Citrus Sinensis ID: 023988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccEEEEEEccccccccEEccccEEEcccccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccccccccccccccHcEEEEEEEEcccccHHHcHHHHHHccccccHcHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEcccccccccc
Coil and Loop (DISEMBL)
MGSSQAAVSFLTNIARAAFGLGAAATVLNsslytvdggeravLFDRFRgvidetigegthflipwlqkpfifdirtrphtfssvsgtkdlqmVNLTLrvlsrpevsrlpYIFQHLgleydekvlpsIGNEVLKAVVAQFNadqllterphvSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLArsphvaylpggknsnmllalnpaltggr
Flexible Loop (DISEMBL)
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTfssvsgtkdlqmvNLTLrvlsrpevsRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNadqllterphvSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQliseatskfglglIELRRIEASREIAATLArsphvaylpggknsnmllalnpaltggr
Low Complexity Region (SEG)
MGSSQAAVSFLTNIaraafglgaaaTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRaveqkqvaqqeaeRSKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
Disordered region (IsUnstruct)
*******VSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA*****************************LISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPG******************
Disordered Region (DISOPRED)
*************IARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS**S*TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERS**V**********************LGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLL***P******
Disordered Region (DISEMBL)
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA*************SKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
Disordered Region (DISPRO)
****QAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSN***A*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
O04331	277	Prohibitin-3, mitochondri	yes	no	0.967	0.956	0.848	1e-134
Q9LK25	279	Prohibitin-4, mitochondri	no	no	0.970	0.953	0.824	1e-129
Q9P7H3	282	Prohibitin-1 OS=Schizosac	yes	no	0.941	0.914	0.528	1e-80
Q54GI9	271	Prohibitin-1, mitochondri	yes	no	0.934	0.944	0.529	2e-80
Q9LY99	249	Prohibitin-5, mitochondri	no	no	0.773	0.851	0.601	3e-80
P40961	287	Prohibitin-1 OS=Saccharom	yes	no	0.883	0.843	0.553	2e-79
P84173	272	Prohibitin OS=Gallus gall	yes	no	0.923	0.930	0.526	4e-77
P35232	272	Prohibitin OS=Homo sapien	yes	no	0.923	0.930	0.522	5e-76
Q3T165	272	Prohibitin OS=Bos taurus	yes	no	0.923	0.930	0.522	5e-76
P67779	272	Prohibitin OS=Rattus norv	yes	no	0.923	0.930	0.518	9e-76

>sp|O04331|PHB3_ARATH Prohibitin-3, mitochondrial OS=Arabidopsis thaliana GN=PHB3 PE=1 SV=1

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/278 (84%), Positives = 256/278 (92%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS QAAVSFL+N+A+AAFGLG AATVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct: 1   MGSQQAAVSFLSNLAKAAFGLGTAATVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct: 61  FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERR           AAQLIS+AT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASREIA+TLARSP+VAYLPGG+  +ML ALN
Sbjct: 241 IELRRIEASREIASTLARSPNVAYLPGGQ--SMLFALN 276

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins (By similarity). Necessary for mitochondrial and cell metabolism and biogenesis. Required to regulate the ethylene-mediated signaling; involved in growth maintainance in the presence of ethylene. Functions in nitric oxide (NO)-mediated responses and in hydrogen peroxide-induced NO accumulation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK25|PHB4_ARATH Prohibitin-4, mitochondrial OS=Arabidopsis thaliana GN=PHB4 PE=1 SV=1

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/279 (82%), Positives = 250/279 (89%), Gaps = 13/279 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS Q A+SFLTN+A+AAFGLG AAT LNSSLYTVDGGERAVLFDRFRGV+D+T+GEGTH
Sbjct: 1   MGSQQVAISFLTNLAKAAFGLGVAATALNSSLYTVDGGERAVLFDRFRGVLDQTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIP+LQ P I+DIRT+PHTFSS SGTKDLQMVNLTLRVL RPEVSRLPYIFQ LGLEYD
Sbjct: 61  FLIPYLQTPHIYDIRTKPHTFSSKSGTKDLQMVNLTLRVLFRPEVSRLPYIFQTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVA FNADQLLTERP VSALVR++LIKRAR+FNI LDD+AITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVANFNADQLLTERPQVSALVRDALIKRAREFNIELDDIAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           GAEFSRAVE KQVAQQEAERSKFVVMKADQERR           AAQLIS+AT+K G+GL
Sbjct: 181 GAEFSRAVEAKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNP 268
           IELRRIEASRE+AATLARSP+VAYLPGG+  +ML  LNP
Sbjct: 241 IELRRIEASREVAATLARSPNVAYLPGGQ--SMLFNLNP 277

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P7H3|PHB1_SCHPO Prohibitin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=phb1 PE=3 SV=1

 Score =  299 bits (766), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/278 (52%), Positives = 204/278 (73%), Gaps = 20/278 (7%)

Query: 11  LTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPF 70
           L  +AR A  +G   T+L SS+Y V GG+RAVLFDR  GV  + + EGTHFLIPWLQK  
Sbjct: 5   LERVARYAIPIGIGFTLLQSSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAI 64

Query: 71  IFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNE 130
           ++D+RTRP   ++ +G+KDLQMV+LTLRVL RPEV  LP I+Q+LGL+YDE+VLPSIGNE
Sbjct: 65  VYDVRTRPRNIATTTGSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNE 124

Query: 131 VLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ 190
           +LK+VVAQF+A +L+T+R  VSA +R+ L++RA +F I L+DV+ITH+++G EF++AVE+
Sbjct: 125 ILKSVVAQFDAAELITQREVVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVER 184

Query: 191 KQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGLIELRRIEASR 239
           KQ+AQQEAER++F+V +++QER+           AA ++S+A  K G  LI++RR+E S+
Sbjct: 185 KQIAQQEAERARFLVEQSEQERQANVIRAEGEAEAADIVSKALDKAGGALIQIRRLETSK 244

Query: 240 EIAATLA-RSPHVAYLPGGKNSN--------MLLALNP 268
           E+A  LA +   V YLP G  SN        +LL +NP
Sbjct: 245 EVATALANKGAQVTYLPFGAGSNAQSSSGSGLLLNVNP 282

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins. Has an antiproliferative activity. Regulates replicative life span.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54GI9|PHB1_DICDI Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1

 Score =  299 bits (765), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/270 (52%), Positives = 200/270 (74%), Gaps = 14/270 (5%)

Query: 9   SFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQK 68
           SFL  +   A  +G   ++  SS+YTVDGG+RAV+FDR  GV ++++GEGTHF++PWLQK
Sbjct: 3   SFLNKLIPLALTVGTGLSLAQSSMYTVDGGQRAVIFDRISGVKEKSVGEGTHFIMPWLQK 62

Query: 69  PFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIG 128
           P IFDIR+ P    S +G+KDLQ V++T+RVL RP+V  LP IF  LGL+YDE++LPS+G
Sbjct: 63  PIIFDIRSSPRNIKSDTGSKDLQTVSVTVRVLFRPDVEHLPSIFSKLGLDYDERILPSLG 122

Query: 129 NEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAV 188
           NEVLK+VVAQ++A +L+T+R  VS  +RESL+KRA++FN++LDDV+ITHLS+  +F+ A+
Sbjct: 123 NEVLKSVVAQYDATELITQREVVSKEIRESLMKRAKEFNLLLDDVSITHLSFSQDFTNAI 182

Query: 189 EQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGLIELRRIEA 237
           E KQVAQQEAERSK++VMK +QE++           AA+LI +A        IELRRIEA
Sbjct: 183 EHKQVAQQEAERSKYIVMKNEQEKKANIIRAEGEAEAAKLIGQAMGN-SAAFIELRRIEA 241

Query: 238 SREIAATLARSPHVAYLPGGKNSNMLLALN 267
            ++I  +L++S  V Y+P   + N+L+ LN
Sbjct: 242 YKDITESLSKSKQVTYVP--TSGNLLMNLN 269

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LY99|PHB5_ARATH Prohibitin-5, mitochondrial OS=Arabidopsis thaliana GN=PHB5 PE=1 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/251 (60%), Positives = 189/251 (75%), Gaps = 39/251 (15%)

Query: 28  LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGT 87
           + S+++TVDGG+RAV+F RF G+++E +GEGTH  IPW+QKP+IFDIRT+P+  ++ SGT
Sbjct: 20  VRSTMFTVDGGQRAVMFHRFEGILEEPVGEGTHRKIPWVQKPYIFDIRTKPYKINTDSGT 79

Query: 88  KDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE 147
           KDLQMVNLTLRV+ RP+V                          +KAVVAQFNAD+LLTE
Sbjct: 80  KDLQMVNLTLRVMFRPDV--------------------------VKAVVAQFNADELLTE 113

Query: 148 RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMK 207
           RP VSAL+RE+LIKRA++FNIVLDDV+IT LSYG EFS AVE+KQVAQQEAERSKFVV K
Sbjct: 114 RPQVSALIRETLIKRAKEFNIVLDDVSITGLSYGKEFSLAVERKQVAQQEAERSKFVVAK 173

Query: 208 ADQERR-----------AAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPG 256
           ADQERR           AA++IS+AT+  G+GLI+LRR+EA+RE+A TL+ SP+V YLP 
Sbjct: 174 ADQERRAAVIRAEGESEAARVISKATAGAGMGLIKLRRVEAAREVAITLSNSPNVVYLPS 233

Query: 257 GKNSNMLLALN 267
           G   NML A+N
Sbjct: 234 G--GNMLFAMN 242

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P40961|PHB1_YEAST Prohibitin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHB1 PE=1 SV=2

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/253 (55%), Positives = 194/253 (76%), Gaps = 11/253 (4%)

Query: 14  IARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFD 73
           I + A  +G  A+ +  S+Y V GG R V+FDR  GV  + +GEGTHFL+PWLQK  I+D
Sbjct: 11  ITKVALPIGIIASGIQYSMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYD 70

Query: 74  IRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLK 133
           +RT+P + ++ +GTKDLQMV+LTLRVL RPEV +LP I+Q+LGL+YDE+VLPSIGNEVLK
Sbjct: 71  VRTKPKSIATNTGTKDLQMVSLTLRVLHRPEVLQLPAIYQNLGLDYDERVLPSIGNEVLK 130

Query: 134 AVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQV 193
           ++VAQF+A +L+T+R  +S  +R+ L  RA +F I L+DV+ITH+++G EF++AVEQKQ+
Sbjct: 131 SIVAQFDAAELITQREIISQKIRKELSTRANEFGIKLEDVSITHMTFGPEFTKAVEQKQI 190

Query: 194 AQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGLIELRRIEASREIA 242
           AQQ+AER+KF+V KA+QER+A           A+ IS+A +K G GL+ +RR+EAS++IA
Sbjct: 191 AQQDAERAKFLVEKAEQERQASVIRAEGEAESAEFISKALAKVGDGLLLIRRLEASKDIA 250

Query: 243 ATLARSPHVAYLP 255
            TLA S +V YLP
Sbjct: 251 QTLANSSNVVYLP 263

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins. Has an antiproliferative activity. Regulates replicative life span.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P84173|PHB_CHICK Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 190/264 (71%), Gaps = 11/264 (4%)

Query: 7   AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWL 66
           A     +I +   GL  A  V+NS+LY VD G RAV+FDRFRGV D  +GEGTHFLIPW+
Sbjct: 2   AAKVFESIGKFGLGLAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWV 61

Query: 67  QKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPS 126
           QKP IFD R+RP     ++G+KDLQ VN+TLR+L RP  ++LP IF  +G +YDE+VLPS
Sbjct: 62  QKPIIFDCRSRPRNIPVITGSKDLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPS 121

Query: 127 IGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSR 186
           I  E+LK+VVA+F+A +L+T+R  VS  V E L +RA  F ++LDDV++THL++G EF+ 
Sbjct: 122 ITTEILKSVVARFDAGELITQRELVSRQVSEDLTERAATFGLILDDVSLTHLTFGKEFTE 181

Query: 187 AVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATSK-----------FGLGLIELRRI 235
           AVE KQVAQQEAER++F+V KA+Q+++AA + +E  SK            G GLIELR++
Sbjct: 182 AVEMKQVAQQEAERARFIVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRKL 241

Query: 236 EASREIAATLARSPHVAYLPGGKN 259
           EA+ +IA  L+RS ++ YLP G++
Sbjct: 242 EAAEDIAYQLSRSRNITYLPSGQS 265

Prohibitin inhibits DNA synthesis. It has a role in regulating proliferation. As yet it is unclear if the protein or the mRNA exhibits this effect. May play a role in regulating mitochondrial respiration activity and in aging.

Gallus gallus (taxid: 9031)

>sp|P35232|PHB_HUMAN Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1

 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 190/264 (71%), Gaps = 11/264 (4%)

Query: 7   AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWL 66
           A     +I +    L  A  V+NS+LY VD G RAV+FDRFRGV D  +GEGTHFLIPW+
Sbjct: 2   AAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWV 61

Query: 67  QKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPS 126
           QKP IFD R+RP     ++G+KDLQ VN+TLR+L RP  S+LP IF  +G +YDE+VLPS
Sbjct: 62  QKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPS 121

Query: 127 IGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSR 186
           I  E+LK+VVA+F+A +L+T+R  VS  V + L +RA  F ++LDDV++THL++G EF+ 
Sbjct: 122 ITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTE 181

Query: 187 AVEQKQVAQQEAERSKFVVMKADQER-----------RAAQLISEATSKFGLGLIELRRI 235
           AVE KQVAQQEAER++FVV KA+Q++           +AA+LI+ + +  G GLIELR++
Sbjct: 182 AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKL 241

Query: 236 EASREIAATLARSPHVAYLPGGKN 259
           EA+ +IA  L+RS ++ YLP G++
Sbjct: 242 EAAEDIAYQLSRSRNITYLPAGQS 265

Prohibitin inhibits DNA synthesis. It has a role in regulating proliferation. As yet it is unclear if the protein or the mRNA exhibits this effect. May play a role in regulating mitochondrial respiration activity and in aging.

Homo sapiens (taxid: 9606)

>sp|Q3T165|PHB_BOVIN Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1

 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 190/264 (71%), Gaps = 11/264 (4%)

Query: 7   AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWL 66
           A     +I +    L  A  V+NS+LY VD G RAV+FDRFRGV D  +GEGTHFLIPW+
Sbjct: 2   AAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWV 61

Query: 67  QKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPS 126
           QKP IFD R+RP     ++G+KDLQ VN+TLR+L RP  S+LP IF  +G +YDE+VLPS
Sbjct: 62  QKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPS 121

Query: 127 IGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSR 186
           I  E+LK+VVA+F+A +L+T+R  VS  V + L +RA  F ++LDDV++THL++G EF+ 
Sbjct: 122 ITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTE 181

Query: 187 AVEQKQVAQQEAERSKFVVMKADQER-----------RAAQLISEATSKFGLGLIELRRI 235
           AVE KQVAQQEAER++FVV KA+Q++           +AA+LI+ + +  G GLIELR++
Sbjct: 182 AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKL 241

Query: 236 EASREIAATLARSPHVAYLPGGKN 259
           EA+ +IA  L+RS ++ YLP G++
Sbjct: 242 EAAEDIAYQLSRSRNITYLPAGQS 265

Prohibitin inhibits DNA synthesis. It has a role in regulating proliferation. As yet it is unclear if the protein or the mRNA exhibits this effect. May play a role in regulating mitochondrial respiration activity and in aging.

