence            99999999 8999999999997654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.77  E-value=4.7e-19  Score=139.11  Aligned_cols=38  Identities=21%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ..||++|||||++|+.+|..++ .|.+|+++|+.+.+|+
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG   79 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG   79 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence            4689999999999999999998 6999999999888764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-19  Score=137.97  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      +|||+||||||+|++||.+++ .|.+|+|||++...|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence            599999999999999999998 599999999977544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.4e-18  Score=132.91  Aligned_cols=93  Identities=18%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc--EEeecEEEEcCCCCCCchh--------hcccccccccCC-
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDW--------LKDTILKDSLDT-  236 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~--------~~~~~~~~~~~~-  236 (275)
                      ..+...+++.+|+++.+......   .+...+...++.  .+.++.+++++|.+|....        +.....++.++. 
T Consensus       105 ~g~~~~l~~~~V~vi~G~~~~~~---~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~  181 (235)
T d1h6va1         105 WGYRVALREKKVVYENAYGKFIG---PHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEK  181 (235)
T ss_dssp             HHHHHHHHHHTCEEECCEEEEEE---TTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSS
T ss_pred             chhhhhhhccCceEEEeEEeecc---ccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccc
Confidence            33455667789999876644222   233445555554  6889999999998875321        222233456665 


Q ss_pred             CCceEeCCCccccCCCCeEEeccccCCC
Q 023957          237 HGMLMVDENLRVKGQKNIFAIGDITDIR  264 (275)
Q Consensus       237 ~g~i~v~~~~~~~~~~~v~a~Gd~~~~~  264 (275)
                      .|+|.||+++|| |.|+|||+|||+..+
T Consensus       182 ~g~I~vd~~~~T-svpgIyA~GDv~~g~  208 (235)
T d1h6va1         182 TGKIPVTDEEQT-NVPYIYAIGDILEGK  208 (235)
T ss_dssp             SCCBCCCTTSBC-SSTTEEECGGGBTTS
T ss_pred             cCccccCCcccc-CCCCEEEEEeccCCC
Confidence            489999999999 999999999998543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=6.1e-19  Score=135.63  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC--CcEEeecEEEEcCCCCCCch-------hhcccccccccCCCC
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST--GDTINADCHFLCTGKPVGSD-------WLKDTILKDSLDTHG  238 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~~~~d~vv~a~G~~~~~~-------~~~~~~~~~~~~~~g  238 (275)
                      ..+...++..|++++.+.......   ........+  ...+.++.+++++|.+|...       -+.....++.++++|
T Consensus       103 ~~~~~~~~~~gV~vi~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G  179 (229)
T d3lada1         103 GGVASLIKANGVTLFEGHGKLLAG---KKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERG  179 (229)
T ss_dssp             HHHHHHHHHHTCEEEESEEEECST---TCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTS
T ss_pred             hhHHHHhhcCCeEEEEeEEccccc---ceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCC
Confidence            444556677899998766543222   222333332  34788999999999776432       011223455789999


Q ss_pred             ceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          239 MLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       239 ~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +|.||++++| +.|+|||+|||+..|...
T Consensus       180 ~i~vd~~~~T-~vpgiyA~GDv~~g~~l~  207 (229)
T d3lada1         180 FIYVDDYCAT-SVPGVYAIGDVVRGAMLA  207 (229)
T ss_dssp             CBCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             cEEecccccC-CCCCEEEEeCCcchHHHH
Confidence            9999999999 999999999998777643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.8e-19  Score=134.56  Aligned_cols=88  Identities=22%  Similarity=0.247  Sum_probs=70.3

Q ss_pred             HHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC-chhhcccccccccC-CCCceEeCCCccccCC
Q 023957          174 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG-SDWLKDTILKDSLD-THGMLMVDENLRVKGQ  251 (275)
Q Consensus       174 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~  251 (275)
                      +++.||+++++++|++|+.+++  .|.+++|++++||.+|+|+|..|+ ..+....++  +++ ..|.+.||+++|+ + 
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl--~~~~~~~~i~vd~~l~~-~-  166 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGL--EIDSDFGGFRVNAELQA-R-  166 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTC--CBCTTTCSEECCTTCEE-E-
T ss_pred             HHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeeecchhhhhhccch--hhhhhhhhhhhhHhcCc-C-
Confidence            4568999999999999975543  588899999999999999997653 455555555  343 3578999999998 5 


Q ss_pred             CCeEEeccccCCCCCC
Q 023957          252 KNIFAIGDITDIRVSA  267 (275)
Q Consensus       252 ~~v~a~Gd~~~~~~~~  267 (275)
                      |+|||+|||+..+...
T Consensus       167 ~~VyA~GD~a~~~~~~  182 (213)
T d1m6ia1         167 SNIWVAGDAACFYDIK  182 (213)
T ss_dssp             TTEEECGGGEEEEETT
T ss_pred             CceEEeeeeeeecccc
Confidence            9999999999877643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=3.2e-19  Score=137.69  Aligned_cols=99  Identities=23%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCC---CCCceEEcCCCc--EEeecEEEEcCCCCCCchhh---------cccccccc
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTSTGD--TINADCHFLCTGKPVGSDWL---------KDTILKDS  233 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~---~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~---------~~~~~~~~  233 (275)
                      ..+.+.++..|++++.+.........   ...+.+...+|+  ++++|.+++++|..|.....         .....+++
T Consensus        98 ~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~  177 (233)
T d1xdia1          98 ADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQ  177 (233)
T ss_dssp             HHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCC
T ss_pred             cceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhc
Confidence            33556677889999876533211111   123445566764  79999999999988753211         11223457


Q ss_pred             cCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          234 LDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       234 ~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ++++|+|.||++++| +.|+|||+|||++.+...
T Consensus       178 ~~~~G~I~vd~~~~T-~~~gIyA~GDv~~~~~l~  210 (233)
T d1xdia1         178 LGRGNYLTVDRVSRT-LATGIYAAGDCTGLLPLA  210 (233)
T ss_dssp             CBTTTBCCCCSSSBC-SSTTEEECSGGGTSCSCH
T ss_pred             ccCCCcCCcCCCccc-CCCCEEEEEEeCCCchhH
Confidence            888999999999999 899999999999877654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.74  E-value=1.3e-18  Score=133.85  Aligned_cols=61  Identities=20%  Similarity=0.344  Sum_probs=46.6

Q ss_pred             EEeecEEEEcCCC-CCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          206 TINADCHFLCTGK-PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       206 ~~~~d~vv~a~G~-~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ...++.++++.|. .|.........++++++++|+|.||+++|| |.|+|||+|||++.|.+.
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~~~~l~  207 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPMLA  207 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCSSCCH
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCCCcchH
Confidence            4666777777764 454444434445568899999999999999 999999999999887654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=7e-18  Score=123.33  Aligned_cols=85  Identities=20%  Similarity=0.360  Sum_probs=66.7

Q ss_pred             HHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCC
Q 023957          174 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  253 (275)
Q Consensus       174 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~  253 (275)
                      +++.+++++.++.++.++...   .+.+.+++++++|.+++|+|..| ..++...++  +.  ++.+.||.++|| +.|+
T Consensus        62 ~~~~~v~~~~~~~v~~i~~~~---~~~~~~~~~i~~D~li~a~G~~~-~~~~~~~gl--~~--~~~i~v~~~~~t-~~~~  132 (167)
T d1xhca1          62 YRKRGIEIRLAEEAKLIDRGR---KVVITEKGEVPYDTLVLATGAPN-VDLARRSGI--HT--GRGILIDDNFRT-SAKD  132 (167)
T ss_dssp             HHHHTEEEECSCCEEEEETTT---TEEEESSCEEECSEEEECCCEEC-CHHHHHTTC--CB--SSSEECCTTSBC-SSTT
T ss_pred             HHhccceeeeecccccccccc---ccccccccccccceeEEEEEecC-CchhhhcCc--ee--CCceeeccccEe-cCCC
Confidence            456799999999999886432   35556677899999999999876 466666665  33  345999999999 8999


Q ss_pred             eEEeccccCCCCCC
Q 023957          254 IFAIGDITDIRVSA  267 (275)
Q Consensus       254 v~a~Gd~~~~~~~~  267 (275)
                      |||+|||+..+...
T Consensus       133 i~aiGD~~~~~~~~  146 (167)
T d1xhca1         133 VYAIGDCAEYSGII  146 (167)
T ss_dssp             EEECGGGEEBTTBC
T ss_pred             eEEeeecccCCCeE
Confidence            99999999876643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=2e-17  Score=123.55  Aligned_cols=94  Identities=21%  Similarity=0.253  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC-----CCCchhhcccccccccCCCCce
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGML  240 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~-----~~~~~~~~~~~~~~~~~~~g~i  240 (275)
                      +...+.+.+++.|+++... .|..++..++...+.... ....+|.+++++|.     .|+..++..   .++++++|+|
T Consensus        69 l~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~~~~g~~p~~~~~~~---~veld~~G~i  143 (192)
T d1vdca1          69 LTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGAVAKGHEPATKFLDG---GVELDSDGYV  143 (192)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCEEECCEEESCGGGTT---SSCBCTTSCB
T ss_pred             HHHHHHHHHHhhcceeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeeeeecccCchHHHhcC---ceeecCCCeE
Confidence            4444555567789999765 577887766666666554 46899999999985     355555442   3478899999


Q ss_pred             EeCC-CccccCCCCeEEeccccCCCC
Q 023957          241 MVDE-NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       241 ~v~~-~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .+|+ .++| +.|+|||+|||++.+.
T Consensus       144 ~~~~~~~~T-s~~GV~a~GDv~~~~~  168 (192)
T d1vdca1         144 VTKPGTTQT-SVPGVFAAGDVQDKKY  168 (192)
T ss_dssp             CCCTTSCBC-SSTTEEECGGGGCSSC
T ss_pred             EeCCCceEe-cCCCEEEeeecCCccc
Confidence            9996 5777 8999999999998765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=3.3e-17  Score=127.62  Aligned_cols=101  Identities=15%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCCCch---------hhccccccccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSD---------WLKDTILKDSL  234 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~---------~~~~~~~~~~~  234 (275)
                      .+.+.+.+.+++.|++++.+++|+++..+++.. .+.+++|+.+.||.||+|+|-...+.         +++..+..+.-
T Consensus       111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~  190 (251)
T d2i0za1         111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITE  190 (251)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeee
Confidence            567788888999999999999999998776654 47888999999999999999654332         33333321110


Q ss_pred             CCCCceEe---C-CCccccCCCCeEEeccccCCCC
Q 023957          235 DTHGMLMV---D-ENLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       235 ~~~g~i~v---~-~~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ...+.+.+   + ..+..+..|++|++|++.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~  225 (251)
T d2i0za1         191 LFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHG  225 (251)
T ss_dssp             EEEEEECGGGEETTTTEESSSBTEEECGGGBSCBC
T ss_pred             eeecccCccccCchhHHHhcCCCcEeeeeEEEccC
Confidence            00011111   1 1233346899999999986544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=9.9e-18  Score=129.16  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             EEeecEEEE--------cCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          206 TINADCHFL--------CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       206 ~~~~d~vv~--------a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      .++++.+++        ++|.+|+.+.+....++++++++|++.||++++| +.|+|||+|||+..|...
T Consensus       143 ~~~~~~i~i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g~~l~  211 (233)
T d1v59a1         143 ILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFGPMLA  211 (233)
T ss_dssp             EEEEEEEEECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             eccCCeEEEecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcccHHHH
Confidence            445555555        7788888776655556668899999999999998 899999999999877654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=1e-16  Score=125.06  Aligned_cols=101  Identities=9%  Similarity=0.062  Sum_probs=68.1

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc--e-EEcCCCcEEeecEEEEcCCCCCCch---------hhcccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD--T-YLTSTGDTINADCHFLCTGKPVGSD---------WLKDTILK  231 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~--~-v~~~~g~~~~~d~vv~a~G~~~~~~---------~~~~~~~~  231 (275)
                      ..+.+.+.+.+++.|++++++++|++++..++..  . +...++.+++||.||+|+|-.+.+.         +++..++.
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence            4577888888999999999999999987655432  2 3455778899999999999654322         23333332


Q ss_pred             cccCC----CCceE---eCC-CccccCCCCeEEeccccCCCC
Q 023957          232 DSLDT----HGMLM---VDE-NLRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       232 ~~~~~----~g~i~---v~~-~~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +. ++    .|.+.   +|. .+++...|++|++|.+.....
T Consensus       189 i~-~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g  229 (253)
T d2gqfa1         189 VI-PPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTG  229 (253)
T ss_dssp             EE-EEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEE
T ss_pred             cc-ccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeee
Confidence            20 00    12222   443 377777899999998876543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=4.1e-17  Score=124.64  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +..+|++||||||+|++||..++ .|.+|+|||++...
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~G   40 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34689999999999999999998 69999999998643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=8.4e-16  Score=114.47  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc-----hhhcccccccccCCCCce
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS-----DWLKDTILKDSLDTHGML  240 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~-----~~~~~~~~~~~~~~~g~i  240 (275)
                      +.+.+.+.+.+.++++... .|+.+...++...+...+ ..+.++.+++++|..+..     .++..   .+++ ++|++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~---~~e~-~~g~i  137 (190)
T d1trba1          64 LMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEG---QLEL-ENGYI  137 (190)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTT---TSCE-ETTEE
T ss_pred             HHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecc---eEec-CCcEE
Confidence            4444555566778888764 577777766666666554 469999999999976532     22221   1223 36889


Q ss_pred             EeCCC-----ccccCCCCeEEeccccCCCC
Q 023957          241 MVDEN-----LRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       241 ~v~~~-----~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      .++..     ++| +.|+||++|||+..+.
T Consensus       138 ~~~~~~~~~~~~T-~v~gV~aaGDv~~~~~  166 (190)
T d1trba1         138 KVQSGIHGNATQT-SIPGVFAAGDVMDHIY  166 (190)
T ss_dssp             CCCCSSSSCTTBC-SSTTEEECGGGGCSSS
T ss_pred             EEecCCccccccc-ccCeEEEeEEecCcce
Confidence            99854     577 8999999999987554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.64  E-value=9.9e-16  Score=120.80  Aligned_cols=64  Identities=11%  Similarity=-0.090  Sum_probs=54.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  230 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  230 (275)
                      .+...+.+.++++|++++.+++|+.|+.+++.+.|.+++| ++.||.||+|+|... ..+++..++
T Consensus       152 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s-~~l~~~~G~  215 (276)
T d1ryia1         152 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQLGL  215 (276)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHTTC
T ss_pred             cchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH-HHHHhhcCC
Confidence            5677888889999999999999999998888888888887 599999999999875 557766665

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.62  E-value=3.6e-17  Score=126.61  Aligned_cols=63  Identities=25%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             cEEeecEEEEcCCCCCCchh--------hcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          205 DTINADCHFLCTGKPVGSDW--------LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       205 ~~~~~d~vv~a~G~~~~~~~--------~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      +.+.+|.+++++|.+|...-        +.....+++++++|+|.||+++|| |.|+|||+|||++.+...+
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~~~~~~~  218 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVMLTP  218 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGCSCCCHH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCCCccchh
Confidence            47899999999998875321        122234557899999999999999 9999999999998876543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.61  E-value=2.2e-16  Score=125.03  Aligned_cols=65  Identities=22%  Similarity=0.117  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccc
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK  231 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~  231 (275)
                      .+...+.+.+++.|++++.+++|++++..++.+.|.+++|+ +.||.||+|+|... ..+++..++.
T Consensus       151 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g~-i~a~~VViAaG~~s-~~l~~~lg~~  215 (281)
T d2gf3a1         151 NCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWN-SKLLSKLNLD  215 (281)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEE-EEEEEEEECCGGGH-HHHGGGGTEE
T ss_pred             ccccccccccccccccccCCcEEEEEEEECCEEEEEECCcE-EEcCEEEECCCCcc-hhhHHhcCCc
Confidence            57788888999999999999999999998888889988874 99999999999875 4666666653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.9e-15  Score=113.89  Aligned_cols=92  Identities=24%  Similarity=0.233  Sum_probs=64.8

Q ss_pred             HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhc------ccccccccCCCCceE
Q 023957          168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK------DTILKDSLDTHGMLM  241 (275)
Q Consensus       168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~------~~~~~~~~~~~g~i~  241 (275)
                      ......+++.||++...........      ....+++.+.++.+++++|..|..+-++      ....++.+++++++.
T Consensus        95 ~~~~~~l~~~gV~v~~~~~~~~~~~------~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~  168 (217)
T d1gesa1          95 TSYENVLGKNNVDVIKGFARFVDAK------TLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIV  168 (217)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEETT------EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBC
T ss_pred             HHHHHHHhCCeEEEEeeecccceee------eecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEe
Confidence            3445557778999887664433221      2234567899999999999776533222      112345778899999


