Citrus Sinensis ID: 023981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Secondary Structure (PSIPRED)
cccccccccccHHHHHHccccccccccEEEEEEEcccccEEEEEEEEcccEEEEEEEEEEEEccEEEEEEEcccccEEEEEEEcccccccEEEEEEEEccccccEEEEEEEcccccccEEEEEccccEEEEEEEEEEcEEEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccccccEEEEEEEEccccEEEEEEEcEccccEEEEEEEEEEcccEEEEEEEcccccEEEEEEEcccccccEEEEccccccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccccccEcEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mgkgpglytdIGKKARDLLYKDyqsdhkftittysptgvaitssgtkkGELFLADVNTQlknknittdlkvdtasnlfttitvdepapglktilsfkvpdqrsgkVELQYLHDyagistsvgltanpivnFSAVIGTNVLslgtdlsfdsksgnftkcnaglsfnnADLIASLnlnnkgdslAASYYHFVNPLTAVGAEVIhsfsttdntitvgtqhildpLTTLKARVNNAGIASALIqhewrpkslftisgeVDTKAIEKSAKFGLALALKP
Flexible Loop (DISEMBL)
mgkgpglytdiGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTqlknknittdlkvdtaSNLFTtitvdepapglKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASaliqhewrpkSLFTISGEVDTKAIEKSAKFGLALALKP
Low Complexity Region (SEG)
MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Disordered region (IsUnstruct)
*******YTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGL******
Disordered Region (DISOPRED)
***GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Disordered Region (DISEMBL)
MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Disordered Region (DISPRO)
***GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
P42055	276	Mitochondrial outer membr	N/A	no	1.0	0.992	0.833	1e-135
P42056	276	Mitochondrial outer membr	N/A	no	1.0	0.992	0.789	1e-127
P42054	276	Outer plastidial membrane	N/A	no	1.0	0.992	0.782	1e-121
Q9SRH5	276	Mitochondrial outer membr	yes	no	1.0	0.992	0.760	1e-117
Q9SMX3	274	Mitochondrial outer membr	no	no	1.0	1.0	0.700	1e-111
Q6K548	274	Mitochondrial outer membr	yes	no	0.989	0.989	0.683	1e-109
P46274	275	Mitochondrial outer membr	N/A	no	0.996	0.992	0.673	1e-104
Q7F4F8	275	Mitochondrial outer membr	no	no	0.985	0.981	0.644	2e-98
P42057	277	Outer plastidial membrane	N/A	no	0.978	0.967	0.612	2e-92
Q6L5I5	280	Mitochondrial outer membr	no	no	0.978	0.957	0.617	2e-90

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  479 bits (1233), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/276 (83%), Positives = 259/276 (93%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLYT+IGKKARDLLYKDYQSDHKF+ITTYSPTGV ITSSG+KKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TS
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L ASYYH V+PL  TAVGAEV HSFST +N ITVGTQH LDPLT++KAR+NN G ASAL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           +QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.
Solanum tuberosum (taxid: 4113)

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/276 (78%), Positives = 254/276 (92%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLY+DIGKKARDLLY+DY SDHKFT+TTYS TGVAIT+SG KKGELFLADV+TQL
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLTA+P+VNFS V G N ++LGTDLSFD+ +GNFTKCNAGLSF+++DLIASL LN+KGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +++ASYYH V P+  TAVGAE+ HSFS+ +NT+T+GTQH+LDPLTT+KARVN+ G ASAL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/276 (78%), Positives = 238/276 (86%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLYTDIGKKARDLLYKDY SD KFTI+TYSPTGVAITSSGTKKGELFL DVNTQL
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+S
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGL ANPIVNFS+VIGTN L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
            L+ASYYH +NPL  TAVG ++ H FST +NT T+GTQH LDPLTT+K RV N+G ASAL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/276 (76%), Positives = 236/276 (85%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLYT+IGKKARDLLYKD+ SD KF+ITT+SP GVAITS+GTKKG+L L DV  Q 
Sbjct: 1   MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS
Sbjct: 61  RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD
Sbjct: 121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
            L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KARVN+AGIASAL
Sbjct: 181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct: 241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/274 (70%), Positives = 228/274 (83%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLYT+IGKKARDLLY+DYQ D KF++TTYS TGVAIT++GT KG LFL DV TQ+
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTS
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQ 240
            L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQ
Sbjct: 181 KLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQ 240

Query: 241 HEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           HEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct: 241 HEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/272 (68%), Positives = 229/272 (84%), Gaps = 1/272 (0%)

Query: 4   GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
           GPGLY +IGKKARDLLY+DYQ+DHKFT+TTY+  GVAIT++ TKK +L   ++ +Q+KNK
Sbjct: 3   GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 62

Query: 64  NITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGL 123
           NIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GL
Sbjct: 63  NITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGL 122

Query: 124 TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLA 183
           TA+P+VN S+V GT  L++G D+S D+ +GN TK NAGLSF+N DLIASLNLNNKGDSL 
Sbjct: 123 TASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLT 182

Query: 184 ASYYHFVN-PLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHE 242
           ASYYH VN   TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR NN+G ASAL+QHE
Sbjct: 183 ASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHE 242

Query: 243 WRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           WRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct: 243 WRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/276 (67%), Positives = 228/276 (82%), Gaps = 3/276 (1%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MG GPGLY+ IGKKA+DLLY+DYQ+DHKFT+TTY+  G AIT++ TKK +L + ++ +Q+
Sbjct: 1   MG-GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQI 59

Query: 61  KNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGIST 119
           KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ 
Sbjct: 60  KNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINA 119

Query: 120 SVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKG 179
           S+GLTANP+VN S   GT+ L++G D+S D+ + NF K NA LS+ N DLIASLNLNNKG
Sbjct: 120 SIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKG 179

Query: 180 DSLAASYYHFVNPL-TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           DSL ASYYH V    TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR+NN+G ASAL
Sbjct: 180 DSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASAL 239

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct: 240 IQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Triticum aestivum (taxid: 4565)

>sp|Q7F4F8|VDAC3_ORYSJ Mitochondrial outer membrane protein porin 3 OS=Oryza sativa subsp. japonica GN=VDAC3 PE=2 SV=1

 Score =  358 bits (920), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 216/273 (79%), Gaps = 3/273 (1%)

Query: 4   GPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
            PGLYTDIGKK RDLLY+DY + HKFT+TT +P GV IT++GT+K E    ++ TQLKNK
Sbjct: 2   APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61

Query: 64  NITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVG 122
            +T D+K ++ S+L TT+TVDE   PGLK+ILS  VPDQRSGK+ELQYLH+YAGI+ SVG
Sbjct: 62  KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121

Query: 123 LTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSL 182
           L +NP+VN S V G+  LS+G D++FD+ + NFTK NA LS  N+DLIASL+LNN GD+L
Sbjct: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181

Query: 183 AASYYHFV--NPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQ 240
            ASYYH V  +  TAVGAE+ HSFS  ++T+  G+QH LDP TT+KAR NN G+ASAL+Q
Sbjct: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241

Query: 241 HEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273
           HEWRPKSL TISGEVDTKAIEKS K GL+L LK
Sbjct: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42057|VDAC_MAIZE Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1

 Score =  338 bits (868), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/271 (61%), Positives = 209/271 (77%), Gaps = 3/271 (1%)

Query: 6   GLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNI 65
           GLYTDIGKK RDLLYKDY +  KF +TT SP GVAIT++GT+K E    +++TQ+KNK +
Sbjct: 6   GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKL 65

Query: 66  TTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT 124
           T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL 
Sbjct: 66  TVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLN 125

Query: 125 ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAA 184
           +NP+VN S   G+  LS+G D+SFD+ + +FTK NA LS  + DLIASL+LNN GD+L A
Sbjct: 126 SNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVA 185

Query: 185 SYYHFV--NPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHE 242
           SYYH V  +  TAVGAE+ HS S  ++T+  G+QH LDP TT+K R NN G+ASAL+QHE
Sbjct: 186 SYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHE 245

Query: 243 WRPKSLFTISGEVDTKAIEKSAKFGLALALK 273
           WRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct: 246 WRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Zea mays (taxid: 4577)

>sp|Q6L5I5|VDAC2_ORYSJ Mitochondrial outer membrane protein porin 2 OS=Oryza sativa subsp. japonica GN=VDAC2 PE=2 SV=1

 Score =  332 bits (851), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/269 (61%), Positives = 208/269 (77%), Gaps = 1/269 (0%)

Query: 7   LYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNIT 66
           LY+DIGKKARDLLY+DY +D KFT+TTY+  G AIT +GTKK E   +++ +Q+KN N++
Sbjct: 12  LYSDIGKKARDLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQSQVKNNNVS 71

Query: 67  TDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTA 125
            D+K  + S L TT TV D   PGLK ILS   P Q+S K E+QYLH +AG++  VGL A
Sbjct: 72  VDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLNA 131

Query: 126 NPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAAS 185
           NP+V+FS V GT   ++GTD++FD+ +G+FTK NAGLS    DL A+L LNNKGDSLAAS
Sbjct: 132 NPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAAS 191

Query: 186 YYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRP 245
           YYH V+  +AVGAE+ HSFS+ +NT+T GTQH LD LTT+KAR NN G+ASALIQHE+RP
Sbjct: 192 YYHKVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFRP 251

Query: 246 KSLFTISGEVDTKAIEKSAKFGLALALKP 274
           KSL TIS EVDTKAI+KS+K GL+L LKP
Sbjct: 252 KSLVTISTEVDTKAIDKSSKVGLSLVLKP 280

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
449459452	276	PREDICTED: mitochondrial outer membrane	1.0	0.992	0.862	1e-135
161788876	276	voltage-dependent anion channel [Nicotia	1.0	0.992	0.847	1e-133
1172555	276	RecName: Full=Mitochondrial outer membra	1.0	0.992	0.833	1e-133
83283993	276	34 kDa outer mitochondrial membrane prot	1.0	0.992	0.836	1e-131
161788872	276	voltage-dependent anion channel [Nicotia	1.0	0.992	0.822	1e-130
224141349	274	porin/voltage-dependent anion-selective	1.0	1.0	0.824	1e-130
225452700	276	PREDICTED: mitochondrial outer membrane	1.0	0.992	0.822	1e-130
1724100	276	porin [Mesembryanthemum crystallinum]	1.0	0.992	0.829	1e-129
225424908	276	PREDICTED: mitochondrial outer membrane	1.0	0.992	0.815	1e-129
67848430	276	mitochrondrial voltage-dependent anion-s	1.0	0.992	0.833	1e-129