Bos taurus (taxid: 9913)

>sp|P67779|PHB_RAT Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1

 Score =  283 bits (724), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 137/264 (51%), Positives = 190/264 (71%), Gaps = 11/264 (4%)

Query: 7   AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWL 66
           A     +I +    L  A  V+NS+LY VD G RAV+FDRFRGV D  +GEGTHFLIPW+
Sbjct: 2   AAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWV 61

Query: 67  QKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPS 126
           QKP IFD R+RP     ++G+KDLQ VN+TLR+L RP  S+LP I+  +G +YDE+VLPS
Sbjct: 62  QKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPS 121

Query: 127 IGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSR 186
           I  E+LK+VVA+F+A +L+T+R  VS  V + L +RA  F ++LDDV++THL++G EF+ 
Sbjct: 122 ITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTE 181

Query: 187 AVEQKQVAQQEAERSKFVVMKADQER-----------RAAQLISEATSKFGLGLIELRRI 235
           AVE KQVAQQEAER++FVV KA+Q++           +AA+LI+ + +  G GLIELR++
Sbjct: 182 AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKL 241

Query: 236 EASREIAATLARSPHVAYLPGGKN 259
           EA+ +IA  L+RS ++ YLP G++
Sbjct: 242 EAAEDIAYQLSRSRNITYLPAGQS 265

Prohibitin inhibits DNA synthesis. It has a role in regulating proliferation. As yet it is unclear if the protein or the mRNA exhibits this effect. May play a role in regulating mitochondrial respiration activity and in aging.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255537009	279	prohibitin, putative [Ricinus communis]	0.974	0.956	0.878	1e-139
225452186	283	PREDICTED: prohibitin-1, mitochondrial [	0.992	0.961	0.849	1e-137
224140851	279	predicted protein [Populus trichocarpa]	0.967	0.949	0.877	1e-136
224060205	276	predicted protein [Populus trichocarpa]	0.967	0.960	0.874	1e-135
449440668	279	PREDICTED: prohibitin-1, mitochondrial-l	0.974	0.956	0.85	1e-133
338815361	279	RSI1 [Solanum tuberosum]	0.970	0.953	0.845	1e-133
15237488	277	prohibitin 3 [Arabidopsis thaliana] gi|7	0.967	0.956	0.848	1e-132
71370257	279	PHB1 [Nicotiana benthamiana]	0.967	0.949	0.845	1e-132
297801508	277	ATPHB3 [Arabidopsis lyrata subsp. lyrata	0.967	0.956	0.845	1e-131
1946329	279	prohibitin [Nicotiana tabacum]	0.967	0.949	0.841	1e-131

>gi|255537009|ref|XP_002509571.1| prohibitin, putative [Ricinus communis] gi|223549470|gb|EEF50958.1| prohibitin, putative [Ricinus communis]

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/280 (87%), Positives = 261/280 (93%), Gaps = 13/280 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS+QAAVSFLTN+ARAAFGLGAAAT LN+SLYTVDGG+RAVLFDRFRGVID TIGEGTH
Sbjct: 1   MGSNQAAVSFLTNLARAAFGLGAAATALNASLYTVDGGQRAVLFDRFRGVIDTTIGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRP+V+RLPYIFQHLGLEYD
Sbjct: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPDVTRLPYIFQHLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKF+VMKADQERR           AA LIS ATSK G+GL
Sbjct: 181 GMEFSRAVEQKQVAQQEAERSKFIVMKADQERRAAIIRAEGESEAAHLISNATSKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPA 269
           IELRRIEASRE+A+TLA+SP+VAYLPGG  SNML+ALNP+
Sbjct: 241 IELRRIEASREVASTLAKSPNVAYLPGG--SNMLMALNPS 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452186|ref|XP_002265881.1| PREDICTED: prohibitin-1, mitochondrial [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/285 (84%), Positives = 265/285 (92%), Gaps = 13/285 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFLTN+ARAAFGLGAAA+VLN+SLYTVDGG+RAVLFDRFRGVID+TIGEGTH
Sbjct: 1   MGSSQAAVSFLTNLARAAFGLGAAASVLNASLYTVDGGQRAVLFDRFRGVIDDTIGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FL+PWLQKP+IFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIF+ LGLEYD
Sbjct: 61  FLVPWLQKPYIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFKTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLT+RPHVSALVR+SLI+RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTDRPHVSALVRDSLIRRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGL 229
           GAEFS+AVEQKQVAQQEAERSKFVV KA+QERRA           A+LIS+AT+  G+GL
Sbjct: 181 GAEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATAAAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR 274
           IELRRIEASREIAATLA++P+VAYLPGG  +NMLL LNP + GGR
Sbjct: 241 IELRRIEASREIAATLAKTPNVAYLPGG--NNMLLGLNPTIAGGR 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140851|ref|XP_002323792.1| predicted protein [Populus trichocarpa] gi|222866794|gb|EEF03925.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/278 (87%), Positives = 259/278 (93%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFL N+ARAAFG+GAAATVLNSSLYTVDGG+RAVLFDRFRGVID TIGEGTH
Sbjct: 1   MGSSQAAVSFLNNLARAAFGIGAAATVLNSSLYTVDGGQRAVLFDRFRGVIDTTIGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLP+IFQ LGLEYD
Sbjct: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPHIFQRLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSA+VR+SLIKRARDF+IV+DDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSAMVRDSLIKRARDFDIVMDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERR           AA+LISEAT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESDAAKLISEATTKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASREIA+TLA+S +VAYLPGG  +NMLLALN
Sbjct: 241 IELRRIEASREIASTLAKSSNVAYLPGG--NNMLLALN 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060205|ref|XP_002300084.1| predicted protein [Populus trichocarpa] gi|222847342|gb|EEE84889.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/278 (87%), Positives = 259/278 (93%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFL N+ARAAFGLGAAAT+LNSSLYTVDGG+RAVLFDRFRGVID +IGEGTH
Sbjct: 1   MGSSQAAVSFLNNVARAAFGLGAAATILNSSLYTVDGGQRAVLFDRFRGVIDTSIGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLP+IFQ LGLEYD
Sbjct: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPHIFQRLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERP VSALVR++LIKRARDF+IV+DDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRDALIKRARDFDIVMDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERR           AA+LISEAT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESDAAKLISEATTKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASREIA+TLA+SP+VAYLPGG  +NMLLALN
Sbjct: 241 IELRRIEASREIASTLAKSPNVAYLPGG--NNMLLALN 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440668|ref|XP_004138106.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 1 [Cucumis sativus] gi|449440670|ref|XP_004138107.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 2 [Cucumis sativus] gi|449477417|ref|XP_004155017.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 1 [Cucumis sativus] gi|449477420|ref|XP_004155018.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/280 (85%), Positives = 259/280 (92%), Gaps = 13/280 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFLTN+ARAAFGLGAAA+VLN+SLYTVDGGERAVLFDRFRGVIDET+GEGTH
Sbjct: 1   MGSSQAAVSFLTNVARAAFGLGAAASVLNASLYTVDGGERAVLFDRFRGVIDETVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNL+LRVLSRPE+SRL  IF+ LGLEYD
Sbjct: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLSLRVLSRPEISRLSDIFKTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESL++RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLVRRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGL 229
             EFS+AVEQKQVAQQEAERSKFVV KA+QERRA           A+LIS+ATS  G+GL
Sbjct: 181 SPEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATSAAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPA 269
           IELRRIEASREIA+TL++SP+VAYLPGG+  NMLLALNP+
Sbjct: 241 IELRRIEASREIASTLSKSPNVAYLPGGQ--NMLLALNPS 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338815361|gb|AEJ08743.1| RSI1 [Solanum tuberosum]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/279 (84%), Positives = 259/279 (92%), Gaps = 13/279 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS+QAAVSFLTNIARAAFGLG  ATVLNSSLYTVDGG+RAVLFDRFRGVID+T+GEGTH
Sbjct: 1   MGSNQAAVSFLTNIARAAFGLGIGATVLNSSLYTVDGGQRAVLFDRFRGVIDDTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FL+PWLQKPFIFDIRTRPHTFSSVSGTKDLQMV+LTLRVLSRPEVSRLPYIF++LGLEYD
Sbjct: 61  FLVPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVHLTLRVLSRPEVSRLPYIFKNLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEV+KAVVAQFNADQLLTERP VSALVRESLI+RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVMKAVVAQFNADQLLTERPQVSALVRESLIRRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGL 229
           GAEFS+AVEQKQVAQQEAERSKFVVMKA+QERRA           A+LIS+AT+  G+GL
Sbjct: 181 GAEFSKAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESESAKLISDATAAAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNP 268
           IELRRIEASRE+A+TLA++P+VAYLP  K  NMLLAL+P
Sbjct: 241 IELRRIEASREVASTLAKTPNVAYLP--KQGNMLLALSP 277

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237488|ref|NP_198893.1| prohibitin 3 [Arabidopsis thaliana] gi|75096997|sp|O04331.1|PHB3_ARATH RecName: Full=Prohibitin-3, mitochondrial; Short=Atphb3; AltName: Full=Protein ENHANCED ETHYLENE RESPONSE 3 gi|1946331|gb|AAC49691.1| prohibitin [Arabidopsis thaliana] gi|4097692|gb|AAD00157.1| prohibitin 3 [Arabidopsis thaliana] gi|9758371|dbj|BAB08838.1| prohibitin [Arabidopsis thaliana] gi|15450838|gb|AAK96690.1| prohibitin [Arabidopsis thaliana] gi|21387093|gb|AAM47950.1| prohibitin [Arabidopsis thaliana] gi|21593231|gb|AAM65180.1| prohibitin [Arabidopsis thaliana] gi|332007209|gb|AED94592.1| prohibitin 3 [Arabidopsis thaliana]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/278 (84%), Positives = 256/278 (92%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS QAAVSFL+N+A+AAFGLG AATVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct: 1   MGSQQAAVSFLSNLAKAAFGLGTAATVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct: 61  FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERR           AAQLIS+AT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASREIA+TLARSP+VAYLPGG+  +ML ALN
Sbjct: 241 IELRRIEASREIASTLARSPNVAYLPGGQ--SMLFALN 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71370257|gb|AAZ30376.1| PHB1 [Nicotiana benthamiana]

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/278 (84%), Positives = 256/278 (92%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFLTN+ARAAFGLG +ATVLNSSLYTVDGG+RAVLFDRFRGVID+T+GEGTH
Sbjct: 1   MGSSQAAVSFLTNVARAAFGLGISATVLNSSLYTVDGGQRAVLFDRFRGVIDDTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FL+PWLQKPFIFDIRTRPHTFSSVSGTKDLQMV+LTLRVLSRPEVSRLP IF+ LGLEYD
Sbjct: 61  FLVPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVHLTLRVLSRPEVSRLPAIFKTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERP VSALVRESLI+RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRESLIRRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGL 229
           GAEFS+AVEQKQVAQQEAERSKFVVMKA+QERRA           A+LIS+AT+  G+GL
Sbjct: 181 GAEFSKAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESESAKLISDATAAAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASRE+AAT+A++P+VAYLP  K  NMLL LN
Sbjct: 241 IELRRIEASREVAATMAKTPNVAYLP--KQGNMLLGLN 276

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801508|ref|XP_002868638.1| ATPHB3 [Arabidopsis lyrata subsp. lyrata] gi|297314474|gb|EFH44897.1| ATPHB3 [Arabidopsis lyrata subsp. lyrata]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/278 (84%), Positives = 255/278 (91%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS QAAVSFL+N+A+AAFGLG A TVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct: 1   MGSQQAAVSFLSNLAKAAFGLGTAVTVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct: 61  FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERR-----------AAQLISEATSKFGLGL 229
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERR           AAQLIS+AT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASREIA+TLARSP+VAYLPGG+  +ML ALN
Sbjct: 241 IELRRIEASREIASTLARSPNVAYLPGGQ--SMLFALN 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1946329|gb|AAC49690.1| prohibitin [Nicotiana tabacum]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/278 (84%), Positives = 256/278 (92%), Gaps = 13/278 (4%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGSSQAAVSFLTN+ARAAFGLG +ATVLNSSLYTVDGG+RAVLFDRFRGVID+T+GEGTH
Sbjct: 1   MGSSQAAVSFLTNVARAAFGLGISATVLNSSLYTVDGGQRAVLFDRFRGVIDDTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FL+PWLQKPFIFDIRTRPHTFSSVSGTKDLQMV+LTLRVLSRPEV+RLP IF+ LGLEYD
Sbjct: 61  FLVPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVHLTLRVLSRPEVARLPAIFKTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERP VSALVRESLI+RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRESLIRRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRA-----------AQLISEATSKFGLGL 229
           GAEFS+AVEQKQVAQQEAERSKFVVMKA+QERRA           A+LIS+AT+  G+GL
Sbjct: 181 GAEFSKAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESESAKLISDATAAAGMGL 240

Query: 230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
           IELRRIEASRE+AAT+A++P+VAYLP  K  NMLL LN
Sbjct: 241 IELRRIEASREVAATMAKTPNVAYLP--KQGNMLLGLN 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2154810	277	PHB3 "prohibitin 3" [Arabidops	0.967	0.956	0.769	1.1e-103
TAIR|locus:2086538	279	PHB4 "prohibitin 4" [Arabidops	0.970	0.953	0.749	1.8e-101
ASPGD|ASPL0000058983	280	AN0686 [Emericella nidulans (t	0.930	0.910	0.518	8.2e-67
UNIPROTKB|G4N4M8	275	MGG_06004 "Prohibitin-1" [Magn	0.857	0.854	0.550	1.7e-66
TAIR|locus:2145718	249	PHB5 "prohibitin 5" [Arabidops	0.496	0.546	0.604	2.9e-66
CGD|CAL0000271	321	PHB1 [Candida albicans (taxid:	0.832	0.710	0.527	5.4e-63
CGD|CAL0004834	321	orf19.357 [Candida albicans (t	0.832	0.710	0.527	5.4e-63
DICTYBASE|DDB_G0290123	271	phbA "Prohibitin" [Dictyosteli	0.937	0.948	0.486	5.4e-63
UNIPROTKB|Q5AEB1	321	PHB12 "Prohibitin-like protein	0.832	0.710	0.527	5.4e-63
POMBASE|SPAC1782.06c	282	phb1 "prohibitin Phb1 (predict	0.861	0.836	0.512	1.8e-62

TAIR|locus:2154810 PHB3 "prohibitin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 214/278 (76%), Positives = 233/278 (83%)

Query:     1 MGSSQAAVSFLTNIXXXXXXXXXXXTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
             MGS QAAVSFL+N+           TVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct:     1 MGSQQAAVSFLSNLAKAAFGLGTAATVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query:    61 FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
             FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct:    61 FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query:   121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
             EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct:   121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query:   181 GAEFSRXXXXXXXXXXXXXRSKFVVMKADQERRAA-----------QLISEATSKFGLGL 229
             G EFSR             RSKFVVMKADQERRAA           QLIS+AT+K G+GL
Sbjct:   181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query:   230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 267
             IELRRIEASREIA+TLARSP+VAYLPGG++  ML ALN
Sbjct:   241 IELRRIEASREIASTLARSPNVAYLPGGQS--MLFALN 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0048527 "lateral root development" evidence=IMP

GO:0071731 "response to nitric oxide" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2086538 PHB4 "prohibitin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 209/279 (74%), Positives = 228/279 (81%)

Query:     1 MGSSQAAVSFLTNIXXXXXXXXXXXTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
             MGS Q A+SFLTN+           T LNSSLYTVDGGERAVLFDRFRGV+D+T+GEGTH
Sbjct:     1 MGSQQVAISFLTNLAKAAFGLGVAATALNSSLYTVDGGERAVLFDRFRGVLDQTVGEGTH 60

Query:    61 FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
             FLIP+LQ P I+DIRT+PHTFSS SGTKDLQMVNLTLRVL RPEVSRLPYIFQ LGLEYD
Sbjct:    61 FLIPYLQTPHIYDIRTKPHTFSSKSGTKDLQMVNLTLRVLFRPEVSRLPYIFQTLGLEYD 120

Query:   121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
             EKVLPSIGNEVLKAVVA FNADQLLTERP VSALVR++LIKRAR+FNI LDD+AITHLSY
Sbjct:   121 EKVLPSIGNEVLKAVVANFNADQLLTERPQVSALVRDALIKRAREFNIELDDIAITHLSY 180