Q ss_pred             eCCCccccCCCCeEEeccccCCCCC
Q 023957          242 VDENLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       242 v~~~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      +|+.++| +.|+||++||++.....
T Consensus       169 ~d~~~~t-~~~~i~~iG~g~~g~el  192 (217)
T d1gesa1         169 VDKYQNT-NIEGIYAVGDNTGAVEL  192 (217)
T ss_dssp             CCTTSBC-SSTTEEECSGGGTSCCC
T ss_pred             eCchhcc-CCCcEEEECCCccHHHH
Confidence            9999999 79999999999876554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2e-14  Score=112.13  Aligned_cols=56  Identities=5%  Similarity=-0.219  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      .+.+.+.+.+++.|++|+++++|++|..+++  .+..++.+|++++||.||+.+.+.|
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhcc
Confidence            5788899999999999999999999965433  3444567899999999998755555

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.57  E-value=2.5e-17  Score=126.87  Aligned_cols=148  Identities=16%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccccc-EEEEeeeeEe
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINI   87 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   87 (275)
                      ....++|+|||||||||+||..|+ +|++|+|+|+++.+|+.|.......................... ..........
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLAL  125 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEEC
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeeec
Confidence            345689999999999999999998 79999999999999876653222111100000000000000000 0000000111


Q ss_pred             ecCeEEecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc---------------------CCcchhhHHHHHhhhCCC
Q 023957           88 TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA---------------------GGPTGVELAGEIAVDFPE  146 (275)
Q Consensus        88 ~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~---------------------~g~~~~~~a~~l~~~~~~  146 (275)
                      ..+.+...+...+.||++|+|||+.+..|.......+....                     +|.+|+++|..+.  ..+
T Consensus       126 ~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g  203 (233)
T d1djqa3         126 GQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIE--EAN  203 (233)
T ss_dssp             SCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTT--SSC
T ss_pred             ccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHH--hcC
Confidence            11122222334568999999999987665543222211111                     7788999999998  668


Q ss_pred             CEEEEEeCCCccc
Q 023957          147 KKVTLVHKGSRLL  159 (275)
Q Consensus       147 ~~v~~~~~~~~~~  159 (275)
                      .+++++.+.+.+.
T Consensus       204 ~~Vtli~r~~~~~  216 (233)
T d1djqa3         204 PQIAIPYKRETIA  216 (233)
T ss_dssp             TTSCCCCCCCCCC
T ss_pred             CceEEEEeccccc
Confidence            8899999887654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.8e-14  Score=106.57  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=64.2

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCC---CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCc
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSE---GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  246 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~---~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~  246 (275)
                      +....++.+++......+..+....   ........+...+.++.+++++|..+.........+  .....|.+.+|...
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~g~i~v~~~~  139 (184)
T d1fl2a1          62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV--ERNRMGEIIIDAKC  139 (184)
T ss_dssp             HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTS--CBCTTSCBCCCTTC
T ss_pred             HHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccc--cccccceeccCCce
Confidence            3344555667776666665554322   223344566678999999999997654443333332  55667899999999


Q ss_pred             cccCCCCeEEeccccCCCC
Q 023957          247 RVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       247 ~~~~~~~v~a~Gd~~~~~~  265 (275)
                      ++ +.|+||++|||...+.
T Consensus       140 ~t-~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1         140 ET-NVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             BC-SSTTEEECSTTBSCSS
T ss_pred             ee-eCCCEEEEeeecCccc
Confidence            98 8999999999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.56  E-value=4.1e-16  Score=115.47  Aligned_cols=136  Identities=21%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHH----------HHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR----------DWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|.+|+|+|..|+.......+.++...... +...+.+...+.          ......+++++.+..++++..+  ...
T Consensus        11 gG~~G~e~A~~l~~~g~~v~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~--~~~   87 (183)
T d1d7ya1          11 AGLASVSFVAELRQAGYQGLITVVGDEAER-PYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQ--AHT   87 (183)
T ss_dssp             CSHHHHHHHHHHHHHTCCSCEEEEESSCSC-CBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETT--TTE
T ss_pred             ccHHHHHHHHHHHhcCCceEEEEEeccccc-chhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccccc--cce
Confidence            788999999999864444445544433221 111111222111          1233568999999999988754  345


Q ss_pred             EEcCCCcEEeecEEEEcCCCCCCchhhccccc-ccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          199 YLTSTGDTINADCHFLCTGKPVGSDWLKDTIL-KDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~-~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      +.+++|+++++|.+++|+|..|+..++..... ...++.++.|.||+++|| +.|+|||+|||+..++...
T Consensus        88 ~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~~  157 (183)
T d1d7ya1          88 VALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRT-TCPDVYALGDVTRQRNPLS  157 (183)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCBC-SSTTEEECGGGEEEECTTT
T ss_pred             eEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccceec-cccccchhhhhhccceeeC
Confidence            77889999999999999999987544432110 111334567999999998 8999999999998876543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=2.5e-14  Score=105.79  Aligned_cols=87  Identities=16%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             HhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc---hhhcccccccccCCCCceEeCCCccccCC
Q 023957          175 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS---DWLKDTILKDSLDTHGMLMVDENLRVKGQ  251 (275)
Q Consensus       175 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~---~~~~~~~~~~~~~~~g~i~v~~~~~~~~~  251 (275)
                      ...+..+..+..+..++.+  ...+...++.++++|.+++++|.+|+.   .++...++    ..++++.||+++|| +.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~----~~~~~i~Vd~~~~t-s~  142 (185)
T d1q1ra1          70 AAQNIQLLGGTQVTAINRD--RQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGL----QVDNGIVINEHMQT-SD  142 (185)
T ss_dssp             HHTTEEEECSCCEEEEETT--TTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTC----CBSSSEECCTTSBC-SS
T ss_pred             cccceeeeccceeeeeccc--ccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCc----cccCccccCCcccc-ch
Confidence            3456777777777766543  445777888899999999999987643   34443333    34688999999999 89


Q ss_pred             CCeEEeccccCCCCCCC
Q 023957          252 KNIFAIGDITDIRVSAS  268 (275)
Q Consensus       252 ~~v~a~Gd~~~~~~~~~  268 (275)
                      |+||++|||+..+....
T Consensus       143 ~~vya~GD~~~~~~~~~  159 (185)
T d1q1ra1         143 PLIMAVGDCARFHSQLY  159 (185)
T ss_dssp             TTEEECGGGEEEEETTT
T ss_pred             hhhhcchhhhccccccC
Confidence            99999999998876543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.55  E-value=1.7e-15  Score=123.09  Aligned_cols=41  Identities=29%  Similarity=0.364  Sum_probs=36.6

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ....++|+|||||++||+||++|+ +|++|+|||+++.+|+.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            345689999999999999999998 69999999999988853

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-15  Score=121.14  Aligned_cols=52  Identities=13%  Similarity=-0.036  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          167 GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       167 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .......+++.|.+++++++|++|..+++.+.+++.+|++++||.||+|++.
T Consensus       210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         210 GQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             hHHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            3444455667799999999999999988898999999999999999999764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.54  E-value=3.5e-15  Score=119.54  Aligned_cols=97  Identities=11%  Similarity=0.016  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC-CC--cEEeecEEEEcCCCCCCchhhccccccc-----ccCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-TG--DTINADCHFLCTGKPVGSDWLKDTILKD-----SLDTH  237 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~-----~~~~~  237 (275)
                      +.....+..++.|++|+++++|++|+.+++.+.+++. +|  ++++||.||+|+|......++.......     .+...
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            4444555556669999999999999988877776554 33  4689999999988542233332211100     01112


Q ss_pred             Cc---eEeCCCccccCCCCeEEeccccCC
Q 023957          238 GM---LMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       238 g~---i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      +.   +.......+ ++|++|++||....
T Consensus       301 ~~~~~~~~~~~~~~-~~p~~~~~G~~~~g  328 (347)
T d2ivda1         301 GHLERVAAIDAALQ-RLPGLHLIGNAYKG  328 (347)
T ss_dssp             THHHHHHHHHHHHH-TSTTEEECSTTTSC
T ss_pred             Ccccceeccccccc-CCCCEEEecccccC
Confidence            21   111122233 79999999998653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.52  E-value=2.5e-14  Score=115.23  Aligned_cols=40  Identities=30%  Similarity=0.296  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ..+||+|||+|++||+||+.|+ +|++|+||||.+..+...
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            3589999999999999999998 699999999998876543

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.51  E-value=3.9e-14  Score=108.96  Aligned_cols=50  Identities=28%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             CCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          217 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       217 G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      |..|+...+.....++.+ .+|+|.||+++|| +.|+|||+|||++.+.+.+
T Consensus       168 ~~~~~~~~l~~~~~gv~~-~~G~I~vde~~~T-~~~~iyAvGDv~~~~~l~~  217 (238)
T d1aoga1         168 GRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTP  217 (238)
T ss_dssp             CEEECCGGGCGGGTTCCE-ETTEECCCTTCBC-SSTTEEECGGGGTSCCCHH
T ss_pred             ccccceeeecccccEEEE-cCCeEEecCCeee-ccCCEEEEEEecCCccchh
Confidence            334444444333334444 3799999999999 9999999999998876543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1e-14  Score=106.14  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeee
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAI   85 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (275)
                      +....++|+|||||||||+||+.|+ +|++|+|||+.+.+|+...............+......+..  .++++..+.. 
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~-  117 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT-  117 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC-
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE-
Confidence            3445689999999999999999998 79999999999999865432111111111111111111111  1344432221 


Q ss_pred             EeecCeEEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           86 NITENEVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                            + +.+ ....||.+++|||+.|..+..
T Consensus       118 ------V-t~~-~~~~~d~vilAtG~~~~~~~~  142 (179)
T d1ps9a3         118 ------V-TAD-QLQAFDETILASGIPNRALAQ  142 (179)
T ss_dssp             ------C-CSS-SSCCSSEEEECCCEECCTTHH
T ss_pred             ------E-ccc-ccccceeEEEeecCCCccccc
Confidence                  1 111 245799999999998776654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=1.7e-13  Score=106.76  Aligned_cols=99  Identities=22%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhCCCEEEcCcee----eeecC--CCCCc--eEEcCCCcEEeecEEEEcCCCCCC-----chhhcccccccc
Q 023957          167 GDKTRDWLISKKVDVKLGERV----NLDSV--SEGSD--TYLTSTGDTINADCHFLCTGKPVG-----SDWLKDTILKDS  233 (275)
Q Consensus       167 ~~~~~~~~~~~gv~i~~~~~v----~~i~~--~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~-----~~~~~~~~~~~~  233 (275)
                      ...+...+++.||+++.+.-.    ..+..  .++..  .....+++.+.+|.|++|||.+|.     .+.+.....++ 
T Consensus        91 ~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i-  169 (259)
T d1onfa1          91 NNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV-  169 (259)
T ss_dssp             HHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTSSCTTTTC-
T ss_pred             ccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccccccccee-
Confidence            334455567778888765421    01111  01000  011223457999999999999983     33333222232 


Q ss_pred             cCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          234 LDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       234 ~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      +++++.+.+|...++ ...++|++||++......
T Consensus       170 ~ts~~~~~~d~~~~t-~Vig~gaiGdv~~~~~~~  202 (259)
T d1onfa1         170 ETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSK  202 (259)
T ss_dssp             CBSSSCEEECTTCBC-SSSSEEECSTTEEEC---
T ss_pred             eecccccccccCCce-eEeeEEEEEEeeehhhhh
Confidence            455788999998888 799999999998655443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.45  E-value=1.4e-14  Score=116.32  Aligned_cols=37  Identities=35%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ++|+|||||+|||+||++|+ .|++|+|||+++.+|+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~   39 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK   39 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCc
Confidence            68999999999999999998 69999999999998853

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.45  E-value=1.5e-13  Score=109.62  Aligned_cols=69  Identities=20%  Similarity=0.000  Sum_probs=55.3

Q ss_pred             cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCCCchhhccccccccc
Q 023957          164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL  234 (275)
Q Consensus       164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~  234 (275)
                      ..+...+.+.+++.|++++.+++|+++..+++.+. |.+++| +++||.||+|+|... ..+++..+..++.
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s-~~l~~~~g~~lP~  217 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG-AKIGAMIGMAVPP  217 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH-HHHHHTTTCCCCT
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH-HHHHHHcCCcccc
Confidence            35777888888999999999999999998887655 777776 599999999999875 5666666654443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.43  E-value=3.8e-13  Score=106.54  Aligned_cols=56  Identities=14%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHhCCC--EEEcCceeeeecC--CCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          165 KAGDKTRDWLISKKV--DVKLGERVNLDSV--SEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv--~i~~~~~v~~i~~--~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ++.+.+.+..++.++  .|.++++|++++.  ..+.+.|.+.++.++.+|.||+|+|+..
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            567778888888888  5999999999974  3456779999999999999999999643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.9e-13  Score=91.11  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTI  207 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~  207 (275)
                      +|++|+|+|..+.  ..|.+++++++.+++++.+++++.+.+.+.++++|+++++++.|+++...++ .+.+.+++|+++
T Consensus        29 gG~ig~E~A~~l~--~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~  106 (116)
T d1gesa2          29 AGYIGVELGGVIN--GLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSE  106 (116)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEE
T ss_pred             CChhhHHHHHHhh--ccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEE
Confidence            8999999999998  5689999999999999999999999999999999999999999999987654 457889999999


Q ss_pred             eecEEEEcCC
Q 023957          208 NADCHFLCTG  217 (275)
Q Consensus       208 ~~d~vv~a~G  217 (275)
                      ++|.|++|+|
T Consensus       107 ~~D~vi~a~G  116 (116)
T d1gesa2         107 TVDCLIWAIG  116 (116)
T ss_dssp             EESEEEECSC
T ss_pred             EcCEEEEecC
Confidence            9999999998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.42  E-value=1.6e-13  Score=110.22  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      +...+||||||||++||+||++|+ .|.+|+|+||.+..+...
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            344689999999999999999998 699999999998876543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.41  E-value=1.2e-12  Score=88.94  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=79.7

Q ss_pred             CCcchhhHHHHHhhh-CCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcE
Q 023957          129 GGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT  206 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~  206 (275)
                      +|++|+|+|..+... ..+.+++++.+.+.+++.+++++.+.+.+.++++||++++++.|++++..++ ...+.+++|++
T Consensus        26 gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~  105 (117)
T d1feca2          26 GGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAE  105 (117)
T ss_dssp             SSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCE
T ss_pred             CChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCE
Confidence            889999999876643 3478999999999999999999999999999999999999999999986544 45688999999


Q ss_pred             EeecEEEEcCCC
Q 023957          207 INADCHFLCTGK  218 (275)
Q Consensus       207 ~~~d~vv~a~G~  218 (275)
                      ++||.|++|+|.
T Consensus       106 i~~D~Vi~a~GR  117 (117)
T d1feca2         106 ADYDVVMLAIGR  117 (117)
T ss_dssp             EEESEEEECSCE
T ss_pred             EEcCEEEEecCC
Confidence            999999999983

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.40  E-value=8.5e-13  Score=89.80  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=79.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC---c
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---D  205 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~  205 (275)
                      +|++|+|+|..++  ..|.+++++.+.+++++.+++++.+.+.+.++++|+++++++++++++.+++.+.+.+.++   +
T Consensus        30 ~G~ig~E~A~~l~--~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~  107 (119)
T d3lada2          30 AGVIGLELGSVWA--RLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEK  107 (119)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEE
T ss_pred             CChHHHHHHHHHH--HcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCE
Confidence            8899999999999  5799999999999999999999999999999999999999999999998888877776544   5


Q ss_pred             EEeecEEEEcCC
Q 023957          206 TINADCHFLCTG  217 (275)
Q Consensus       206 ~~~~d~vv~a~G  217 (275)
                      ++.||.|++|+|
T Consensus       108 ~~~~D~vlvAvG  119 (119)
T d3lada2         108 SQAFDKLIVAVG  119 (119)
T ss_dssp             EEEESEEEECSC
T ss_pred             EEECCEEEEeeC
Confidence            799999999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.40  E-value=5.5e-13  Score=107.79  Aligned_cols=97  Identities=15%  Similarity=0.048  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EE---cCCCc--EEeecEEEEcCCCCCCc-------h--------
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL---TSTGD--TINADCHFLCTGKPVGS-------D--------  223 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~d~vv~a~G~~~~~-------~--------  223 (275)
                      .+...+.+.+++.|++++.++.+.++..+++.+. +.   ..+|+  .+.++.||+|||-....       .        
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            3566677778889999999999988876665432 22   35665  57899999999843211       0        