>gi|449459452|ref|XP_004147460.1| PREDICTED: mitochondrial outer membrane protein porin of 34 kDa-like [Cucumis sativus] gi|449523227|ref|XP_004168625.1| PREDICTED: mitochondrial outer membrane protein porin of 34 kDa-like [Cucumis sativus]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/276 (86%), Positives = 258/276 (93%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLY+DIGK+ARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYSDIGKRARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT+SNL TTITVDEPAPGLK I SFKVPDQRSGKVELQYLHDYAGISTS
Sbjct: 61  KNKNITTDIKVDTSSNLVTTITVDEPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLTANPIVNFS V+G+N+L+LGTDLSFD+K+GNFTK N GLSF NADLIASL LN+KGD
Sbjct: 121 IGLTANPIVNFSGVVGSNLLALGTDLSFDTKTGNFTKVNTGLSFANADLIASLTLNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L+ASYYH VNPL  TAVGAEV HSFS+ +NTITVGTQH LDPLT++KARVNN G ASAL
Sbjct: 181 TLSASYYHTVNPLTSTAVGAEVAHSFSSNENTITVGTQHALDPLTSVKARVNNFGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKS FT+SGEVDTKAIEKSAK GLALALKP
Sbjct: 241 IQHEWRPKSFFTVSGEVDTKAIEKSAKVGLALALKP 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161788876|dbj|BAF95072.1| voltage-dependent anion channel [Nicotiana tabacum]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/276 (84%), Positives = 260/276 (94%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLYT+IGKK RDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYTEIGKKTRDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SNLFTTITVD+ APGLKTILSF+VPDQRSGK+E+QYLH+YAGISTS
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVDDAAPGLKTILSFRVPDQRSGKLEVQYLHEYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTN+L+LGTD+SFDSK+G+FTKCNAGLSF NADL+ASLNLN+KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNILALGTDVSFDSKTGDFTKCNAGLSFTNADLVASLNLNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L+ASYYH V+P   TAVGAEV H FST +NTITVGTQH LDPLT++KARVNN G ASAL
Sbjct: 181 NLSASYYHSVSPFTSTAVGAEVNHCFSTNENTITVGTQHRLDPLTSVKARVNNFGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           +QHEWRPKSLFTISGEVDTK+++K AKFGLALALKP
Sbjct: 241 LQHEWRPKSLFTISGEVDTKSVDKGAKFGLALALKP 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1172555|sp|P42055.2|VDAC1_SOLTU RecName: Full=Mitochondrial outer membrane protein porin of 34 kDa; AltName: Full=POM 34; AltName: Full=Voltage-dependent anion-selective channel protein; Short=VDAC gi|516166|emb|CAA56599.1| 34 kDA porin [Solanum tuberosum]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/276 (83%), Positives = 259/276 (93%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLYT+IGKKARDLLYKDYQSDHKF+ITTYSPTGV ITSSG+KKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TS
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L ASYYH V+PL  TAVGAEV HSFST +N ITVGTQH LDPLT++KAR+NN G ASAL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           +QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83283993|gb|ABC01904.1| 34 kDa outer mitochondrial membrane protein porin-like protein [Solanum tuberosum]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/276 (83%), Positives = 251/276 (90%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLY+DIGKK RDLLY+DYQ+DHKFTITTYSPTGVAITSSG KKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYSDIGKKTRDLLYRDYQTDHKFTITTYSPTGVAITSSGLKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SNL  T+TVDE APGLKTI S ++PDQ S K+ELQYLHDYAGI TS
Sbjct: 61  KNKNITTDIKVDTNSNLLATVTVDEAAPGLKTIFSCRIPDQSSAKMELQYLHDYAGICTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTNVL+LGTD+SFD+K+G  TKCNAGLSF NADLI SLNLNNKGD
Sbjct: 121 VGLTANPIVNFSGVLGTNVLALGTDVSFDTKAGAITKCNAGLSFTNADLITSLNLNNKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           SL+ASYYH V PL  TAVGAEV HSFST +NTITVGTQH LDPLTT+KARVNN G A+AL
Sbjct: 181 SLSASYYHIVTPLTSTAVGAEVTHSFSTNENTITVGTQHQLDPLTTVKARVNNFGTATAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSLFTISGEVDTKA++KSAKFGLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTKAVDKSAKFGLALALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161788872|dbj|BAF95070.1| voltage-dependent anion channel [Nicotiana tabacum]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/276 (82%), Positives = 253/276 (91%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLY+DIGK+ARDLLY+DYQ+DHKFTITTYSPTGVAITSSG KKG+LFLADVNTQL
Sbjct: 1   MGKGPGLYSDIGKRARDLLYRDYQTDHKFTITTYSPTGVAITSSGLKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKN+TTD+KVDT SNL  T+TVDE APGLKTILSF++PDQ S K+E+QYLHDYAGISTS
Sbjct: 61  KNKNVTTDIKVDTNSNLLATVTVDEAAPGLKTILSFRIPDQSSAKLEVQYLHDYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLTANPIVNFS V+GTN+LSLGTDLSFD+K G  TKCNAGLSF N DLIASLNLN+KGD
Sbjct: 121 LGLTANPIVNFSGVVGTNLLSLGTDLSFDTKVGAITKCNAGLSFTNTDLIASLNLNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L+ASYYH V+PL  TAV AEV HSF T +NTI+VGTQH LDPLTT+KARVNN G A+AL
Sbjct: 181 ALSASYYHIVSPLTMTAVSAEVTHSFCTNENTISVGTQHQLDPLTTVKARVNNLGKANAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSLFTISGEVDTKA++KSAKFGLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTKAVDKSAKFGLALALKP 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141349|ref|XP_002324035.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118484555|gb|ABK94151.1| unknown [Populus trichocarpa] gi|222867037|gb|EEF04168.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/274 (82%), Positives = 248/274 (90%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M  GPGLY++IGKKARDLLYKDYQ+DHKFT+ T SPTGV ITSSGTKKG+L  ADVNTQL
Sbjct: 1   MVNGPGLYSEIGKKARDLLYKDYQTDHKFTLNTSSPTGVTITSSGTKKGDLLAADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT+SNLFTTITVDEPAPGLKTI SFKVPDQRSGKVE+QYLHDYA +S+S
Sbjct: 61  KNKNITTDIKVDTSSNLFTTITVDEPAPGLKTIFSFKVPDQRSGKVEIQYLHDYAAVSSS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLT NPIVNFS VIGTNV SLGTDLSFD+K+G+F KCNAG+S +  DLIASL LN+KGD
Sbjct: 121 VGLTVNPIVNFSGVIGTNVASLGTDLSFDTKTGDFIKCNAGVSLSKVDLIASLTLNDKGD 180

Query: 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQ 240
           SL ASYYH VNPLTAVGAEV HSFS+ +NTITVG QH LDPLTTLKARVNNAG ASAL+Q
Sbjct: 181 SLNASYYHIVNPLTAVGAEVSHSFSSNENTITVGAQHALDPLTTLKARVNNAGKASALVQ 240

Query: 241 HEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           H+WRPKS FT+SGEVDTKAIEK+AK GLALALKP
Sbjct: 241 HQWRPKSFFTVSGEVDTKAIEKTAKVGLALALKP 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452700|ref|XP_002282471.1| PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Vitis vinifera] gi|147769857|emb|CAN61274.1| hypothetical protein VITISV_039065 [Vitis vinifera] gi|296082856|emb|CBI22157.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/276 (82%), Positives = 255/276 (92%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLYT+IGKKARDLLYKDYQSDHK TIT+ SPTGVAITSSGTKKG++F+ADVNTQL
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKLTITSCSPTGVAITSSGTKKGDIFVADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+K+DT+SNLF T+TVDEPAPGLK+I +FKVPDQRSGKVELQYLHDYAGISTS
Sbjct: 61  KNKNITTDVKIDTSSNLFVTVTVDEPAPGLKSIFNFKVPDQRSGKVELQYLHDYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLTANPIVNFS  IGTNV++LGTDLSFD+KSGNFTKCNAG+SF NADLIASL +N+KGD
Sbjct: 121 IGLTANPIVNFSGTIGTNVVALGTDLSFDTKSGNFTKCNAGVSFCNADLIASLTVNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           ++ ASY+H VN L  TAVGAEV HSFST  NT+T+G QH LDPLTT+KARVNN G ASAL
Sbjct: 181 AVNASYFHSVNLLTNTAVGAEVTHSFSTNQNTLTLGAQHKLDPLTTVKARVNNFGKASAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRP+SLFTISGEVDTKA++K+AK GLALALKP
Sbjct: 241 IQHEWRPRSLFTISGEVDTKAVDKTAKVGLALALKP 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1724100|gb|AAB38498.1| porin [Mesembryanthemum crystallinum]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/276 (82%), Positives = 249/276 (90%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLYTDIGKKARDLLY+DYQ+D KF+ITTYSPTGVAITSSGTKKG+LFLADVNTQL
Sbjct: 1   MAKGPGLYTDIGKKARDLLYRDYQTDQKFSITTYSPTGVAITSSGTKKGDLFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKN+TTD+KVDT SNL TTITVDE APGLKTILSF+VPDQRSGK+ELQYLHDYAGI TS
Sbjct: 61  KNKNVTTDIKVDTNSNLLTTITVDEAAPGLKTILSFRVPDQRSGKLELQYLHDYAGICTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTN+L+ GTD+SFDSK+GNFTKCNAGLSF NADLIASL LN+KGD
Sbjct: 121 VGLTANPIVNFSGVLGTNLLAFGTDVSFDSKTGNFTKCNAGLSFANADLIASLTLNDKGD 180

Query: 181 SLAASYYHFVNPLT--AVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L ASYYH ++PLT  AVGAEV HSFST  NTIT+G QH +DPLT LK RVNN G A+AL
Sbjct: 181 TLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLTNLKGRVNNFGKATAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSL T S EVDTKAIEKSAK GLALALKP
Sbjct: 241 IQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424908|ref|XP_002276636.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa isoform 1 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 251/276 (90%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           MGKGPGLY+DIGK ARDLLY+DYQSDHKFT+TTY+ +GVAITSSGTKKGELF+ADVNTQL
Sbjct: 1   MGKGPGLYSDIGKIARDLLYRDYQSDHKFTVTTYTSSGVAITSSGTKKGELFIADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SNLFTTITVDEPAPGLKTI SF +PDQRSGKVELQYLH+YAGISTS
Sbjct: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIPDQRSGKVELQYLHEYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           +GLTANPIVNFS V+G N LSLGTDLSFD+ +GNFTKCNAGL F+NADLIA+L LN+KGD
Sbjct: 121 IGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCNAGLGFSNADLIAALTLNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L ASYYH V+PL  TAVGAE+ H FST +NT+T+GTQH LDPLT +KAR NN+G  SAL
Sbjct: 181 TLNASYYHTVSPLTNTAVGAELSHCFSTNENTLTIGTQHALDPLTKVKARANNSGKVSAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKSLFTISGEVD +A+EKSAK GLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDARAVEKSAKIGLALALKP 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|67848430|gb|AAY82249.1| mitochrondrial voltage-dependent anion-selective channel [Phaseolus coccineus]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/276 (83%), Positives = 247/276 (89%), Gaps = 2/276 (0%)

Query: 1   MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
           M KGPGLYTDIGKKARDLL+KDY SD KFT+TTYSPTGVAITSSGT+KGELFLADVNTQL
Sbjct: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTVTTYSPTGVAITSSGTRKGELFLADVNTQL 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
           KNKNITTD+KVDT SNLFTTITV+EPAPGLK I +FKVPDQRSGKVELQYLHDYAGISTS
Sbjct: 61  KNKNITTDIKVDTDSNLFTTITVNEPAPGLKAIFNFKVPDQRSGKVELQYLHDYAGISTS 120

Query: 121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
           VGLTANPIVNFS V+GTN+L+LG DLSFD+K G  TK NAGLSF   DLIASL LN+KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNILALGADLSFDTKIGELTKSNAGLSFTKDDLIASLTLNDKGD 180

Query: 181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
           +L A+YYH VNPL  TAVGAEV H FST +NTIT+GTQH LDPLTTLKARVNN G +SAL
Sbjct: 181 ALNAAYYHVVNPLTNTAVGAEVTHRFSTNENTITLGTQHALDPLTTLKARVNNFGKSSAL 240

Query: 239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
           IQHEWRPKS FTISGEVDTKAIEKSAK GL+L LKP
Sbjct: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLSLVLKP 276

Source: Phaseolus coccineus

Species: Phaseolus coccineus

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	1.0	0.992	0.760	3.5e-107
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	1.0	1.0	0.700	1.3e-102
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	1.0	1.0	0.474	1e-68
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.799	0.969	0.340	8.4e-26
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.978	0.950	0.260	3e-21
TAIR|locus:2151749	163	AT5G37610 [Arabidopsis thalian	0.580	0.975	0.369	3.9e-21
UNIPROTKB|E1C2E3	283	VDAC3 "Uncharacterized protein	0.978	0.946	0.271	8e-21
ZFIN|ZDB-GENE-030131-845	283	vdac2 "voltage-dependent anion	0.970	0.939	0.265	4.4e-20
CGD|CAL0001151	282	POR1 [Candida albicans (taxid:	0.974	0.946	0.249	5.7e-20
UNIPROTKB|P83781	282	POR1 "Mitochondrial outer memb	0.974	0.946	0.249	5.7e-20

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 210/276 (76%), Positives = 236/276 (85%)

Query:     1 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
             M KGPGLYT+IGKKARDLLYKD+ SD KF+ITT+SP GVAITS+GTKKG+L L DV  Q 
Sbjct:     1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query:    61 KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
             + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS
Sbjct:    61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query:   121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
             +GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD
Sbjct:   121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query:   181 SLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASAL 238
              L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KARVN+AGIASAL
Sbjct:   181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query:   239 IQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
             IQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:   241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 192/274 (70%), Positives = 228/274 (83%)

Query:     1 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
             M KGPGLYT+IGKKARDLLY+DYQ D KF++TTYS TGVAIT++GT KG LFL DV TQ+
Sbjct:     1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query:    61 KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
             KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTS
Sbjct:    61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query:   121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
             VG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+
Sbjct:   121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query:   181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQ 240
              L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQ
Sbjct:   181 KLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQ 240

Query:   241 HEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
             HEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:   241 HEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 130/274 (47%), Positives = 186/274 (67%)

Query:     1 MGKGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQL 60
             MG  P  + DIGKKA+DLL KDY  DHKFT+T  S TG    ++G KK + F  D++T  
Sbjct:     1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query:    61 KNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
             K +N   DLK+D+ S++ T +T+    P  K ++SFK+PD +SGK+++QY+H +A +++S
Sbjct:    61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query:   121 VGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD 180
             +GL   P+++ SA IG+  + LG ++SFD+ S + TK NAG+ FNN  + A+L L +KG+
Sbjct:   121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query:   181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQ 240
             SL A+Y H VNP T+ GAE+I  FS  +N+ TVG+ H +D  T +K R +N+G A  ++Q
Sbjct:   181 SLRATYVHTVNPTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQ 240

Query:   241 HEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
              EWRPKS  T S E D+KA+  S K GLALALKP
Sbjct:   241 REWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 79/232 (34%), Positives = 119/232 (51%)