Query:   181 GAEFSRXXXXXXXXXXXXXRSKFVVMKADQERRAA-----------QLISEATSKFGLGL 229
             GAEFSR             RSKFVVMKADQERRAA           QLIS+AT+K G+GL
Sbjct:   181 GAEFSRAVEAKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query:   230 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNP 268
             IELRRIEASRE+AATLARSP+VAYLPGG++  ML  LNP
Sbjct:   241 IELRRIEASREVAATLARSPNVAYLPGGQS--MLFNLNP 277

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

ASPGD|ASPL0000058983 AN0686 [Emericella nidulans (taxid:162425)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 138/266 (51%), Positives = 185/266 (69%)

Query:     7 AVSFLTNIXXXXXXXXXXXTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWL 66
             A + L N+             +N+SLY V GG RAV+FDR  GV ++ + EGTHFLIPWL
Sbjct:     2 AANGLYNLQRLAIPIGLGAMAVNASLYDVKGGTRAVIFDRLSGVQEQVVNEGTHFLIPWL 61

Query:    67 QKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPS 126
             QK  I+D+RT+P   S+ +G+KDLQMV+LTLRVL RPEV +LP I+Q  G +YDE+VLPS
Sbjct:    62 QKAVIYDVRTKPRNISTTTGSKDLQMVSLTLRVLHRPEVPKLPAIYQSYGTDYDERVLPS 121

Query:   127 IGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSR 186
             IGNEVLKA+VAQF+A +L+T+R  VS  +R  L+KRA  FNI L+DV+ITH+++G EF+R
Sbjct:   122 IGNEVLKAIVAQFDAAELITQREAVSNRIRTDLMKRASQFNIALEDVSITHMTFGKEFTR 181

Query:   187 XXXXXXXXXXXXXRSKFVVMKADQERRA-----------AQLISEATSKFGLGLIELRRI 235
                          R++F+V KA+QER+A           A +IS+A +K G GLIE+RRI
Sbjct:   182 AVEQKQIAQQDAERARFIVEKAEQERQANVIRAEGEAESADIISKAVAKAGNGLIEIRRI 241

Query:   236 EASREIAATLARSPHVAYLPGGKNSN 261
             EAS++IA TLA +P+V YLPGG+  +
Sbjct:   242 EASKDIAHTLASNPNVTYLPGGEGKD 267

GO:0003674 "molecular_function" evidence=ND

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0007007 "inner mitochondrial membrane organization" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0000001 "mitochondrion inheritance" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

UNIPROTKB|G4N4M8 MGG_06004 "Prohibitin-1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 136/247 (55%), Positives = 182/247 (73%)

Query:    30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKD 89
             +SLY V GG RAV+FDR  GV D  + EGTHFLIPWL +  IFD+RT+P   ++ +G+KD
Sbjct:    24 ASLYDVKGGTRAVIFDRLSGVKDTVVNEGTHFLIPWLHRAIIFDVRTKPRMIATTTGSKD 83

Query:    90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149
             LQMV+LTLRVL RPEV  LP I+Q+LG +YDE+VLPSIGNEVLK++VAQF+A +L+T+R 
Sbjct:    84 LQMVSLTLRVLHRPEVKALPKIYQNLGTDYDERVLPSIGNEVLKSIVAQFDAAELITQRE 143

Query:   150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXXXXXXXXXXXXRSKFVVMKAD 209
              VS  +R  L+KRA +FNI L+DV+ITH+++G EF++             R++F+V KA+
Sbjct:   144 AVSQRIRTDLMKRASEFNIALEDVSITHMTFGKEFTKAVEQKQIAQQDAERARFIVEKAE 203

Query:   210 QERRA-----------AQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGK 258
             QER+A           A+ IS A +K G GL+++R+IEASREIA TLA +P+VAYLPGGK
Sbjct:   204 QERQANVIRAEGEAESAETISRAIAKSGDGLVQIRKIEASREIAQTLASNPNVAYLPGGK 263

Query:   259 N-SNMLL 264
               +N+LL
Sbjct:   264 QGTNILL 270

GO:0001302 "replicative cell aging" evidence=ISS

GO:0003674 "molecular_function" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0045861 "negative regulation of proteolysis" evidence=ISS

TAIR|locus:2145718 PHB5 "prohibitin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 90/149 (60%), Positives = 110/149 (73%)

Query:   130 EVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXX 189
             +V+KAVVAQFNAD+LLTERP VSAL+RE+LIKRA++FNIVLDDV+IT LSYG EFS    
Sbjct:    96 DVVKAVVAQFNADELLTERPQVSALIRETLIKRAKEFNIVLDDVSITGLSYGKEFSLAVE 155

Query:   190 XXXXXXXXXXRSKFVVMKADQERRAA-----------QLISEATSKFGLGLIELRRIEAS 238
                       RSKFVV KADQERRAA           ++IS+AT+  G+GLI+LRR+EA+
Sbjct:   156 RKQVAQQEAERSKFVVAKADQERRAAVIRAEGESEAARVISKATAGAGMGLIKLRRVEAA 215

Query:   239 REIAATLARSPHVAYLPGGKNSNMLLALN 267
             RE+A TL+ SP+V YLP G   NML A+N
Sbjct:   216 REVAITLSNSPNVVYLPSG--GNMLFAMN 242

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

CGD|CAL0000271 PHB1 [Candida albicans (taxid:5476)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 126/239 (52%), Positives = 177/239 (74%)

Query:    30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKD 89
             S+LY V GG+RAV+FDR +GV    IGEGTHFL+PWLQK  IFD+R  P   ++ +G+KD
Sbjct:    63 SALYDVPGGKRAVIFDRLKGVKQGVIGEGTHFLVPWLQKAVIFDVRVEPRVITTTTGSKD 122

Query:    90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149
             LQ V+LTLRVLSRPEV +LP I+Q LGL+Y E+VLP+IGNE+LK++VAQF+A +L+T+R 
Sbjct:   123 LQNVSLTLRVLSRPEVRKLPTIYQTLGLDYGERVLPAIGNEILKSIVAQFDAAELITQRE 182

Query:   150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXXXXXXXXXXXXRSKFVVMKAD 209
              VSA +R+ L +RA +FNI L+DV+ITH+++G EF++             RSKF+V +A+
Sbjct:   183 VVSARIRQELSRRAAEFNIELEDVSITHMTFGREFTKAVEKKQIAQQDAERSKFLVERAE 242

Query:   210 QERRAA-----------QLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGG 257
             QE++AA            ++S+A +K G GL+ +RR+EAS++IA+TLA SP++ YLP G
Sbjct:   243 QEKKAAIIRAEGEAESADVVSKALAKAGDGLLMIRRLEASKDIASTLANSPNITYLPNG 301

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

CGD|CAL0004834 orf19.357 [Candida albicans (taxid:5476)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 126/239 (52%), Positives = 177/239 (74%)

Query:    30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKD 89
             S+LY V GG+RAV+FDR +GV    IGEGTHFL+PWLQK  IFD+R  P   ++ +G+KD
Sbjct:    63 SALYDVPGGKRAVIFDRLKGVKQGVIGEGTHFLVPWLQKAVIFDVRVEPRVITTTTGSKD 122

Query:    90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149
             LQ V+LTLRVLSRPEV +LP I+Q LGL+Y E+VLP+IGNE+LK++VAQF+A +L+T+R 
Sbjct:   123 LQNVSLTLRVLSRPEVRKLPTIYQTLGLDYGERVLPAIGNEILKSIVAQFDAAELITQRE 182

Query:   150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXXXXXXXXXXXXRSKFVVMKAD 209
              VSA +R+ L +RA +FNI L+DV+ITH+++G EF++             RSKF+V +A+
Sbjct:   183 VVSARIRQELSRRAAEFNIELEDVSITHMTFGREFTKAVEKKQIAQQDAERSKFLVERAE 242

Query:   210 QERRAA-----------QLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGG 257
             QE++AA            ++S+A +K G GL+ +RR+EAS++IA+TLA SP++ YLP G
Sbjct:   243 QEKKAAIIRAEGEAESADVVSKALAKAGDGLLMIRRLEASKDIASTLANSPNITYLPNG 301

GO:0003674 "molecular_function" evidence=ND

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007007 "inner mitochondrial membrane organization" evidence=IEA

GO:0000001 "mitochondrion inheritance" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

DICTYBASE|DDB_G0290123 phbA "Prohibitin" [Dictyostelium discoideum (taxid:44689)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 131/269 (48%), Positives = 187/269 (69%)

Query:     9 SFLTNIXXXXXXXXXXXTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQK 68
             SFL  +           ++  SS+YTVDGG+RAV+FDR  GV ++++GEGTHF++PWLQK
Sbjct:     3 SFLNKLIPLALTVGTGLSLAQSSMYTVDGGQRAVIFDRISGVKEKSVGEGTHFIMPWLQK 62

Query:    69 PFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIG 128
             P IFDIR+ P    S +G+KDLQ V++T+RVL RP+V  LP IF  LGL+YDE++LPS+G
Sbjct:    63 PIIFDIRSSPRNIKSDTGSKDLQTVSVTVRVLFRPDVEHLPSIFSKLGLDYDERILPSLG 122

Query:   129 NEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXX 188
             NEVLK+VVAQ++A +L+T+R  VS  +RESL+KRA++FN++LDDV+ITHLS+  +F+   
Sbjct:   123 NEVLKSVVAQYDATELITQREVVSKEIRESLMKRAKEFNLLLDDVSITHLSFSQDFTNAI 182

Query:   189 XXXXXXXXXXXRSKFVVMKADQERRA----AQLISEATSKFG--LG----LIELRRIEAS 238
                        RSK++VMK +QE++A    A+  +EA    G  +G     IELRRIEA 
Sbjct:   183 EHKQVAQQEAERSKYIVMKNEQEKKANIIRAEGEAEAAKLIGQAMGNSAAFIELRRIEAY 242

Query:   239 REIAATLARSPHVAYLPGGKNSNMLLALN 267
             ++I  +L++S  V Y+P   + N+L+ LN
Sbjct:   243 KDITESLSKSKQVTYVP--TSGNLLMNLN 269

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5AEB1 PHB12 "Prohibitin-like protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 126/239 (52%), Positives = 177/239 (74%)

Query:    30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKD 89
             S+LY V GG+RAV+FDR +GV    IGEGTHFL+PWLQK  IFD+R  P   ++ +G+KD
Sbjct:    63 SALYDVPGGKRAVIFDRLKGVKQGVIGEGTHFLVPWLQKAVIFDVRVEPRVITTTTGSKD 122

Query:    90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149
             LQ V+LTLRVLSRPEV +LP I+Q LGL+Y E+VLP+IGNE+LK++VAQF+A +L+T+R 
Sbjct:   123 LQNVSLTLRVLSRPEVRKLPTIYQTLGLDYGERVLPAIGNEILKSIVAQFDAAELITQRE 182

Query:   150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXXXXXXXXXXXXRSKFVVMKAD 209
              VSA +R+ L +RA +FNI L+DV+ITH+++G EF++             RSKF+V +A+
Sbjct:   183 VVSARIRQELSRRAAEFNIELEDVSITHMTFGREFTKAVEKKQIAQQDAERSKFLVERAE 242

Query:   210 QERRAA-----------QLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGG 257
             QE++AA            ++S+A +K G GL+ +RR+EAS++IA+TLA SP++ YLP G
Sbjct:   243 QEKKAAIIRAEGEAESADVVSKALAKAGDGLLMIRRLEASKDIASTLANSPNITYLPNG 301

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

POMBASE|SPAC1782.06c phb1 "prohibitin Phb1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 127/248 (51%), Positives = 178/248 (71%)

Query:    26 TVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVS 85
             T+L SS+Y V GG+RAVLFDR  GV  + + EGTHFLIPWLQK  ++D+RTRP   ++ +
Sbjct:    20 TLLQSSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTT 79

Query:    86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLL 145
             G+KDLQMV+LTLRVL RPEV  LP I+Q+LGL+YDE+VLPSIGNE+LK+VVAQF+A +L+
Sbjct:    80 GSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELI 139

Query:   146 TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRXXXXXXXXXXXXXRSKFVV 205
             T+R  VSA +R+ L++RA +F I L+DV+ITH+++G EF++             R++F+V
Sbjct:   140 TQREVVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLV 199

Query:   206 MKADQERRA-----------AQLISEATSKFGLGLIELRRIEASREIAATLA-RSPHVAY 253
              +++QER+A           A ++S+A  K G  LI++RR+E S+E+A  LA +   V Y
Sbjct:   200 EQSEQERQANVIRAEGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTY 259

Query:   254 LPGGKNSN 261
             LP G  SN
Sbjct:   260 LPFGAGSN 267

GO:0000001 "mitochondrion inheritance" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0007007 "inner mitochondrial membrane organization" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04331	PHB3_ARATH	No assigned EC number	0.8489	0.9671	0.9566	yes	no
P35232	PHB_HUMAN	No assigned EC number	0.5227	0.9233	0.9301	yes	no
Q9P7H3	PHB1_SCHPO	No assigned EC number	0.5287	0.9416	0.9148	yes	no
Q9BKU4	PHB1_CAEEL	No assigned EC number	0.5073	0.9452	0.9418	yes	no
Q9LK25	PHB4_ARATH	No assigned EC number	0.8243	0.9708	0.9534	no	no
Q3T165	PHB_BOVIN	No assigned EC number	0.5227	0.9233	0.9301	yes	no
P67779	PHB_RAT	No assigned EC number	0.5189	0.9233	0.9301	yes	no
P67778	PHB_MOUSE	No assigned EC number	0.5189	0.9233	0.9301	yes	no
P40961	PHB1_YEAST	No assigned EC number	0.5533	0.8832	0.8432	yes	no
P84173	PHB_CHICK	No assigned EC number	0.5265	0.9233	0.9301	yes	no
P24156	L2CC_DROME	No assigned EC number	0.5094	0.9270	0.9202	yes	no
Q54GI9	PHB1_DICDI	No assigned EC number	0.5296	0.9343	0.9446	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020569001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (283 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
cd03401	196	cd03401, Band_7_prohibitin, Band_7_prohibitin	1e-112
smart00244	160	smart00244, PHB, prohibitin homologues	5e-34
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	8e-25
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	4e-21
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	7e-20
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	5e-09
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	1e-08
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	7e-07
TIGR01933	261	TIGR01933, hflK, HflK protein	3e-06
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	2e-04

>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin

 Score =  320 bits (822), Expect = e-112
 Identities = 124/185 (67%), Positives = 153/185 (82%)

Query: 31  SLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDL 90
           SLY VDGG RAVLF+R  GV D   GEG HF IPW QKP IFD+R RP    S +G+KDL
Sbjct: 1   SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60

Query: 91  QMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPH 150
           QMVN+TLRVL RP+ S+LP I+Q+LG +YDE+VLPSI NEVLKAVVAQF A++L+T+R  
Sbjct: 61  QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 151 VSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQ 210
           VSAL+RE+L +RA+DF I+LDDV+ITHL++  EF++AVE KQVAQQEAER+KFVV KA+Q
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 211 ERRAA 215
           E++AA
Sbjct: 181 EKQAA 185

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  120 bits (303), Expect = 5e-34
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 30  SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVS-GTK 88
           +++  V  GER V+  R   V+   +G G HFLIP++      D+R +          TK
Sbjct: 1   AAIKVVGEGERGVVE-RLGRVL-RVLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITK 58

Query: 89  DLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-E 147
           D   V++   V  R  +  L  +++ L    D  V+  +    L++V+ +   D+LLT +
Sbjct: 59  DNVKVSVDAVVYYR-VLDPLRAVYRVLD--ADYAVIEQLAQTTLRSVIGKRTLDELLTDQ 115