Q ss_pred             hhcccccccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957          224 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  263 (275)
Q Consensus       224 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~  263 (275)
                      +....+. .++..-+++.+++..++ +.|++|++|+++..
T Consensus       239 ~~~~~G~-~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~  276 (336)
T d2bs2a2         239 IALETGI-AQLGNMGGIRTDYRGEA-KLKGLFSAGEAACW  276 (336)
T ss_dssp             HHHTTSS-SCEECCCEEECCTTSBC-SSBTEEECGGGEEC
T ss_pred             hhhhhhh-hhhccccceeechhhcc-cCCcceeccccccc
Confidence            1111111 13445678999999998 89999999998644

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.37  E-value=2.1e-12  Score=104.36  Aligned_cols=55  Identities=16%  Similarity=0.022  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC---c---EEeecEEEEcCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---D---TINADCHFLCTGKP  219 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~---~~~~d~vv~a~G~~  219 (275)
                      .+.+.+....+..+..|+++++|++++.+++.+.|++.++   +   ...+|.||+|+|..
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            4566666777777889999999999998888777765432   2   45699999999964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.36  E-value=2.9e-15  Score=118.33  Aligned_cols=91  Identities=18%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             HhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhccccccc------ccCCCCceEeC----C
Q 023957          175 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKD------SLDTHGMLMVD----E  244 (275)
Q Consensus       175 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~------~~~~~g~i~v~----~  244 (275)
                      +..+..+..++.+..+...++.+.+.+.+|+.+.+|.++++.+..............+      .++..++..++    .
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~  300 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYD  300 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHH
T ss_pred             hhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchh
Confidence            3457789999999999988888889999999999999999865321110000000000      00111222222    1


Q ss_pred             CccccCCCCeEEeccccCCCCC
Q 023957          245 NLRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       245 ~~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      .+++ +.++||++||+++...+
T Consensus       301 ~~~~-~~~~v~~~GD~~~~~~~  321 (347)
T d1b5qa1         301 QLRA-PVGRVYFTGEHTSEHYN  321 (347)
T ss_dssp             HHHC-CBTTEEECSGGGCSSCT
T ss_pred             hccc-ccCCEEEEEccccCcCC
Confidence            2345 67999999999876443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.34  E-value=8e-12  Score=84.66  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             CCcchhhHHHHHhhhC-CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCceEEcCCCcE
Q 023957          129 GGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLTSTGDT  206 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~g~~  206 (275)
                      +|++|+|+|..+.... .+.+++++++.+.+++.+++++.+.+.+.++++||++++++.+++++..+ +...+.+++|++
T Consensus        28 gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~  107 (117)
T d1aoga2          28 GGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKK  107 (117)
T ss_dssp             SSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCE
T ss_pred             CcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcE
Confidence            8899999998776543 35789999999999999999999999999999999999999999998544 456789999999


Q ss_pred             EeecEEEEcC
Q 023957          207 INADCHFLCT  216 (275)
Q Consensus       207 ~~~d~vv~a~  216 (275)
                      ++||.|++|.
T Consensus       108 i~~D~Vi~AI  117 (117)
T d1aoga2         108 MDFDLVMMAI  117 (117)
T ss_dssp             EEESEEEECS
T ss_pred             EEeCEEEEeC
Confidence            9999999983

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.34  E-value=6.9e-12  Score=84.79  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=77.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCceEEcCCCcEE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLTSTGDTI  207 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~g~~~  207 (275)
                      +|.+|+|+|..+.  ..+.+++++++.+++++.+++++.+.+.+.++++||++++++.|++++..+ +.+.+.+++|+.+
T Consensus        30 gG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~  107 (117)
T d1onfa2          30 SGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIY  107 (117)
T ss_dssp             CSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEE
T ss_pred             CchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEE
Confidence            8899999999998  779999999999999999999999999999999999999999999998554 4567889999877


Q ss_pred             e-ecEEEEcC
Q 023957          208 N-ADCHFLCT  216 (275)
Q Consensus       208 ~-~d~vv~a~  216 (275)
                      + +|.|++|.
T Consensus       108 ~~~D~Vi~AI  117 (117)
T d1onfa2         108 EHFDHVIYCV  117 (117)
T ss_dssp             EEESEEEECC
T ss_pred             EeCCEEEEeC
Confidence            5 79999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.8e-12  Score=88.87  Aligned_cols=89  Identities=19%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CCcchhhHHHHHhhh--CCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc
Q 023957          129 GGPTGVELAGEIAVD--FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD  205 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~  205 (275)
                      +|.+|+|+|..+...  ..+.+++++.+.+.+++ .+++++.+.+.+.++++||++++++.|++++.+++...+.+++|+
T Consensus        45 gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~  124 (137)
T d1m6ia2          45 GGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR  124 (137)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCC
Confidence            899999999988642  24789999999999886 578889999999999999999999999999988888889999999


Q ss_pred             EEeecEEEEcCC
Q 023957          206 TINADCHFLCTG  217 (275)
Q Consensus       206 ~~~~d~vv~a~G  217 (275)
                      +++||.||+|+|
T Consensus       125 ~i~aD~Vi~A~G  136 (137)
T d1m6ia2         125 KVETDHIVAAVG  136 (137)
T ss_dssp             EEEESEEEECCC
T ss_pred             EEECCEEEEeec
Confidence            999999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.30  E-value=7.9e-12  Score=85.03  Aligned_cols=83  Identities=25%  Similarity=0.321  Sum_probs=75.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI  207 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~  207 (275)
                      +|.+|+|+|..++  ..+.+++++++.+.+++ .+++.+.+.+.+.++++||++++++.|+++...    .+.++||+++
T Consensus        38 gG~iG~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~----~v~l~dg~~i  111 (121)
T d1d7ya2          38 GGVIGLELAATAR--TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG----VVLLDDGTRI  111 (121)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT----EEEETTSCEE
T ss_pred             cchhHHHHHHHhh--cccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC----EEEECCCCEE
Confidence            8999999999999  56999999999999886 678899999999999999999999999988642    4788999999


Q ss_pred             eecEEEEcCC
Q 023957          208 NADCHFLCTG  217 (275)
Q Consensus       208 ~~d~vv~a~G  217 (275)
                      +||.||+|+|
T Consensus       112 ~~D~vi~a~G  121 (121)
T d1d7ya2         112 AADMVVVGIG  121 (121)
T ss_dssp             ECSEEEECSC
T ss_pred             ECCEEEEeeC
Confidence            9999999997

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.29  E-value=3.7e-12  Score=93.54  Aligned_cols=104  Identities=28%  Similarity=0.309  Sum_probs=65.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCcccccccccccc-cccccEEEEeeeeEeec
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD-YLVNGRIVASPAINITE   89 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   89 (275)
                      ++|+|||||++|+.+|.+|+ .  ..+|+|||+++.+...+..................... ....+.+........+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   82 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDP   82 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeee
Confidence            68999999999999999997 3  46899999998765432221111111111111100000 11244555555555543


Q ss_pred             C--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           90 N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        90 ~--~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      .  .+.+.+++.+.||++++|||..+..+.
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~  112 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDK  112 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred             ccceeecccceeeccceEEEEeccccchhh
Confidence            3  777888999999999999998866543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.28  E-value=2.7e-12  Score=102.37  Aligned_cols=41  Identities=32%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      ...+||+|||||++||++|++|+ +|.+|+||||.+..+...
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            34689999999999999999998 699999999998876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.26  E-value=3.9e-12  Score=86.03  Aligned_cols=85  Identities=20%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC--CcE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST--GDT  206 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~  206 (275)
                      +|+.|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.++++|++++++++|++++.  +.......+  +++
T Consensus        29 gG~~G~E~A~~l~--~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~~~~~~~~~  104 (115)
T d1lvla2          29 GGYIGLELGIAYR--KLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLANDGKGGQLR  104 (115)
T ss_dssp             CSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEECSSSCCCE
T ss_pred             CCHHHHHHHHHHh--hcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcC--CeEEEEEcCCCeEE
Confidence            8899999999998  5689999999999999999999999999999999999999999999963  333333333  357


Q ss_pred             EeecEEEEcCC
Q 023957          207 INADCHFLCTG  217 (275)
Q Consensus       207 ~~~d~vv~a~G  217 (275)
                      ++||.|++|+|
T Consensus       105 i~~D~vi~A~G  115 (115)
T d1lvla2         105 LEADRVLVAVG  115 (115)
T ss_dssp             ECCSCEEECCC
T ss_pred             EEcCEEEEecC
Confidence            99999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=5.7e-12  Score=94.50  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=64.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-ccccccccc------cccCCcccccc---------ccccccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLR------AMVEPSFGKRS---------VINHTDYLV   75 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~-~~~~~~~~~------~~~~~~~~~~~---------~~~~~~~~~   75 (275)
                      .|||+||||||||++||++++ .|.+++||+++.. .+.......      +.+........         .....+...
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            599999999999999999998 5999999998632 221111000      00000000000         011112234


Q ss_pred             ccEEEEeeeeEee--cC---eEEecCCeEEeCCEEEEccCCC
Q 023957           76 NGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHK  112 (275)
Q Consensus        76 ~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~lilatG~~  112 (275)
                      +..++..++.++.  .+   .|.+.+|..+.++.|||+||..
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            7788888888763  22   5778899999999999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=7.8e-12  Score=99.56  Aligned_cols=90  Identities=20%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCC--------CceEEc---CCCc--EEeecEEEEcCCCCCC-------ch------
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEG--------SDTYLT---STGD--TINADCHFLCTGKPVG-------SD------  223 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~--------~~~v~~---~~g~--~~~~d~vv~a~G~~~~-------~~------  223 (275)
                      +.+.++..+++++.++.+..+..+++        ...+..   .+++  .+.++.||+|+|-...       +.      
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            45566778999999999988765442        222332   3443  5789999999984321       11      


Q ss_pred             --hhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          224 --WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       224 --~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                        +....  +..+..-+++.+|++.+| +.|++|++|+++.
T Consensus       224 ~~mA~~a--Ga~l~~m~~iq~~~~g~t-~~~g~~a~G~~~~  261 (305)
T d1chua2         224 IAMAWRA--GCRVANCGGVMVDDHGRT-DVEGLYAIGEVSY  261 (305)
T ss_dssp             HHHHHHT--TCCEECSCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred             Eeecccc--ceeeEecceeEECCcccC-CCCCceecccEEE
Confidence              11122  335667788999999998 8999999999753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.24  E-value=5.4e-12  Score=86.28  Aligned_cols=88  Identities=10%  Similarity=0.069  Sum_probs=78.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc--CCC--
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG--  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g--  204 (275)
                      +|++|+|+|..+.  ..|.+++++++.+.+++.+++++.+.+.+.++++|++++.++.+++++.+++...+.+  .+|  
T Consensus        34 gG~IG~E~A~~~~--~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~  111 (125)
T d1ojta2          34 GGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPK  111 (125)
T ss_dssp             CSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCS
T ss_pred             CCHHHHHHHHHhh--cCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCe
Confidence            8999999999998  5699999999999999999999999999999999999999999999998777666654  333  


Q ss_pred             cEEeecEEEEcCCC
Q 023957          205 DTINADCHFLCTGK  218 (275)
Q Consensus       205 ~~~~~d~vv~a~G~  218 (275)
                      ++++||.|++|+|.
T Consensus       112 ~~i~~D~vl~A~GR  125 (125)
T d1ojta2         112 EPQRYDAVLVAAGR  125 (125)
T ss_dssp             SCEEESCEEECCCE
T ss_pred             EEEEcCEEEEecCC
Confidence            37999999999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=1.6e-11  Score=83.25  Aligned_cols=85  Identities=25%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC-CC--c
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-TG--D  205 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g--~  205 (275)
                      +|++|+|+|..+.  ..|.+++++++.+.+++.+++++.+.+.+.++++||++++++.|++++..++...+.+. +|  +
T Consensus        30 gG~ig~E~A~~l~--~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~  107 (117)
T d1ebda2          30 GGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETK  107 (117)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEE
T ss_pred             CCccceeeeeeec--ccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEE
Confidence            8999999999998  57999999999999999999999999999999999999999999999987777666553 44  4


Q ss_pred             EEeecEEEEc
Q 023957          206 TINADCHFLC  215 (275)
Q Consensus       206 ~~~~d~vv~a  215 (275)
                      ++++|.|+++
T Consensus       108 ~i~~D~Vlvs  117 (117)
T d1ebda2         108 TIDADYVLVT  117 (117)
T ss_dssp             EEEESEEEEC
T ss_pred             EEEeEEEEEC
Confidence            7999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.24  E-value=2.1e-11  Score=84.37  Aligned_cols=87  Identities=25%  Similarity=0.317  Sum_probs=76.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC--C-ceEEcCCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S-DTYLTSTG  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~~g  204 (275)
                      +|++|+|+|..+.  ..+.+++++++.+.+++ .+++.+.+.+.+.++++||++++++.|+.++...+  . ..+.+++|
T Consensus        43 gG~iG~E~A~~l~--~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G  120 (133)
T d1q1ra2          43 GGYIGLEVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG  120 (133)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS
T ss_pred             CchHHHHHHHHHH--hhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC
Confidence            8999999999998  56999999999999886 56778889999999999999999999999976543  2 23778999


Q ss_pred             cEEeecEEEEcCC
Q 023957          205 DTINADCHFLCTG  217 (275)
Q Consensus       205 ~~~~~d~vv~a~G  217 (275)
                      +++++|.||+|+|
T Consensus       121 ~~i~~D~vi~a~G  133 (133)
T d1q1ra2         121 TRLPADLVIAGIG  133 (133)
T ss_dssp             CEEECSEEEECCC
T ss_pred             CEEECCEEEEeeC
Confidence            9999999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2.6e-11  Score=82.64  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=74.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE--EcCCC--
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LTSTG--  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v--~~~~g--  204 (275)
                      +|++|+|+|..+.  ..|.+++++.+.+.+++.+++++.+.+.+.++++||++++++.|++++..++...+  .+.++  
T Consensus        31 ~G~ig~E~A~~l~--~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~  108 (122)
T d1v59a2          31 GGIIGLEMGSVYS--RLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKT  108 (122)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTT
T ss_pred             CCchHHHHHHHHH--hhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCC
Confidence            8899999999999  67999999999999999999999999999999999999999999999876665443  33332  


Q ss_pred             ---cEEeecEEEEc
Q 023957          205 ---DTINADCHFLC  215 (275)
Q Consensus       205 ---~~~~~d~vv~a  215 (275)
                         ++++||.|++|
T Consensus       109 ~~~~~ie~D~vlvA  122 (122)
T d1v59a2         109 NKQENLEAEVLLVA  122 (122)
T ss_dssp             TEEEEEEESEEEEC
T ss_pred             CCeEEEEeCEEEEC
Confidence               47999999986

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.3e-12  Score=100.78  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             HHHHHHhCCCEEEcCceeeeecCCCCCce-EE---cCCCc--EEeecEEEEcCCCC-----CC--chhhccc------cc
Q 023957          170 TRDWLISKKVDVKLGERVNLDSVSEGSDT-YL---TSTGD--TINADCHFLCTGKP-----VG--SDWLKDT------IL  230 (275)
Q Consensus       170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~d~vv~a~G~~-----~~--~~~~~~~------~~  230 (275)
                      +.+..+..+|+++.++.++++..+++.+. +.   ..+|+  .+.++.||+|||--     ..  +......      ..
T Consensus       141 l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         141 FQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            33444456899999999999877665443 32   45675  56899999999832     11  1111111      11


Q ss_pred             ccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          231 KDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       231 ~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      +.++.+-.++..++...+ ..+++|+.++++.
T Consensus       221 Ga~l~dme~iq~~p~~~~-~~~~~~~~~~~~~  251 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCET-RIKGLFAVGECSS  251 (311)
T ss_dssp             TCCEESCCEEECCTTSBC-SSBTEEECGGGEE
T ss_pred             ccceeecccccccccchh-cccCCCcCcceee
Confidence            223444567888888877 7899999999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.20  E-value=2e-10  Score=89.10  Aligned_cols=46  Identities=11%  Similarity=-0.099  Sum_probs=40.9