Query:    48 KGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVE 107
             KG    AD+    K+  +T D   D   ++ T  +V   A    T L   V    +   +
Sbjct:     3 KGPGLFADIGKYAKDL-LTRDYSTDQKFSISTN-SVSGVAL-TSTALKNGVLHAANVATQ 59

Query:   108 LQYLHDYAGISTSVGLTANPIV---NFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSF 164
              +Y + +  +          +V   N    I  N L+      +D+ S  FTK N G+S 
Sbjct:    60 YKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLT-----GYDTTSRTFTKYNVGVSV 114

Query:   165 NNADLIASLNLNNKGDSLAASYYHFVNPLT--AVGAEVIHSFSTTDNTITVGTQHILDPL 222
                D   S+ L +KGDS+ ASY ++++  T  A   EVI   ST + T+TVG  + +D L
Sbjct:   115 TKPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHL 174

Query:   223 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274
             T +KA++N+ G   AL+QHE  PKS+ TISGE+DTK ++K  + GL+L+LKP
Sbjct:   175 TNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 73/280 (26%), Positives = 132/280 (47%)

Query:     5 PGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSG---TKKGELFLA-DVNTQ 59
             P  Y+D+GK+ARD+  K Y     K  + T + +G+   ++G    + G++F + +   +
Sbjct:     3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYK 62

Query:    60 LKNKNITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQ---RSGKVELQYLHDYA 115
             +K+  +T   K +T + LFT + V D+   GLK  L      Q   ++GK ++ Y H+  
Sbjct:    63 VKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENV 122

Query:   116 GISTSVGLTAN-PIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLN 174
                + V +    P++N SAV+G      G   +FD++    T  N  L +   D +    
Sbjct:   123 KADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTA 182

Query:   175 LNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGI 234
             +N+ G   + S +   +    VG ++  +  T++    +G ++ LD   +++A+VNNA  
Sbjct:   183 VND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQ 241

Query:   235 ASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
                  Q + R     T+S  VD K       K G+ L L+
Sbjct:   242 VGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

TAIR|locus:2151749 AT5G37610 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 61/165 (36%), Positives = 87/165 (52%)

Query:   111 LHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLI 170
             L + A IST VGL ANPI++FSAV G +    G +L+ D  +   TK N  LS    D  
Sbjct:     2 LSERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTT 61

Query:   171 ASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHIL--DPLTTLKAR 228
              + +++ K     ASYY  ++  T  GAE  +  S   N+ ++G +H+   D L      
Sbjct:    62 TTFSIDKKASLFTASYYQRLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQALLS 121

Query:   229 VNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALAL 272
             V+N G    L QH W  KS FTI+GE   + +  S+ +FGLA+ L
Sbjct:   122 VSNGGSMRVLFQHHWTLKSFFTIAGE---RLLNHSSQRFGLAVEL 163

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1C2E3 VDAC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 76/280 (27%), Positives = 131/280 (46%)

Query:     5 PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGEL--FLADVNTQLK 61
             P  Y+D+GK ARD+  K Y     K  + T S +GV  T++G+   +    L ++ T+ K
Sbjct:     4 PPSYSDLGKAARDVFNKGYGFGMVKLELKTKSSSGVEFTATGSSNTDTGKALGNLETKYK 63

Query:    62 NKN--ITTDLKVDTASNLFTTITV-DEPAPGLKTIL-SFKVPD--QRSGKVELQYLHDYA 115
              K+  +T   K +T + L T +++ D+ A GLK  L +  VP+  ++SGK++  Y  DY 
Sbjct:    64 IKDYGLTFIQKWNTDNTLGTEVSMEDQLAEGLKVALDTIFVPNTGKKSGKLKTSYRRDYV 123

Query:   116 GISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLN 174
              +  ++ +  + P +   AV+G      G  ++FD+     ++ N  L +   D     N
Sbjct:   124 NLGCNIDIDLSGPTIYGWAVLGYEGWLAGYQMAFDTAKSKLSQNNFALGYKAGDFQLHTN 183

Query:   175 LNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGI 234
             +N+ G     S Y  VN        +  +  + +    +  ++ LD  T++ A+VNNA +
Sbjct:   184 VND-GTEFGGSIYQKVNNKVETSVNLAWTAGSNNTRFGIAAKYQLDEKTSIGAKVNNASL 242

Query:   235 ASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
                      RP    T+SG +D K       K GL   L+
Sbjct:   243 IGIGYTLALRPGVKLTLSGLIDGKNFSAGGHKVGLGFELE 282

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0001662 "behavioral fear response" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007612 "learning" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

ZFIN|ZDB-GENE-030131-845 vdac2 "voltage-dependent anion channel 2" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 75/282 (26%), Positives = 124/282 (43%)

Query:     5 PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGEL--FLADVNTQLK 61
             P  Y D+GK A+D+  K Y     K  + T S +GV   +SG+   +    +  + T+ K
Sbjct:     4 PPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYK 63

Query:    62 NKN--ITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKV---PD--QRSGKVELQYLHD 113
                  +T   K +T + L T I + D+ A GLK  L+F     P+  ++SGKV+  Y  +
Sbjct:    64 RSEYGLTFTEKWNTDNTLGTEINIEDQIAKGLK--LTFDTTFSPNTGKKSGKVKTAYKRE 121

Query:   114 YAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
             +  +   V    A P ++ +AV+G      G  +SFD+     T+ N  + +   D    
Sbjct:   122 FVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYKTGDFQLH 181

Query:   173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
              N+N+ G     S Y  V+        +  +  +      +  ++ LD   ++ A+VNN 
Sbjct:   182 TNVND-GSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT 240

Query:   233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
              +         RP    T+S  VD K+I     K GL L L+
Sbjct:   241 SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELE 282

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

CGD|CAL0001151 POR1 [Candida albicans (taxid:5476)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 69/277 (24%), Positives = 125/277 (45%)

Query:     5 PGLYTDIGKKARDLLYKDYQ--SDHKFTITTYSPTGVAITSSG-TKKGELFLADVNTQLK 61
             P  Y+D+ K + DL+ KD+   S     + T +P GV  T  G T K +   A V+ +  
Sbjct:     3 PAAYSDLSKASNDLINKDFYHLSTAAVDVKTVAPNGVTFTVKGKTTKDDTISASVDAKYL 62

Query:    62 NK--NITTDLKVDTASNLFTTITVDEP-APGLKTILSFKVPDQRSGKVELQYLHDYAGIS 118
             +K   +T     + A+ L T I + E   PGLK  L   V    +   +L + +  + ++
Sbjct:    63 DKATGLTLTQGWNNANALNTKIELSELLTPGLKGELDTSVVPNGARNAKLNFFYQQSAVN 122

Query:   119 TSV--GLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLN 176
               +   L   PI     V+  +  + G +L +D  S    K + G+ + N +   +    
Sbjct:   123 ARLFFDLLKGPIATADLVVAHDGFTAGAELGYDISSAKVNKYSVGVGYANLNYGLAATAT 182

Query:   177 NKGDSLAASYYHFVNPLTAVGAEVI-HSFSTTDNTITVGTQHILDPLTTLKARVNNAGIA 235
             +     +A+Y+H V+PL  VGA+    S  +++  +   T++ LD  + +KA++ ++G+ 
Sbjct:   183 SNLSVFSAAYFHKVSPLVQVGAKATWDSIKSSNVNVEFATKYALDNTSFIKAKIADSGLT 242

Query:   236 SALIQHEWRPKSLFTISGEVDT-KAIEKSAKFGLALA 271
             +     E RP     +    D  K  E   K G +L+
Sbjct:   243 ALSYTQELRPGVKLGLGASFDALKLAEPVHKLGFSLS 279

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0051027 "DNA transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P83781 POR1 "Mitochondrial outer membrane protein porin" [Candida albicans SC5314 (taxid:237561)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 69/277 (24%), Positives = 125/277 (45%)

Query:     5 PGLYTDIGKKARDLLYKDYQ--SDHKFTITTYSPTGVAITSSG-TKKGELFLADVNTQLK 61
             P  Y+D+ K + DL+ KD+   S     + T +P GV  T  G T K +   A V+ +  
Sbjct:     3 PAAYSDLSKASNDLINKDFYHLSTAAVDVKTVAPNGVTFTVKGKTTKDDTISASVDAKYL 62

Query:    62 NK--NITTDLKVDTASNLFTTITVDEP-APGLKTILSFKVPDQRSGKVELQYLHDYAGIS 118
             +K   +T     + A+ L T I + E   PGLK  L   V    +   +L + +  + ++
Sbjct:    63 DKATGLTLTQGWNNANALNTKIELSELLTPGLKGELDTSVVPNGARNAKLNFFYQQSAVN 122

Query:   119 TSV--GLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLN 176
               +   L   PI     V+  +  + G +L +D  S    K + G+ + N +   +    
Sbjct:   123 ARLFFDLLKGPIATADLVVAHDGFTAGAELGYDISSAKVNKYSVGVGYANLNYGLAATAT 182

Query:   177 NKGDSLAASYYHFVNPLTAVGAEVI-HSFSTTDNTITVGTQHILDPLTTLKARVNNAGIA 235
             +     +A+Y+H V+PL  VGA+    S  +++  +   T++ LD  + +KA++ ++G+ 
Sbjct:   183 SNLSVFSAAYFHKVSPLVQVGAKATWDSIKSSNVNVEFATKYALDNTSFIKAKIADSGLT 242

Query:   236 SALIQHEWRPKSLFTISGEVDT-KAIEKSAKFGLALA 271
             +     E RP     +    D  K  E   K G +L+
Sbjct:   243 ALSYTQELRPGVKLGLGASFDALKLAEPVHKLGFSLS 279

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMX3	VDAC3_ARATH	No assigned EC number	0.7007	1.0	1.0	no	no
P46274	VDAC1_WHEAT	No assigned EC number	0.6739	0.9963	0.9927	N/A	no
P42057	VDAC_MAIZE	No assigned EC number	0.6125	0.9781	0.9675	N/A	no
P42056	VDAC2_SOLTU	No assigned EC number	0.7898	1.0	0.9927	N/A	no
P42055	VDAC1_SOLTU	No assigned EC number	0.8333	1.0	0.9927	N/A	no
P42054	VDAC_PEA	No assigned EC number	0.7826	1.0	0.9927	N/A	no
Q6K548	VDAC1_ORYSJ	No assigned EC number	0.6838	0.9890	0.9890	yes	no
Q9SRH5	VDAC1_ARATH	No assigned EC number	0.7608	1.0	0.9927	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVII0327 SubName- Full=Putative uncharacterized protein; (275 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	1e-100
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-92
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	2e-12
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	2e-12

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  293 bits (752), Expect = e-100
 Identities = 129/272 (47%), Positives = 164/272 (60%), Gaps = 8/272 (2%)

Query: 4   GPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKK--GELFLADVNTQL 60
            PG Y DIGK+ARDLL KDY  D  K  +TT SP GVA T SG+K   G L   D   + 
Sbjct: 1   NPGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKY 60

Query: 61  KNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFK-VPDQ--RSGKVELQYLHDYAG 116
           K+K +T  LK DT ++L T  TV++  APGLK  LS + VP    +S K+EL+Y  D   
Sbjct: 61  KDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFT 120

Query: 117 ISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLN 176
            S  VGL   PIV  SA+ G   L+LG +  +D+ SG  TK NA L +   D IASL LN
Sbjct: 121 ASLKVGLLKGPIVVGSALQGVTGLALGAEAVYDTASGKLTKYNAALGYAARDYIASLTLN 180

Query: 177 NKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIAS 236
           NKGD L ASYYH V+    VGAE+  +FS+ + T TVG ++ LDP TT+KA+V++ G   
Sbjct: 181 NKGDVLTASYYHKVSDKLEVGAELTWNFSSNETTTTVGYKYDLDPSTTVKAKVDSNGKVG 240

Query: 237 ALIQHEWRPKSLFTISGEVDT-KAIEKSAKFG 267
            L++   RP    T+S EVD  K IE + KFG
Sbjct: 241 LLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  274 bits (702), Expect = 2e-92
 Identities = 109/277 (39%), Positives = 148/277 (53%), Gaps = 9/277 (3%)

Query: 5   PGLYTDIGKKARDLLYKDYQ-SDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
           P  Y DIGK A+DLL K Y     K  + T +P GV  TS+G+KK +      + + K K
Sbjct: 1   PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK 60

Query: 64  N--ITTDLKVDTASNLFTTITVDEP-APGLKTILSFKVP---DQRSGKVELQYLHDYAGI 117
              +T   K +T + L T IT+++  APGLK  L    P    ++SGK++  Y HD   I
Sbjct: 61  IKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPINI 120

Query: 118 STSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNN 177
           +  V L   P+V  SAV+G     LG ++ +D+    FTK N  L + N D   SL LNN
Sbjct: 121 NADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN 180

Query: 178 KGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASA 237
            G +L  SY+H V+P  AVGA+V     T + T  VG Q+ LDP   +KA+VNN G    
Sbjct: 181 -GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL 239