Query: 148 RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQ 192
           R  +S  +RE L + A  + I ++DV I  +    E   A+E +Q
Sbjct: 116 REKISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 97.1 bits (242), Expect = 8e-25
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 33  YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSG--TKDL 90
             V  GE  V+  RF G +   +G G HF +P++Q   + D R +    +      TKD 
Sbjct: 1   TIVPPGEVGVVT-RF-GKVSRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDG 58

Query: 91  QMVNLTLRV---LSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE 147
             VN+ + V   +  P       +  + G E  +++L  +    L+ V+A++  D+LL+ 
Sbjct: 59  VPVNVDVTVQYRVEDPAK----LVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSN 114

Query: 148 RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMK 207
           R  ++  V+E+L +    + + ++DV IT +    E + A+E+KQ A+QEAE  +  + +
Sbjct: 115 REEIAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAE--EAEIER 172

Query: 208 ADQER 212
           A+ E 
Sbjct: 173 AEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 89.8 bits (223), Expect = 4e-21
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 20/218 (9%)

Query: 19  FGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIR--T 76
             L     +L SS++ V  GER V+  RF          G HF IP+ +      +R   
Sbjct: 8   ILLVILIVLLFSSIFVVKEGERGVVL-RFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDL 66

Query: 77  RPHTFSSVS----GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVL 132
           R  T          TKD  +V++   V  R    +         +E  E  L  +    L
Sbjct: 67  RERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVY----NVENAEAALRQLVQSAL 122

Query: 133 KAVVAQFNADQLLTERPH-VSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191
           ++V+ +   D+LLTER   ++A +RE L + A  + I + DV I  +    E   A+E++
Sbjct: 123 RSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQ 182

Query: 192 QVAQQEAERSKF--------VVMKADQERRAAQLISEA 221
             A+++               +++A+ E  AA +++EA
Sbjct: 183 MAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEA 220

Length = 291

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 82.4 bits (204), Expect = 7e-20
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 70  FIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGN 129
            I   R           TKD   V +   V  R        ++     E  E+ L  +  
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQ 58

Query: 130 EVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE 189
             L++V+ +   D+LL +R  ++A VRE+L +    + I + DV I  +    E   A+E
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 190 QKQ 192
            +Q
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 31/210 (14%)

Query: 32  LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVS---GTK 88
           L+ VD GE+AV+  RF  V+      G HF +P++Q+   FD   R  T  S      TK
Sbjct: 1   LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFD--KRILTLDSDPQRVLTK 57

Query: 89  DLQMVNLTLRVLSR-PEVSRLPYIFQHLGLEYDEKV--LPSIGNEVLKAVVAQFNADQLL 145
           D + + +      R  +  R    +Q +G E       L  I N  L+A   +    +L+
Sbjct: 58  DKKRLIVDAYAKWRITDPLRF---YQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELV 114

Query: 146 -TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAV------EQKQVAQQ-- 196
             ER  +   +R ++ + A++  I + DV I  +    E S +V      E++++A +  
Sbjct: 115 SGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFR 174

Query: 197 -----EAERSKFVVMKADQERRAAQLISEA 221
                EAER     ++AD +R    +++EA
Sbjct: 175 AEGEEEAER-----IRADADRERTVILAEA 199

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 45/226 (19%)

Query: 38  GERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSVSG-TKDLQMVNL 95
            ER V+  R  G    T+G G HF+IP++ +  +  D+R +          TKD    N+
Sbjct: 4   YERGVVE-RL-GKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKD----NV 57

Query: 96  TLRV------------LSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEV---LKAVVAQFN 140
           T+RV             +   V    Y               +I       L++V+ +  
Sbjct: 58  TVRVDAVLYYRVVDPVKAVYGVEDYRY---------------AISQLAQTTLRSVIGKME 102

Query: 141 ADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER 200
            D+LL+ER  ++A + E L +    + + ++ V I  +    E   A+ +    Q EAER
Sbjct: 103 LDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAK----QAEAER 158

Query: 201 SK-FVVMKADQERRAAQLISEA--TSKFGLGLIELRRIEASREIAA 243
            K   +++A+ ER+AA L++EA   +      ++LR +E   EIA 
Sbjct: 159 EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK 204

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 59/230 (25%), Positives = 87/230 (37%), Gaps = 39/230 (16%)

Query: 20  GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPW---------LQKPF 70
                   L S  Y V  GER V+  RF G    T+  G H+ +P+         + +  
Sbjct: 3   AALLVILWLLSGFYIVQPGERGVVL-RF-GKYSRTVEPGLHWKLPYPIEVVEVVPVFQLR 60

Query: 71  IFDIRTRPHTFSSVSG-----TKDLQMVNLTLRV---LSRPEVSRLPYIFQHLGLEYDEK 122
              I  R  +  SV G     T D  +V++   V   +S P      Y+F    +   E 
Sbjct: 61  SVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDPY----DYLFN---VRDPEG 113

Query: 123 VLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRARDFN--IVLDDVAITHLS 179
            L       ++ VV +   D +LTE R  ++  VRE L      +   I +  V +    
Sbjct: 114 TLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDAD 173

Query: 180 YGAEFSRAVEQKQVAQQEAERSKF--------VVMKADQERRAAQLISEA 221
              E   A +    A+Q+ ER           VV KA  E  AA++I EA
Sbjct: 174 PPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGE--AARIIQEA 221

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 20/203 (9%)

Query: 32  LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDI-RTRPHTFSSVSGTKDL 90
           +YT+   ER V+  RF G    T+  G ++  P++++ +  ++   R      +  T D 
Sbjct: 1   IYTIGEAERGVVL-RF-GKYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDE 58

Query: 91  QMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE-RP 149
            +VN+ + V  R      PY +    +E  E  L    +  L+ V+     D +LTE R 
Sbjct: 59  NIVNVEMNVQYR---ITDPYKYL-FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRS 114

Query: 150 HVSALVRESL--IKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER------- 200
            +    +E L  I    D  I + DV         E   A +   +A+++ ER       
Sbjct: 115 QIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEA 174

Query: 201 -SKFVVMKADQERRAAQLISEAT 222
            +  VV KA     A ++I EA 
Sbjct: 175 YANEVVPKA--RGDAQRIIEEAR 195

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 87  TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQL-L 145
           +K+   +N  + V  R   ++   +   LG +Y  K++      +++ V  ++ A+Q+  
Sbjct: 18  SKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYS 77

Query: 146 TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQ 192
           T+R  + + +++ LI+      ++L++V + ++    + + A+E K 
Sbjct: 78  TKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAKL 124

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
KOG3083	271	consensus Prohibitin [Posttranslational modificati	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.97
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	99.95
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.91
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.87
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.86
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.82
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.74
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.7
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.62
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.47
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.78
PTZ00491	850	major vault protein; Provisional	97.82
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	97.44
PRK13665	316	hypothetical protein; Provisional	97.25
COG1580	159	FliL Flagellar basal body-associated protein [Cell	96.26
PRK06654	181	fliL flagellar basal body-associated protein FliL;	94.9
PRK12785	166	fliL flagellar basal body-associated protein FliL;	94.69
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	93.61
PF03748	99	FliL: Flagellar basal body-associated protein FliL	91.54
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	89.71
PRK07718	142	fliL flagellar basal body-associated protein FliL;	88.27
PRK05697	137	flagellar basal body-associated protein FliL-like	86.06
PRK07021	162	fliL flagellar basal body-associated protein FliL;	84.32
PRK08455	182	fliL flagellar basal body-associated protein FliL;	83.17
PRK05696	170	fliL flagellar basal body-associated protein FliL;	80.08

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=1.6e-42  Score=306.78  Aligned_cols=236  Identities=21%  Similarity=0.279  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeec------eecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCC
Q 023988           17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKD   89 (274)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd   89 (274)
                      ++++++++++++++|+++|++||+||++ +||++.+.      +++||+||++||++++.++|+|.+.++.+.+ +.|+|
T Consensus         5 ~~~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D   83 (334)
T PRK11029          5 VIAIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKE   83 (334)
T ss_pred             HHHHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCC
Confidence            3334555667778999999999999996 99998653      4899999999999999999999999998854 89999


Q ss_pred             cceEEEEEEEEEeecCCCHhHHHHHhc-cc--cccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHH---
Q 023988           90 LQMVNLTLRVLSRPEVSRLPYIFQHLG-LE--YDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKR---  162 (274)
Q Consensus        90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g-~~--~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~---  162 (274)
                      +..|.+|++++|++.  |+..+|..++ .+  .....|.+.+++++|+++|+++++++++ +|++|..++++.+++.   
T Consensus        84 ~~~V~VD~~V~yrI~--Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~  161 (334)
T PRK11029         84 KKDLIVDSYIKWRIS--DFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAG  161 (334)
T ss_pred             CCEEEEEEEEEEEEC--CHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence            999999999999994  6777777654 22  2457788999999999999999999997 7999999999999954   


Q ss_pred             ------------------------------------hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH------
Q 023988          163 ------------------------------------ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER------  200 (274)
Q Consensus       163 ------------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~------  200 (274)
                                                          +.+|||+|.+|.|++++||+++.+++++++.|++++++      
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~ae  241 (334)
T PRK11029        162 TEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQ  241 (334)
T ss_pred             ccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                46899999999999999999999999999999997542      


Q ss_pred             ------------------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEec
Q 023988          201 ------------------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLP  255 (274)
Q Consensus       201 ------------------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~  255 (274)
                                              ++..+.+|++||+++++++++++++ |+++++ ++||++++..   +++++++++|
T Consensus       242 ge~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~-p~~~~~~~~lea~~~~~---~~~~~~~vl~  317 (334)
T PRK11029        242 GQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQD-PDFYAFIRSLRAYENSF---SGNQDVMVLS  317 (334)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh---cCCCcEEEEC
Confidence                                    1124667788888899999999887 999998 9999999953   3444689999


Q ss_pred             CCCC
Q 023988          256 GGKN  259 (274)
Q Consensus       256 ~~~~  259 (274)
                      ++++
T Consensus       318 ~~~~  321 (334)
T PRK11029        318 PDSD  321 (334)
T ss_pred             CChH
Confidence            9983

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=4.6e-42  Score=304.73  Aligned_cols=236  Identities=17%  Similarity=0.267  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeec------eecCeeEEeccccceeEEEEeeeeeeeeee-cccCCC
Q 023988           17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKD   89 (274)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd   89 (274)
                      ++++++++++++++|+++|++||+||++ +||++.+.      +++||+||++||++++.++|++.++++.+. .+.|+|
T Consensus         5 ~~~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD   83 (317)
T TIGR01932         5 GIVVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKE   83 (317)
T ss_pred             HHHHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCC
Confidence            3334445577788999999999999995 99998643      348999999999999999999999999765 589999


Q ss_pred             cceEEEEEEEEEeecCCCHhHHHHHhcc---ccccccccchHHHHHHHHhhcCChhHHhh-chHHH--------------
Q 023988           90 LQMVNLTLRVLSRPEVSRLPYIFQHLGL---EYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHV--------------  151 (274)
Q Consensus        90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~---~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i--------------  151 (274)
                      ++++.++++++||+.  ++..+|.++|.   ++.+..|.+.+++++|+++|+|+++|+++ +|+++              
T Consensus        84 ~~~V~Vd~~V~yrV~--d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~  161 (317)
T TIGR01932        84 KKDIIIDTYIRWRIE--DFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGK  161 (317)
T ss_pred             CCEEEEEEEEEEEEC--CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccc
Confidence            999999999999995  78888888772   34677899999999999999999999997 46655              


Q ss_pred             ---------------HHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH----------------
Q 023988          152 ---------------SALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER----------------  200 (274)
Q Consensus       152 ---------------~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~----------------  200 (274)
                                     .+.+.+.+...+.+||++|++|.|+++++|+++.+++++++.|++++++                
T Consensus       162 ~~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a  241 (317)
T TIGR01932       162 INKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILG  241 (317)
T ss_pred             ccccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           5678888888999999999999999999999999999998888875311                


Q ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEecCCCC
Q 023988          201 --------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGKN  259 (274)
Q Consensus       201 --------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~~~~~  259 (274)
                                    ++..+.+|++||+++++++++++++ |+++++ ++||+++++.   ++.++++++|+++.
T Consensus       242 ~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~-p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~  311 (317)
T TIGR01932       242 KAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKD-PEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSE  311 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHh---CCCCCEEEECCCcH
Confidence                          1235677888888899999999987 999997 9999999953   34556899999883

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-41  Score=275.11  Aligned_cols=249  Identities=54%  Similarity=0.849  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeecccCCCcceEEE
Q 023988           16 RAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNL   95 (274)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkd~~~v~v   95 (274)
                      .+++++.+++.....|+|.|+.||++++|+|+||+.+.++..|.||.+|||++-+.||+|-+.+.+.+.+.|+|-+.|++
T Consensus        22 ~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI  101 (290)
T KOG3090|consen   22 KLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNI  101 (290)
T ss_pred             HHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEe
Confidence            34445556677788999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 023988           96 TLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAI  175 (274)
Q Consensus        96 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I  175 (274)
                      ...+.-|++.+.++.+|+++|.||.++.+..++.+.++.++++|+..+++++|+..+..|++.|-++..++.|.++||.|
T Consensus       102 ~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSi  181 (290)
T KOG3090|consen  102 GLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSI  181 (290)
T ss_pred             eeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeeccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q 023988          176 THLSYGAEFSRAVEQKQVAQQEAERSKFV-----------VMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAAT  244 (274)
Q Consensus       176 ~~i~~p~~~~~ai~~k~~A~qeae~a~~~-----------~~~A~~ea~aa~~~~~a~~~~~~~~~~~~~lea~~~ia~~  244 (274)
                      +++.|.+++..+++.||.|+|||+||++.           +.+|++||++++.+.+|.+++ |.|+.+|.+|+-++||+.
T Consensus       182 T~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn-~~fi~Lrki~aAr~IA~t  260 (290)
T KOG3090|consen  182 TELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN-PAFITLRKIEAAREIAQT  260 (290)
T ss_pred             eeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC-ccceeehhHHHHHHHHHH
Confidence            99999999999999999999999997654           556677788899999999987 999999999999999999


Q ss_pred             hcCCCCEEEecCCCCCcceeccCc
Q 023988          245 LARSPHVAYLPGGKNSNMLLALNP  268 (274)
Q Consensus       245 ~~~~~~~i~l~~~~~~~~~~~~~~  268 (274)
                      +++|+|.++++++.   ++||+.+
T Consensus       261 ia~S~NkvyL~~~~---LlLn~q~  281 (290)
T KOG3090|consen  261 IASSANKVYLSSDD---LLLNLQD  281 (290)
T ss_pred             HhcCCCeEEecccc---eeeeehh
Confidence            99999999999876   6666644

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=1.9e-39  Score=294.58  Aligned_cols=244  Identities=18%  Similarity=0.235  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeee-eecccCCCcceEEE
Q 023988           17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTF-SSVSGTKDLQMVNL   95 (274)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~tkd~~~v~v   95 (274)
                      ++++++++++|+++|+++|+++|+||++ +||++. .+++||+||++||+++|..+|++.+.... +..++|+|+..|++
T Consensus        82 ~ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~V  159 (419)
T PRK10930         82 GIAAAAVVIIWAASGFYTIKEAERGVVT-RFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRV  159 (419)
T ss_pred             HHHHHHHHHHHHHheEEEECCCeEEEEE-ECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEE
Confidence            3344555667888999999999999995 999986 58999999999999999999998765332 34589999999999


Q ss_pred             EEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEE
Q 023988           96 TLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDD  172 (274)
Q Consensus        96 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~  172 (274)
                      +++++|||.  |+..++.+  ..+++..|.+.+++++|+++++++++++++ +|++|.+++++.+++.++.|  ||+|.+
T Consensus       160 d~~VqYrI~--Dp~~~lf~--v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~  235 (419)
T PRK10930        160 EMNVQYRVT--DPEKYLFS--VTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLD  235 (419)
T ss_pred             EEEEEEEEC--CHHHHHHh--ccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence            999999995  56555544  456778899999999999999999999998 69999999999999999987  999999