Q ss_pred             hCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957          176 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       176 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ..+..++.+..+..+...++.+.+.+.||+++.+|.+|.|.|....
T Consensus       108 ~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             HCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccc
Confidence            3578899999999999888888999999999999999999997653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.19  E-value=4.2e-11  Score=81.68  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce--E---EcCC
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT--Y---LTST  203 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~--v---~~~~  203 (275)
                      +|++|+|+|..++  ..+.+++++++.+.+++.+++++.+.+.+.++++|+++++++.+++++.+++...  +   ...+
T Consensus        30 gG~ig~E~A~~l~--~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~  107 (121)
T d1mo9a2          30 GSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG  107 (121)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE
T ss_pred             CCHHHHHHHHHHH--hcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCC
Confidence            8899999999998  5799999999999999999999999999999999999999999999987665432  2   2345


Q ss_pred             CcEEeecEEEEcCC
Q 023957          204 GDTINADCHFLCTG  217 (275)
Q Consensus       204 g~~~~~d~vv~a~G  217 (275)
                      +++++||.|++|+|
T Consensus       108 ~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         108 EMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEECSCEEECCC
T ss_pred             CEEEEcCEEEEEEC
Confidence            57899999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.2e-11  Score=81.53  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cCCCc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGD  205 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~  205 (275)
                      +|++|+|+|..+.  ..+.+++++++.+.+++.+++++.+.+.+.++++||++++++.+++++..+++..+.   ..+|+
T Consensus        30 gG~iG~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~  107 (125)
T d3grsa2          30 AGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR  107 (125)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTS
T ss_pred             CCccHHHHHHHHh--cCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCc
Confidence            8899999999999  579999999999999999999999999999999999999999999998776655433   23332


Q ss_pred             ------EEeecEEEEcCC
Q 023957          206 ------TINADCHFLCTG  217 (275)
Q Consensus       206 ------~~~~d~vv~a~G  217 (275)
                            .+++|.|++|+|
T Consensus       108 ~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         108 LPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CCEEEEEEEESEEEECSC
T ss_pred             CcCccccccCCEEEEEeC
Confidence                  578999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.17  E-value=7.1e-11  Score=80.56  Aligned_cols=86  Identities=20%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc--C-CC-
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--S-TG-  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~--~-~g-  204 (275)
                      +|++|+|+|..+.  ..|.+++++++.+.+++.+++++.+.+.+.+++.||++++++.+.+++..+++..+.+  . +| 
T Consensus        33 ~G~iglE~A~~~~--~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~  110 (123)
T d1dxla2          33 AGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE  110 (123)
T ss_dssp             CSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCC
T ss_pred             cchHHHHHHHHHH--hcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCe
Confidence            8899999999999  5699999999999999999999999999999999999999999999998777765543  2 33 


Q ss_pred             -cEEeecEEEEcC
Q 023957          205 -DTINADCHFLCT  216 (275)
Q Consensus       205 -~~~~~d~vv~a~  216 (275)
                       +.++||.|++|+
T Consensus       111 ~~~i~~D~vLvAA  123 (123)
T d1dxla2         111 QTIIEADVVLVSA  123 (123)
T ss_dssp             CEEEEESEEECCC
T ss_pred             EEEEEcCEEEEcC
Confidence             368999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.16  E-value=5.4e-11  Score=80.79  Aligned_cols=91  Identities=19%  Similarity=0.321  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (275)
                      ..++|+|||||+.|+.+|..|+ +|.+|+++|+.+.+...      ....... ..+..... ..+++++. ..+..+..
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~------~~~~~~~-~~~~~~l~-~~GV~i~~~~~v~~~~~  100 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR------AAPATLA-DFVARYHA-AQGVDLRFERSVTGSVD  100 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TSCHHHH-HHHHHHHH-TTTCEEEESCCEEEEET
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc------cCCHHHH-HHHHHHHH-HCCcEEEeCCEEEEEeC
Confidence            3579999999999999999998 79999999998875311      0010000 00000000 12556543 33444566


Q ss_pred             CeEEecCCeEEeCCEEEEccC
Q 023957           90 NEVLTAEGRRVVYDYLVIATG  110 (275)
Q Consensus        90 ~~v~~~~~~~~~~~~lilatG  110 (275)
                      ..+.+.+|+.+++|.+++|+|
T Consensus       101 ~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TEEEETTSCEEECSEEEECSC
T ss_pred             CEEEECCCCEEECCEEEEeeC
Confidence            688899999999999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.7e-11  Score=82.80  Aligned_cols=90  Identities=17%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEee-ee
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASP-AI   85 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~   85 (275)
                      ...+++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+....       .+..    .....+.+  .+++++... +.
T Consensus        18 ~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~-------d~~~----~~~~~~~l~~~GV~~~~~~~v~   86 (116)
T d1gesa2          18 PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-------DPMI----SETLVEVMNAEGPQLHTNAIPK   86 (116)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHHSCEEECSCCEE
T ss_pred             hhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc-------chhh----HHHHHHHHHHCCCEEEeCCEEE
Confidence            344579999999999999999998 699999999988754111       0100    00001111  145554332 22


Q ss_pred             Eeec--C---eEEecCCeEEeCCEEEEccC
Q 023957           86 NITE--N---EVLTAEGRRVVYDYLVIATG  110 (275)
Q Consensus        86 ~~~~--~---~v~~~~~~~~~~~~lilatG  110 (275)
                      .+..  .   .+.+++|+++.+|.+++|+|
T Consensus        87 ~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          87 AVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            3321  1   57778899999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=8.8e-11  Score=80.09  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEE
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI  207 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~  207 (275)
                      +|++|+|+|..+.  ..+.+++++++.+.+++ .+++++.+.+.+.++++|+++++++.+++++.++ ....+..||+++
T Consensus        38 gG~iG~E~A~~l~--~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~dg~~i  114 (123)
T d1nhpa2          38 SGYIGIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKVVTDKNAY  114 (123)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEEEESSCEE
T ss_pred             ChHHHHHHHHHhh--ccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEEEeCCCEE
Confidence            8899999999999  56999999999998876 5788999999999999999999999999998754 344446788899


Q ss_pred             eecEEEEcC
Q 023957          208 NADCHFLCT  216 (275)
Q Consensus       208 ~~d~vv~a~  216 (275)
                      +||.||+|.
T Consensus       115 ~~D~vi~aI  123 (123)
T d1nhpa2         115 DADLVVVAV  123 (123)
T ss_dssp             ECSEEEECS
T ss_pred             ECCEEEEEC
Confidence            999999973

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.14  E-value=7.6e-11  Score=80.36  Aligned_cols=82  Identities=23%  Similarity=0.337  Sum_probs=72.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  208 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  208 (275)
                      +|++|+|+|..+.  ..+.+++++++.+.+++ +++++.+.+.+.++++|+++++++++.+++.+.    + +.+++.++
T Consensus        40 gG~iG~E~A~~l~--~~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~----v-~~~~~~i~  111 (122)
T d1xhca2          40 GGFIGLELAGNLA--EAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANEEG----V-LTNSGFIE  111 (122)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECSSE----E-EETTEEEE
T ss_pred             CcHHHHHHHHHhh--cccceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE----E-EeCCCEEE
Confidence            9999999999999  56999999999998775 788999999999999999999999999997432    3 45677899


Q ss_pred             ecEEEEcCCC
Q 023957          209 ADCHFLCTGK  218 (275)
Q Consensus       209 ~d~vv~a~G~  218 (275)
                      +|.||+|+|.
T Consensus       112 ~D~vi~a~Gv  121 (122)
T d1xhca2         112 GKVKICAIGI  121 (122)
T ss_dssp             CSCEEEECCE
T ss_pred             CCEEEEEEEe
Confidence            9999999984

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.3e-10  Score=93.34  Aligned_cols=40  Identities=23%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      .+.+||+|||+|+|||+||++++ +|.+|+|+||.+..+.+
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            34689999999999999999998 69999999998877643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.08  E-value=5.4e-10  Score=81.64  Aligned_cols=134  Identities=19%  Similarity=0.151  Sum_probs=90.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcc----------hHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|..|+++|..|+...+..+++++++.+.+.......          ............++.+..+..+. +.  .....
T Consensus        10 gG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~--~~~~~   86 (186)
T d1fcda1          10 GGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATG-ID--PDKKL   86 (186)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEE-CC--TTTTE
T ss_pred             ccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEe-ee--eccce
Confidence            7889999999999877778999999887654321111          11111233456778877654443 32  23445


Q ss_pred             EEcCCCcEEeecEEEEcCCCCCCchhhccccccc-----ccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957          199 YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKD-----SLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  265 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~-----~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~  265 (275)
                      +.+.+++++++|.+|+|+|.+|+..++.......     ....++++.++.. ++.++.+++|++||++....
T Consensus        87 ~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~  159 (186)
T d1fcda1          87 VKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP  159 (186)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTT
T ss_pred             eecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccccCC
Confidence            7778899999999999999998877665433211     1223566666654 56568999999999986544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=6e-10  Score=75.66  Aligned_cols=86  Identities=14%  Similarity=0.022  Sum_probs=70.5

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC----CceEEcCC-
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG----SDTYLTST-  203 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~----~~~v~~~~-  203 (275)
                      +|++|+|+|..++  ..|.+|+++.+. .+++.+++++.+.+.+.++++||++++++.|++++..++    ...+...+ 
T Consensus        28 gG~iG~E~A~~l~--~lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~  104 (122)
T d1h6va2          28 ASYVALECAGFLA--GIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKST  104 (122)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECT
T ss_pred             CCccHHHHHHHHh--hcCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEEC
Confidence            8999999999999  569999999875 678899999999999999999999999999998865332    23343332 


Q ss_pred             --C--cEEeecEEEEcCC
Q 023957          204 --G--DTINADCHFLCTG  217 (275)
Q Consensus       204 --g--~~~~~d~vv~a~G  217 (275)
                        +  ..+++|.|++|+|
T Consensus       105 ~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2         105 NSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TSCEEEEEEESEEECCCC
T ss_pred             CCCcEEEEECCEEEEEeC
Confidence              2  2567999999987

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.01  E-value=8e-10  Score=80.89  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcE--EEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADV--TLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v--~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (275)
                      +.+|+|||||++|+.+|..|+ .|.++  ++++++....+....+.....................+++++.+ .+..++
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            457999999999999999997 46654  44444444333322222211111111111111111124555433 444554


Q ss_pred             cC--eEEecCCeEEeCCEEEEccCCCCCCCch
Q 023957           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (275)
Q Consensus        89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~~  118 (275)
                      ..  .+.+.+++++.||.+++|+|..|.....
T Consensus        83 ~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~  114 (183)
T d1d7ya1          83 PQAHTVALSDGRTLPYGTLVLATGAAPRAVLA  114 (183)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCEEE
T ss_pred             cccceeEecCCcEeeeeeEEEEEEEEcccccc
Confidence            43  7888899999999999999998776443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.98  E-value=3.7e-10  Score=87.40  Aligned_cols=41  Identities=29%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~   49 (275)
                      ||...+||+|||||++||++|++|+ +|++|+||||+...+.
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            5566789999999999999999998 7999999999875443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.9e-10  Score=91.05  Aligned_cols=39  Identities=18%  Similarity=0.361  Sum_probs=35.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      |+||+|||||++||+||+.|+ .|++|+|+|+++++|+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            589999999999999999998 699999999999998643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.96  E-value=5.1e-10  Score=77.27  Aligned_cols=91  Identities=24%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (275)
                      ..++|+|||||++|+.+|..|+ .|.+|+++|+.+.+....      ...... ..+.... -..+++++.+ .+..+..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~------~~~~~~-~~~~~~~-~~~GV~i~~~~~v~~i~~  105 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV------TAPPVS-AFYEHLH-REAGVDIRTGTQVCGFEM  105 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT------SCHHHH-HHHHHHH-HHHTCEEECSCCEEEEEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc------cchhhh-hhhhhcc-cccccEEEeCCeEEEEEE
Confidence            4579999999999999999998 799999999988753110      000000 0000000 0124555432 2233321


Q ss_pred             -------CeEEecCCeEEeCCEEEEccC
Q 023957           90 -------NEVLTAEGRRVVYDYLVIATG  110 (275)
Q Consensus        90 -------~~v~~~~~~~~~~~~lilatG  110 (275)
                             ..+.+++|+.+++|.+++|+|
T Consensus       106 ~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         106 STDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             eCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                   147788999999999999998

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.96  E-value=4.5e-10  Score=87.87  Aligned_cols=81  Identities=16%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             hCCCEEEcCceeeeecCCCCCceEEcCCC----cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCC
Q 023957          176 SKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ  251 (275)
Q Consensus       176 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~  251 (275)
                      ..++.+..+++++.+...++.+.+.+.+|    +++.+|++|.|-|......-.....         .............
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~---------~~~~~~~~~~~~~  188 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD---------QRPLRDPLPHWGR  188 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTT---------CCCCCCCCSCCCB
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccc---------ccccccccccccc
Confidence            46889999999999988888888877665    4799999999999765321111100         0000111111245


Q ss_pred             CCeEEeccccCCCC
Q 023957          252 KNIFAIGDITDIRV  265 (275)
Q Consensus       252 ~~v~a~Gd~~~~~~  265 (275)
                      ..+...||++....
T Consensus       189 ~~~~~~gda~h~~~  202 (288)
T d3c96a1         189 GRITLLGDAAHLMY  202 (288)
T ss_dssp             TTEEECTHHHHCCC
T ss_pred             CcceecccccceeC
Confidence            67899999986444

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.95  E-value=9.1e-10  Score=74.04  Aligned_cols=38  Identities=24%  Similarity=0.482  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+.+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            44589999999999999999998 699999999988764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.95  E-value=7.3e-10  Score=75.34  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeecCe
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITENE   91 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   91 (275)
                      ++++|||||+.|+.+|..|+ .|.+|+|+|+.+.+..    +    ++.... .+..... ..+++++.. .+..++.+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~----~----d~~~~~-~~~~~l~-~~GV~~~~~~~v~~~~~~~  102 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----L----DEELSN-MIKDMLE-ETGVKFFLNSELLEANEEG  102 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----C----CHHHHH-HHHHHHH-HTTEEEECSCCEEEECSSE
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC----C----CHHHHH-HHHHHHH-HCCcEEEeCCEEEEEeCCE
Confidence            68999999999999999998 6999999999886531    1    111100 0001000 025555443 344555555


Q ss_pred             EEecCCeEEeCCEEEEccCC
Q 023957           92 VLTAEGRRVVYDYLVIATGH  111 (275)
Q Consensus        92 v~~~~~~~~~~~~lilatG~  111 (275)
                      +.+ ++..+++|.+++|+|.
T Consensus       103 v~~-~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         103 VLT-NSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EEE-TTEEEECSCEEEECCE
T ss_pred             EEe-CCCEEECCEEEEEEEe
Confidence            544 6778999999999984

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=1.1e-10  Score=88.89  Aligned_cols=36  Identities=25%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEI   49 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~   49 (275)
                      .+|+|||||||||+||.+|+   .|++|+|||+.+.+|+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            48999999999999999986   3889999999998874

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.6e-10  Score=91.57  Aligned_cols=41  Identities=37%  Similarity=0.622  Sum_probs=36.8

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~   50 (275)
                      ..++.+|+|||||++||+||+.|+ .|++|+|+|+++.+|+.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            345679999999999999999998 69999999999998853

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.91  E-value=7.6e-10  Score=74.70  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-e
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-P   83 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~   83 (275)
                      ..+++++|||||+.|+.+|..|.    .|.+|+++|+.+.+....       .+    +......+.+  .+++++.. .
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~-------d~----~~~~~~~~~l~~~GI~v~~~~~   84 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF-------DS----ELRKQLTEQLRANGINVRTHEN   84 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTS-------CH----HHHHHHHHHHHHTTEEEEETCC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccc-------cc----hhhHHHHHHHhhCcEEEEcCCE
Confidence            34579999999999999997654    388999999987653111       00    1001111111  14555433 3


Q ss_pred             eeEeec--C---eEEecCCeEEeCCEEEEccC
Q 023957           84 AINITE--N---EVLTAEGRRVVYDYLVIATG  110 (275)
Q Consensus        84 ~~~~~~--~---~v~~~~~~~~~~~~lilatG  110 (275)
                      +..+..  +   .+.++++..+++|.+++|+|
T Consensus        85 v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          85 PAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            334432  1   57888999999999999998

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.89  E-value=3.3e-10  Score=92.55  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=34.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-------cCCcEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-------~g~~v~vie~~~~~~~~   50 (275)
                      .+||+||||||||++||+.|+       +|++|+||||...+|.+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            589999999999999999986       59999999999988744