Query: 238 LIQHEWRPKSLFTISGEVDTKA-IEKSAKFGLALALK 273
             QH+ RP    T+S   D K   +   KFGL+L+LK
Sbjct: 240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 65/273 (23%), Positives = 107/273 (39%), Gaps = 15/273 (5%)

Query: 8   YTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK---- 63
           Y ++GK ARDL  K Y    K  + T S      + S   +       V   L+ K    
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWS 61

Query: 64  --NITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTS 120
              +T   K +T + L   ITV D+ + GLK+          +GK   +    Y  I+  
Sbjct: 62  PYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSF-SPNTGKKNAKIKTGYKRINLG 120

Query: 121 VGLT---ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNN--ADLIASLNL 175
             +    A P++  + V+G      G  + F++ S   T+ N  + +     +  A  N+
Sbjct: 121 CDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRV-TQSNFAVGYKTDYNEFQAHTNV 179

Query: 176 NNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIA 235
           N+ G     S YH VN    VG  +  +   ++    +  ++ +DP     A VNN+ + 
Sbjct: 180 ND-GTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLV 238

Query: 236 SALIQHEWRPKSLFTISGEVDTKAIEKSAKFGL 268
                   +P    T+S  +D KA       GL
Sbjct: 239 GLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGL 271

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 64/300 (21%), Positives = 113/300 (37%), Gaps = 57/300 (19%)

Query: 5   PGLYTDIGKKARDLLYKDY----------------QSDHKFTITTYSPTG---VAITSSG 45
           PG + ++ ++ +++   D+                Q  H   + + S T       T  G
Sbjct: 4   PGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVG 63

Query: 46  TKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGK 105
            K+      D+               D   NL   I        L++ L  ++  Q S  
Sbjct: 64  DKQYPFLQGDI---------------DNDGNLNARIIHQ-LGDRLRSKLQAQL--QDSKF 105

Query: 106 VELQYLHDYAGISTSVGLT-ANP-IVNFSAVIG-------TNVLSLGTDLSFDSKSGNFT 156
              Q   DY G   +  L  ANP I+N + +         T  L+LG +L +    GN  
Sbjct: 106 NMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGN-- 163

Query: 157 KCNAGLSF----NNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTIT 212
              + LS+       + IAS  L  +G  L  SYY  ++    +G E+  +  T ++T T
Sbjct: 164 -GISVLSYAARYTAGNWIASGQLGAQG-GLHLSYYRKLSDKLQLGVELELNLRTRESTAT 221

Query: 213 VGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272
           +G Q+     +  +  +++ G  SA+++          +SGE++        KFG  L +
Sbjct: 222 LGYQYDF-RQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVK--NDYKFGFGLTI 278

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	100.0
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	99.84
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.47
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	99.06
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.9
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.71
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.97
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.39
KOG3296	308	consensus Translocase of outer mitochondrial membr	97.28
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	92.49
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	90.87
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	90.2
PRK10716	435	long-chain fatty acid outer membrane transporter;	90.14
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	88.41
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	84.45
PF11383	319	DUF3187: Protein of unknown function (DUF3187); In	84.44
PF03349	427	Toluene_X: Outer membrane protein transport protei	83.95
PRK10993	314	outer membrane protease; Reviewed	81.23

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=8.1e-59  Score=409.38  Aligned_cols=268  Identities=41%  Similarity=0.606  Sum_probs=255.6

Q ss_pred             CCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeecCeEEEEEEcCCCceEEEE
Q 023981            5 PGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNKNITTDLKVDTASNLFTTI   81 (274)
Q Consensus         5 P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~g~l~~~~   81 (274)
                      ||+|.||+|.|||||++||+|+ |+|+|++++++|++|++++....  +++.|.+|++|+.++++++++|+++|++.+++
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v   80 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI   80 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence            8999999999999999999975 99999999999999999998766  69999999999999999999999999999999


Q ss_pred             EEcc-CCCCcEEEEEEEcc---CCCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCCCccce
Q 023981           82 TVDE-PAPGLKTILSFKVP---DQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTK  157 (274)
Q Consensus        82 ~~~~-~~~glk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~~~~~~  157 (274)
                      ++++ +.||+|+.+.+.+|   +.++++++++|+|+++++++.+++...|.++.++++++++|++|+|+.||...+.+++
T Consensus        81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~  160 (276)
T cd07306          81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK  160 (276)
T ss_pred             EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence            9999 77999999999975   3678999999999999999999998789999999999999999999999999888999


Q ss_pred             eeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEE
Q 023981          158 CNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASA  237 (274)
Q Consensus       158 ~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~  237 (274)
                      |+++++|+.+||++++++.+ ++.+.+|||||+++++++|+|+.|++..+++++++|+||.+++++++|||||++|.+++
T Consensus       161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~  239 (276)
T cd07306         161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL  239 (276)
T ss_pred             EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEE
Confidence            99999999999999999986 78999999999999999999999999889999999999999888999999999999999


Q ss_pred             EEEEeecCCeEEEEEEEEeccccc-CCceeEEEEEEc
Q 023981          238 LIQHEWRPKSLFTISGEVDTKAIE-KSAKFGLALALK  273 (274)
Q Consensus       238 ~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~  273 (274)
                      +|+++|+|++++++|+++|++++. +.||||++|+|+
T Consensus       240 ~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~  276 (276)
T cd07306         240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK  276 (276)
T ss_pred             EEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence            999999999999999999999885 799999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-57  Score=390.52  Aligned_cols=272  Identities=39%  Similarity=0.540  Sum_probs=256.5

Q ss_pred             CCCCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeec--CeEEEEEEcCCCc
Q 023981            2 GKGPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNK--NITTDLKVDTASN   76 (274)
Q Consensus         2 ~~~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~--~~~~~~~~d~~g~   76 (274)
                      +|.||+|.||+|.|||||++||+|+ +++++++++.+|++|++++....  .++.|.+|++|+++  +++++++|+++++
T Consensus         1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~   80 (281)
T KOG3126|consen    1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT   80 (281)
T ss_pred             CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence            4899999999999999999999998 89999999988999999998654  49999999999988  8999999999999


Q ss_pred             eEEEEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCC
Q 023981           77 LFTTITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKS  152 (274)
Q Consensus        77 l~~~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~  152 (274)
                      |.++|.+++ +.||||+.+.+.+|+   .+++|++++|.|+++++.+...+.++|.+.+++|++.++|++|+|+.||.+.
T Consensus        81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~  160 (281)
T KOG3126|consen   81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS  160 (281)
T ss_pred             cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence            999999987 999999999999866   7899999999999999988643457999999999999999999999999999


Q ss_pred             CccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCC
Q 023981          153 GNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA  232 (274)
Q Consensus       153 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~  232 (274)
                      +.+++|+++++|..+|+++++.++ ++..+.+|+|||+++.++++++++|.....++.++||.||.+|+.++|||||+++
T Consensus       161 ~~~t~~n~~lgy~~~d~~l~~~~n-n~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~  239 (281)
T KOG3126|consen  161 GKLTKYNAALGYTTEDFTLHLNLN-NGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNA  239 (281)
T ss_pred             CcEeeEEEEEEeecCCcEEEEEec-ccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCC
Confidence            999999999999999999999997 5779999999999999999999999998889999999999999999999999999


Q ss_pred             ceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEcC
Q 023981          233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP  274 (274)
Q Consensus       233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~~  274 (274)
                      |+++++|||+|+|++.+++|+++|.+++...||||++|+|+|
T Consensus       240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~  281 (281)
T KOG3126|consen  240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP  281 (281)
T ss_pred             ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence            999999999999999999999999999954599999999998

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=3.6e-51  Score=359.64  Aligned_cols=258  Identities=25%  Similarity=0.379  Sum_probs=225.4

Q ss_pred             cccccccccccccccCCCCcceEEEEEeCCCCcEEEEEEEec------CceeeEEEEEEEee--cCeEEEEEEcCCCceE
Q 023981            7 LYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKK------GELFLADVNTQLKN--KNITTDLKVDTASNLF   78 (274)
Q Consensus         7 ~f~dl~K~akDll~~~y~~~~~l~~~~~~~~g~~~~~~~~~~------~~~~~g~~~~~~~~--~~~~~~~~~d~~g~l~   78 (274)
                      +|+||+|+|||||++||++++|++|++..++  +|++++...      ...+.+.++.+|.+  .++++..+|++++++.
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~   78 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG   78 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence            5999999999999999999999999998876  688877643      34777888888754  3789999999999999


Q ss_pred             EEEEEcc-CCCCcEEEEEEEccCCCCceEEEEEeeccee----eeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCCC
Q 023981           79 TTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAG----ISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSG  153 (274)
Q Consensus        79 ~~~~~~~-~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~~  153 (274)
                      +++++.+ |.||+|+++++++++ ..++.++||+++|.+    .+..++. .+|.+..+++.++++|++|+|+.||+++ 
T Consensus        79 ~~~~~~~~~~~glk~~~~~~~~~-~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-  155 (274)
T cd07303          79 LEITVEDQLSRGLKSTFDSSFSP-NTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-  155 (274)
T ss_pred             EEEEEecccCCCeEEEEEEEECC-CCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-
Confidence            9999988 899999999999742 134455555555544    4434332 5798888999999999999999999987 


Q ss_pred             ccceeeeEEeEEc--CCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcC
Q 023981          154 NFTKCNAGLSFNN--ADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNN  231 (274)
Q Consensus       154 ~~~~~~~~~~y~~--~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds  231 (274)
                      ..++++++++|..  +||++++++.+ ++.+.+|||||+++++++|+|++|+.+++++.++||+||.+|+++++|||||+
T Consensus       156 ~~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids  234 (274)
T cd07303         156 RVTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNN  234 (274)
T ss_pred             cccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECC
Confidence            4689999999998  89999999975 78999999999999999999999998889999999999999888999999999


Q ss_pred             CceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981          232 AGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL  272 (274)
Q Consensus       232 ~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~  272 (274)
                      +|.|+++||++|+|+++|++|+++|++  +++||||+||+|
T Consensus       235 ~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~  273 (274)
T cd07303         235 SSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF  273 (274)
T ss_pred             CceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence            999999999999999999999999996  789999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=4.3e-48  Score=341.51  Aligned_cols=264  Identities=19%  Similarity=0.275  Sum_probs=233.7

Q ss_pred             CCCCcccccccccccccccCCCCcceEEEEEeCCCCcEEEEEEEec-Cc-eeeEEEEEEEeecC--eEEEEEEcCCCceE
Q 023981            3 KGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKK-GE-LFLADVNTQLKNKN--ITTDLKVDTASNLF   78 (274)
Q Consensus         3 ~~P~~f~dl~K~akDll~~~y~~~~~l~~~~~~~~g~~~~~~~~~~-~~-~~~g~~~~~~~~~~--~~~~~~~d~~g~l~   78 (274)
                      +|||+||||+|+||||++.+|..|.|++++....+.+.++.+.... .. ...+.+.+.|..++  +++.+++|++|+++
T Consensus         2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~l~   81 (279)
T cd07305           2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGNLN   81 (279)
T ss_pred             cCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCcee
Confidence            6999999999999999999998889999998766666666666532 22 55678888999888  99999999999999


Q ss_pred             EEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCe-EEEEEEEe-------cCccEEeEEEEEE
Q 023981           79 TTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPI-VNFSAVIG-------TNVLSLGTDLSFD  149 (274)
Q Consensus        79 ~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~-~~~s~v~~-------~~~~~lG~e~~~~  149 (274)
                      ++++++ |.+++++++.+++++.  .+...|+.+||.+.++++.++ .+|+ ++.+++++       +|+|++|+|+.|+
T Consensus        82 ~~~~~~-~~~~~~~k~~~~~~~~--~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~  158 (279)
T cd07305          82 ARIIHQ-LGDRLRSKLQAQLQDS--KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQ  158 (279)
T ss_pred             EEEEec-cCcceEEEEEEEecCC--CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEE
Confidence            999999 9999999999998763  446777777777777777776 5774 35666665       9999999999999


Q ss_pred             C-CCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEE
Q 023981          150 S-KSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKAR  228 (274)
Q Consensus       150 ~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~k  228 (274)
                      + +.++++.++++++|+.+||+++++++++ +.+.+|||||+++++++|+|++|+...+++.+++|+||.+ +++++||+
T Consensus       159 ~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~-~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~-~~~~~k~~  236 (279)
T cd07305         159 RVPGNGISVLSYAARYTAGNWIASGQLGAQ-GGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF-RQSRFRGS  236 (279)
T ss_pred             EcCCCCceeEEEEEEEccCCEEEEEEEcCC-CeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc-CCCEEEEE
Confidence            6 5677999999999999999999999864 5999999999999999999999999999999999999999 59999999