Q ss_pred             EEEeeccCCHHHHHHHHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHH-HHHHHHH
Q 023988          173 VAITHLSYGAEFSRAVEQKQVAQQEAERS------------------------------KFVVMKADQERRA-AQLISEA  221 (274)
Q Consensus       173 v~I~~i~~p~~~~~ai~~k~~A~qeae~a------------------------------~~~~~~A~~ea~a-a~~~~~a  221 (274)
                      |.|++++||+++.+++++.+.|+++.++.                              +..+.+|++||++ +++++ +
T Consensus       236 V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~-~  314 (419)
T PRK10930        236 VNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLP-E  314 (419)
T ss_pred             EEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-H
Confidence            99999999999999999988888764330                              1224445555544 33443 6


Q ss_pred             hhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEecCCCCCcceeccCcccCC
Q 023988          222 TSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTG  272 (274)
Q Consensus       222 ~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~  272 (274)
                      |.++ |++++. .|||+++++   ++ +.++++++.+++..++|+|.+.+.+
T Consensus       315 Y~ka-P~vtr~RlYletme~v---l~-~~~kvivd~~~~~~~~lpl~~~~~~  361 (419)
T PRK10930        315 YKAA-PEITRERLYIETMEKV---LG-HTRKVLVNDKGGNLMVLPLDQMLKG  361 (419)
T ss_pred             HhhC-HHHHHHHHHHHHHHHH---Hc-cCCEEEEeCCCCeeEEeechHhhhc
Confidence            7776 999997 999999996   43 4455677766444678888875443

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=7.8e-40  Score=272.65  Aligned_cols=192  Identities=64%  Similarity=0.989  Sum_probs=179.9

Q ss_pred             cEEEecCCeEEEEEecccceee-ceecCeeEEeccccceeEEEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHh
Q 023988           31 SLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLP  109 (274)
Q Consensus        31 ~~~~V~~ge~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~  109 (274)
                      ||++|++|++||++ +||+... .+++||+||++||+++++.+|++.+.+++...+.|+|++.++++++++|++.+++++
T Consensus         1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~   79 (196)
T cd03401           1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP   79 (196)
T ss_pred             CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence            68999999999997 8887544 489999999999999999999999999988888999999999999999999988889


Q ss_pred             HHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHH
Q 023988          110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE  189 (274)
Q Consensus       110 ~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~  189 (274)
                      .+|..+|.++.+..|.+.+++++|+++|+|+++|++++|++|++.|.+.+++.+++||+.|.++.|+++++|+++.++++
T Consensus        80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~  159 (196)
T cd03401          80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE  159 (196)
T ss_pred             HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence            99999997777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 023988          190 QKQVAQQEAERSKFVVMKADQERRAAQLISEATS  223 (274)
Q Consensus       190 ~k~~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~  223 (274)
                      +|+.|+|++++++.++.+|++||++..+.|++-.
T Consensus       160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea  193 (196)
T cd03401         160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEA  193 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999888777643

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-40  Score=265.72  Aligned_cols=259  Identities=58%  Similarity=0.937  Sum_probs=243.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeeccc
Q 023988            7 AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSG   86 (274)
Q Consensus         7 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~   86 (274)
                      |.+++.++..+++.+.++..++.++.|.|+.|+++|+|.||.|+.+.+.+.|-||.+||.++-+.||.+.+...++....
T Consensus         2 aa~~l~~~~k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itG   81 (271)
T KOG3083|consen    2 AAKVLESIGKFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG   81 (271)
T ss_pred             cchhhhhccccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccC
Confidence            56778888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcC
Q 023988           87 TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDF  166 (274)
Q Consensus        87 tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~  166 (274)
                      |||-+.|++...+.++..++.++.+|+++|.+|.+..+..+....++.++++|+..|++++|+-+++.+.+.+.++...+
T Consensus        82 skdLQ~VniTlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~F  161 (271)
T KOG3083|consen   82 SKDLQNVNITLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATF  161 (271)
T ss_pred             chhhhcccceEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcCcchhHHHHH
Q 023988          167 NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQER-----------RAAQLISEATSKFGLGLIELRRI  235 (274)
Q Consensus       167 Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~a~~~~~~A~~ea-----------~aa~~~~~a~~~~~~~~~~~~~l  235 (274)
                      |+.+++|.|++..|-.++.++++.||.||||||||++.+++|++++           ++++++++++.+.+.-+++++.+
T Consensus       162 gl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrl  241 (271)
T KOG3083|consen  162 GLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRL  241 (271)
T ss_pred             CeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhh
Confidence            9999999999999999999999999999999999987777765554           55899999998888999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEecCCCCCcceeccC
Q 023988          236 EASREIAATLARSPHVAYLPGGKNSNMLLALN  267 (274)
Q Consensus       236 ea~~~ia~~~~~~~~~i~l~~~~~~~~~~~~~  267 (274)
                      |+-++++..++.++|+.++|+|.  +++++++
T Consensus       242 EAa~dia~~Ls~s~nv~YLp~g~--s~l~~l~  271 (271)
T KOG3083|consen  242 EAAEDIAYQLSRSRNVTYLPAGQ--SMLLQLN  271 (271)
T ss_pred             hhHHHHHHHHhcCCCceeccCCc--ceeccCC
Confidence            99999999999999999999776  7777663

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.7e-38  Score=270.85  Aligned_cols=205  Identities=26%  Similarity=0.321  Sum_probs=180.1

Q ss_pred             EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCHhH
Q 023988           32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRLPY  110 (274)
Q Consensus        32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~~~  110 (274)
                      +++|++||+||++ +||++.+.+++||+||++||+++++.+|++.+.++.+. .+.|+|+++++++++++||+.  ++..
T Consensus         1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~   77 (242)
T cd03405           1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLR   77 (242)
T ss_pred             CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHH
Confidence            5899999999996 99998766799999999999999999999999888754 489999999999999999995  6778


Q ss_pred             HHHHhccc--cccccccchHHHHHHHHhhcCChhHHhhc-hHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988          111 IFQHLGLE--YDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA  187 (274)
Q Consensus       111 ~~~~~g~~--~~~~~i~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  187 (274)
                      +|.+++..  ..+..|.+.+++++|+++++++++|++++ |++|++.+.+.+++.+++||++|.+|.|++|+||+++.++
T Consensus        78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a  157 (242)
T cd03405          78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES  157 (242)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence            88887732  23478999999999999999999999987 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH------------------------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHH
Q 023988          188 VEQKQVAQQEAER------------------------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIE  236 (274)
Q Consensus       188 i~~k~~A~qeae~------------------------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~le  236 (274)
                      |++++.|+++.++                              +++.+.+|++||+++++++++++++ |+++.+ ++||
T Consensus       158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~-p~~~~~~~~l~  236 (242)
T cd03405         158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKD-PEFYAFYRSLE  236 (242)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            9888877775321                              1234667777788888888889887 999998 9999


Q ss_pred             HHHH
Q 023988          237 ASRE  240 (274)
Q Consensus       237 a~~~  240 (274)
                      +++.
T Consensus       237 ~~~~  240 (242)
T cd03405         237 AYRN  240 (242)
T ss_pred             HHHh
Confidence            9875

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=2.7e-37  Score=268.30  Aligned_cols=225  Identities=19%  Similarity=0.250  Sum_probs=185.5

Q ss_pred             EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeee-eeeeecccCCCcceEEEEEEEEEeecCCCHhH
Q 023988           32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRP-HTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPY  110 (274)
Q Consensus        32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~-~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~  110 (274)
                      +++|++||+||++ +||++. .+++||+||++||+++++.+|++.+. +..+..+.|+|+..+.++++++||+.  |+..
T Consensus         1 ~~iV~~ge~~Vv~-~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~   76 (261)
T TIGR01933         1 IYTIGEAERGVVL-RFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT--DPYK   76 (261)
T ss_pred             CEEeCCCeEEEEE-EcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHH
Confidence            5899999999995 999976 58999999999999999999997654 22223478999999999999999995  4555


Q ss_pred             HHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCHHHHHH
Q 023988          111 IFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGAEFSRA  187 (274)
Q Consensus       111 ~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a  187 (274)
                      ++.  +.++.+..|.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.|  ||+|++|.|++++||+++.++
T Consensus        77 ~~~--~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        77 YLF--SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             HHH--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence            443  3566778899999999999999999999998 89999999999999999965  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHH
Q 023988          188 VEQKQVAQQEAERS------------------------------KFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIE  236 (274)
Q Consensus       188 i~~k~~A~qeae~a------------------------------~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~le  236 (274)
                      +++++.|+|+++++                              +..+++|++||++.++++++++++ |+++.+ +++|
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~-p~~~~~~~~le  233 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKA-PDVTRERLYLE  233 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence            99999988864431                              133555666667777777888776 999988 9999


Q ss_pred             HHHHHHHHhcCCCCEEEecCCCCCcceecc
Q 023988          237 ASREIAATLARSPHVAYLPGGKNSNMLLAL  266 (274)
Q Consensus       237 a~~~ia~~~~~~~~~i~l~~~~~~~~~~~~  266 (274)
                      +++++.   ++.+++++++++++.--++++
T Consensus       234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~  260 (261)
T TIGR01933       234 TMEKVL---SNTRKVLLDDKKGNNLLYLPL  260 (261)
T ss_pred             HHHHHH---ccCCeEEEECCCCCeeeeecC
Confidence            999953   445667888887743335554

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.9e-37  Score=269.05  Aligned_cols=217  Identities=19%  Similarity=0.287  Sum_probs=175.9

Q ss_pred             CCeEEEEEecccceeeceecCeeEEecccccee-EEEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHhHHHHHh
Q 023988           37 GGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHL  115 (274)
Q Consensus        37 ~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~  115 (274)
                      +|++||+ .+||++. ++++||+||++||++++ ..+|++.++++++..+.|+|++.|++|++++|||.+..+..++.++
T Consensus         1 q~~~~Vv-~rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~   78 (262)
T cd03407           1 QSQVAII-ERFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL   78 (262)
T ss_pred             CcEEEEE-eecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence            5899999 5999986 58999999999999998 4899999999998889999999999999999999765554555554


Q ss_pred             ccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023988          116 GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQ  195 (274)
Q Consensus       116 g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~  195 (274)
                      +  .....|.+.+++++|+++|++++++++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+
T Consensus        79 ~--~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~  156 (262)
T cd03407          79 G--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ  156 (262)
T ss_pred             C--CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4  23457999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh----H----HHHHHHH-----------HHHHHHHHHHHHhhh------------cCcchhH----HHHHHHHHH
Q 023988          196 QEAERS----K----FVVMKAD-----------QERRAAQLISEATSK------------FGLGLIE----LRRIEASRE  240 (274)
Q Consensus       196 qeae~a----~----~~~~~A~-----------~ea~aa~~~~~a~~~------------~~~~~~~----~~~lea~~~  240 (274)
                      ++++++    +    ..+.+|+           ++|++.++.+++..+            ..|+..+    .+|+|++++
T Consensus       157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~  236 (262)
T cd03407         157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA  236 (262)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence            976542    1    2233444           444444444444221            1133332    379999999


Q ss_pred             HHHHhcCCCCEEEecCCCCC
Q 023988          241 IAATLARSPHVAYLPGGKNS  260 (274)
Q Consensus       241 ia~~~~~~~~~i~l~~~~~~  260 (274)
                      ++.   ++++++++|++.++
T Consensus       237 ~~~---~~~kviv~p~~~~~  253 (262)
T cd03407         237 YGR---SSSTVVFRPHGPGG  253 (262)
T ss_pred             HHh---CCCCEEEecCCCcc
Confidence            864   34578999998776

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=2.2e-36  Score=255.37  Aligned_cols=210  Identities=24%  Similarity=0.359  Sum_probs=184.4

Q ss_pred             ecCCeEEEEEecccceeeceecCeeEEecccccee-EEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHH
Q 023988           35 VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIF  112 (274)
Q Consensus        35 V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~  112 (274)
                      |++||+||++ +||++.+ +++||+||++||++++ +.+|++.++++++.. +.|+|++++.+++++.||+.  |+..++
T Consensus         1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~   76 (215)
T cd03403           1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAV   76 (215)
T ss_pred             CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHH
Confidence            6899999996 9999875 6999999999999999 999999999998765 89999999999999999984  555555


Q ss_pred             HHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHH
Q 023988          113 QHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQ  192 (274)
Q Consensus       113 ~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~  192 (274)
                      ..  .++++..+.+.+++++|+++++++++|++++|+++++.+.+.+++.+++|||+|++|.|+++++|+++.+++++++
T Consensus        77 ~~--~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~  154 (215)
T cd03403          77 YG--VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA  154 (215)
T ss_pred             hc--CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence            44  3445667999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc--CcchhHHHHHHHHHHHHHHhcCCCCEEEecC
Q 023988          193 VAQQEAERSKFVVMKADQERRAAQLISEATSKF--GLGLIELRRIEASREIAATLARSPHVAYLPG  256 (274)
Q Consensus       193 ~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~~~--~~~~~~~~~lea~~~ia~~~~~~~~~i~l~~  256 (274)
                      .|++++++   .+.+|++|++++++.+++.++.  +|.+++++++|+.+.++++   .+.++++|+
T Consensus       155 ~A~~~~~a---~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~  214 (215)
T cd03403         155 EAEREKRA---KIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKE---AASTVVFPA  214 (215)
T ss_pred             HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---cCCeEEeeC
Confidence            99887654   6889999999999999998653  4889999999999998754   233445544

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=8.5e-36  Score=259.59  Aligned_cols=175  Identities=23%  Similarity=0.260  Sum_probs=146.8

Q ss_pred             HHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEE-Eeeeeee------------ee-eecc
Q 023988           20 GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIF-DIRTRPH------------TF-SSVS   85 (274)
Q Consensus        20 ~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~-~~~~~~~------------~~-~~~~   85 (274)
                      +++++++++++|+++|++||+||++ +||++. .+++||+||++||++++..+ |++.++.            .. +..+
T Consensus         3 ~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (266)
T cd03404           3 AALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLM   80 (266)
T ss_pred             HHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccce
Confidence            4556667788999999999999995 999987 68999999999998887544 3432111            11 2347


Q ss_pred             cCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc-hHHHHHHHHHHHHHHhh
Q 023988           86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRAR  164 (274)
Q Consensus        86 ~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~  164 (274)
                      .|+||+.+.++++++||+.  ++..++..  ..+.+..|.+.+++++|+++|+++++|++++ |+++.+.+.+.+++.++
T Consensus        81 ~T~D~~~v~vd~~v~yrI~--d~~~~~~~--~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~  156 (266)
T cd03404          81 LTGDENIVDVEFAVQYRIS--DPYDYLFN--VRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD  156 (266)
T ss_pred             EeCCCCEEEEEEEEEEEEC--CHHHHHhh--CCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence            8999999999999999996  44444333  4556678999999999999999999999996 99999999999999999


Q ss_pred             cC--CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Q 023988          165 DF--NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER  200 (274)
Q Consensus       165 ~~--Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~  200 (274)
                      .|  |++|.+|.|++++||+++.+++++++.|+|++++
T Consensus       157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~  194 (266)
T cd03404         157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRER  194 (266)
T ss_pred             ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            76  9999999999999999999999999999997654

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.5e-34  Score=247.95  Aligned_cols=170  Identities=15%  Similarity=0.219  Sum_probs=152.6

Q ss_pred             hhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeee-ecccCCCcceEEEE-EEEEEeecC
Q 023988           28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS-SVSGTKDLQMVNLT-LRVLSRPEV  105 (274)
Q Consensus        28 ~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~tkd~~~v~v~-~~v~y~v~~  105 (274)
                      +++|+++|++||+||++ +||++...+++||+||++||++++..+|++.++++.+ ..+.|+||+.+.+| +.++|.++|
T Consensus         1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp   79 (280)
T cd03406           1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP   79 (280)
T ss_pred             CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence            46799999999999996 9999877789999999999999999999999998875 45889999999999 567888877