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.86  E-value=9.5e-10  Score=87.48  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=35.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~   51 (275)
                      +++|+|||||++||+||+.|+ .|++|+|+|+++++|+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            579999999999999999998 699999999999999654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.85  E-value=1.9e-09  Score=72.86  Aligned_cols=40  Identities=25%  Similarity=0.394  Sum_probs=34.6

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      +...+.+++|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus        18 l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          18 FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             cccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            3345689999999999999999998 699999999988753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.80  E-value=8.2e-09  Score=70.04  Aligned_cols=88  Identities=22%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEe
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINI   87 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (275)
                      ..++|+|||||+.|+.+|..|+ .|.+|+++|+.+.+...      ..++..    .....+++  .+++++.. .+..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~------~~d~~~----~~~~~~~l~~~gv~~~~~~~v~~i   98 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV------YLDKEF----TDVLTEEMEANNITIATGETVERY   98 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TCCHHH----HHHHHHHHHTTTEEEEESCCEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc------ccchhh----HHHHHHHhhcCCeEEEeCceEEEE
Confidence            3579999999999999999998 79999999998764211      011110    00001111  14455432 23334


Q ss_pred             ecC---eEEecCCeEEeCCEEEEcc
Q 023957           88 TEN---EVLTAEGRRVVYDYLVIAT  109 (275)
Q Consensus        88 ~~~---~v~~~~~~~~~~~~lilat  109 (275)
                      ..+   .....+++++++|.+++|.
T Consensus        99 ~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          99 EGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             ECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EcCCCEEEEEeCCCEEECCEEEEEC
Confidence            322   3345678899999999873

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.79  E-value=3.9e-09  Score=70.91  Aligned_cols=86  Identities=14%  Similarity=0.252  Sum_probs=54.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEee
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (275)
                      .++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...           +.........+.+  .++++..+ .+..+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-----------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~   90 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-----------FDESVINVLENDMKKNNINIVTFADVVEIK   90 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-----------SCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-----------ccHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence            579999999999999999998 69999999998865311           1111101111111  14455432 223332


Q ss_pred             --c-C--eEEecCCeEE-eCCEEEEcc
Q 023957           89 --E-N--EVLTAEGRRV-VYDYLVIAT  109 (275)
Q Consensus        89 --~-~--~v~~~~~~~~-~~~~lilat  109 (275)
                        . .  .+.+.+|+.. .+|.+++|.
T Consensus        91 ~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          91 KVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             ESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence              1 1  5778888776 479999873

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6e-09  Score=72.21  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeE
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAIN   86 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (275)
                      .++++|||||++|+.+|..|+     .|.+|+++|+++.+...      ..+.... ..+....+ ..++++..+ .+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~------~~~~~~~-~~~~~~l~-~~GV~~~~~~~V~~  108 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK------ILPEYLS-NWTMEKVR-REGVKVMPNAIVQS  108 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT------TSCHHHH-HHHHHHHH-TTTCEEECSCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc------cCCHHHH-HHHHHHHH-hCCcEEEeCCEEEE
Confidence            468999999999999998884     38999999998865311      0011000 00000000 024555433 2333


Q ss_pred             eec--C--eEEecCCeEEeCCEEEEccC
Q 023957           87 ITE--N--EVLTAEGRRVVYDYLVIATG  110 (275)
Q Consensus        87 ~~~--~--~v~~~~~~~~~~~~lilatG  110 (275)
                      +..  .  .+.+++|+.+.+|.+++|+|
T Consensus       109 i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         109 VGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEecCCEEEEEECCCCEEECCEEEEeec
Confidence            332  2  68888999999999999998

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=1.3e-09  Score=83.08  Aligned_cols=39  Identities=15%  Similarity=0.088  Sum_probs=34.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-------CcEEEEcCCCCccccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-------ADVTLIDPKEYFEITW   51 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-------~~v~vie~~~~~~~~~   51 (275)
                      +++|+|||||||||+||++|. +|       ++|+|||+.+.+|+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~   48 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV   48 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee
Confidence            469999999999999999996 45       5899999999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.76  E-value=2.5e-09  Score=78.97  Aligned_cols=38  Identities=24%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCcccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEIT   50 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~   50 (275)
                      +++|+||||||+||+||++|+ .|+ +|+||||.+.++..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            479999999999999999998 698 59999999987743

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=2.4e-09  Score=83.64  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCccccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW   51 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~   51 (275)
                      ..+||+||||||+||+||++|+ + |++|+|||+++.+|+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            4589999999999999999985 4 99999999998887543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.75  E-value=6.5e-09  Score=69.98  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+++++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus        19 ~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          19 GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             hhcCCeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            345689999999999999999998 699999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.72  E-value=7.6e-09  Score=69.58  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-e
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-P   83 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~   83 (275)
                      ..+.+++|||||+.|+.+|..|+    ++.+|+++|+.+.+-..           +.........+.+  .++++..+ .
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-----------~d~~~~~~l~~~l~~~GV~v~~~~~   86 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-----------FDHTLREELTKQLTANGIQILTKEN   86 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-----------SCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-----------cchHHHHHHHHHHHhcCcEEEcCCE
Confidence            34579999999999999997765    36789999998765311           1111111111111  25566543 3


Q ss_pred             eeEeec--C---eEEecCCeEEeCCEEEEcc
Q 023957           84 AINITE--N---EVLTAEGRRVVYDYLVIAT  109 (275)
Q Consensus        84 ~~~~~~--~---~v~~~~~~~~~~~~lilat  109 (275)
                      +..+..  +   .+.+++|+++++|.+++|.
T Consensus        87 v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          87 PAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            334432  1   6888899999999999873

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.72  E-value=6.9e-09  Score=70.47  Aligned_cols=38  Identities=13%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ....+++|||||+.|+.+|..++ .|.+|+++|+.+.+.
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            44679999999999999999998 699999999988654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.9e-08  Score=68.38  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..+++++|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             hcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            34579999999999999999998 699999999988653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1e-08  Score=69.40  Aligned_cols=40  Identities=23%  Similarity=0.422  Sum_probs=34.7

Q ss_pred             ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      +...+++++|||||+.|+.+|..|+ .|.+|+|+|+++.+.
T Consensus        19 l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          19 LKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             cccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            3345689999999999999999998 699999999988754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.67  E-value=9.5e-09  Score=69.63  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .++|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999998 699999999987654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=7.3e-09  Score=81.33  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ++||+||||||+||++|..|+ .|++|+||||.+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            469999999999999999998 69999999998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.65  E-value=1.3e-08  Score=72.18  Aligned_cols=95  Identities=9%  Similarity=-0.174  Sum_probs=72.9

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  208 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  208 (275)
                      ++++|+|+|..++  ..|.+|+++.+.+.++...++.....+.+.+++.|+++++++.+.+++.+.  ..+  .+.....
T Consensus        49 gg~ig~e~A~~la--~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--v~l--~~~~~~~  122 (156)
T d1djqa2          49 TYFMAPSLAEKLA--TAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR--MEI--YNIWGDG  122 (156)
T ss_dssp             CSSHHHHHHHHHH--HTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTE--EEE--EETTCSC
T ss_pred             CChHHHHHHHHHH--HcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcc--eEE--Eeeeccc
Confidence            7899999999999  679999999999888777777788889999999999999999999998543  222  2222234


Q ss_pred             ecEEEEcCCCCCCchhhcccc
Q 023957          209 ADCHFLCTGKPVGSDWLKDTI  229 (275)
Q Consensus       209 ~d~vv~a~G~~~~~~~~~~~~  229 (275)
                      ++.+....|..|+........
T Consensus       123 ~~~v~~~~g~~~~~~~~~~~~  143 (156)
T d1djqa2         123 SKRTYRGPGVSPRDANTSHRW  143 (156)
T ss_dssp             SCCCCCCTTSCSSCCCCCCEE
T ss_pred             cceeeeeeEEEecccCCccCc
Confidence            566777777777665554443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=3.8e-08  Score=66.52  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ...+.+++|||||+.|+.+|..|+ .|.+|+|++++..
T Consensus        17 ~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~   54 (122)
T d1h6va2          17 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL   54 (122)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechh
Confidence            345578999999999999999998 6999999997643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.61  E-value=7.6e-09  Score=83.47  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh------cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ------FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~------~g~~v~vie~~~~~~   48 (275)
                      +..|||+||||||+||++|..|+      .|++|+||||.+...
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            34599999999999999999984      599999999987654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.56  E-value=1.9e-08  Score=81.68  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ...|||||||+|++|+.+|.+|+ .|++|+|+|+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            45699999999999999999998 79999999997653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.51  E-value=4.3e-08  Score=66.35  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ...+.+++|||||+.|+.+|..++ .|.+|+|+|+.+.+.
T Consensus        22 ~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          22 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             cccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            344679999999999999999998 699999999988754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3.1e-08  Score=78.52  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT   50 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~   50 (275)
                      ..+||+||||||+||+||++|+   .|++|+|+|+++.+|+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~   90 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG   90 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcce
Confidence            4589999999999999999997   39999999999988754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.44  E-value=6.3e-08  Score=78.04  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCccc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEI   49 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~   49 (275)
                      .+||||||+|+|||+||++|+     +|++|+||||.+..+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            489999999999999999884     4999999999887653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.25  E-value=5.7e-07  Score=72.74  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++||||||+|++|+.+|++|+ .|++|+|+|+...
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999999999998 7999999999754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.17  E-value=6.5e-07  Score=72.18  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .||+||||+|++|+.+|.+|+ .|.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            699999999999999999998 6999999999853

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.17  E-value=6.2e-07  Score=72.40  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      -||||||+|++|+.+|++|+ +|++|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            38999999999999999998 7999999999754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1e-05  Score=54.45  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC---C
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST---G  204 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g  204 (275)
                      +|.++++.|..|.  ....++++++|++.+.  ..+.+.+.+.+..+..++.++.++.+.++..++..+ .+++.+   +
T Consensus        35 gGdsA~e~A~~L~--~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~  110 (126)
T d1trba2          35 GGNTAVEEALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS  110 (126)
T ss_dssp             SSHHHHHHHHHHT--TTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTC
T ss_pred             CCHHHHHHHHHHh--hcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCC
Confidence            8889999999999  5689999999998752  344566667776777889999999999999876543 355433   1


Q ss_pred             ---cEEeecEEEEcCC
Q 023957          205 ---DTINADCHFLCTG  217 (275)
Q Consensus       205 ---~~~~~d~vv~a~G  217 (275)
                         +++++|-|+++.|
T Consensus       111 e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         111 DNIESLDVAGLFVAIG  126 (126)
T ss_dssp             CCCEEEECSEEEECSC
T ss_pred             ceEEEEECCEEEEEeC
Confidence               4699999999876

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.11  E-value=5.4e-07  Score=72.36  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ..||+||||||+||+.+|.+|+..++|+|||+...
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCCCCEEEEecCCC
Confidence            35999999999999999999986699999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.09  E-value=2e-07  Score=70.72  Aligned_cols=30  Identities=37%  Similarity=0.317  Sum_probs=25.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP   43 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~   43 (275)
                      ++|+|||||++||++|++|+ +|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            47999999999999999998 6887666655

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.03  E-value=1.9e-06  Score=70.06  Aligned_cols=36  Identities=28%  Similarity=0.544  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~   46 (275)
                      ...||+||||||.+|+.+|.+|. . +++|+|||+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34599999999999999999997 3 589999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.02  E-value=2e-06  Score=70.04  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~~   47 (275)
                      .+||+||||||++|+.+|.+|. .+ .+|+|||+....
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            4699999999999999999998 45 799999998753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.1e-05  Score=52.89  Aligned_cols=81  Identities=28%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcC---C
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---T  203 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~  203 (275)
                      +|.++++.|..|.  ....+++++++++.+      ...+.+.+.+++ .+|++++++++.++..+++.+ .+++.   +
T Consensus        38 gG~sA~~~A~~L~--~~a~~V~li~r~~~~------~~~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~t  109 (126)
T d1fl2a2          38 GGNSGVEAAIDLA--GIVEHVTLLEFAPEM------KADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVS  109 (126)
T ss_dssp             CSHHHHHHHHHHH--TTBSEEEEECSSSSC------CSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTT
T ss_pred             CCHHHHHHHHhhh--ccCCceEEEeccccc------ccccccccccccccceeEEcCcceEEEEccccceeeEEEEECCC
Confidence            7889999999998  568899999998865      233444455555 469999999999998875443 35543   3


Q ss_pred             C--cEEeecEEEEcCC
Q 023957          204 G--DTINADCHFLCTG  217 (275)
Q Consensus       204 g--~~~~~d~vv~a~G  217 (275)
                      |  +++++|.++++.|
T Consensus       110 ge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2         110 GDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CCEEEEECSEEEECSC
T ss_pred             CCEEEEECCEEEEEeC
Confidence            4  3799999999988

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.90  E-value=3.5e-05  Score=53.62  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~   47 (275)
                      ...+|+|||||.+|+-+|..|. .|.+ |+++.+.+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            3568999999999999998876 5765 8899887654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.5e-05  Score=50.53  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|+|.|.+|+++|..|. .|.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            468999999999999999997 7999999998664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=3.2e-05  Score=54.09  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CeEEEE--cCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           14 KRVVVI--GGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        14 ~~vvII--GgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      ..++|+  |||..|+.+|..|+ .|.+|+|+++.+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            556666  99999999999998 799999999988654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=8.7e-05  Score=52.07  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             EEEEEeCCC-cccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc--EEeecEEEEcCCC
Q 023957          148 KVTLVHKGS-RLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGK  218 (275)
Q Consensus       148 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~  218 (275)
                      +++.+.... .+...............++..|++++.++.+.+++.  +.+.+.. +|+  .++||.||+|+|.
T Consensus        91 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~~~~-~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2          91 QIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLHVVI-NGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             EEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEEEEE-TTEEEEECCSEEEECCCE
T ss_pred             eEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCEEec-CCeEEEEECCEEEECCCC
Confidence            344444332 333345555666777888999999999999999874  3344433 343  6899999999994

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.63  E-value=0.00011  Score=49.39  Aligned_cols=80  Identities=20%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCC--Cc-eEEc---
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG--SD-TYLT---  201 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~--~~-~v~~---  201 (275)
                      +|.++++.|..|.  ....+|++++|++.+.      ..+.+.+.+.+ .+|++++++++.++..++.  .+ .+.+   
T Consensus        42 gGdsA~e~A~~L~--~~a~~V~li~r~~~~r------a~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~  113 (130)
T d1vdca2          42 GGDSAMEEANFLT--KYGSKVYIIHRRDAFR------ASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV  113 (130)
T ss_dssp             CSHHHHHHHHHHT--TTSSEEEEECSSSSCC------SCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET
T ss_pred             CchHHHHHHHHHh--CCCCcEEEEEeccccc------cchhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEEC
Confidence            7889999999998  6789999999998762      23444444444 4699999999999987653  22 2332   


Q ss_pred             CCC--cEEeecEEEEcC
Q 023957          202 STG--DTINADCHFLCT  216 (275)
Q Consensus       202 ~~g--~~~~~d~vv~a~  216 (275)
                      .+|  +++++|-|+++.
T Consensus       114 ~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2         114 VTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TTCCEEEEECSEEEECS
T ss_pred             CCCCEEEEECCEEEEEC
Confidence            233  479999999873

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.57  E-value=2.9e-05  Score=55.49  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.|+|||+|..|..+|.+|. .|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            478999999999999999998 6999999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.53  E-value=4.2e-05  Score=54.89  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +++|+|||+|..|+++|..|+ .|++|+++++++.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            368999999999999999998 7999999999753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=8.7e-05  Score=52.08  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD   37 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~   37 (275)
                      ..++|+|||||..|+-+|..+. .|.+
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            3579999999999999999997 4654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=9.8e-05  Score=52.60  Aligned_cols=78  Identities=23%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc-----------CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  197 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  197 (275)
                      +|+.|++.|..++  ..|.+++++++.+.+...           ...++.+.+.+.+++.|+++++|+.|+.        
T Consensus        51 aGPAGL~AA~~la--~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~--------  120 (179)
T d1ps9a3          51 AGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--------  120 (179)
T ss_dssp             CSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--------
T ss_pred             ccHHHHHHHHHHH--hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc--------
Confidence            8899999999998  789999999998765321           1124566777888889999999998742        