Q ss_pred             EcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981          229 VNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK  273 (274)
Q Consensus       229 vds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  273 (274)
                      ||++|.|+++||++|+|++++++|+++|++  ++++|||+||+|+
T Consensus       237 ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~  279 (279)
T cd07305         237 IDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG  279 (279)
T ss_pred             EcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence            999999999999999999999999999996  7899999999985

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=4.1e-47  Score=334.30  Aligned_cols=260  Identities=35%  Similarity=0.469  Sum_probs=226.4

Q ss_pred             CCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEec--Cc-eeeEEEEEEEeecCeEEEEEEcCCCceEE
Q 023981            4 GPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKK--GE-LFLADVNTQLKNKNITTDLKVDTASNLFT   79 (274)
Q Consensus         4 ~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~d~~g~l~~   79 (274)
                      |||.|+||+|+|||||+++|+|+ ++|+|+++++.+..|+.++...  .. .+.+.++++|.  +..+...|+.++...+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~   78 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL   78 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence            79999999999999999999997 9999999988999999999754  44 79999999998  5666677777777777


Q ss_pred             EEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEe-cCccEEeEEEEEECCCCc
Q 023981           80 TITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIG-TNVLSLGTDLSFDSKSGN  154 (274)
Q Consensus        80 ~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~-~~~~~lG~e~~~~~~~~~  154 (274)
                      ++.+.+ +.+++++++.+++++   .+..+++++|+++.+++.++++...+|.+.++.+.. +|+|++|+|+.|+...+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~  158 (273)
T PF01459_consen   79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK  158 (273)
T ss_dssp             EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred             EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence            777776 999999999999644   267889999999999999999875578889999985 669999999999999988


Q ss_pred             cceeeeEEeEEcC----CeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEc
Q 023981          155 FTKCNAGLSFNNA----DLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVN  230 (274)
Q Consensus       155 ~~~~~~~~~y~~~----~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvd  230 (274)
                      +.+|+++++|..+    +|++++++.++...+.+|||||+++++++|+|++|++..+++.++||++|.+++.+++|+|||
T Consensus       159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvd  238 (273)
T PF01459_consen  159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVD  238 (273)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEE
T ss_pred             cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEc
Confidence            9999998888888    999999996567899999999999999999999999999999999999999976669999999


Q ss_pred             CCceEEEEEEEeecCCeEEEEEEEEecccccCCceeE
Q 023981          231 NAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFG  267 (274)
Q Consensus       231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G  267 (274)
                      ++|.|+++||++|+|+++|++|+++|++  +..||||
T Consensus       239 s~g~v~~~~~~~l~~~~~l~ls~~~d~~--~~~~KfG  273 (273)
T PF01459_consen  239 SNGRVSASYEQKLNPGVTLTLSAELDHK--NNNHKFG  273 (273)
T ss_dssp             TTSEEEEEEEEEECTTEEEEEEEEECTT---C-EEEE
T ss_pred             CCCEEEEEEEEecCCCcEEEEEEEEccC--CCCCCcC
Confidence            9999999999999999999999999997  4489998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-36  Score=261.82  Aligned_cols=255  Identities=16%  Similarity=0.229  Sum_probs=211.8

Q ss_pred             CCCCcccccccccccccccCCCCcceEEEEE----------------eCCCCcEEEEEEEecCceeeEEEEEEEeecCeE
Q 023981            3 KGPGLYTDIGKKARDLLYKDYQSDHKFTITT----------------YSPTGVAITSSGTKKGELFLADVNTQLKNKNIT   66 (274)
Q Consensus         3 ~~P~~f~dl~K~akDll~~~y~~~~~l~~~~----------------~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~   66 (274)
                      .||++|++|+++|+ +++.-+ ++.+++++.                ..+.|+.|..+++       |.+++.|..+.+.
T Consensus        28 ~Npgt~e~L~~~~~-~~p~~~-~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty~-------~~~q~~~~~~~~i   98 (308)
T KOG3296|consen   28 LNPGTVEELHSEAS-VDPTLS-EGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTYV-------YTFQASPTEAFLI   98 (308)
T ss_pred             CCcHHHHHhhhhhc-cCceee-cceEeeecccccCceEeccceecccCccccceecccee-------eeeccccCCCcce
Confidence            58999999999997 444332 234444443                3333444444332       4444455555689


Q ss_pred             EEEEEcCCCceEEEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCeEEEEEEE-------ecC
Q 023981           67 TDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVI-------GTN  138 (274)
Q Consensus        67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~~~s~v~-------~~~  138 (274)
                      +.+.+|++|++++++.++ |.++|+.++..|+++.+  .++.|+..++++.+.+..+. .+|.+..++++       +||
T Consensus        99 l~G~vD~~Gslna~l~~~-l~~~Lr~K~~~q~~~~k--~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~  175 (308)
T KOG3296|consen   99 LRGDVDNDGSLNARLIHQ-LTDNLRSKVALQIQQSK--EVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTP  175 (308)
T ss_pred             EEEecCCCCchhheeecc-cchhhHHHHHHHhcchh--hhccccccceecccccccccccCcccccchHHHHHHHhhhcc
Confidence            999999999999999999 99999999888876533  58999999999999999877 68886566765       399


Q ss_pred             ccEEeEEEEEEC-CCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEE
Q 023981          139 VLSLGTDLSFDS-KSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQH  217 (274)
Q Consensus       139 ~~~lG~e~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y  217 (274)
                      +|++|+|+.|+. +.......+.++||...+|.++++++.  ..++++||||..++++.|+|++++.+-+++..+++++|
T Consensus       176 ~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~  253 (308)
T KOG3296|consen  176 RLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGY  253 (308)
T ss_pred             cccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEe
Confidence            999999999998 445677888999999999999999984  37899999999999999999999998889999999999


Q ss_pred             ee-CCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981          218 IL-DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK  273 (274)
Q Consensus       218 ~~-d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  273 (274)
                      ++ .+++.+||+|||+|.|++++|+||.++++|.+|+++||.  +.++|||+||+|.
T Consensus       254 ~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~--k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  254 DLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHV--KNDFKFGFGLTIG  308 (308)
T ss_pred             eccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeeccc--ccccccceeEEeC
Confidence            98 678999999999999999999999779999999999995  8899999999974

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=99.84  E-value=2.9e-20  Score=147.58  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=113.6

Q ss_pred             CCCCccccccccc-ccccccCCCC-cceEEEEEeCCCCcEEEEEEE---ecCceeeEEEEEEEeecCeEEEEEEcCCCce
Q 023981            3 KGPGLYTDIGKKA-RDLLYKDYQS-DHKFTITTYSPTGVAITSSGT---KKGELFLADVNTQLKNKNITTDLKVDTASNL   77 (274)
Q Consensus         3 ~~P~~f~dl~K~a-kDll~~~y~~-~~~l~~~~~~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~g~l   77 (274)
                      .|||+||+|+|+| ||++.+.|.| |.|++++....-+-.|..+++   +....+.+.+.+.|..+++++.+++|++|+|
T Consensus         2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l   81 (161)
T TIGR00989         2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV   81 (161)
T ss_pred             cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence            6999999999999 9999999999 599999877433345555554   3344556777788887788999999999999


Q ss_pred             EEEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCeE-E--EEEEE-------ecCccEEeEEE
Q 023981           78 FTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPIV-N--FSAVI-------GTNVLSLGTDL  146 (274)
Q Consensus        78 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~-~--~s~v~-------~~~~~~lG~e~  146 (274)
                      +++++++ |.++++.|+++|+.+.+  ...+|.++||.+.|+++.++ .||.+ +  +++++       +||+|+||+|+
T Consensus        82 ~ar~~~~-~~~~~~~K~~~Q~~~~~--~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~  158 (161)
T TIGR00989        82 STRLNYR-WGDRTISKVQFQISGGQ--PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEA  158 (161)
T ss_pred             EEEEEEe-eCcceeEEEEEEecCCC--CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcceeeeeee
Confidence            9999999 99999999999975422  25666666666667777766 57875 3  25664       49999999999


Q ss_pred             EEE
Q 023981          147 SFD  149 (274)
Q Consensus       147 ~~~  149 (274)
                      .|+
T Consensus       159 ~yq  161 (161)
T TIGR00989       159 LWQ  161 (161)
T ss_pred             EeC
Confidence            985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.47  E-value=9.5e-11  Score=103.68  Aligned_cols=184  Identities=16%  Similarity=0.181  Sum_probs=129.3

Q ss_pred             EEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecc--eeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCC
Q 023981           80 TITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDY--AGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKS  152 (274)
Q Consensus        80 ~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~  152 (274)
                      |+++.. +.+.+.+.=...+..   ...-.++..|..+.  .-+..+++-..  .++..... ..+++  -.++..+.+.
T Consensus        27 r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g--~l~~~~~~~~~~~~--~~k~~~~~~~  102 (279)
T cd07305          27 RLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDG--NLNARIIHQLGDRL--RSKLQAQLQD  102 (279)
T ss_pred             EEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCC--ceeEEEEeccCcce--EEEEEEEecC
Confidence            344333 666655544444322   23456888888887  66666665321  23333332 23444  4444444444


Q ss_pred             CccceeeeEEeEEcCCeEEEEEEccC-----CceEEEEEEEEeCCceeEEEEEEEE--eccCccEEEEEEEEeeCCCCeE
Q 023981          153 GNFTKCNAGLSFNNADLIASLNLNNK-----GDSLAASYYHFVNPLTAVGAEVIHS--FSTTDNTITVGTQHILDPLTTL  225 (274)
Q Consensus       153 ~~~~~~~~~~~y~~~~~~~~~~~~~~-----~~~~~~sy~~kv~~~~~~g~e~~~~--~~~~~~~~~vg~~y~~d~~~~~  225 (274)
                      .....+.+...|+++||++++++.+.     ...+.++|.|+|+|++++|+|+.|.  ...+.+..++|++|.- +++++
T Consensus       103 ~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~  181 (279)
T cd07305         103 SKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIA  181 (279)
T ss_pred             CCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEE
Confidence            45678999999999999999997643     1589999999999999999999999  5678899999999999 78999


Q ss_pred             EEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEE
Q 023981          226 KARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLAL  270 (274)
Q Consensus       226 k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l  270 (274)
                      .+++++.+.+.++|-|+++|++.+..-.+.+..  ..+..+.+|.
T Consensus       182 s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~--~~es~~tvg~  224 (279)
T cd07305         182 SGQLGAQGGLHLSYYRKLSDKLQLGVELELNLR--TRESTATLGY  224 (279)
T ss_pred             EEEEcCCCeEEEEEEEEcccceEeeeeeeeccc--CCceeEEEEE
Confidence            999999999999999999997666555555543  3333444433

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=99.06  E-value=4.8e-07  Score=79.40  Aligned_cols=132  Identities=19%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEcc-CCceEEEEEEEEeCCceeEEEEEEEEeccCccE-----
Q 023981          137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNN-KGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNT-----  210 (274)
Q Consensus       137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~-----  210 (274)
                      .++|.+=.+..+.... ....+.+.+.|..+++.+.+.+.. ....+.+||.|.+.|++.+|+|+.|+...++..     
T Consensus        87 ~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~  165 (273)
T PF01459_consen   87 SPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAG  165 (273)
T ss_dssp             TTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEE
T ss_pred             CcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEE
Confidence            6776665555544332 236788899999999999999874 135899999999999999999999998876665     


Q ss_pred             EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981          211 ITVGTQHILDPLTTLKARV-NNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL  272 (274)
Q Consensus       211 ~~vg~~y~~d~~~~~k~kv-ds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~  272 (274)
                      ++++.+|.- ++.++.+++ ++.+.+.++|-|++++.+.+..-.+.+..  .....+.+|...
T Consensus       166 ~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~--~~~~~~~vG~~~  225 (273)
T PF01459_consen  166 LSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLS--SRESTFTVGYQY  225 (273)
T ss_dssp             EEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETT--CCEEEEEEEEEE
T ss_pred             EEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeeccc--CCCceEEEEEEE
Confidence            555555554 699999999 67899999999999999999888888774  344555555543

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.90  E-value=2.2e-06  Score=75.73  Aligned_cols=172  Identities=15%  Similarity=0.129  Sum_probs=113.8

Q ss_pred             CCcEEEEEEEec--CceeeEEEEEEEeecCeEEEEEEcCC--CceEEEEEEccCCCCcEEEEEEEc--cCC--CCceEEE
Q 023981           37 TGVAITSSGTKK--GELFLADVNTQLKNKNITTDLKVDTA--SNLFTTITVDEPAPGLKTILSFKV--PDQ--RSGKVEL  108 (274)
Q Consensus        37 ~g~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~--g~l~~~~~~~~~~~glk~~~~~~~--~~~--~~~~~~~  108 (274)
                      .|+.......-.  .+.-.+.+++.|..+.+.+...++-.  -.+...+.+.  .+++-+-.++.+  ...  ....+.+
T Consensus        88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (276)
T cd07306          88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL  165 (276)
T ss_pred             CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence            455555444322  34667778888877755555555443  2334444444  366655555543  111  1234678