Q ss_pred             CCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCH
Q 023988          106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGA  182 (274)
Q Consensus       106 ~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~  182 (274)
                      ......+.++|.++....|.+.+++++|+++|+++++|+++ +|+++.+.+++.+++.++.|  ||+|.+|.|++++||+
T Consensus        80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~  159 (280)
T cd03406          80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE  159 (280)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence            76666666677778899999999999999999999999998 89999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 023988          183 EFSRAVEQKQVAQQEAE  199 (274)
Q Consensus       183 ~~~~ai~~k~~A~qeae  199 (274)
                      ++.+++ ++|.||++..
T Consensus       160 ~V~~af-erM~aER~k~  175 (280)
T cd03406         160 AIRRNY-ELMEAEKTKL  175 (280)
T ss_pred             HHHHHH-HHHHHHHHhh
Confidence            999998 5777777654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=4e-34  Score=239.09  Aligned_cols=241  Identities=21%  Similarity=0.261  Sum_probs=207.3

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEecccceee-ceecCeeEEeccccceeEEEEeeeeeeeeee
Q 023988            5 QAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS   83 (274)
Q Consensus         5 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~   83 (274)
                      +.++..+-.++.++++++-.-+-+++|+.+|++.|++|+| |+|++.. ...+||+.|++|+++++.++|+|++.++++.
T Consensus        28 ~~~~~~~l~~~S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPp  106 (288)
T KOG2621|consen   28 LGACEWLLVILSFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPP  106 (288)
T ss_pred             cchHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCH
Confidence            3666766666666666666777788999999999999999 9999743 5779999999999999999999999999998


Q ss_pred             c-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHH
Q 023988           84 V-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKR  162 (274)
Q Consensus        84 ~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~  162 (274)
                      + +.|||.+.+.+|+.++||+.  |+-.-+.+  .++...-.+-..++.+|+++++.++.|++++|+.|+.++...|++.
T Consensus       107 qeIltkDsvtvsVdAvVyyri~--dpi~sv~~--V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~  182 (288)
T KOG2621|consen  107 QEILTKDSVTISVDAVVYYRIS--DPIIAVNN--VGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEA  182 (288)
T ss_pred             HHHhcccceEEEeceEEEEEec--CHHHHHHh--ccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhc
Confidence            7 89999999999999999996  44333333  5666666788999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh---hcCcchhHHHHHHHH
Q 023988          163 ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER-SKFVVMKADQERRAAQLISEATS---KFGLGLIELRRIEAS  238 (274)
Q Consensus       163 l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~-a~~~~~~A~~ea~aa~~~~~a~~---~~~~~~~~~~~lea~  238 (274)
                      .+.||++|++|.|+||++|.+.+.++.    |++||.| |+++++.||+|..+.+.++++..   + +|..+++||++++
T Consensus       183 T~~WGvkVeRVEikDvrlp~qlqrama----aeAeA~reA~Akviaaege~~as~al~~aa~v~~~-sp~alqLryLqtl  257 (288)
T KOG2621|consen  183 TEPWGVKVERVEIKDVRLPAQLQRAMA----AEAEATREARAKVIAAEGEKKASEALKEAADVISE-SPIALQLRYLQTL  257 (288)
T ss_pred             ccccceEEEEEEEeeeechHhhhhhhh----chhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccC-Cchhhhhhhhhcc
Confidence            999999999999999999999888765    4777665 77899999999999999988853   4 4999999999999


Q ss_pred             HHHHHHhcCCCCEEEecCCC
Q 023988          239 REIAATLARSPHVAYLPGGK  258 (274)
Q Consensus       239 ~~ia~~~~~~~~~i~l~~~~  258 (274)
                      ..++   ++++++++.|-.-
T Consensus       258 ~sia---~e~~~tivfP~p~  274 (288)
T KOG2621|consen  258 NSIA---AEKNSTIVFPLPI  274 (288)
T ss_pred             hhhh---cCCCCCcccCCCH
Confidence            8886   3577788888443

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-32  Score=237.81  Aligned_cols=235  Identities=27%  Similarity=0.376  Sum_probs=189.1

Q ss_pred             HHHHHHHHHhhccEEEecCCeEEEEEecccceeeceec-CeeEEeccc---c-ceeEEEEeeeeeeee-eec-ccCCCcc
Q 023988           19 FGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIG-EGTHFLIPW---L-QKPFIFDIRTRPHTF-SSV-SGTKDLQ   91 (274)
Q Consensus        19 ~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~-pG~~~~~P~---~-~~v~~~~~~~~~~~~-~~~-~~tkd~~   91 (274)
                      ++++++++++++++++|++++.+++. +||++.. .++ ||+||++||   + .....++.+.++++. +.+ +.|+|+.
T Consensus         8 ~~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~~-~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~   85 (291)
T COG0330           8 ILLVILIVLLFSSIFVVKEGERGVVL-RFGRYTR-TLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV   85 (291)
T ss_pred             HHHHHHHHHHHceeEEEcCCceEEEE-Eecceee-ecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCC
Confidence            35666788889999999999999995 9999864 677 999999999   3 334678888888888 554 8999999


Q ss_pred             eEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH-HHHHHHHHHHHHHhhcCCeEE
Q 023988           92 MVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP-HVSALVRESLIKRARDFNIVL  170 (274)
Q Consensus        92 ~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~v  170 (274)
                      .+.+|++++||+.  |+..++.+  .+.++..+.+.+++.+|++++++++++++++|+ .|+..+.+.+++.+++||+.|
T Consensus        86 ~V~vd~~v~~rv~--d~~~~~~~--v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V  161 (291)
T COG0330          86 IVSVDAVVQYRVT--DPQKAVYN--VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV  161 (291)
T ss_pred             EEEEEEEEEEEEc--CHHHHHHh--cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence            9999999999996  45554444  455888899999999999999999999999888 999999999999999999999


Q ss_pred             EEEEEeeccCCHHHHHHHHHHHHHHHHHHH----h----HHHHHHHHHHHHHHHHHHHHhh-------------------
Q 023988          171 DDVAITHLSYGAEFSRAVEQKQVAQQEAER----S----KFVVMKADQERRAAQLISEATS-------------------  223 (274)
Q Consensus       171 ~~v~I~~i~~p~~~~~ai~~k~~A~qeae~----a----~~~~~~A~~ea~aa~~~~~a~~-------------------  223 (274)
                      .+|.|+++++|+++.+++++++.|+++.++    |    +..+.+|+++++++++++++.+                   
T Consensus       162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~  241 (291)
T COG0330         162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAA  241 (291)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhh
Confidence            999999999999999999999999987544    1    1223456666666666665542                   


Q ss_pred             --hc--CcchhHHHHHHHHHHHHHHhcCCCCEEEecCCCCCc
Q 023988          224 --KF--GLGLIELRRIEASREIAATLARSPHVAYLPGGKNSN  261 (274)
Q Consensus       224 --~~--~~~~~~~~~lea~~~ia~~~~~~~~~i~l~~~~~~~  261 (274)
                        +.  .+.+..+|+++.+.+.+..  ++++++++|++..+.
T Consensus       242 ~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~v~~p~~~~~~  281 (291)
T COG0330         242 LREAPAAPQALAQRYLEELLEIALA--GNSKVVVVPNSAGGA  281 (291)
T ss_pred             cccccchhHHHHHHHHHHHHHHhhC--CCCeEEEecCCccch
Confidence              21  2456677999999887632  345677787775444

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.1e-31  Score=226.09  Aligned_cols=178  Identities=18%  Similarity=0.204  Sum_probs=156.8

Q ss_pred             cEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHh
Q 023988           31 SLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLP  109 (274)
Q Consensus        31 ~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~  109 (274)
                      |+++|+|||+||+ .+||++.+.+.+||+||++||++ ..++|+|.++++.+.+ +.|+|+.++.+++.++|||.  |+.
T Consensus         1 g~~iV~~ge~~Vv-~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~--Dp~   76 (219)
T cd03402           1 GLFVVEPNQARVL-VLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV--DTA   76 (219)
T ss_pred             CeEEECCCeeEEE-EEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc--CHH
Confidence            6899999999999 49999887666999999999985 5889999999988865 89999999999999999995  555


Q ss_pred             HHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-------chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH
Q 023988          110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-------ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA  182 (274)
Q Consensus       110 ~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~  182 (274)
                      .++..  .++++..+.+.+++++|+++|+|+++++++       +|+++++++.+.+++.++.||++|.+++|++++||+
T Consensus        77 ka~~~--v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~  154 (219)
T cd03402          77 KAVFN--VDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP  154 (219)
T ss_pred             HHHHH--cCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence            55333  355577899999999999999999999985       579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 023988          183 EFSRAVEQKQVAQQEAERSKFVVMKADQERRA  214 (274)
Q Consensus       183 ~~~~ai~~k~~A~qeae~a~~~~~~A~~ea~a  214 (274)
                      ++.++|.++|+|+++.++.+...+.|.+-.+.
T Consensus       155 ei~~am~~R~~Ae~~~~Ar~~~~~Ga~~~~~~  186 (219)
T cd03402         155 EIAQAMLQRQQASAIIAARRKIVEGAVGMVEM  186 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            99999999999999988877766666555544

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.97  E-value=2.2e-31  Score=218.03  Aligned_cols=174  Identities=32%  Similarity=0.507  Sum_probs=121.2

Q ss_pred             EEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee---cccCCCcceEEEEEEEEEeecCCCHh
Q 023988           33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS---VSGTKDLQMVNLTLRVLSRPEVSRLP  109 (274)
Q Consensus        33 ~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~tkd~~~v~v~~~v~y~v~~~~~~  109 (274)
                      ++|++||+||++ ++|++.. +++||+||++||+++++.+|++.+++++..   .+.|+|++++.+++++.|++  +++.
T Consensus         1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~   76 (179)
T PF01145_consen    1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP   76 (179)
T ss_dssp             ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred             CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence            579999999996 7999875 899999999999999999999999999998   79999999999999999999  5777


Q ss_pred             HHHHHh--ccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988          110 YIFQHL--GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA  187 (274)
Q Consensus       110 ~~~~~~--g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  187 (274)
                      .++.++  +.++.+..|++.+++++|++++++++++++++|.++.+.+.+.+++.++++|++|.+|.|+++++|+++.++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~  156 (179)
T PF01145_consen   77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA  156 (179)
T ss_dssp             CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred             HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence            888887  357788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Q 023988          188 VEQKQVAQQEAERSKFVVMKADQER  212 (274)
Q Consensus       188 i~~k~~A~qeae~a~~~~~~A~~ea  212 (274)
                      +++++.|+++++  +.+..+|++||
T Consensus       157 i~~~~~a~~~~~--~~~~~~a~~ea  179 (179)
T PF01145_consen  157 IEEKQRAEQEAQ--QAEIERAEAEA  179 (179)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HHHHHHHhhCC
Confidence            999999999886  44455555554

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=3.5e-29  Score=201.42  Aligned_cols=157  Identities=29%  Similarity=0.463  Sum_probs=139.5

Q ss_pred             ccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCH
Q 023988           30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRL  108 (274)
Q Consensus        30 ~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~  108 (274)
                      +|+++|++||+||++ +||++.+ +++||+||++||+++++.+|++.++++.+. .+.|+|++++.+++.+.||+. +..
T Consensus         1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~-d~~   77 (160)
T smart00244        1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL-DPL   77 (160)
T ss_pred             CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc-cHH
Confidence            589999999999995 9999876 899999999999999999999999998876 479999999999999999974 233


Q ss_pred             hHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988          109 PYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA  187 (274)
Q Consensus       109 ~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  187 (274)
                      ..++...|.+  ...+.+.+++++|+++++++++|+++ +|+++++.+.+.+++.++++|+++.++.|+++++|++++++
T Consensus        78 ~~~~~~~~~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~a  155 (160)
T smart00244       78 KAVYRVLDAD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEA  155 (160)
T ss_pred             HHhhhcCCHH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHH
Confidence            3344433322  25799999999999999999999999 79999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 023988          188 VEQK  191 (274)
Q Consensus       188 i~~k  191 (274)
                      +++|
T Consensus       156 i~~k  159 (160)
T smart00244      156 MEQQ  159 (160)
T ss_pred             HHhh
Confidence            9975

prohibitin homologues

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.95  E-value=4.6e-28  Score=200.46  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=138.0

Q ss_pred             ccEEE--ecCCeEEEEEecccceeeceecCeeEEeccccceeEE-EEee-eeeeeeeecccCCCcceEEEEEEEEEeecC
Q 023988           30 SSLYT--VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFI-FDIR-TRPHTFSSVSGTKDLQMVNLTLRVLSRPEV  105 (274)
Q Consensus        30 ~~~~~--V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~-~~~~-~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~  105 (274)
                      +|+..  ||+.+++|+ +||||+. ++++||+||..|+++++.. .+++ .+..+....+.|+||+.+.++.+++||+-.
T Consensus         5 ~n~vi~~VpQ~~a~Vv-ER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~d   82 (301)
T KOG2620|consen    5 TNTVIRFVPQQEAAVV-ERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVD   82 (301)
T ss_pred             ceeeEEeechhHhHHH-HHhhhhh-hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEec
Confidence            45555  999999999 8999986 5999999999999887643 3333 334444455899999999999999999852


Q ss_pred             CCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHH
Q 023988          106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFS  185 (274)
Q Consensus       106 ~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~  185 (274)
                       +.. --..||.++++..|.+++++.+|+.++++++|.++.+|+.++..|.+++++.++.||++|....|+||.+|+.+.
T Consensus        83 -p~~-~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~  160 (301)
T KOG2620|consen   83 -PYA-DDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVK  160 (301)
T ss_pred             -ccc-cccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHH
Confidence             222 123366788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023988          186 RAVEQKQVAQQ  196 (274)
Q Consensus       186 ~ai~~k~~A~q  196 (274)
                      .+|+....|++
T Consensus       161 ~AM~~q~~AeR  171 (301)
T KOG2620|consen  161 RAMNMQNEAER  171 (301)
T ss_pred             HHHHHHHHHHH
Confidence            99987555555

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=165.36  Aligned_cols=169  Identities=13%  Similarity=0.244  Sum_probs=148.8

Q ss_pred             HHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEE-
Q 023988           20 GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTL-   97 (274)
Q Consensus        20 ~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~-   97 (274)
                      ++.+++.+++++++.|++|++||.| |-|.....+.+||+|+.+||+.++..+.++.|+-++... |.|+.|+.+.+|- 
T Consensus        11 ~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrI   89 (322)
T KOG2962|consen   11 AIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRI   89 (322)
T ss_pred             HHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehh
Confidence            3445566777889999999999998 877777779999999999999999999999999888765 9999999999883 


Q ss_pred             EEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEE
Q 023988           98 RVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVA  174 (274)
Q Consensus        98 ~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~  174 (274)
                      .+.-.+.|+.+-....+|+.+|...+|-+.+...++..||.+++.|+|- --++|.++++..|+.++..+  |++|..|+
T Consensus        90 EVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVR  169 (322)
T KOG2962|consen   90 EVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVR  169 (322)
T ss_pred             hhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            2223356667777888899999999999999999999999999999997 48999999999999999987  99999999


Q ss_pred             EeeccCCHHHHHHHH
Q 023988          175 ITHLSYGAEFSRAVE  189 (274)
Q Consensus       175 I~~i~~p~~~~~ai~  189 (274)
                      ++....|+.++..++
T Consensus       170 VTKPkIPEaiRrN~E  184 (322)
T KOG2962|consen  170 VTKPKIPEAIRRNFE  184 (322)
T ss_pred             ecCCCChHHHHHhHH
Confidence            999999999999886

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.87  E-value=1.6e-21  Score=150.63  Aligned_cols=121  Identities=17%  Similarity=0.306  Sum_probs=114.2