Q ss_pred             eEEcCCCcEEeecEEEEcCCCCCCc
Q 023957          198 TYLTSTGDTINADCHFLCTGKPVGS  222 (275)
Q Consensus       198 ~v~~~~g~~~~~d~vv~a~G~~~~~  222 (275)
                           +. ...+|.||+|+|..|..
T Consensus       121 -----~~-~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 -----DQ-LQAFDETILASGIPNRA  139 (179)
T ss_dssp             -----SS-SCCSSEEEECCCEECCT
T ss_pred             -----cc-cccceeEEEeecCCCcc
Confidence                 11 24689999999987653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.0007  Score=45.07  Aligned_cols=37  Identities=41%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~~~   48 (275)
                      ..++|+|||||.+++-.|..|.+ ..+|+++-+.+.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            46899999999999999999985 67899999887654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.33  E-value=0.00096  Score=42.97  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~   45 (275)
                      ..++|+|||+|.+|+-.|..|++ ..+++++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            35899999999999999999984 55666665544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=8.4e-05  Score=50.27  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=30.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            47999999999999999997 7999999999774

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=0.00019  Score=51.74  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             CCcchhhHHHHHhhhCCCC-EEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|++|+++|..|.  ..|. +|+++++.+.+..         .................+.++.....+....       
T Consensus        12 aGpaGl~aA~~l~--~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------   82 (196)
T d1gtea4          12 AGPASISCASFLA--RLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE-------   82 (196)
T ss_dssp             CSHHHHHHHHHHH--HTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS-------
T ss_pred             ChHHHHHHHHHHH--HCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce-------
Confidence            8899999999998  4465 6999999887643         1122233444445556678887776653322       


Q ss_pred             EEcCCCcEEeecEEEEcCCCCCCch--hhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCC
Q 023957          199 YLTSTGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  266 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~  266 (275)
                      ....+.....++.+++++|......  ..............+....+.. +++ +.+.+|+.||+++.++.
T Consensus        83 ~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~vigg~~~  152 (196)
T d1gtea4          83 ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMANT  152 (196)
T ss_dssp             BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCCC
T ss_pred             eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-CcccccccccccCCcch
Confidence            1112223355788999998653222  1111111222334455555544 676 89999999999876554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.29  E-value=0.00015  Score=50.25  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             cccCCCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957            8 QSEGKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus         8 ~~~~~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      .|++++++|.|||+|-.|.++|+.|. .+. +++++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            56777899999999999999998887 454 7999997764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00044  Score=46.12  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~~~   48 (275)
                      ..++|+|||||-+++-.|..|.+ ..+|+++-|.+.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            46899999999999999999985 77899999988764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.17  E-value=0.00022  Score=50.33  Aligned_cols=34  Identities=32%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +-+|+|||+|.+|+.||..+. .|..|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            469999999999999998887 6999999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00023  Score=49.99  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|||+|-.|...|..|. .|++|++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            47999999999999999998 6999999998774

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.0018  Score=47.61  Aligned_cols=90  Identities=14%  Similarity=0.040  Sum_probs=57.6

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCc-c---------cCc-----------CCcc---hHHHHHHHHHh-CCCEEEc
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR-L---------LEF-----------IGPK---AGDKTRDWLIS-KKVDVKL  183 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~---------~~~-----------~~~~---~~~~~~~~~~~-~gv~i~~  183 (275)
                      +|+.|++.|...+  +.+.++.++..... +         ...           ..+.   ....+.+.+++ .++.++.
T Consensus        10 gG~AG~eAA~~aA--R~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL~i~q   87 (230)
T d2cula1          10 AGFSGAETAFWLA--QKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLFQ   87 (230)
T ss_dssp             CSHHHHHHHHHHH--HTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             cCHHHHHHHHHHH--HCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCHHHHh
Confidence            7788999998888  67888888876421 1         000           0111   11223344443 4788887


Q ss_pred             CceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          184 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       184 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                      ...+.-+..++....|.+.+|.++.|+.||+++|...
T Consensus        88 ~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          88 ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             ccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            6544444444444568899999999999999999643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.12  E-value=0.00027  Score=49.14  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +-+|+|||+|.+|+.|+..++ .|..|+++|.+..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            579999999999999999988 6999999998653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00036  Score=50.28  Aligned_cols=33  Identities=39%  Similarity=0.573  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||+|..|...|..++ .|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            68999999999999998887 7999999998874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.99  E-value=0.00022  Score=48.19  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=30.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++++|||+|..|..+|..|. .|++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            47899999999999999998 7999999998764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.00034  Score=50.92  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|+.+|..|+ +|++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            46999999999999999998 7999999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.82  E-value=0.0025  Score=43.83  Aligned_cols=85  Identities=18%  Similarity=0.086  Sum_probs=54.8

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EE------c
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL------T  201 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~------~  201 (275)
                      +|.+|+++|..+.. ...+.++++.+++....    .........+...+++++.+..+.++...++... +.      .
T Consensus        53 GGdtA~D~A~~a~r-~GA~~V~vi~rr~~~~~----~a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e~d  127 (153)
T d1gtea3          53 AGDTAFDCATSALR-CGARRVFLVFRKGFVNI----RAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQD  127 (153)
T ss_dssp             SSHHHHHHHHHHHH-TTCSEEEEECSSCGGGC----CSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CChhHHHHHHHHHH-cCCcceeEEEeCChhhh----ccchhheeecccccceeEeccccEEEEecCCceEEEEEEEeeEC
Confidence            88999999987663 44567889888765321    1222333345567899998888777765443221 11      1


Q ss_pred             CCC---------cEEeecEEEEcCCC
Q 023957          202 STG---------DTINADCHFLCTGK  218 (275)
Q Consensus       202 ~~g---------~~~~~d~vv~a~G~  218 (275)
                      ++|         .+++||.||+|.|.
T Consensus       128 ~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         128 ETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             TTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             CCCCEecCCCCEEEEECCEEEECcCc
Confidence            222         26899999999983

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.81  E-value=0.00046  Score=49.43  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      -++|.|||+|..|...|..+. .|++|+++|+++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            367999999999999997776 7999999999764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.00095  Score=45.99  Aligned_cols=38  Identities=21%  Similarity=0.492  Sum_probs=32.8

Q ss_pred             ccCCCCeEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957            9 SEGKNKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus         9 ~~~~~~~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |....++|.||| .|..|.+.|..|+ .|++|+++|++..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            444567999999 6999999999998 6999999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.78  E-value=0.00072  Score=46.25  Aligned_cols=35  Identities=23%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      .+++|.|||+|..|.++|+.|. ++  .+++++|.++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            3579999999999999999997 45  47999998763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.77  E-value=0.00042  Score=49.77  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+|+|||+|--|.+.|..|. .|++|+++.+++.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            468999999999999999998 5899999998754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.71  E-value=0.0016  Score=48.03  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|||+|-+|+-+|..|. .+.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            4589999999999999999997 577766665544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.68  E-value=0.00087  Score=48.35  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..||.+|..+++|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence            479999999999999988888999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.63  E-value=0.0011  Score=43.20  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||||..|..-|..|. .|.+|++++....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            4589999999999999999987 6999999987553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.53  E-value=0.0013  Score=45.88  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||.|..|.+.|..|+ .|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            37999999999999999997 799999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0011  Score=45.52  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ..++|+|||||..|+.-|..|. .|.+|+|+.++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4589999999999999999887 69999999653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.41  E-value=0.0027  Score=43.92  Aligned_cols=34  Identities=32%  Similarity=0.460  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      .+++|.|||+|..|.++|+.|. +|+  ++.++|.++
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4579999999999999999997 555  799999865

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.002  Score=52.76  Aligned_cols=57  Identities=9%  Similarity=-0.132  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHhCCCEEEcCceeeeecCC--CCCc-eEEcCCCcEEeecEEEEcCCCCCC
Q 023957          165 KAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTSTGDTINADCHFLCTGKPVG  221 (275)
Q Consensus       165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  221 (275)
                      ++.+.+-+..--.|..+++++.|..+..+  ++.+ .+..++|+++.|+.||....+.|.
T Consensus       377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         377 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            67777777777789999999999998653  3333 466788999999999999887764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.0024  Score=43.64  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      ...+|.|||+|..|.++|+.|. .+  -++.|+|.++.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            4579999999999999999997 44  37999997653

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.21  E-value=0.0018  Score=43.94  Aligned_cols=79  Identities=15%  Similarity=0.052  Sum_probs=49.6

Q ss_pred             HHHhhhCCCCEEEEEeCCCcccC--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEc
Q 023957          138 GEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  215 (275)
Q Consensus       138 ~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  215 (275)
                      ..++......++.++...+....  .+.+.+.+.+.+.+++.||+++.+.....++.+.....+++.+|+++++|++++.
T Consensus        60 ~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          60 YYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             HHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            34444444567777765543211  1112234445555677899999887654444445566788899999999999886


Q ss_pred             C
Q 023957          216 T  216 (275)
Q Consensus       216 ~  216 (275)
                      .
T Consensus       140 P  140 (141)
T d1fcda2         140 P  140 (141)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.19  E-value=0.0024  Score=45.26  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ++|.|||+|.-|.+.|..|. .|++|+++.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            47999999999999999998 69999999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.19  E-value=0.0031  Score=42.75  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=28.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ++|.|||+|..|.++|+.|. ++. +++++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            58999999999999999887 444 8999997664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.09  E-value=0.0035  Score=43.84  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ....|+|+|+|+.|+.++..++ .|.+|+++|+++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            3468999999999999998887 7999999998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0035  Score=43.82  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ....|+|+|+|+.|+.++..++ .|.+|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3468999999999999998887 6999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0031  Score=44.21  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|+++.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            3458999999999999999888 687 6999997653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.98  E-value=0.0037  Score=42.51  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=28.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      ++|.|||+|..|.++|+.|. ++  .+++++|.++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            68999999999999999887 45  37999997653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.96  E-value=0.0046  Score=41.83  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=27.1

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      .+|.|||+|..|.++|+.|. ++.  ++.|+|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999999987 443  7999997764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.96  E-value=0.0057  Score=40.64  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~~~   48 (275)
                      ..++|+|||||-+++-.|.+|.+ -.+|+++-|.+.+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            46899999999999999999985 67899999988765

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.94  E-value=0.0041  Score=46.78  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=55.4

Q ss_pred             CCCcEEeecEEEEcCCCCCCchhhcccc--------cccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957          202 STGDTINADCHFLCTGKPVGSDWLKDTI--------LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  268 (275)
Q Consensus       202 ~~g~~~~~d~vv~a~G~~~~~~~~~~~~--------~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~  268 (275)
                      .+|++++||.|++|+|.+|+.+.+....        ++++++++|+|.||+++|| +.|+|||+|||++.|....
T Consensus       167 ~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~~~~l~~  240 (261)
T d1mo9a1         167 AAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGGPMEMF  240 (261)
T ss_dssp             ETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCSSCSHH
T ss_pred             cccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCCCcccHH
Confidence            3678899999999999999876555432        3568899999999999999 9999999999998876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.89  E-value=0.004  Score=43.35  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ...+|+|+|+|+.|+.++..++ .|.+|+++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3468999999999999998887 699999999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0054  Score=36.51  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      +.|.|+|||--|-..+...+ .|+++.+++.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            57999999999999999998 59999999987653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0078  Score=38.73  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+|.|+|||.-|...|..++ .|+++.++|+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            468999999999999999998 5999999998775

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0069  Score=41.73  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      +.+|.|||+|..|.++|+.|. +++  +++|+|.++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            458999999999999999997 443  799999765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.82  E-value=0.0058  Score=41.37  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=27.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      .+|.|||+|..|.++|+.|. ++.  +++|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999987 554  799999765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.74  E-value=0.0072  Score=44.35  Aligned_cols=122  Identities=14%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC----------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  198 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  198 (275)
                      +|+.|+.+|..|+....+.+|+++++.+.+..          .....+.......+++.|++++.++.|..-        
T Consensus         9 aGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------   80 (230)
T d1cjca2           9 SGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRD--------   80 (230)
T ss_dssp             CSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTT--------
T ss_pred             ccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCcc--------
Confidence            78899999999986667889999999876531          112234455666777889999988876211        


Q ss_pred             EEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957          199 YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  262 (275)
Q Consensus       199 v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~  262 (275)
                      +...+ -.-.+|.+++|+|..+..... ..+.  ..............+..+.+..+..|+...
T Consensus        81 ~~~~~-l~~~~d~v~~a~Ga~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  140 (230)
T d1cjca2          81 VTVQE-LQDAYHAVVLSYGAEDKSRPI-DPSV--PFDPKLGVVPNMEGRVVDVPGLYCSGWVKR  140 (230)
T ss_dssp             BCHHH-HHHHSSEEEECCCCCEECCCC-CTTS--CCBTTTTBCCEETTEETTCTTEEECTHHHH
T ss_pred             ccHHH-HHhhhceEEEEeecccccccc-cccc--cccccccccccccceeeccccccccccccc
Confidence            00000 012479999999986532211 1111  111111222222223335677777776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.0042  Score=43.96  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..+|+|+|+|+.|+.++..++ .|. +|+++|+++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            468999999999999998887 687 7999998663

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0099  Score=38.92  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCCh-----------HHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           11 GKNKRVVVIGGGV-----------AGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        11 ~~~~~vvIIGgG~-----------aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +..++|+|||+||           ++..|+.+|+ .|++++++..++.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3458999999997           6777788888 5999999998874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0084  Score=41.87  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|+|+|=++-++++.|. .|.+++|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4579999999999999999998 688999998865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.49  E-value=0.0092  Score=40.30  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      ++|.|||+|-.|.++|+.|. .+  -++.|+|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            37999999999999999987 44  48999998774

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.48  E-value=0.0052  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             CeEEEE-cCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVI-GGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvII-GgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|| |+|-.|.+.|..|. .|++|++..|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            369999 66999999999998 6999999998763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.45  E-value=0.008  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      ++|.|||+|-.|.++|+.|. ++.  ++.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            47999999999999999987 443  6999997653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.015  Score=37.57  Aligned_cols=35  Identities=14%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCh-----------HHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGV-----------AGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~-----------aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..++|+|||+||           ++..|+.+|+ .|++++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            457899999995           6778888888 6999999998874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.39  E-value=0.0085  Score=42.02  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ....|+|+|+|+.|++++..++ .|. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3468999999999999999998 686 699999865

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.0093  Score=37.22  Aligned_cols=38  Identities=21%  Similarity=0.138  Sum_probs=32.2

Q ss_pred             cccCCCCeEEEEcCChHHHHH-HHHhh-cCCcEEEEcCCC
Q 023957            8 QSEGKNKRVVVIGGGVAGSLV-AKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus         8 ~~~~~~~~vvIIGgG~aGl~a-A~~L~-~g~~v~vie~~~   45 (275)
                      +++...++|-+||-|=+|+++ |..|. +|++|+..|...
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            355667899999999999999 77776 799999999764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0091  Score=41.56  Aligned_cols=35  Identities=29%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ....|+|+|+|+.|+.++..++ .|.++++++..+.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            3468999999999999998887 7999989887653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.34  E-value=0.0076  Score=40.85  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=27.7

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g--~~v~vie~~~~   46 (275)
                      ++|.|||| |..|.++|+.|. ++  -++.|+|.++.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            37999996 999999999987 55  38999998754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.24  E-value=0.011  Score=41.07  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~   46 (275)
                      ++|.|||.|..|.+.|+.|+ .|+  +|+.+|++..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            47999999999999999997 464  6888898753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.08  E-value=0.012  Score=40.69  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|-+||-|..|...|..|. .|++|.++|+++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            57999999999999999997 6999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.012  Score=40.10  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +|+|+|.|..|..++..|. .|.+|+++|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            6999999999999999997 6999999998763

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.00  E-value=0.0096  Score=41.12  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|-|||-|..|...|..|. .|++|+++|+++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            36999999999999999997 7999999998764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.99  E-value=0.02  Score=38.91  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=27.9

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      +.+|.|||+|..|.++|+.|. ++. ++.|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            358999999999999998776 343 7999998664

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.99  E-value=0.015  Score=40.69  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ....|+|+|+|+.|+.++..++ .|. +|++.|.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            3468999999999999999998 687 577778765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.98  E-value=0.054  Score=34.26  Aligned_cols=67  Identities=9%  Similarity=0.045  Sum_probs=43.0