Q ss_pred             EEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEcCC-eEEEEEEccCCceEEEEE
Q 023981          109 QYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNAD-LIASLNLNNKGDSLAASY  186 (274)
Q Consensus       109 ~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~sy  186 (274)
                      +|.++.+.+..++.  ..-.+.+|... +.+++++|+|+.|+...+ -..+++|++|.-++ +.+.+++++++ .+.++|
T Consensus       166 ~Y~~~d~~~s~~l~--~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~-~~~~~vg~~y~l~~~~~vkakv~~~g-~v~~~y  241 (276)
T cd07306         166 GYTNGDFELSLKLN--NGKTLRGSYFHKVSPRLAVGAKVTWYSGTN-ETTFAVGGQYALDPDALVKAKVNNDG-QLGLSY  241 (276)
T ss_pred             EEecCCeEEEEEEC--CCCEEEEEEEEEcCCCeEEEEEEEEecCCC-CcEEEEEEEEEcCCCCEEEEEECCCc-eEEEEE
Confidence            88888776665553  23346677665 689999999999997654 36899999998664 99999998765 999999


Q ss_pred             EEEeCCceeEEEEEEEEecc---CccEEEEE
Q 023981          187 YHFVNPLTAVGAEVIHSFST---TDNTITVG  214 (274)
Q Consensus       187 ~~kv~~~~~~g~e~~~~~~~---~~~~~~vg  214 (274)
                      .|+++|++.+....+.+...   +...+.+|
T Consensus       242 ~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~  272 (276)
T cd07306         242 QHKLRPGVTLTLSAGFDAKNLNQGGHKFGLS  272 (276)
T ss_pred             EEEcCCCcEEEEEEEeeccCcCCCCCeEEEE
Confidence            99999998888777776544   44444444

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.71  E-value=1.9e-05  Score=69.72  Aligned_cols=132  Identities=14%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccC--ccEEEEE
Q 023981          137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTT--DNTITVG  214 (274)
Q Consensus       137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~--~~~~~vg  214 (274)
                      .+++.+=.++.++.... .....+-..|+++++.+.+.+.+.+ -+..++.+.+.+++.+|+|+.|+..++  +..+.++
T Consensus        88 ~~glk~~~~~~~~~~~~-~~~~q~~~~y~~~~~~~~l~~~~~g-p~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (274)
T cd07303          88 SRGLKSTFDSSFSPNTG-KKNAKIKTGYKRINLGCDVDFDIAG-PLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVG  165 (274)
T ss_pred             CCCeEEEEEEEECCCCc-cEEEEEeccEEcCCeeEEEEeecCC-CEEEEEEEEeecceEEEEEEEEeccccccccceEEE
Confidence            67888777777764332 3456677799999999999996444 677789999999999999999997442  2334444


Q ss_pred             EEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981          215 TQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK  273 (274)
Q Consensus       215 ~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  273 (274)
                      +.-.. ++..+-+++++.+.+.++|-||++|.+.+.+-.+.+..  .++..+.+|...+
T Consensus       166 y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~y~  221 (274)
T cd07303         166 YKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAKYQ  221 (274)
T ss_pred             EEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEEEe
Confidence            32222 57778899988899999999999998888777666653  4456666665543

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.97  E-value=0.00083  Score=53.92  Aligned_cols=64  Identities=20%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCc--------eEEEEEEEEeCCceeEEEEEEEE
Q 023981          137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD--------SLAASYYHFVNPLTAVGAEVIHS  203 (274)
Q Consensus       137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--------~~~~sy~~kv~~~~~~g~e~~~~  203 (274)
                      ++++..=.++.  ....+...+.+-..|+++||++++++.+ ++        .+.+||.|.|+|++++|+|+.|.
T Consensus        90 ~~~~~~K~~~Q--~~~~~~~~~Q~e~DY~G~Dft~~lk~~N-p~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq  161 (161)
T TIGR00989        90 GDRTISKVQFQ--ISGGQPDMCQFEHDHLGDDFSASLKAIN-PSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ  161 (161)
T ss_pred             CcceeEEEEEE--ecCCCCceEEEEEEecCCeEEEEEEEcC-cccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence            45544444433  3333446677778999999999999985 32        67999999999999999999984

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.035  Score=48.80  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=72.3

Q ss_pred             EEEEEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEc-CCeEEEEEEccCCceEE
Q 023981          106 VELQYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNN-ADLIASLNLNNKGDSLA  183 (274)
Q Consensus       106 ~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~  183 (274)
                      +.+.|..+.+.+...++  +.-.+..|... +...+..|.++.|..... -+.++++.+|.- ++..+.+++++ ...+.
T Consensus       168 ~~lgy~~~d~~l~~~~n--n~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn-~g~~g  243 (281)
T KOG3126|consen  168 AALGYTTEDFTLHLNLN--NGTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNN-AGLAG  243 (281)
T ss_pred             EEEEeecCCcEEEEEec--ccchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecC-Cceee
Confidence            56666666655544442  22222333322 355589999999987765 578999999974 56778999985 45999


Q ss_pred             EEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEee
Q 023981          184 ASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHIL  219 (274)
Q Consensus       184 ~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~  219 (274)
                      +.|-|++.|.+.++...+.+...-...-.+|..+.|
T Consensus       244 l~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~  279 (281)
T KOG3126|consen  244 LGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL  279 (281)
T ss_pred             EEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence            999999999977777777765432111334444444

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.00018  Score=63.63  Aligned_cols=133  Identities=15%  Similarity=0.172  Sum_probs=95.1

Q ss_pred             cCccEEeEEEEEECCC------------CccceeeeEEeEEcCCeEEEEEEcc-C---CceEEEEEEEEeCCceeEEEEE
Q 023981          137 TNVLSLGTDLSFDSKS------------GNFTKCNAGLSFNNADLIASLNLNN-K---GDSLAASYYHFVNPLTAVGAEV  200 (274)
Q Consensus       137 ~~~~~lG~e~~~~~~~------------~~~~~~~~~~~y~~~~~~~~~~~~~-~---~~~~~~sy~~kv~~~~~~g~e~  200 (274)
                      -..-.+.+.+.++...            ++...+..-..|+..|+++++...+ +   -..+.++|.|.+++++++|+|+
T Consensus       104 D~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El  183 (308)
T KOG3296|consen  104 DNDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGEL  183 (308)
T ss_pred             CCCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccccccccee
Confidence            5556777777776432            2344577778899999999888763 1   1367789999999999999999


Q ss_pred             EEEe--ccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccc-cCCceeEEEEEE
Q 023981          201 IHSF--STTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAI-EKSAKFGLALAL  272 (274)
Q Consensus       201 ~~~~--~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~-~~~~K~G~~l~~  272 (274)
                      .|..  ...++.+++++||.. .....-+.+...|.-...| +|+.+++......+.|.. + +...-+++++.+
T Consensus       184 ~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~y~-~r~~~~~~~~ve~~~~~~-~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  184 LYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLTGTYY-QRAVEKLQMGVEFETNTR-LQSTDVTAAYGYDL  255 (308)
T ss_pred             EeccCCCccccceeeeeeeee-cceeeEEecccccceehhh-hhhhhhhccceeEeeecc-cCCcceEEEEEeec
Confidence            9998  457899999999999 5666666777766655444 466677777777777663 2 234555555543

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=92.49  E-value=8.4  Score=35.26  Aligned_cols=46  Identities=11%  Similarity=0.102  Sum_probs=34.4

Q ss_pred             EEcCCceEEEEEEEeecCCeEEEEEEEEeccccc------CCceeEEEEEEc
Q 023981          228 RVNNAGIASALIQHEWRPKSLFTISGEVDTKAIE------KSAKFGLALALK  273 (274)
Q Consensus       228 kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~------~~~K~G~~l~~~  273 (274)
                      +-|....+++.++.++++.+.+.++....-++-.      ..+.+++++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            7777888999999999998888888776654321      236888888764

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=90.87  E-value=3.8  Score=35.77  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             cCccEEeEEEEEECCCCccceeeeEEeEE------cCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEE
Q 023981          137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFN------NADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIH  202 (274)
Q Consensus       137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~  202 (274)
                      ..+|.+|+|+-|-.... --..+.++||.      +..+++++++++-..-+..+|--|.++.+++.+++.+
T Consensus       189 ~~r~S~GaE~yys~~~k-s~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~~SrfdF  259 (260)
T PF12519_consen  189 YGRFSAGAELYYSALNK-SPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAFCSRFDF  259 (260)
T ss_pred             cceEeeccEEEEEeecc-CCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceEEeeccc
Confidence            44999999999976543 33577888995      3569999999986568999999999999988887654

Proteins in this family are typically between 415 and 473 amino acids in length.

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=90.20  E-value=7.4  Score=36.77  Aligned_cols=76  Identities=11%  Similarity=-0.062  Sum_probs=49.8

Q ss_pred             CceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEc---CCceEEEEEEEeecCCeEEEEEEEE
Q 023981          179 GDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVN---NAGIASALIQHEWRPKSLFTISGEV  255 (274)
Q Consensus       179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvd---s~g~v~~~~~~~l~~~~~l~ls~~~  255 (274)
                      +..+..+++|+++|++.+...+.|..=++=..+.+-..  . ....+....+   +.+.+++.-++++++.+++..+...
T Consensus       285 P~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~--~-~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiay  361 (440)
T COG2067         285 PASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT--F-GKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAY  361 (440)
T ss_pred             CcEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc--C-CCccccccccccccccEEeeeceeEcCccceEeeeeee
Confidence            56889999999999999999999986443333333222  2 3334444333   5566666666677666666666666


Q ss_pred             ec
Q 023981          256 DT  257 (274)
Q Consensus       256 d~  257 (274)
                      |.
T Consensus       362 D~  363 (440)
T COG2067         362 DQ  363 (440)
T ss_pred             cC
Confidence            65

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=90.14  E-value=7.3  Score=36.77  Aligned_cols=76  Identities=11%  Similarity=-0.055  Sum_probs=47.8

Q ss_pred             CCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCC--CeEEEEEcCCceEEEEEEEeecCCeEEEEEEEE
Q 023981          178 KGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPL--TTLKARVNNAGIASALIQHEWRPKSLFTISGEV  255 (274)
Q Consensus       178 ~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~--~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~  255 (274)
                      .+..+.++..|+++|++.+.+.+.|..=+.-..+.+-  +. +..  ...--.-.+.+.+++..++++++.++|..+...
T Consensus       285 ~P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~--~~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~y  361 (435)
T PRK10716        285 LPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKAT--SS-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAF  361 (435)
T ss_pred             CCcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEE--eC-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeEe
Confidence            3568899999999999999999999643322222221  10 000  011112345667777777778777777777777


Q ss_pred             e
Q 023981          256 D  256 (274)
Q Consensus       256 d  256 (274)
                      |
T Consensus       362 d  362 (435)
T PRK10716        362 D  362 (435)
T ss_pred             c
Confidence            7

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=88.41  E-value=14  Score=34.91  Aligned_cols=94  Identities=13%  Similarity=0.042  Sum_probs=51.6

Q ss_pred             EEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEE---EccCCceEEEEEEEEeCCceeEEEEEEEEec
Q 023981          130 NFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLN---LNNKGDSLAASYYHFVNPLTAVGAEVIHSFS  205 (274)
Q Consensus       130 ~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~  205 (274)
                      +.+... ..++|++.+.+.|-.=+ ++.+..+...  ...-....+   .. ++..+.+.--|+++|++++-+-+.|+..
T Consensus       289 el~~~~~~~d~w~~~~s~~wT~WS-~f~~l~~~~~--~~~~~~~~~~~~yr-D~wt~a~G~~Y~~nd~~tlragiayD~s  364 (440)
T COG2067         289 ELSGQHKVADQWAIHGSVKWTDWS-SFDKLDFVFT--FGKTLFAKTEDGYR-DTWTVALGTTYKFNDQWTLRAGIAYDQS  364 (440)
T ss_pred             EEeeeeccCCCeEEEEEEEEeecc-CCceEEEEEc--CCCccccccccccc-cccEEeeeceeEcCccceEeeeeeecCC
Confidence            444443 47888888888774221 2333332211  111111111   22 2445666667778888887777777643


Q ss_pred             -------------cCccEEEEEEEEeeCCCCeEEE
Q 023981          206 -------------TTDNTITVGTQHILDPLTTLKA  227 (274)
Q Consensus       206 -------------~~~~~~~vg~~y~~d~~~~~k~  227 (274)
                                   .....+++|..|+++++..+.+
T Consensus       365 ~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~  399 (440)
T COG2067         365 PSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA  399 (440)
T ss_pred             CCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence                         2234577788888877776654