Q ss_pred             EEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chH
Q 023988           71 IFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERP  149 (274)
Q Consensus        71 ~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~  149 (274)
                      .+|++.++.+.+..+.|+||+++.++++++|++.+.++..+|.++|.++.+..|.+.+++++|+++++|+++++++ +|+
T Consensus         2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~   81 (124)
T cd03400           2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK   81 (124)
T ss_pred             cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence            3688888888888899999999999999999999888888999998777888999999999999999999999997 799


Q ss_pred             HHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988          150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK  191 (274)
Q Consensus       150 ~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k  191 (274)
                      +|++.+.+.+++.+++||++|.+|.|++++||++++++|++|
T Consensus        82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999976

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.86  E-value=8.4e-21  Score=159.26  Aligned_cols=160  Identities=20%  Similarity=0.204  Sum_probs=134.2

Q ss_pred             hhccEEEecCCeEEEEEecccceeeceecCeeEEec----ccc---------------ceeEEEEeeeeeeee-------
Q 023988           28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLI----PWL---------------QKPFIFDIRTRPHTF-------   81 (274)
Q Consensus        28 ~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~----P~~---------------~~v~~~~~~~~~~~~-------   81 (274)
                      ..+|.++|++||.||++ ++|++.+ +++||.|+.+    |++               ..++.++.+.+....       
T Consensus        12 ~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   89 (207)
T cd03408          12 KNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV   89 (207)
T ss_pred             ccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence            46789999999999997 9999876 6777777655    443               236778877765531       


Q ss_pred             eecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccc-------cccccccchHHHHHHHHhhcCChhHHhhc--hHHHH
Q 023988           82 SSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLE-------YDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVS  152 (274)
Q Consensus        82 ~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~-------~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~  152 (274)
                      .....|+|++++.+++.+.|++  .|+..++.+++..       ..+..+++.+++++|++++++++++++.+  |++|+
T Consensus        90 ~~~~~~~~~v~v~v~~~~~~kI--~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~  167 (207)
T cd03408          90 FGRDSEFGGVPLRAFGTYSLKV--TDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS  167 (207)
T ss_pred             eeeCCccceEEEEeeEEEEEEE--cCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence            1235788999999999999998  5888999988532       35678999999999999999999999986  99999


Q ss_pred             HHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988          153 ALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK  191 (274)
Q Consensus       153 ~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k  191 (274)
                      +.+++.+++.+++||++|.++.|+++++|+++++++.++
T Consensus       168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            999999999999999999999999999999999998864

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.82  E-value=9.2e-19  Score=161.12  Aligned_cols=166  Identities=18%  Similarity=0.210  Sum_probs=137.2

Q ss_pred             cEEEecCCeEEEEEec-c-c-----ceeeceecCeeEEeccccceeEEEEeeeeeeeee-ecccCCCcceEEEEEEEEEe
Q 023988           31 SLYTVDGGERAVLFDR-F-R-----GVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS-SVSGTKDLQMVNLTLRVLSR  102 (274)
Q Consensus        31 ~~~~V~~ge~gVv~~~-~-G-----~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~tkd~~~v~v~~~v~y~  102 (274)
                      .+|++.+...+++.+. | |     +....++.+|+||++|++++..++|++..++++. ..+.|+||.++++++.++.+
T Consensus        33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~  112 (548)
T COG2268          33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVK  112 (548)
T ss_pred             eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEE
Confidence            5665544444444322 1 1     3344689999999999999999999999999988 55899999999999999888


Q ss_pred             ecC--CCHhHHHHHhccc----cccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEe
Q 023988          103 PEV--SRLPYIFQHLGLE----YDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAIT  176 (274)
Q Consensus       103 v~~--~~~~~~~~~~g~~----~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~  176 (274)
                      +.+  .+...+..++|..    +....+...+.+++|.+++++|+.+++++|..|.+.+.+.+..+|.+.|+.++++.|.
T Consensus       113 i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~  192 (548)
T COG2268         113 IGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAIN  192 (548)
T ss_pred             ecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeec
Confidence            864  3445566667744    5667788999999999999999999999999999999999999999999999999999


Q ss_pred             eccCC-------HHHHHHHHHHHHHHH
Q 023988          177 HLSYG-------AEFSRAVEQKQVAQQ  196 (274)
Q Consensus       177 ~i~~p-------~~~~~ai~~k~~A~q  196 (274)
                      ++..+       ..|.++...+.+++-
T Consensus       193 ~i~d~~~~~~d~~~yLda~G~r~i~qv  219 (548)
T COG2268         193 DINDTSKENQDPNNYLDALGRRRIAQV  219 (548)
T ss_pred             ccccccccccChhhhhhhcChHHHHHH
Confidence            99999       899999987755554

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.74  E-value=7.5e-18  Score=130.77  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=103.2

Q ss_pred             EEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCC--HhHHHHHhc---cccccccccchHHHHHHHHhhcCChhHHh
Q 023988           72 FDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSR--LPYIFQHLG---LEYDEKVLPSIGNEVLKAVVAQFNADQLL  145 (274)
Q Consensus        72 ~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~--~~~~~~~~g---~~~~~~~i~~~~~~~lr~~~~~~~~~ei~  145 (274)
                      +|++.+.++++.+ +.|+|++++.++++++|||.+..  ...++.+++   .+..+..+.+.+++++|+++|+++++|++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~   81 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY   81 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5788889998875 89999999999999999996433  223334443   24578889999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023988          146 TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ  190 (274)
Q Consensus       146 ~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~  190 (274)
                      ++|++|.+++.+.++..+++||++|.++.|++|++|++|.+++.+
T Consensus        82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~  126 (128)
T cd03399          82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD  126 (128)
T ss_pred             HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence            999999999999999999999999999999999999999888754

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.70  E-value=9.5e-16  Score=132.11  Aligned_cols=162  Identities=14%  Similarity=0.135  Sum_probs=135.8

Q ss_pred             EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhH
Q 023988           32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPY  110 (274)
Q Consensus        32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~  110 (274)
                      |++..+.+..++ +.+|--.......|  |+||| +++.++|+.+.++++..+ +.|+.|+|+.+...++..++.+++..
T Consensus         2 f~~~~~~~~l~i-tg~g~~~~~lv~~~--wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    2 FKVAGASQYLAI-TGGGIEDIKLVKKS--WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CccCCccceEEe-ecccccCceecccc--eeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            556678888887 56554333344445  55577 999999999999999998 89999999999999999998888655


Q ss_pred             HHHH-----hc--cccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH-
Q 023988          111 IFQH-----LG--LEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA-  182 (274)
Q Consensus       111 ~~~~-----~g--~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~-  182 (274)
                      +.-.     +|  .+....++...+....|.+++++|++|+|.+|.+|...+++..+.++..+||.|.+.+|+|+...+ 
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g  157 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG  157 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence            5443     24  355677788999999999999999999999999999999999999999999999999999998888 


Q ss_pred             -HHHHHHHHHHHHHHH
Q 023988          183 -EFSRAVEQKQVAQQE  197 (274)
Q Consensus       183 -~~~~ai~~k~~A~qe  197 (274)
                       +|..++.+++.|+..
T Consensus       158 ~~YlssLGka~taev~  173 (428)
T KOG2668|consen  158 HEYLSSLGKATTAEVA  173 (428)
T ss_pred             hHHHHHhhhHHHHHHH
Confidence             699999988777653

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.62  E-value=4.7e-15  Score=112.90  Aligned_cols=107  Identities=25%  Similarity=0.306  Sum_probs=94.4

Q ss_pred             ecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHH
Q 023988           83 SVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKR  162 (274)
Q Consensus        83 ~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~  162 (274)
                      ..+.|+|++++.+++++.|++.+.. ..++...+.++ ...+.+.+.+++|+++++++++++.++|++|++.+++.+...
T Consensus        14 ~~~~t~d~~~i~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~   91 (121)
T cd02106          14 QEVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQED   91 (121)
T ss_pred             ceEEecCCCEEEEEEEEEEEEeCHH-HHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHH
Confidence            3478999999999999999997432 34544433333 678999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988          163 ARDFNIVLDDVAITHLSYGAEFSRAVEQK  191 (274)
Q Consensus       163 l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k  191 (274)
                      +++||++|.+|.|+++++|+++.++++++
T Consensus        92 ~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          92 LDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            99999999999999999999999999875

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.47  E-value=2.7e-12  Score=107.48  Aligned_cols=161  Identities=18%  Similarity=0.225  Sum_probs=127.4

Q ss_pred             hccEEEecCCeEEEEEecccceeeceecCeeEEe-------------------ccccceeEEEEeeeee-eeeee----c
Q 023988           29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFL-------------------IPWLQKPFIFDIRTRP-HTFSS----V   84 (274)
Q Consensus        29 ~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~-------------------~P~~~~v~~~~~~~~~-~~~~~----~   84 (274)
                      ..|-.+|++||.+|++ .-|++.+ +.+||.|-.                   .||-..|+-++++... ..+..    .
T Consensus        13 ~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~   90 (211)
T PF13421_consen   13 NGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP   90 (211)
T ss_pred             CCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence            4677899999999997 8899887 899999963                   3555567777777653 23221    1


Q ss_pred             ccCCCcceEEEEEEEEEeecCCCHhHHHHHh-c------cccccccccchHHHHHHHHhh--cCChhHHhhchHHHHHHH
Q 023988           85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHL-G------LEYDEKVLPSIGNEVLKAVVA--QFNADQLLTERPHVSALV  155 (274)
Q Consensus        85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~-g------~~~~~~~i~~~~~~~lr~~~~--~~~~~ei~~~R~~i~~~i  155 (274)
                      ....+-..|.+.+...|.++..|+..|++++ |      .+..+..+++.+.+.+.+.++  ++++.++-++-.+|++.+
T Consensus        91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~  170 (211)
T PF13421_consen   91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL  170 (211)
T ss_pred             ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3344433777777778888778999999986 3      233456677777777777777  479999999999999999


Q ss_pred             HHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988          156 RESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK  191 (274)
Q Consensus       156 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k  191 (274)
                      ++.++..++.+|+++.++.|.+|++|++.++.+.++
T Consensus       171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~  206 (211)
T PF13421_consen  171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR  206 (211)
T ss_pred             HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.78  E-value=2.5e-07  Score=78.54  Aligned_cols=161  Identities=14%  Similarity=0.083  Sum_probs=119.0

Q ss_pred             hccEEEecCCeEEEEEecccceeeceecCeeEE-------------------eccccceeEEEEeeeee-eeeee----c
Q 023988           29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHF-------------------LIPWLQKPFIFDIRTRP-HTFSS----V   84 (274)
Q Consensus        29 ~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~~~----~   84 (274)
                      -.|...|.|++-++.+ .-|++.+..-++|.|-                   ..|+-+.|+.++++.+. +.+..    +
T Consensus        38 nGs~l~Vrp~qmamfv-n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin  116 (345)
T COG4260          38 NGSILHVRPNQMAMFV-NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN  116 (345)
T ss_pred             cCcEEEEecCceEEEE-cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence            4567889999999986 6677776555588762                   24666778888887766 44432    2


Q ss_pred             ccC-CCcceEEEEEEEEEeecCCCHhHHHHHhc-------cccccccccchHHHHHHHHhhcC--ChhHHhhchHHHHHH
Q 023988           85 SGT-KDLQMVNLTLRVLSRPEVSRLPYIFQHLG-------LEYDEKVLPSIGNEVLKAVVAQF--NADQLLTERPHVSAL  154 (274)
Q Consensus        85 ~~t-kd~~~v~v~~~v~y~v~~~~~~~~~~~~g-------~~~~~~~i~~~~~~~lr~~~~~~--~~~ei~~~R~~i~~~  154 (274)
                      ... .++-.+-+.+.-.|.+...|+..++..+.       .++.+..+-+.+..++...+.++  .+..+-++--+++..
T Consensus       117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~  196 (345)
T COG4260         117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY  196 (345)
T ss_pred             cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence            333 45445555555556666678888988864       23455666777788888877765  444555678899999


Q ss_pred             HHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023988          155 VRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ  190 (274)
Q Consensus       155 i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~  190 (274)
                      +++.|.+++..+|+.|++|+|-.|++|++.++.|..
T Consensus       197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~  232 (345)
T COG4260         197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINM  232 (345)
T ss_pred             HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHh
Confidence            999999999999999999999999999999999974

>PTZ00491 major vault protein; Provisional

Probab=97.82  E-value=0.0023  Score=62.78  Aligned_cols=156  Identities=14%  Similarity=0.031  Sum_probs=98.9

Q ss_pred             EEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeee------eee-----e-------eecccCCCcceEE
Q 023988           33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTR------PHT-----F-------SSVSGTKDLQMVN   94 (274)
Q Consensus        33 ~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~------~~~-----~-------~~~~~tkd~~~v~   94 (274)
                      +.||-+...-+|+.--+....+.+|-+++.-|- +.+..+++..-      .+.     .       -..+-|+|...+.
T Consensus       465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~  543 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA  543 (850)
T ss_pred             EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence            567777766665433333456899999999997 56666554321      111     0       1236799998888


Q ss_pred             EEEEEEEeec--CCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH-HHHHHHHHHHHH--------Hh
Q 023988           95 LTLRVLSRPE--VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP-HVSALVRESLIK--------RA  163 (274)
Q Consensus        95 v~~~v~y~v~--~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~--------~l  163 (274)
                      +..+.+|...  ++|+...-.-|...++-..+-..+.+.+|..++..+++++..+-. -|.+.+.....+        .+
T Consensus       544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F  623 (850)
T PTZ00491        544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF  623 (850)
T ss_pred             EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence            8877776654  445532222233333333366788999999999999999997533 344444442222        23


Q ss_pred             hcCCeEEEEEEEeeccCCHH-HHHHHH
Q 023988          164 RDFNIVLDDVAITHLSYGAE-FSRAVE  189 (274)
Q Consensus       164 ~~~Gi~v~~v~I~~i~~p~~-~~~ai~  189 (274)
                      ...|+.|.+|.|+++.+-+. .+++++
T Consensus       624 ~~N~lvit~VDvqsvEpvD~~tr~~Lq  650 (850)
T PTZ00491        624 PANNLVITNVDVQSVEPVDERTRDSLQ  650 (850)
T ss_pred             ccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence            56689999999999987654 555553

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=97.44  E-value=0.0019  Score=55.18  Aligned_cols=107  Identities=18%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhh
Q 023988           85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR  164 (274)
Q Consensus        85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~  164 (274)
                      ...|||..+.+.+.+..|-+   ...+   +|....++.+-..-+..+..+-|.-+-.+++.+.+.|++.+.+.   -|+
T Consensus       134 aVAkdGIql~~kArVTVRaN---i~rL---VGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~k---gLD  204 (316)
T PF12127_consen  134 AVAKDGIQLKVKARVTVRAN---IDRL---VGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLEK---GLD  204 (316)
T ss_pred             hhhcCCeEEEEEEEEEEEec---HHHh---ccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHhh---CCC
Confidence            46899999999988877753   4344   56666677777777777777777788899999999999877654   344


Q ss_pred             c-CCeEEEEEEEeeccCCHHHHHHHH------HHHHHHHHHHH
Q 023988          165 D-FNIVLDDVAITHLSYGAEFSRAVE------QKQVAQQEAER  200 (274)
Q Consensus       165 ~-~Gi~v~~v~I~~i~~p~~~~~ai~------~k~~A~qeae~  200 (274)
                      . --+++.|+.|-|++.-+.+-..++      +|..||.+||.
T Consensus       205 agTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEe  247 (316)
T PF12127_consen  205 AGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEE  247 (316)
T ss_pred             cCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHH
Confidence            2 358999999999999987655443      45555555544

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.25  E-value=0.0039  Score=53.04  Aligned_cols=107  Identities=19%  Similarity=0.272  Sum_probs=78.2