Q ss_pred             CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957          129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  208 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  208 (275)
                      +|.+|.++|..|.  ..+++++++.+++.....              ..++..  ...+.+++..  ...+.+.||+.+.
T Consensus        40 ~g~Sa~dia~~l~--~~ak~v~~~~~r~~~~~~--------------~~~~~~--~~~i~~~~~~--~~~v~~~dG~~~~   99 (107)
T d2gv8a2          40 GASSANDLVRHLT--PVAKHPIYQSLLGGGDIQ--------------NESLQQ--VPEITKFDPT--TREIYLKGGKVLS   99 (107)
T ss_dssp             SSHHHHHHHHHHT--TTSCSSEEEECTTCCSCB--------------CSSEEE--ECCEEEEETT--TTEEEETTTEEEC
T ss_pred             CCCCHHHHHHHHH--HhcCEEEEEEecCccccc--------------ccccee--cCCeeEEecC--CCEEEEcCCCEEe
Confidence            7889999999998  456666666665543210              112222  2334555433  3458889999887


Q ss_pred             -ecEEEEc
Q 023957          209 -ADCHFLC  215 (275)
Q Consensus       209 -~d~vv~a  215 (275)
                       .|.||+|
T Consensus       100 ~vD~Ii~C  107 (107)
T d2gv8a2         100 NIDRVIYC  107 (107)
T ss_dssp             CCSEEEEC
T ss_pred             CCCEEEEC
Confidence             6999987

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.91  E-value=0.00089  Score=49.72  Aligned_cols=36  Identities=11%  Similarity=0.233  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~   48 (275)
                      .++|+|||||..|+-+|..|+ .|.+|+++++.+...
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            468999999999999999998 599999999988764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.85  E-value=0.016  Score=40.23  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      .+++|+|+|+|=++-++++.|. .|. +++|+.|+..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            4578999999999999999998 675 7999988653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.83  E-value=0.013  Score=39.53  Aligned_cols=31  Identities=29%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             eEEEEcC-ChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023957           15 RVVVIGG-GVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (275)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~L~-~g~--~v~vie~~~   45 (275)
                      +|.|||| |..|.++|+.|. ++.  +++++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 999999999997 453  699999765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.018  Score=38.68  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=27.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      ++|.|||+|-.|.++|+.|. ++  -++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47999999999999999887 44  4799999765

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.019  Score=41.27  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|+|+|| |..|..++.+|. +|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            468999996 999999998876 799999998865

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.62  E-value=0.019  Score=40.19  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|-|||-|..|...|.+|. .|++|.++|++..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            47999999999999999997 7999999998653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.02  Score=44.97  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             cCCCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           10 EGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        10 ~~~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      |+.+++|+|.|| |+.|..++..|. +|++|+++++...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            345678999995 999999999987 7999999986543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.57  E-value=0.017  Score=40.00  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ....|+|+|+|+.|+.++..++ .|.+|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            3468999999999999988887 689999998755

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.55  E-value=0.017  Score=41.18  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ...+|+|+|+|+.|+.++..++ .|. +|+++|..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3468999999999999998887 565 788888754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.39  E-value=0.023  Score=43.32  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+|+|+|| |..|...+.+|. +|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            457999997 999999999887 7999999998654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.37  E-value=0.024  Score=38.58  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=29.2

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|.|||.|..|.+.|..|. .|++++++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            37999999999999999997 6999999987664

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.37  E-value=0.026  Score=39.52  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~   46 (275)
                      ....|+|+|+|+.|+.++..++ .| .+|+++|.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3456999999999999999998 67 57999998664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.29  E-value=0.028  Score=38.58  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ...+|+|||+|-.|-.+|.+|. +|. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4578999999999999999998 687 599988763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.27  E-value=0.025  Score=42.75  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~~   47 (275)
                      ++++|+|+|| |..|-.++..|. .|++|++++|++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3578999998 999999999986 79999999987653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.24  E-value=0.014  Score=38.41  Aligned_cols=34  Identities=21%  Similarity=0.166  Sum_probs=26.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh--cCCc-EEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ--FSAD-VTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~--~g~~-v~vie~~~~   46 (275)
                      +++|+|+|||-+|.+.+.++.  .+++ +.+||.++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            468999999999999998886  4777 455565543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.12  E-value=0.031  Score=39.06  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=30.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..|-|||-|..|...|..|. .|++|+++|+++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            47999999999999999997 6999999998774

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.02  E-value=0.022  Score=42.79  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +++|+|.|| |+.|-..+.+|. +|++|+.++++.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            357999998 999999999997 799999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.90  E-value=0.034  Score=38.79  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=28.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ...|+|+|+|+.|+.++..++ .|. +|+++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            457999999999999999998 675 688888765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.04  Score=37.09  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=26.2

Q ss_pred             CeEEEEc-CChHHHHHHHHhh-c---CCcEEEEcCCC
Q 023957           14 KRVVVIG-GGVAGSLVAKSLQ-F---SADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIG-gG~aGl~aA~~L~-~---g~~v~vie~~~   45 (275)
                      ++|.||| +|..|.++|+.|. +   ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 5999999999875 2   45799999754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.036  Score=37.95  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.|+|+|-|..|-.+|..|+ .|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4579999999999999999999 799999999876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.43  E-value=0.049  Score=36.99  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=28.3

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ++|.|||.|-.|.+.|..|. .++++++.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            37999999999999999887 699999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.35  E-value=0.048  Score=37.94  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcE-EEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADV-TLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v-~vie~~~   45 (275)
                      ...+|+|+|+|+.|++++..++ .|.++ ++.|.++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            3468999999999999998887 57764 5556544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.32  E-value=0.035  Score=36.50  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=27.3

Q ss_pred             CeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~   46 (275)
                      ++|+|+|.|..|..++..|+ +.+++++|.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchH
Confidence            46999999999999999995 567888988765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.17  E-value=0.043  Score=37.44  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.++|+|=|..|-.+|..|+ .|.+|+|.|.+|.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            4589999999999999999999 7999999998874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.07  E-value=0.037  Score=38.46  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|+|+|=++-++++.|. .+.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4578999999999999999987 567899998875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.04  E-value=0.063  Score=37.43  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~   45 (275)
                      ..++|+|+|+|-++-++++.|....+++|+.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhhh
Confidence            4579999999999999999998533899998864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.95  E-value=0.13  Score=38.63  Aligned_cols=56  Identities=11%  Similarity=0.012  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHhCCCEEEcCce-eeeecCCCCCceEEc-CCCc--EEeecEEEEcCCCCCC
Q 023957          166 AGDKTRDWLISKKVDVKLGER-VNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVG  221 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~-v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~  221 (275)
                      +.+.+.+.+++.+..+..+.. +..+..+++...+.+ .+|+  ++.||+||.|.|....
T Consensus       105 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~  164 (292)
T d1k0ia1         105 VTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (292)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCc
Confidence            445556666777766666654 455555666666665 4554  5789999999998753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.93  E-value=0.061  Score=35.99  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=25.2

Q ss_pred             eEEEEc-CChHHHHHHHHhh-cCC--cEEEEcCC
Q 023957           15 RVVVIG-GGVAGSLVAKSLQ-FSA--DVTLIDPK   44 (275)
Q Consensus        15 ~vvIIG-gG~aGl~aA~~L~-~g~--~v~vie~~   44 (275)
                      +|.||| +|..|.++|+.|. ++.  ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 6999999999997 443  69999853

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.58  E-value=0.069  Score=36.14  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             CeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~   46 (275)
                      ++|.+||+|..|.+.|..|. .| +++.+++|++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            37999999999999998875 44 89999998763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.082  Score=36.98  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..++|+|+|+|-+|-++++.|. .|. +++|+.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3579999999999999999997 555 7999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.50  E-value=0.08  Score=36.66  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=27.6

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~   46 (275)
                      ...|+|+|+|+.|++++..++ . +.+|+.+++.+.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            356999999999999998887 4 557888887663

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.26  E-value=0.082  Score=37.30  Aligned_cols=35  Identities=34%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.|+|.| +|-.|..+|..|. .|.+|++++|+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            468899999 5999999999987 7999999998763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.96  E-value=0.12  Score=37.58  Aligned_cols=42  Identities=10%  Similarity=0.049  Sum_probs=27.5

Q ss_pred             CCCEEEcCceeeeecCCCCC--ce-EEcC---------------CC--cEEeecEEEEcCCC
Q 023957          177 KKVDVKLGERVNLDSVSEGS--DT-YLTS---------------TG--DTINADCHFLCTGK  218 (275)
Q Consensus       177 ~gv~i~~~~~v~~i~~~~~~--~~-v~~~---------------~g--~~~~~d~vv~a~G~  218 (275)
                      .++.+.+.....++..+++.  +. +.+.               .|  ..++||+||.|.||
T Consensus       164 ~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         164 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            45788888888888765432  21 2210               12  26899999999996

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.39  E-value=0.16  Score=36.39  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             HHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchh--hc--c---cccccccCCCCceEeCC
Q 023957          172 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDW--LK--D---TILKDSLDTHGMLMVDE  244 (275)
Q Consensus       172 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~--~~--~---~~~~~~~~~~g~i~v~~  244 (275)
                      ..++..+++++.+..... .    .. ....++..+.+|.+++|+|.+|....  ..  .   ..+.+. .++|++.||+
T Consensus       104 ~~~~~~~v~~i~G~~~~~-~----~~-~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~-~~~g~i~vd~  176 (220)
T d1lvla1         104 ALLKKHGVKVVHGWAKVL-D----GK-QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLK-MNGAAIAIDE  176 (220)
T ss_dssp             HHHHHTTCEEECSCEEEE-E----TT-EEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCC-EETTEECCCT
T ss_pred             hhhccCceEEEEeeeccc-C----cc-cccccceeEeeceeeEcCCCCcccccccccccCCcceeeehh-hcCCcccccc
Confidence            334556677665543211 1    11 12234568999999999998875311  11  1   111112 2368999999


Q ss_pred             CccccCCCCeEEeccccCCCCCCCC
Q 023957          245 NLRVKGQKNIFAIGDITDIRVSASM  269 (275)
Q Consensus       245 ~~~~~~~~~v~a~Gd~~~~~~~~~~  269 (275)
                      ++|| +.|+|||+|||+..|.+++.
T Consensus       177 ~~~T-~~~~I~A~GDv~~~~~l~~~  200 (220)
T d1lvla1         177 RCQT-SMHNVWAIGDVAGEPMLAHR  200 (220)
T ss_dssp             TCBC-SSTTEEECGGGGCSSCCHHH
T ss_pred             hhhc-CCCCEEEEEEeCCcccchhh
Confidence            9999 99999999999998876543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.30  E-value=0.08  Score=38.32  Aligned_cols=28  Identities=21%  Similarity=0.108  Sum_probs=20.7

Q ss_pred             eeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957          186 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  218 (275)
Q Consensus       186 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  218 (275)
                      .|.++..+    .|++.|| ++++|.||+||||
T Consensus       208 ~I~~~~~~----gV~~~dg-~~~~D~VV~ATGf  235 (235)
T d1w4xa2         208 PIETITPR----GVRTSER-EYELDSLVLATGF  235 (235)
T ss_dssp             CEEEECSS----EEEESSC-EEECSEEEECCCC
T ss_pred             CCeEEeCC----eEEECCC-EEcCCEEEeCCCC
Confidence            45555532    3777787 4899999999997

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.06  E-value=0.13  Score=39.78  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++.|+|+|| |..|-..+..|. +|++|+++-|+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4578999997 999999999986 7999999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.02  E-value=0.12  Score=35.72  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ....|+|+|+|+.|+.++..++ .|. .|++.++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            3467999999999999998887 564 677777765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.85  E-value=0.15  Score=35.17  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~   46 (275)
                      ...|+|+|+|..|++++..++ .| .+|++++.++.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            357999999999999999888 55 58888887664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.82  E-value=0.06  Score=36.63  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHhh
Q 023957           11 GKNKRVVVIGG-GVAGSLVAKSLQ   33 (275)
Q Consensus        11 ~~~~~vvIIGg-G~aGl~aA~~L~   33 (275)
                      +.+.+|.|||| |..|.++|+.|.
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~   25 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIA   25 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH
Confidence            34569999997 999999999997

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.80  E-value=2.5  Score=32.86  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE--Ec------CC---------CcEEeecEEEEcCCCCCCc--hhhc
Q 023957          166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LT------ST---------GDTINADCHFLCTGKPVGS--DWLK  226 (275)
Q Consensus       166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v--~~------~~---------g~~~~~d~vv~a~G~~~~~--~~~~  226 (275)
                      ....+.+..+..|+++..+..+.++..+++....  ..      .+         +....++..+++.|.....  .++.
T Consensus       143 ~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~  222 (380)
T d2gmha1         143 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYK  222 (380)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHh
Confidence            4556677788899999999999888765543221  11      11         1245678888998876422  2222


Q ss_pred             ccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957          227 DTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       227 ~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      ...+.......+.+..-  -+. ..+++..+||+|++-++.
T Consensus       223 ~~~l~~~~~~~~G~~si--p~l-~~~G~lLVGDAAG~vnP~  260 (380)
T d2gmha1         223 KFDLRANCEPQGGFQSI--PKL-TFPGGLLIGCSPGFMNVP  260 (380)
T ss_dssp             HTTTTTTSCCCCGGGGC--CCC-EETTEEECTTTTCCCBTT
T ss_pred             hhhhccccccccccccc--ccc-ccCCeeEEeccccccchh
Confidence            22221111122111100  111 368999999999886654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.67  E-value=0.062  Score=36.54  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhhc----C----CcEEEEcCCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQF----S----ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~~----g----~~v~vie~~~~   46 (275)
                      .+.+|.|||| |..|.++|+.|..    +    ....++|.+..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~   45 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM   45 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc
Confidence            3469999996 9999999998862    2    24677776543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.12  Score=39.98  Aligned_cols=31  Identities=39%  Similarity=0.526  Sum_probs=27.3

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ++|+|+|| |+.|...+..|. +|++|+++++-
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            36999998 999999999996 79999999863

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.16  Score=37.34  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            368999999999999999998 486 7999996653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.97  E-value=0.19  Score=34.47  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=27.2

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      ..+|+|+|+ |+.|+.++..++ .| .+|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            457999995 999999998887 56 5888898765

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.18  Score=38.93  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++|+|.|| |+.|-..+.+|. +|++|+++|+..
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            368999997 999999999886 799999998643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.17  Score=34.83  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ....|+|+|| |+.|+.+...++ .|.+|+.+...+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            3457999996 999999988777 699998887644

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.63  E-value=0.3  Score=29.52  Aligned_cols=33  Identities=18%  Similarity=0.087  Sum_probs=27.0

Q ss_pred             CCeEEEEcCChHHHHHH-HHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVA-KSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA-~~L~-~g~~v~vie~~~   45 (275)
                      +++|-+||-|=+|+++. ..|+ +|++|+--|...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            35799999999999874 5555 799999999765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.48  E-value=0.25  Score=35.74  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHhhc---------------------C-CcEEEEcCCCCcc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQF---------------------S-ADVTLIDPKEYFE   48 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~~---------------------g-~~v~vie~~~~~~   48 (275)
                      ..++|+|||+|-.++=||..|.+                     | .+|+++.|+....
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~   96 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ   96 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh
Confidence            35899999999999999987753                     4 4799999887543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.33  E-value=0.15  Score=35.21  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ....|+|.|| |+.|+.+...++ .|.+|+.+++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            3457899896 999999988887 699999888654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.20  E-value=0.29  Score=34.06  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.|.|||.|..|-..|..|+ -|.+|..+++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            3578999999999999999998 5999999998653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.20  E-value=0.21  Score=38.61  Aligned_cols=34  Identities=32%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|.|| |+.|..++..|. +|++|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            479999994 899999999987 7999999998653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.21  Score=38.04  Aligned_cols=31  Identities=35%  Similarity=0.617  Sum_probs=27.5

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      ++|+|.|| |+.|...+.+|. +|++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            68999998 999999999986 79999999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.89  E-value=0.24  Score=34.31  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhhc----CC----cEEEEcCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQF----SA----DVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~~----g~----~v~vie~~~   45 (275)
                      ..-+|.|+|| |..|.++|+.|+.    |.    .+.++|...
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            3458999996 9999999999873    22    566666544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.53  E-value=0.32  Score=34.45  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..++|+|-|-|-.|..+|..|. .|.+|++.|.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            4589999999999999999998 799999998754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.40  E-value=0.25  Score=34.05  Aligned_cols=33  Identities=30%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             CeEEEEcCChHHHHHHHH--h-h-c---CCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKS--L-Q-F---SADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~--L-~-~---g~~v~vie~~~~   46 (275)
                      .+|.|||||-.|.+.++.  | . .   +.+++++|.++.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            589999999999776542  2 2 2   458999998764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=88.05  E-value=0.43  Score=36.87  Aligned_cols=86  Identities=20%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             hCCCEEEcCceeeeecCCCC--Cc-eEE---cCCCc--EEeecEEEEcCCCCCCchhhcccccccc--------------
Q 023957          176 SKKVDVKLGERVNLDSVSEG--SD-TYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTILKDS--------------  233 (275)
Q Consensus       176 ~~gv~i~~~~~v~~i~~~~~--~~-~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~--------------  233 (275)
                      ..|++++.++.|.+|..++.  .+ .|+   ..+|+  .+.++.||+|.|..-.+.++..++..-.              
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~  309 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS  309 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence            45789999999999976543  22 344   34555  6789999999997543444332221100              