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=84.45  E-value=32  Score=31.38  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             eeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccC------CceeE
Q 023981          194 TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEK------SAKFG  267 (274)
Q Consensus       194 ~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~------~~K~G  267 (274)
                      +.+.+.+.|.+. ..+++++.+...+.+....-+--...-.+++.+.|+|++++.+.+.+.....+..+      .+.+|
T Consensus       259 ~~~~~~l~w~pt-~~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~  337 (381)
T PF10082_consen  259 PSWDASLTWSPT-PKTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQGSDREDDTYSAG  337 (381)
T ss_pred             eEEEEEEEEecc-CceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcCCCCceeeEEEEE
Confidence            667777777764 56788888888884442333333333557888899999999999998887765532      25666


Q ss_pred             EEEEEc
Q 023981          268 LALALK  273 (274)
Q Consensus       268 ~~l~~~  273 (274)
                      +++...
T Consensus       338 ~~~~y~  343 (381)
T PF10082_consen  338 LGLTYR  343 (381)
T ss_pred             EEEEEE
Confidence            666654

>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria

Probab=84.44  E-value=31  Score=31.18  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=42.5

Q ss_pred             CccEEEEEEEEeeCCCCeEEEEEcCC--------------ceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981          207 TDNTITVGTQHILDPLTTLKARVNNA--------------GIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL  272 (274)
Q Consensus       207 ~~~~~~vg~~y~~d~~~~~k~kvds~--------------g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~  272 (274)
                      ....+.+|++|++.++..++++++..              ..+.+.|+.++.++..+.++..=|..++++.+-|+|.+.+
T Consensus       236 ~~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l  315 (319)
T PF11383_consen  236 NTWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL  315 (319)
T ss_pred             ceEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence            44456677777776677777666542              3377778888877777777776666555555555555443

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=83.95  E-value=36  Score=31.52  Aligned_cols=80  Identities=9%  Similarity=-0.064  Sum_probs=50.7

Q ss_pred             CceEEEEEEEEeCCceeEEEEEEEEeccC-ccEEEEEEEEee---CCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEE
Q 023981          179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT-DNTITVGTQHIL---DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGE  254 (274)
Q Consensus       179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~-~~~~~vg~~y~~---d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~  254 (274)
                      +..+.+++.+++++++.+.++++|..=+. +...........   .....+.-.-.+.+.+.+..+.+++|.++|..+..
T Consensus       269 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G~~  348 (427)
T PF03349_consen  269 PASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAGYA  348 (427)
T ss_dssp             -EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEE
T ss_pred             ceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEEEE
Confidence            56899999999999999999999975322 211111211110   01233444455667788888888888888888888


Q ss_pred             Eecc
Q 023981          255 VDTK  258 (274)
Q Consensus       255 ~d~~  258 (274)
                      .|..
T Consensus       349 y~~s  352 (427)
T PF03349_consen  349 YDSS  352 (427)
T ss_dssp             EEE-
T ss_pred             Eecc
Confidence            7764

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

>PRK10993 outer membrane protease; Reviewed

Probab=81.23  E-value=41  Score=30.29  Aligned_cols=180  Identities=16%  Similarity=0.090  Sum_probs=95.7

Q ss_pred             EEEEEcCCCceEEEEEEccCCCCcEEEEEEE--ccCCCCceEEE--------EEeecceeeeEEEeCCCCCeEEE-EEEE
Q 023981           67 TDLKVDTASNLFTTITVDEPAPGLKTILSFK--VPDQRSGKVEL--------QYLHDYAGISTSVGLTANPIVNF-SAVI  135 (274)
Q Consensus        67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~v~l~~~p~~~~-s~v~  135 (274)
                      +.-++++..-|+++++.+ +.|.|++.....  +.........-        .|.+...+-+..++.-+.-+++. --++
T Consensus        63 LdW~~~n~~iik~~~~~~-~~~~lsl~a~gw~~l~s~~G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~w~l  141 (314)
T PRK10993         63 LDWKIKNAAIIKGDINWD-LLPRLSLGASGWTTLASGGGHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKGWLL  141 (314)
T ss_pred             eeccccCceEEEeecccc-cccceEEeeeEEEEEecCCCccccccccCCCCCCCcceecCCCCchhhhhhcceecceeee
Confidence            444555666688888888 999999888754  33211100111        13444444344343211222332 2223


Q ss_pred             ecCccEEeEEEEEECCCCccceeeeEEeEE--cC---CeEEEEEEccCCceEEEEEEEEeC-CceeEEEEEEEEeccCcc
Q 023981          136 GTNVLSLGTDLSFDSKSGNFTKCNAGLSFN--NA---DLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTTDN  209 (274)
Q Consensus       136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~--~~---~~~~~~~~~~~~~~~~~sy~~kv~-~~~~~g~e~~~~~~~~~~  209 (274)
                      .-++..+|.-+.|+...-  +-.+.++.|.  ..   +.+.+  + +++ ....+|-|+.. |.+-++++..+  .  .-
T Consensus       142 ~~~~yklG~~aGyqy~~~--sw~A~GG~y~Y~~~~~r~~~g~--f-Pd~-~~~I~Y~Q~f~~pyiGL~g~y~~--~--~~  211 (314)
T PRK10993        142 QNPNYRLGVMAGYQETRF--SWTAYGGSYIYSNGGFRDDIGT--F-PDG-ERGIGYKQRFKMPYIGLTGSYRY--D--DF  211 (314)
T ss_pred             cCCCceeeeEeeeEEEec--eeEccCceEEcCCCCCCCCccc--c-CCC-ccceeeEEEecceeeeEEEEEEe--c--cE
Confidence            578888888888886543  2233444443  33   22222  2 333 67789999985 44545444443  2  23


Q ss_pred             EEEEEEEEee-----------CCCCeEEEEEcCCce--EEEEEEEeecCCeEEEEEEEEec
Q 023981          210 TITVGTQHIL-----------DPLTTLKARVNNAGI--ASALIQHEWRPKSLFTISGEVDT  257 (274)
Q Consensus       210 ~~~vg~~y~~-----------d~~~~~k~kvds~g~--v~~~~~~~l~~~~~l~ls~~~d~  257 (274)
                      .+....+|..           .++.++|-++++.--  +.+.....++|++++-+++....
T Consensus       212 ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~~  272 (314)
T PRK10993        212 EFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYNR  272 (314)
T ss_pred             EEeeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEEE
Confidence            3333333321           134566665555422  45666677888888888776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
3emn_X	295	The Crystal Structure Of Mouse Vdac1 At 2.3 A Resol		4e-12
2jk4_A	294	Structure Of The Human Voltage-Dependent Anion Chan		4e-11
2k4t_A	291	Solution Structure Of Human Vdac-1 In Ldao Micelles		4e-11

>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution Length = 295

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 16/282 (5%)
Query: 5   PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
           P  Y D+GK ARD+  K Y     K  + T S  G+  TSSG+   E     VN  L+ K
Sbjct: 16  PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVNGSLETK 73
Query: 64  NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
              T+       K +T + L T ITV D+ A GLK T  S   P+  +++ K++  Y  +
Sbjct: 74  YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 133
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
           +  +   V    A P +  + V+G      G  ++F++     T+ N  + +   +    
Sbjct: 134 HINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLH 193
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
            N+N+ G     S Y  VN        +  +   ++    +  ++ +DP     A+VNN+
Sbjct: 194 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 252
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
            +         +P    T+S  +D K +     K GL L  +
Sbjct: 253 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel Length = 294

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 16/282 (5%)
Query: 5   PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
           P  Y D+GK ARD+  K Y     K  + T S  G+  TSSG+   E     V   L+ K
Sbjct: 7   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVTGSLETK 64
Query: 64  NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
              T+       K +T + L T ITV D+ A GLK T  S   P+  +++ K++  Y  +
Sbjct: 65  YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 124
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
           +  +   +    A P +  + V+G      G  ++F++     T+ N  + +   +    
Sbjct: 125 HINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLH 184
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
            N+N+ G     S Y  VN        +  +   ++    +  ++ +DP     A+VNN+
Sbjct: 185 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 243
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
            +         +P    T+S  +D K +     K GL L  +
Sbjct: 244 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285

>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles Length = 291

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 16/282 (5%)
Query: 5   PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
           P  Y D+GK ARD+  K Y     K  + T S  G+  TSSG+   E     V   L+ K
Sbjct: 4   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVTGSLETK 61
Query: 64  NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
              T+       K +T + L T ITV D+ A GLK T  S   P+  +++ K++  Y  +
Sbjct: 62  YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 121
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
           +  +   +    A P +  + V+G      G  ++F++     T+ N  + +   +    
Sbjct: 122 HINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLH 181
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
            N+N+ G     S Y  VN        +  +   ++    +  ++ +DP     A+VNN+
Sbjct: 182 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
            +         +P    T+S  +D K +     K GL L  +
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3emn_X	295	Voltage-dependent anion-selective channel protein;	2e-75

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  230 bits (588), Expect = 2e-75
 Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 12/281 (4%)

Query: 4   GPGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKN 62
            P  Y D+GK ARD+  K Y     K  + T S  G+  TSSG+   E    + + + K 
Sbjct: 15  VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKY 74

Query: 63  K----NITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQ---RSGKVELQYLHDY 114
           +     +T   K +T + L T ITV D+ A GLK             ++ K++  Y  ++
Sbjct: 75  RWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 134

Query: 115 AGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASL 173
             +   V    A P +  + V+G      G  ++F++     T+ N  + +   +     
Sbjct: 135 INLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHT 194

Query: 174 NLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAG 233
           N+N+ G     S Y  VN        +  +   ++    +  ++ +DP     A+VNN+ 
Sbjct: 195 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSS 253

Query: 234 IASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
           +         +P    T+S  +D K +     K GL L  +
Sbjct: 254 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.48
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	91.81
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	89.14
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	85.27
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	81.83

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=2.8e-66  Score=456.77  Aligned_cols=272  Identities=24%  Similarity=0.380  Sum_probs=259.9

Q ss_pred             CCCCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeecC--eEEEEEEcCCCc
Q 023981            2 GKGPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNKN--ITTDLKVDTASN   76 (274)
Q Consensus         2 ~~~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~~--~~~~~~~d~~g~   76 (274)
                      |.+||.|.||+|.|||||++||+++ ++|+|++++++|++|++++....  +++.|++|++|++++  ++++++|+++|+
T Consensus        13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~   92 (295)
T 3emn_X           13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT   92 (295)
T ss_dssp             CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred             cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence            5789999999999999999999999 99999999999999999998766  799999999999984  899999999999


Q ss_pred             eEEEEEEcc-CCCCcEEEEEEEc-cC--CCCceEEEEEeecceeeeEEEeCC-CCCeEEEEEEEecCccEEeEEEEEECC
Q 023981           77 LFTTITVDE-PAPGLKTILSFKV-PD--QRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSK  151 (274)
Q Consensus        77 l~~~~~~~~-~~~glk~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~~~s~v~~~~~~~lG~e~~~~~~  151 (274)
                      |.+++++++ ++||||+.+.+.+ |+  .++++++++|++++++++++++++ ++|.++.++|+++++|++|+|+.||.+
T Consensus        93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~  172 (295)
T 3emn_X           93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS  172 (295)
T ss_dssp             EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence            999999999 9999999999996 65  468999999999999999999994 799999999999999999999999999


Q ss_pred             CCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcC
Q 023981          152 SGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNN  231 (274)
Q Consensus       152 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds  231 (274)
                      .+++++|+++++|+.+||++++++++ +..+.+|||||+++++++|+|+.|..+.+++.++||+||++|+++++|||||+
T Consensus       173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~  251 (295)
T 3emn_X          173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNN  251 (295)
T ss_dssp             TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEET
T ss_pred             CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECC
Confidence            98999999999999999999999984 78999999999999999999999999889999999999999999999999999


Q ss_pred             CceEEEEEEEeecCCeEEEEEEEEeccccc-CCceeEEEEEEcC
Q 023981          232 AGIASALIQHEWRPKSLFTISGEVDTKAIE-KSAKFGLALALKP  274 (274)
Q Consensus       232 ~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~~  274 (274)
                      +|.|+++|||+|+|+++|++|++||+++++ +.||||++|+||+
T Consensus       252 ~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~  295 (295)
T 3emn_X          252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA  295 (295)
T ss_dssp             TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence            999999999999999999999999999884 7999999999986

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.48  E-value=0.00042  Score=60.53  Aligned_cols=183  Identities=15%  Similarity=0.171  Sum_probs=120.7

Q ss_pred             eEEEEEeCCCCcEEEEEEEe-cC-ceeeEEEEEEEeecCeEEEEEEcC--CC-ceEEEEEEccCCCCcEEEEEEEc--cC
Q 023981           28 KFTITTYSPTGVAITSSGTK-KG-ELFLADVNTQLKNKNITTDLKVDT--AS-NLFTTITVDEPAPGLKTILSFKV--PD  100 (274)
Q Consensus        28 ~l~~~~~~~~g~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~d~--~g-~l~~~~~~~~~~~glk~~~~~~~--~~  100 (274)
                      .+++......|+.......- +. +.-.+.+++.|+.+.+.+...+|-  .+ .+.....+.  .+++-+-.+..+  +.
T Consensus        96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~  173 (295)
T 3emn_X           96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK  173 (295)
T ss_dssp             EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred             EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence            45555544567666555542 33 355888999999887666444432  22 334433333  366665555543  22