Q ss_pred             ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhh
Q 023988           85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR  164 (274)
Q Consensus        85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~  164 (274)
                      ...|||..+.+.+.+..|-   +...+   +|..-.++.+-..-+..+..+-|.-+-.+++.+.+.|++.+.   .+-|+
T Consensus       139 aVAkdGIql~~kARVTVRa---Ni~rL---VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL---~kGLD  209 (316)
T PRK13665        139 AVAKDGIEVKAKARVTVRA---NIDRL---VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVL---SKGLD  209 (316)
T ss_pred             hhcccCeEEEEEEEEEeeh---hHHHH---hCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHHH---hccCC
Confidence            4689999999988877663   34444   566666777777777777777788888999999999986554   34454


Q ss_pred             c-CCeEEEEEEEeeccCCHHHHHHHH------HHHHHHHHHHH
Q 023988          165 D-FNIVLDDVAITHLSYGAEFSRAVE------QKQVAQQEAER  200 (274)
Q Consensus       165 ~-~Gi~v~~v~I~~i~~p~~~~~ai~------~k~~A~qeae~  200 (274)
                      . --+++.|+.|-|++.-+.+-..++      +|..||.+||.
T Consensus       210 agTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEe  252 (316)
T PRK13665        210 AGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEE  252 (316)
T ss_pred             cCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHH
Confidence            3 258999999999999988755443      45556655553

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=96.26  E-value=0.2  Score=40.07  Aligned_cols=80  Identities=13%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             cceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC
Q 023988           90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN  167 (274)
Q Consensus        90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G  167 (274)
                      +-...+.+.+.|++.......-...         =.+.+++.+...+++.+.+|+.+  .++++..++++.++..+..-+
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~~el~~---------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~  146 (159)
T COG1580          76 PKDRYVKIAITLEVANKALLEELEE---------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ  146 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHHHHHHH---------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence            4456677777888864332222221         24789999999999999999998  699999999999999998765


Q ss_pred             eEEEEEEEeecc
Q 023988          168 IVLDDVAITHLS  179 (274)
Q Consensus       168 i~v~~v~I~~i~  179 (274)
                       .|.+|.++++.
T Consensus       147 -~V~dV~fT~fi  157 (159)
T COG1580         147 -VVKDVLFTNFI  157 (159)
T ss_pred             -eeEEEeeehhh
Confidence             88888887754

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=94.90  E-value=0.97  Score=36.78  Aligned_cols=77  Identities=13%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             ceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEE
Q 023988           91 QMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVL  170 (274)
Q Consensus        91 ~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v  170 (274)
                      ....+.+++.|...  +. .+..++     +. =.+.+++.+...+++.+.+|+. .++++.+++.+++|..|.+-  .|
T Consensus       101 ~r~~vki~l~~e~~--d~-~l~~EL-----~~-r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV  168 (181)
T PRK06654        101 KTFVVKLALGYAEN--NK-NILNEL-----GR-RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EI  168 (181)
T ss_pred             ceEEEEEEEEEEcC--CH-HHHHHH-----Hh-ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ce
Confidence            34446666666653  22 232221     22 2478999999999999999999 88999999999999988864  46


Q ss_pred             EEEEEeecc
Q 023988          171 DDVAITHLS  179 (274)
Q Consensus       171 ~~v~I~~i~  179 (274)
                      .+|.+++..
T Consensus       169 ~~VYFTeFv  177 (181)
T PRK06654        169 KDIAFTQID  177 (181)
T ss_pred             EEEEEEEEE
Confidence            666666543

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=94.69  E-value=1.4  Score=35.46  Aligned_cols=52  Identities=4%  Similarity=-0.012  Sum_probs=44.3

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++.+.++..+.+-  .|.+|.++++
T Consensus       110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F  163 (166)
T PRK12785        110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV  163 (166)
T ss_pred             chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence            4788999999999999999987  69999999999999988763  4777777764

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.61  E-value=0.54  Score=39.24  Aligned_cols=106  Identities=19%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             cCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhc
Q 023988           86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARD  165 (274)
Q Consensus        86 ~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~  165 (274)
                      ..-||..+...+.+..|   .+..++   +|..-.++.+...-+..+..+-++..-.+++.+.+.|++.+.+   +-|+.
T Consensus       139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~  209 (328)
T COG4864         139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS  209 (328)
T ss_pred             eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence            45678777776655544   333344   4555555656555555555566667778888888888876644   23432


Q ss_pred             -CCeEEEEEEEeeccCCHHHH------HHHHHHHHHHHHHHH
Q 023988          166 -FNIVLDDVAITHLSYGAEFS------RAVEQKQVAQQEAER  200 (274)
Q Consensus       166 -~Gi~v~~v~I~~i~~p~~~~------~ai~~k~~A~qeae~  200 (274)
                       ..+++.++.|-|++..+.+-      ++-.+|..||..++.
T Consensus       210 gtafeilsidiadvdigkniga~lqteqa~adk~iaqakaee  251 (328)
T COG4864         210 GTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEE  251 (328)
T ss_pred             CceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHH
Confidence             24789999999988887653      444456666665543

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=91.54  E-value=3.7  Score=29.56  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=44.5

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i  178 (274)
                      .+.+++.+...+++++.+++.+  .++.+.+++.+.+++.+.+-  .|.+|.++++
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            4689999999999999999996  69999999999999999654  4777777764

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=89.71  E-value=1.3  Score=33.28  Aligned_cols=95  Identities=13%  Similarity=0.064  Sum_probs=58.8

Q ss_pred             ccCCCcceEEEEEEEEEeecC--CCHhHHHHHhc-cccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHH-----
Q 023988           85 SGTKDLQMVNLTLRVLSRPEV--SRLPYIFQHLG-LEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVR-----  156 (274)
Q Consensus        85 ~~tkd~~~v~v~~~v~y~v~~--~~~~~~~~~~g-~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~-----  156 (274)
                      +-|+|-..+.+..+..|....  .++..--+-|+ +++. ..+-..+.+.+|..++..+.+++..+-..|-....     
T Consensus        11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFV-Gd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~   89 (118)
T PF11978_consen   11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFV-GDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE   89 (118)
T ss_dssp             EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred             EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchH-HHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence            568898888888777666543  33433334345 3443 33567888999999999999999975433322211     


Q ss_pred             -HHHHH--HhhcCCeEEEEEEEeeccC
Q 023988          157 -ESLIK--RARDFNIVLDDVAITHLSY  180 (274)
Q Consensus       157 -~~l~~--~l~~~Gi~v~~v~I~~i~~  180 (274)
                       ...+.  .+..-|+.|.+|.|+++.|
T Consensus        90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   90 NGEVRDGLRFPANNLVITSVDVQSVEP  116 (118)
T ss_dssp             -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred             CCCccceeEEcCCCeEEEEEeeeEecc
Confidence             11111  2346699999999998875

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=88.27  E-value=5.4  Score=31.18  Aligned_cols=52  Identities=13%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus        86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            4689999999999999999997  6999999999999998876 4 5777777654

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=86.06  E-value=12  Score=29.03  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=45.3

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.++++..+.+- | -.|++|.+++.
T Consensus        77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            3789999999999999999987  79999999999999999743 2 25777777664

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=84.32  E-value=14  Score=29.49  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC--eEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN--IVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++.+.++..+..-+  -.|.+|.++++
T Consensus       102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            3679999999999999999987  699999999999999986532  35777777664

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=83.17  E-value=12  Score=30.57  Aligned_cols=52  Identities=10%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.+.++..+.+-  .|.+|.++++
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F  179 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF  179 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence            4679999999999999999997  68999999999999999763  5677776654

>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=80.08  E-value=21  Score=28.72  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=43.3

Q ss_pred             cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023988          125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL  178 (274)
Q Consensus       125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i  178 (274)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++.++++..+... | -.|.+|.++++
T Consensus       110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f  167 (170)
T PRK05696        110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF  167 (170)
T ss_pred             hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence            4689999999999999999997  68889998888888877643 2 25777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 38/283 (13%), Positives = 72/283 (25%), Gaps = 92/283 (32%)

Query: 43  LFDRFR----GVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKD-LQMVN--L 95
           LF         ++ + + E       +L  P   + R            +D L   N   
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 96  TLRVLSRPE-VSRL----------PYIFQH---------LGLE--YDEKVLP-------- 125
               +SR +   +L            +            + L+     KV          
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 126 -SIGN--------EVLKAVVAQFNADQLLTERPHVSALVR---ESLIKRARDF------- 166
            ++ N        E+L+ ++ Q   D   T R   S+ ++    S+    R         
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 167 N--IVLDDV----------------AITHLSYGAEFSRAVEQKQVAQQEAER-------- 200
           N  +VL +V                  T      +F  A     ++              
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 201 ---SKFVVMKADQERRAAQLISEATSKFGLGLI-ELRRIEASR 239
               K++  +     R         +   L +I E  R   + 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT----NPRRLSIIAESIRDGLAT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.96
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.91
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.84
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.75
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.03

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.96  E-value=3.4e-29  Score=206.05  Aligned_cols=173  Identities=21%  Similarity=0.252  Sum_probs=147.0

Q ss_pred             ccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhH
Q 023988           65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQ  143 (274)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~e  143 (274)
                      |++++.++|+|.++++++.+ +.|+|+++|.++++++|||.  ++..++..  ..++...+.+.+++++|+++|+++++|
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            56899999999999999874 89999999999999999995  56666554  334455688999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 023988          144 LLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATS  223 (274)
Q Consensus       144 i~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~  223 (274)
                      ++++|++|++.+++.+++.+++|||+|.+|.|++|+||+++.++|++++.|+++++   +.+.+|++|+++++.++++..
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~---A~i~~Aege~~a~~~~a~a~~  154 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERR---ARITLAEAERQAAEKLREAAE  154 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877776553   468899999999999998864


Q ss_pred             h--cCcchhHHHHHHHHHHHHHH
Q 023988          224 K--FGLGLIELRRIEASREIAAT  244 (274)
Q Consensus       224 ~--~~~~~~~~~~lea~~~ia~~  244 (274)
                      .  .+|.++++|++|++.+++..
T Consensus       155 ~~~~~~~~l~lr~le~~~~ia~~  177 (188)
T 3bk6_A          155 IISEHPMALQLRTLQTISDVAGD  177 (188)
T ss_dssp             HHHHCTTHHHHHHTTC-------
T ss_pred             HHHhCHHHHHHHHHHHHHHHhcC
Confidence            2  24999999999999998754

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.91  E-value=1.1e-24  Score=169.13  Aligned_cols=130  Identities=17%  Similarity=0.229  Sum_probs=101.0

Q ss_pred             EeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcC
Q 023988           61 FLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQF  139 (274)
Q Consensus        61 ~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~  139 (274)
                      ++.||++++.++|+|.++++++.+ +.|+|+..+.+++.++||+.  |+..++.+  .++++..+...+++++|+++|++
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~~--v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVAN--ITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEe--ehHHhHhh--hhhHHHHHHHHHHHHHHHHhccc
Confidence            678999999999999999999876 89999999999999999995  67766654  56677789999999999999999


Q ss_pred             ChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023988          140 NADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVA  194 (274)
Q Consensus       140 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A  194 (274)
                      ++++++++|++|++++++.+++.+++||++|.+|.|++++||+++.++|++++.|
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999875443

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.84  E-value=1.7e-22  Score=158.68  Aligned_cols=130  Identities=11%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             ccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHH---HHHh-cc--ccccccccchHHHHHHHHhh
Q 023988           65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYI---FQHL-GL--EYDEKVLPSIGNEVLKAVVA  137 (274)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~---~~~~-g~--~~~~~~i~~~~~~~lr~~~~  137 (274)
                      |++++.++|+|.++++++.+ +.|+|+.++.+|+.++|||.. ++..+   ...+ |.  +..+..+.+.+++++|+++|
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG   81 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG   81 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999987 899999999999999999962 23222   2222 32  34567788999999999999


Q ss_pred             cCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023988          138 QFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQ  195 (274)
Q Consensus       138 ~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~  195 (274)
                      +++++|++++|++|.+.+++.+++.+++||++|.+|.|+||++|+++.++|++++.|+
T Consensus        82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae  139 (143)
T 1win_A           82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999998754443

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.75  E-value=6.5e-19  Score=132.68  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=97.8

Q ss_pred             EEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH
Q 023988           71 IFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP  149 (274)
Q Consensus        71 ~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~  149 (274)
                      ++|+|.++++++. .+.|+|++++.+++.++||+.  |+..++.+++  ..+..+.+.+++++|+++|+++++|++++|+
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~--dp~~~~~~v~--~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~   79 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAVYNVS--DFLMAIVKLAQTNLRAIIGEMELDETLSGRD   79 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEES--CTTTCTTTTT--HHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEEC--CHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence            5789999999887 489999999999999999995  4556666543  4556699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHH
Q 023988          150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAE  183 (274)
Q Consensus       150 ~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~  183 (274)
                      +|++.+++.+++.+++||++|.+|.|++++||++
T Consensus        80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.03  E-value=0.00056  Score=65.75  Aligned_cols=156  Identities=12%  Similarity=0.004  Sum_probs=99.9

Q ss_pred             EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeee------ee-----ee-------eeecccCCCcceE
Q 023988           32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRT------RP-----HT-------FSSVSGTKDLQMV   93 (274)
Q Consensus        32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~------~~-----~~-------~~~~~~tkd~~~v   93 (274)
                      .|.||.+...-+|+.--|....+.+|-+.+.-|- +.+..+++.-      ..     +.       .-..+-|+|...+
T Consensus       459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL  537 (861)
T 2zuo_A          459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL  537 (861)
T ss_dssp             EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred             EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence            4678888888887522233446889999888885 4444444221      11     11       1124789999999


Q ss_pred             EEEEEEEEeec---CCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHH-HHH------------
Q 023988           94 NLTLRVLSRPE---VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSAL-VRE------------  157 (274)
Q Consensus        94 ~v~~~v~y~v~---~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~-i~~------------  157 (274)
                      .+..+.+|...   +.++...-.-|...++-.-+-..+.|.+|..+++.+++++..+-..|-.. +.-            
T Consensus       538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~  617 (861)
T 2zuo_A          538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT  617 (861)
T ss_dssp             EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred             EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence            99888888774   34455444445543333336678899999999999999999764444221 111            


Q ss_pred             ---HHH--HHhhcCCeEEEEEEEeeccCCHH-HHHHH
Q 023988          158 ---SLI--KRARDFNIVLDDVAITHLSYGAE-FSRAV  188 (274)
Q Consensus       158 ---~l~--~~l~~~Gi~v~~v~I~~i~~p~~-~~~ai  188 (274)
                         ..+  -.+...|+.|.+|.|+++.+-+. .++++
T Consensus       618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L  654 (861)
T 2zuo_A          618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL  654 (861)
T ss_dssp             ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred             cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence               011  12456699999999999987654 55555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	1e-09

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 14/117 (11%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 87  TKDLQMVNLTLRVLSRPE-----VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNA 141
           T +   + +T     +       ++     F    ++  + V+       L++++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 142 DQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEA 198
           +Q+  +R   + LVRE          I +    I  +    ++  ++ + Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.8

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.4e-21  Score=148.70  Aligned_cols=127  Identities=12%  Similarity=0.121  Sum_probs=110.6

Q ss_pred             eeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHHH--H-hc--cccccccccchHHHHHHHHhhcCCh
Q 023988           68 KPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ--H-LG--LEYDEKVLPSIGNEVLKAVVAQFNA  141 (274)
Q Consensus        68 ~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~--~-~g--~~~~~~~i~~~~~~~lr~~~~~~~~  141 (274)
                      ++.++|++.++++++.+ +.|+||+++.++++++||+.++.....+.  . ++  .+..+..+++.+++++|++++++++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            56789999999999987 78999999999999999997543222221  1 22  3557788999999999999999999


Q ss_pred             hHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023988          142 DQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVA  194 (274)
Q Consensus       142 ~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A  194 (274)
                      ++++++|++|.+.+.+.+++.+++||++|.++.|+||++|++|.++|.++++|
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999876554