Q ss_pred             -------cCCC-CceEeCCCccccCCCCeEEecccc
Q 023957          234 -------LDTH-GMLMVDENLRVKGQKNIFAIGDIT  261 (275)
Q Consensus       234 -------~~~~-g~i~v~~~~~~~~~~~v~a~Gd~~  261 (275)
                             .+.. ..=.||+++++-+.+|+|+++...
T Consensus       310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv  345 (379)
T d2f5va1         310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGN  345 (379)
T ss_dssp             TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGG
T ss_pred             cceeecccCCCCCCccCCCCCcccccCCEEEeCCcc
Confidence                   0000 012588888887789999865543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.90  E-value=0.31  Score=33.42  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=26.0

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~   45 (275)
                      ...|+|+|+|..|+.++..++ .|. .|++.+.++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            457999999999999998887 676 566666544

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.86  E-value=2.2  Score=29.89  Aligned_cols=92  Identities=21%  Similarity=0.260  Sum_probs=63.5

Q ss_pred             HHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc--------hhhcccccccccCCCCceEe
Q 023957          171 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS--------DWLKDTILKDSLDTHGMLMV  242 (275)
Q Consensus       171 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~--------~~~~~~~~~~~~~~~g~i~v  242 (275)
                      ...++..|++++.+......   .....+. .....+.++.+++++|..|..        +.+.....++.++++|+|.|
T Consensus        98 ~~~~~~~gV~~i~G~a~~~~---~~~~~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~~G~I~v  173 (221)
T d3grsa1          98 QNNLTKSHIEIIRGHAAFTS---DPKPTIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIV  173 (221)
T ss_dssp             HHHHHHTTCEEEESCCEECS---CSSCEEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCTTSCBCC
T ss_pred             hhhhccCceEEEEEeeeecc---ccceeee-eeccccccceeEEecCccccCCCccccCCCCcCchhcCcEECCCccEEe
Confidence            34567788998876532211   1122222 233578999999999965543        22223334568899999999


Q ss_pred             CCCccccCCCCeEEeccccCCCCCC
Q 023957          243 DENLRVKGQKNIFAIGDITDIRVSA  267 (275)
Q Consensus       243 ~~~~~~~~~~~v~a~Gd~~~~~~~~  267 (275)
                      |+++|| |.|+|||+|||++.+...
T Consensus       174 d~~~~T-~~~gvyA~GDv~~~~~l~  197 (221)
T d3grsa1         174 DEFQNT-NVKGIYAVGDVCGKALLT  197 (221)
T ss_dssp             CTTCBC-SSTTEEECGGGGTSSCCH
T ss_pred             CCCccc-cCCcEEEEEEccCCcCcH
Confidence            999999 999999999999876544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.17  Score=36.19  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccccccccCCc----------------------c-ccc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPS----------------------F-GKR   65 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~~~~~~~~~----------------------~-~~~   65 (275)
                      .+++++|||||++|+.+|..|+ .  ..+|++|++++.+.+.-..++......                      + ...
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            3578999999999999999997 3  457999999877654322221110000                      0 000


Q ss_pred             cccc--cccc--ccccEEEE-eeeeEee--cCeEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957           66 SVIN--HTDY--LVNGRIVA-SPAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (275)
Q Consensus        66 ~~~~--~~~~--~~~~~~~~-~~~~~~~--~~~v~~~~~~~~~~~~lilatG~~~~~~~  117 (275)
                      ....  ....  ..++++.. .++..++  .+++.+++|+++.||.+|+|+|+.|..+.
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~  141 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVE  141 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCT
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhh
Confidence            0000  0001  12455544 3455665  34899999999999999999998755443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.66  E-value=0.22  Score=35.80  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=25.0

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEc
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLID   42 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie   42 (275)
                      ++.+|+|.|| |..|..++..|. +|++|.++.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            3578999995 999999999886 687765554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.41  E-value=0.4  Score=33.84  Aligned_cols=34  Identities=32%  Similarity=0.496  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.|.|||.|-.|..+|..|+ -|.+|+.+|+...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            478999999999999999998 5999999998543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.77  E-value=0.35  Score=36.64  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=29.0

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++|+|.|| |+.|-.++.+|. +|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47999998 999999999886 7999999998654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.43  E-value=0.32  Score=34.43  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=25.2

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCC--cEEEEcCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSA--DVTLIDPK   44 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~--~v~vie~~   44 (275)
                      +++|+|.|| |..|-.++.+|. +|+  +|+.+-|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            479999999 999999999886 676  45555443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.96  E-value=0.5  Score=33.84  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCc
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYF   47 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~~   47 (275)
                      ...+|++.|+|-||+..|..|. .+ .++.++|+...+
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            3478999999999999998886 34 469999987543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.38  Score=38.42  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~   46 (275)
                      ..+|+|||+|-.|..+|..|. .|. +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            358999999999999999998 576 7999997653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.79  E-value=0.56  Score=33.00  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.|.|||-|-.|...|..|+ -|.+|..+++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            578999999999999999998 5999999987543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.56  E-value=0.35  Score=37.91  Aligned_cols=29  Identities=41%  Similarity=0.626  Sum_probs=26.3

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEc
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLID   42 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie   42 (275)
                      ++|+|.|| |+.|..++.+|. +|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999997 999999999986 799999997

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.39  E-value=0.28  Score=35.29  Aligned_cols=83  Identities=8%  Similarity=-0.067  Sum_probs=55.3

Q ss_pred             CCcchhhHHHHHhhh-----CCCCEEEEEeCCCcccC----------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957          129 GGPTGVELAGEIAVD-----FPEKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  193 (275)
Q Consensus       129 ~g~~~~~~a~~l~~~-----~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  193 (275)
                      +|++|+.+|..|...     ..+.+|+++++.+.+..          .....+.+.....+...|++++.++.+..... 
T Consensus        10 aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~-   88 (239)
T d1lqta2          10 SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQ-   88 (239)
T ss_dssp             CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCCBTTTBC-
T ss_pred             cCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEEeccccc-
Confidence            688899999888753     24468999999876432          11234555666777888999999987632110 


Q ss_pred             CCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957          194 EGSDTYLTSTGDTINADCHFLCTGKPV  220 (275)
Q Consensus       194 ~~~~~v~~~~g~~~~~d~vv~a~G~~~  220 (275)
                             .++ -...+|.+++++|..+
T Consensus        89 -------~~~-~~~~~~~v~~atGa~~  107 (239)
T d1lqta2          89 -------PGE-LSERYDAVIYAVGAQS  107 (239)
T ss_dssp             -------HHH-HHHHSSEEEECCCCCE
T ss_pred             -------hhh-hhccccceeeecCCCc
Confidence                   111 1235899999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.35  E-value=0.49  Score=35.03  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             CCeEEEEcC-C--hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-G--VAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G--~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.++|.|| |  =.|.++|..|. .|++|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999996 4  37888888887 7999999998754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.25  E-value=0.55  Score=34.00  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=26.9

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .+.|+|.|| |-.|.++|..|. +|++|.++++.+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999998 457888888887 799999998755

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.11  E-value=0.59  Score=33.36  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             CCeEEEEcCChHHHHHHHHhh---------------------cCC-cEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ---------------------FSA-DVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~---------------------~g~-~v~vie~~~~~   47 (275)
                      .++|+|||+|-.++=+|..|.                     .|. +|+++-|+...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            579999999999999997553                     243 68888887653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.94  E-value=0.42  Score=35.22  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             CCCeEEEEcC-Ch--HHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGG-GV--AGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~--aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      ..+.++|.|| |-  .|.++|..|+ .|++|++.+++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            3578999995 55  6777888887 799999988765

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.47  Score=36.33  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             CeE-EEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRV-VVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~v-vIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ++| +|.|| |+.|-.++.+|. +|++|+.+++...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            468 78887 799999999886 7999999998653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.82  E-value=0.73  Score=32.24  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.|.|||.|-.|-..|..|+ -|.+|..+++...
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCccc
Confidence            478999999999999999998 5999999997543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.64  E-value=0.54  Score=35.82  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.++|.|| |+.|..++.+|. +|++|+.+++...
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~   36 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   36 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            56888887 999999999986 7999999998653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.62  E-value=0.39  Score=35.45  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~-aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+.++|.||+- .|.++|..|. .|++|++.+++..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456778888764 6778888887 7999999998764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.62  E-value=0.58  Score=35.79  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      .++.|+|.|| |+.|-..+.+|. .|++|+.+|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            3468999987 999999999996 799999999744

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=84.27  E-value=1.2  Score=30.65  Aligned_cols=38  Identities=18%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcC-ChHHHHHHHHhh--cCCcEEEEcCCCCcc
Q 023957           11 GKNKRVVVIGG-GVAGSLVAKSLQ--FSADVTLIDPKEYFE   48 (275)
Q Consensus        11 ~~~~~vvIIGg-G~aGl~aA~~L~--~g~~v~vie~~~~~~   48 (275)
                      .++.+|.|||| |.+|......|.  +..+++.+-.+...|
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG   43 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAG   43 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTT
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCC
Confidence            34578999998 999999999997  477877776555555

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.03  E-value=0.51  Score=32.01  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=23.9

Q ss_pred             CeEEEEcCChHHHHHHHHh--h-----cCCcEEEEcCCCC
Q 023957           14 KRVVVIGGGVAGSLVAKSL--Q-----FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~L--~-----~g~~v~vie~~~~   46 (275)
                      ++|.|||||-.|.+.++.+  +     +..++.++|.++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~   40 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEE   40 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcH
Confidence            3799999998887777442  2     1457999997653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.59  Score=36.12  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=26.6

Q ss_pred             CeEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           14 KRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.|+|.| +|+.|..++.+|. +|++|+.+++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4677999 6999999999986 799999999854

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=83.80  E-value=0.3  Score=37.95  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=38.6

Q ss_pred             HHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEc----CCC-----cEEeecEEEEcCCCCCCchhh
Q 023957          169 KTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT----STG-----DTINADCHFLCTGKPVGSDWL  225 (275)
Q Consensus       169 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~----~~g-----~~~~~d~vv~a~G~~~~~~~~  225 (275)
                      .+....+..+++|++++.|++|..+++. ..|..    .++     +++.||.||+|+|....+.+|
T Consensus       228 ~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         228 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            3444455556999999999999876553 22322    222     258899999999976545555

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.99  E-value=0.97  Score=31.40  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ....|.|||-|..|-..|..|. -|.+|..+++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            3578999999999999999998 5999999997553

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.91  E-value=0.73  Score=32.83  Aligned_cols=13  Identities=15%  Similarity=0.107  Sum_probs=11.7

Q ss_pred             EEeecEEEEcCCC
Q 023957          206 TINADCHFLCTGK  218 (275)
Q Consensus       206 ~~~~d~vv~a~G~  218 (275)
                      .++||+||.|.||
T Consensus       204 ~i~~dlvi~AIGy  216 (216)
T d1lqta1         204 ELPAQLVVRSVGY  216 (216)
T ss_dssp             EEECSEEEECSCE
T ss_pred             EEECCEEEECCCC
Confidence            6899999999996

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.75  E-value=0.79  Score=33.30  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=26.4

Q ss_pred             CCCeEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        12 ~~~~vvIIGgG-~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      +.+.++|.||+ =.|.++|..|. .|++|++.+++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34667777864 47888888887 799999999865

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.53  E-value=0.45  Score=32.52  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCChHHHHHHH--Hhh--cC---CcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAK--SLQ--FS---ADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~--~L~--~g---~~v~vie~~~~   46 (275)
                      +.++|+|||||-.|...+.  .|+  ..   -+++++|-++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~   43 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE   43 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChh
Confidence            4579999999987755442  222  23   47999997653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.27  E-value=0.62  Score=35.31  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             eEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCC
Q 023957           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (275)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~   44 (275)
                      +|+|.|| |+.|-..+..|. +|++|+.+++-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            6888887 999999999886 89999999853

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.94  E-value=0.72  Score=34.69  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .++|+|.|| |+.|-.++.+|. +|+.+++++....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            358999998 999999999997 6999888876654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=81.94  E-value=1.1  Score=31.05  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ....|.|||.|-.|...|..|+ -|.+|..+++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            3579999999999999999998 5999999998653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.90  E-value=0.68  Score=33.58  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=27.1

Q ss_pred             CCCeEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG-~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+.++|.||+ -.|.++|..|. .|++|++.+++..
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45677888775 37777888886 7999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.78  E-value=0.86  Score=34.07  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=25.2

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.++|.|| |-.|.++|..|. .|++|++.+++..
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            56666664 666778888887 7999999998753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=81.53  E-value=0.43  Score=37.46  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=37.7

Q ss_pred             HHHhCCCEEEcCceeeeecCCCC-----CceEE--cCCCc--EEeecE-EEEcCCCCCCchhhcccc
Q 023957          173 WLISKKVDVKLGERVNLDSVSEG-----SDTYL--TSTGD--TINADC-HFLCTGKPVGSDWLKDTI  229 (275)
Q Consensus       173 ~~~~~gv~i~~~~~v~~i~~~~~-----~~~v~--~~~g~--~~~~d~-vv~a~G~~~~~~~~~~~~  229 (275)
                      .++..++++++++.|++|..+++     ...|.  ..+|+  ++.|+. ||+|+|..-.+.+|..+|
T Consensus       234 ~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SG  300 (385)
T d1cf3a1         234 NYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSG  300 (385)
T ss_dssp             GTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTT
T ss_pred             hhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcC
Confidence            34567899999999999864433     22343  34664  567776 999999765455554443

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=81.47  E-value=0.79  Score=34.95  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=26.6

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g-~~v~vie~~~   45 (275)
                      ++|+|.|| |+.|-.++.+|. +| .+|..+|+..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            37999998 999999998885 66 5899998754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.36  E-value=0.73  Score=33.70  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCC---hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGG---VAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG---~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.+.++|.||+   =.|.++|..|. .|++|++.++++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            34778999964   26899998887 7999999887654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.33  E-value=1.2  Score=30.73  Aligned_cols=35  Identities=40%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      ..+.+.|||.|..|-..|..|+ -|.+|..+++...
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            3578999999999999999998 5999999987653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=0.74  Score=33.64  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             CCeEEEEcCCh---HHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           13 NKRVVVIGGGV---AGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        13 ~~~vvIIGgG~---aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      .+.++|.||+-   .|.++|..|. .|++|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46788888753   4677888886 7999999998765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.82  E-value=0.93  Score=32.56  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (275)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~~   46 (275)
                      +.++|-|| +-.|.++|..|. .|++|++.++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45667776 556777888887 6999999998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.89  Score=34.00  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cCC-------cEEEEcCCCCc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FSA-------DVTLIDPKEYF   47 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g~-------~v~vie~~~~~   47 (275)
                      ..+|+|.|+|-||+.+|..|.     .|.       ++.++|+...+
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv   71 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL   71 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEEC
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCc
Confidence            358999999999999997764     243       69999986643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.53  E-value=0.89  Score=33.06  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             EEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957           16 VVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (275)
Q Consensus        16 vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~   45 (275)
                      |+|.|| +-.|.++|..|. .|++|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            455665 446777778887 799999999864

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=80.39  E-value=0.62  Score=34.97  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             CCeEEEEcCChHHHHHHHHhh-----cC-------CcEEEEcCCCCcc
Q 023957           13 NKRVVVIGGGVAGSLVAKSLQ-----FS-------ADVTLIDPKEYFE   48 (275)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~L~-----~g-------~~v~vie~~~~~~   48 (275)
                      ..+|+|.|+|.||+.+|..|.     .|       .++.++|+...+.
T Consensus        25 d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~   72 (298)
T d1gq2a1          25 DHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIV   72 (298)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECB
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCccc
Confidence            358999999999999997663     23       4799999876543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.07  E-value=1  Score=32.22  Aligned_cols=33  Identities=33%  Similarity=0.591  Sum_probs=27.8

Q ss_pred             CCeEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957           13 NKRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (275)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~L~-~g--~~v~vie~~~   45 (275)
                      +++|+|.|| |..|-..+.+|. +|  .+|+++.|++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            368999998 999999998885 56  3899999865