Q ss_pred             CC--CceEEEEEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEc-CCeEEEEEEc
Q 023981          101 QR--SGKVELQYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNN-ADLIASLNLN  176 (274)
Q Consensus       101 ~~--~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~  176 (274)
                      .+  ...+.+.|..+.+.+..+++  ....+..|... +.+++.+|+|+.|....+ -....+|.+|.- ++.++.++++
T Consensus       174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~-~~~~tvG~ky~ld~~~~vKakvn  250 (295)
T 3emn_X          174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGNS-NTRFGIAAKYQVDPDACFSAKVN  250 (295)
T ss_dssp             TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTEE-EEEEEEEEEECCSSSEEEEEEEE
T ss_pred             CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccCC-CcEEEEEEEEEcCCCCEEEEEEC
Confidence            11  23467888888887777765  33456666665 689999999999997543 457888888986 6899999999


Q ss_pred             cCCceEEEEEEEEeCCceeEEEEEEEEecc---CccEEEEEEE
Q 023981          177 NKGDSLAASYYHFVNPLTAVGAEVIHSFST---TDNTITVGTQ  216 (274)
Q Consensus       177 ~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~---~~~~~~vg~~  216 (274)
                      +++ .+.+.|-|++.|.+.+..-.+.+...   +...+.+|..
T Consensus       251 ~~g-~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~  292 (295)
T 3emn_X          251 NSS-LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE  292 (295)
T ss_dssp             TTS-EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred             CCC-EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence            765 99999999999987666666665432   4455555543

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=91.81  E-value=7.1  Score=35.24  Aligned_cols=76  Identities=16%  Similarity=0.078  Sum_probs=50.8

Q ss_pred             CceEEEEEEEEeCCceeEEEEEEEEeccC--------------------------ccEEEEEEEEeeCCCCeEEEEEc--
Q 023981          179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT--------------------------DNTITVGTQHILDPLTTLKARVN--  230 (274)
Q Consensus       179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~--------------------------~~~~~vg~~y~~d~~~~~k~kvd--  230 (274)
                      +..+.++..|++++++.+.+++.|..=+.                          ...+++|++|+++++.++|+=+.  
T Consensus       278 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~yd  357 (439)
T 3bs0_A          278 PASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYA  357 (439)
T ss_dssp             CCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEEC
T ss_pred             CcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEcc
Confidence            56899999999999999999998864221                          22467788888777777776542  


Q ss_pred             ----------------CCceEEEEEEEeecCCeEEEEEEE
Q 023981          231 ----------------NAGIASALIQHEWRPKSLFTISGE  254 (274)
Q Consensus       231 ----------------s~g~v~~~~~~~l~~~~~l~ls~~  254 (274)
                                      +...+++....++.+++.+.++.+
T Consensus       358 ~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~  397 (439)
T 3bs0_A          358 QQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS  397 (439)
T ss_dssp             C------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred             cCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence                            112345555556655555555544

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=89.14  E-value=5.5  Score=36.07  Aligned_cols=76  Identities=11%  Similarity=-0.028  Sum_probs=46.9

Q ss_pred             CceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCC---eEEEEEcCCceEEEEEEEeecCCeEEEEEEEE
Q 023981          179 GDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLT---TLKARVNNAGIASALIQHEWRPKSLFTISGEV  255 (274)
Q Consensus       179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~---~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~  255 (274)
                      +..+.++..|++++++.+.+++.|..=+.-..+.+-    .+...   ...-.-.+.+.+.+..+.++++.+++..+...
T Consensus       272 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~----~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~y  347 (427)
T 3pgu_A          272 PEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKAT----STSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAF  347 (427)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEE----EETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             CcEEEEEEEEecCCCEEEEEEEEEEEeccccceEEE----cCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEE
Confidence            468899999999999999999999753322112111    10110   01112234456777777777777777777777


Q ss_pred             ecc
Q 023981          256 DTK  258 (274)
Q Consensus       256 d~~  258 (274)
                      |..
T Consensus       348 d~s  350 (427)
T 3pgu_A          348 DDS  350 (427)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            654

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=85.27  E-value=20  Score=32.08  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=45.7

Q ss_pred             CceEEEEEEEEeCCceeEEEEEEEEeccC-ccEEEEEEEEeeCC-----CCeEEEEEcCCceEEEEEEEeecCCeEEEEE
Q 023981          179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT-DNTITVGTQHILDP-----LTTLKARVNNAGIASALIQHEWRPKSLFTIS  252 (274)
Q Consensus       179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~-~~~~~vg~~y~~d~-----~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls  252 (274)
                      +..+.++..|++++++.+.+++.|..-+. -..+.+  ++.-+.     .....-...+.+.+++..|.++++.++|..+
T Consensus       278 P~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG  355 (441)
T 3bry_A          278 PAQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNV--GFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG  355 (441)
T ss_dssp             CCEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEE--EECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred             ccEEEEeEEEEeCCCEEEEEEEEEEEccchhhheee--eccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence            56899999999999999999999875332 111111  111000     0112222344556666666666666666666


Q ss_pred             EEEec
Q 023981          253 GEVDT  257 (274)
Q Consensus       253 ~~~d~  257 (274)
                      ...|.
T Consensus       356 ~~yd~  360 (441)
T 3bry_A          356 FHYAQ  360 (441)
T ss_dssp             EEEEE
T ss_pred             eeccc
Confidence            66665

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=81.83  E-value=25  Score=30.51  Aligned_cols=116  Identities=9%  Similarity=-0.013  Sum_probs=72.1

Q ss_pred             ceeeeEEeEEcCCeEEEEEEcc---------------CCceEEEEEEEEeCCceeEEEEEEEEec---------------
Q 023981          156 TKCNAGLSFNNADLIASLNLNN---------------KGDSLAASYYHFVNPLTAVGAEVIHSFS---------------  205 (274)
Q Consensus       156 ~~~~~~~~y~~~~~~~~~~~~~---------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~---------------  205 (274)
                      ..|.+++.|..+.+.+.+-...               +...+.+.--..+. .+.+++...+...               
T Consensus       171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g-~~~l~a~Y~~~~~~~~~~~~~~~~~~~~  249 (341)
T 3nsg_A          171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDAN-NVYLAAVYAETRNMSIVENTVTDTVEMA  249 (341)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEET-TEEEEEEEEEESSCCCEECTTTCCEECC
T ss_pred             ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeC-CEEEEEEEEEEEeccccCcccccccccc
Confidence            4578888888877776664321               00122222222333 3566665554321               


Q ss_pred             cCccEEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEeecCCeEEEEEEEEeccc--------ccC
Q 023981          206 TTDNTITVGTQHILDPLTTLKARV-----NN----------AGIASALIQHEWRPKSLFTISGEVDTKA--------IEK  262 (274)
Q Consensus       206 ~~~~~~~vg~~y~~d~~~~~k~kv-----ds----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~~~  262 (274)
                      .+...+.++++|++.+..++++..     +.          .-.+.+.++..|+++..+-+...+|..+        ...
T Consensus       250 ~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~  329 (341)
T 3nsg_A          250 NKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGT  329 (341)
T ss_dssp             SEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTTCS
T ss_pred             eEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCccccccccCc
Confidence            123568999999997766665532     11          2257889999999999999888887643        123


Q ss_pred             CceeEEEEEE
Q 023981          263 SAKFGLALAL  272 (274)
Q Consensus       263 ~~K~G~~l~~  272 (274)
                      +-.+++||..
T Consensus       330 dd~~~vGlry  339 (341)
T 3nsg_A          330 DDQAAVGITY  339 (341)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            5689999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1i78a_	297	Outer membrane protease OMPT {Escherichia coli [Ta	87.38
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	81.85

>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: OMPT-like
family: Outer membrane protease OMPT
domain: Outer membrane protease OMPT
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=6.2  Score=31.91  Aligned_cols=185  Identities=11%  Similarity=0.097  Sum_probs=96.9

Q ss_pred             EEEEEcCCCceEEEEEEccCCCCcEEEEEEE--ccCCCCceEEEEEee---------cceeeeEEEeCCCCCeEEEEEE-
Q 023981           67 TDLKVDTASNLFTTITVDEPAPGLKTILSFK--VPDQRSGKVELQYLH---------DYAGISTSVGLTANPIVNFSAV-  134 (274)
Q Consensus        67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~v~l~~~p~~~~s~v-  134 (274)
                      |.-++++..-|+++++.+ +.+.|.+++..+  ++...+....-+|..         ..++-++.++--..-+++...- 
T Consensus        42 LdW~~~n~~~i~~~~~~~-~~~~l~l~~~g~~~~~~~~G~M~DyDW~~~~~~~~wt~~S~h~~t~l~~a~~~dLn~~~~l  120 (297)
T d1i78a_          42 LDWKFNNAAIIKGAINWD-LMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWL  120 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEC-CSSSEEEEEEEEEESSCEEEEEEEEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             eeeecCCceEEEEEEEee-ccCCeEEEEEEEEEccCCCCceeccccCCCccCCCCcccccCCCCCcchhheeeeccceEE
Confidence            445555667788899998 999999877765  332111112223321         1122344443111112332222 


Q ss_pred             EecCccEEeEEEEEECCCCccceeeeEEeEEcCCe-EE-EEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEE
Q 023981          135 IGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADL-IA-SLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTIT  212 (274)
Q Consensus       135 ~~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~-~~-~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~  212 (274)
                      +..++..+|+-+.|+....+.+.|-..-.|..... -- ..++ +++ ....+|-|+.. -.-+|...++....  -.+.
T Consensus       121 l~~~~y~lg~~~Gyqy~~~~wtAyGGsy~y~~~~~~r~~~g~~-p~~-~~~ItY~q~~~-~~yiGL~g~y~~~~--~~f~  195 (297)
T d1i78a_         121 LNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSF-PNG-ERAIGYKQRFK-MPYIGLTGSYRYED--FELG  195 (297)
T ss_dssp             EECSSEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBC-CTT-CSEEEEEEEEE-EEEEEEEEEEEETT--EEEE
T ss_pred             EecCCeEEEEEeeeEEeecceEecCccEEcCCCCCcccccccc-CCC-cceEEEEeEEe-EEEEeEEEEEEecc--eEEE
Confidence            25777888888888765433333322112222110 00 1111 122 45678888875 34566666666533  2344


Q ss_pred             EEEEE------------ee-CCCCeEEEEEcCCc--eEEEEEEEeecCCeEEEEEEEEec
Q 023981          213 VGTQH------------IL-DPLTTLKARVNNAG--IASALIQHEWRPKSLFTISGEVDT  257 (274)
Q Consensus       213 vg~~y------------~~-d~~~~~k~kvds~g--~v~~~~~~~l~~~~~l~ls~~~d~  257 (274)
                      ...+|            -+ +...+++-+.+...  .|++....++.|+.+|.+++..+.
T Consensus       196 ~~l~ys~wv~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y~vt~~~s~~ve~~y~~  255 (297)
T d1i78a_         196 GTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR  255 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEeeceeeecCCCccceeccCCcccccccCCccEEEEEEEEEEEECCCEEEEEEEEEEE
Confidence            44444            22 22355666666422  256667889999999999998775

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=81.85  E-value=12  Score=30.50  Aligned_cols=75  Identities=16%  Similarity=0.073  Sum_probs=53.3

Q ss_pred             ceEEEEEEEEeCCceeEEEEEEEEec-----------------------cCccEEEEEEEEeeCCCCeEEEEEcC-----
Q 023981          180 DSLAASYYHFVNPLTAVGAEVIHSFS-----------------------TTDNTITVGTQHILDPLTTLKARVNN-----  231 (274)
Q Consensus       180 ~~~~~sy~~kv~~~~~~g~e~~~~~~-----------------------~~~~~~~vg~~y~~d~~~~~k~kvds-----  231 (274)
                      ..+.+++-+++.+++.+.+++.|..-                       .....+++|++|++.+...+|+-+.-     
T Consensus       273 ~~~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~~~  352 (427)
T d1t16a_         273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPV  352 (427)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECCSS
T ss_pred             cEEEEEEEEEeccceeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccCCC
Confidence            57778888888888888888887531                       23467888888888777788877552     


Q ss_pred             -------------CceEEEEEEEeecCCeEEEEEEE
Q 023981          232 -------------AGIASALIQHEWRPKSLFTISGE  254 (274)
Q Consensus       232 -------------~g~v~~~~~~~l~~~~~l~ls~~  254 (274)
                                   .-.+++....++++.+.+.++.+
T Consensus       353 ~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~  388 (427)
T d1t16a_         353 PAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVS  388 (427)
T ss_dssp             CTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEE
T ss_pred             CcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEE
Confidence                         22366777777777777666655