Citrus Sinensis ID: 023992

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEEEccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEccccEEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEEEEccccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccccccEcEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mgsnpapfsdvgKRAKDLlnkdydfghkftlsvpsstglglsatglkkdeifigdinsvyksgnttvdVKVDtyssvstkvtmvdilpstkaalsfripdhksgkldlqylhphaaidssiglnptpllelsatigskelvlggevgfdtASASFIKYtagiglnkpdFSAALLLADKGQALKasyihavdpftSVAAEMTHRFstyqnsftigsshlvdplTLVKTRLSDGGKFAVQFQrewrpkslVTVSAEYDSKAINSAPKMGLAIALKP
Flexible Loop (DISEMBL)
mgsnpapfsdvGKRAKDLLNKDYDFGHKftlsvpsstglgLSATGLKKDEIFIGDINsvyksgnttvdVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKfavqfqrewrpkslVTVSAEydskainsapkmglaialkp
Low Complexity Region (SEG)
MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Disordered region (IsUnstruct)
*****************LLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEY*******************
Disordered Region (DISOPRED)
**SNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Disordered Region (DISEMBL)
*********DVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Disordered Region (DISPRO)
****PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9FKM2	274	Mitochondrial outer membr	yes	no	1.0	1.0	0.660	1e-106
Q10S27	276	Mitochondrial outer membr	yes	no	1.0	0.992	0.608	8e-93
Q84P97	277	Mitochondrial outer membr	no	no	0.985	0.974	0.492	9e-75
P42056	276	Mitochondrial outer membr	N/A	no	1.0	0.992	0.481	2e-72
P42054	276	Outer plastidial membrane	N/A	no	1.0	0.992	0.456	2e-70
P42055	276	Mitochondrial outer membr	N/A	no	1.0	0.992	0.456	3e-69
Q6K548	274	Mitochondrial outer membr	no	no	0.985	0.985	0.461	5e-68
Q9FJX3	276	Mitochondrial outer membr	no	no	1.0	0.992	0.456	1e-67
P46274	275	Mitochondrial outer membr	N/A	no	0.985	0.981	0.474	4e-66
Q9SMX3	274	Mitochondrial outer membr	no	no	1.0	1.0	0.434	3e-65

>sp|Q9FKM2|VDAC4_ARATH Mitochondrial outer membrane protein porin 4 OS=Arabidopsis thaliana GN=VDAC4 PE=2 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/274 (66%), Positives = 226/274 (82%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS+PAPF+D+GK+AKDLLNKDY F HKFTL++ S+TG    ATGLKKD+ F GDI+++Y
Sbjct: 1   MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K  NT VD+K+D++SSVSTKVT+ ++LPS KA +SF+IPDHKSGKLD+QY+HPHA ++SS
Sbjct: 61  KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNPTPLL+LSATIGS+ + LGGEV FDTAS+S  KY AGIG N    SAAL+L DKG+
Sbjct: 121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
           +L+A+Y+H V+P TS  AE+  RFS Y NSFT+GSSH VD  T+VKTR S+ GK  +  Q
Sbjct: 181 SLRATYVHTVNPTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQ 240

Query: 241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           REWRPKS +T SAEYDSKA+ S+PK+GLA+ALKP
Sbjct: 241 REWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant growth and development at the vegetative and reproductive stages. Is important for leaf and pollen development and mitochondrial membrane potential steady state. May be involved in disease resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10S27|VDAC6_ORYSJ Mitochondrial outer membrane protein porin 6 OS=Oryza sativa subsp. japonica GN=VDAC6 PE=2 SV=1

 Score =  340 bits (871), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 168/276 (60%), Positives = 210/276 (76%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M   PAPF ++GKRAKDLL KDY+F  KF+L+  S++GLGL+ATG+K DE+FIGDI + +
Sbjct: 1   MSKGPAPFLNIGKRAKDLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQTQH 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSG TTVDVK+D+ S VST VT+ + L   K + SFR+PD KSGKLDLQYLH H A++S+
Sbjct: 61  KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGL  TPL+EL+ATIG+ EL  G EVGFD+ SAS  KY +GI  NK DFSAA+LLADKG+
Sbjct: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180

Query: 181 ALKASYIHAVDPFT--SVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
            LKASYIH  +     +VAAE+TH+  T +N FTIGSSH +D  TL+KTR S+GGK  V 
Sbjct: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            Q EWRPKS V++SAEYD K ++S  + G+AIALKP
Sbjct: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84P97|VDAC5_ORYSJ Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica GN=VDAC5 PE=2 SV=1

 Score =  280 bits (715), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 197/272 (72%), Gaps = 2/272 (0%)

Query: 5   PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGN 64
           P  FSD+GKRAKDLL KDY +  K T+S  SS+G+GL++T +KK  ++  D++SVYK  +
Sbjct: 6   PGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSVYKYKS 65

Query: 65  TTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLN 124
           T VDVKVDT S++ST +T+ D+LPSTK   S ++PD+ SGK+++QY H +A+  +++G+ 
Sbjct: 66  TLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGMK 125

Query: 125 PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKA 184
           P+P++E S T G++ L  G E GFDTA+  F KY+A IG+ KPD+ AA++LADKG  +K 
Sbjct: 126 PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKV 185

Query: 185 SYIHAVD--PFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQRE 242
           S ++ +D    +SV AE+T R ST +N+ T+G  + VDP T VK RL++ GK A   Q E
Sbjct: 186 SGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHE 245

Query: 243 WRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            +PKS++T+S E+D+KA++  PK GLA+AL+P
Sbjct: 246 VKPKSVLTISGEFDTKALDRPPKFGLALALRP 277

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/276 (48%), Positives = 189/276 (68%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M   P  +SD+GK+A+DLL +DY   HKFT++  S+TG+ ++A+GLKK E+F+ D+++  
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K+ N T DVKVDT S+V T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++S
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +  D  A+L L DKG 
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 ALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
            + ASY H V P   T+V AE+TH FS+ +N+ TIG+ HL+DPLT VK R++  GK +  
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            Q EWRPKSL T+S E D++AI  + K+GLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 187/276 (67%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M   P  ++D+GK+A+DLL KDY    KFT+S  S TG+ ++++G KK E+F+GD+N+  
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K+ N T D+KVDT S++ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           +GL   P++  S+ IG+  L  G ++ FDT      K  A +   K D   +L L +KG 
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180

Query: 181 ALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
            L ASY HA++P   T+V  +++HRFST +N+FT+G+ H +DPLT VK R+++ GK +  
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            Q EWRPKSL+T+S+E D+KAI  + K+GL++ALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 183/276 (66%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MG  P  ++++GK+A+DLL KDY   HKF+++  S TG+ ++++G KK ++F+ D+N+  
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K+ N T D+KVDT S++ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           +GL   P++  S  +G+  + LG +V FDT +  F K  AG+     D  A+L L +KG 
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 ALKASYIHAVDPFTS--VAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
            L ASY H V P TS  V AE+ H FST +N  T+G+ H +DPLT VK R+++ GK +  
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            Q EWRPKSL TVS E D+K+++   K GLA+ALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/271 (46%), Positives = 186/271 (68%), Gaps = 1/271 (0%)

Query: 5   PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGN 64
           P  + ++GK+A+DLL +DY   HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N
Sbjct: 4   PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKN 63

Query: 65  TTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLN 124
            TVDVK ++ S+V T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL 
Sbjct: 64  ITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLT 123

Query: 125 PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKA 184
            +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  +  D  A+L L +KG +L A
Sbjct: 124 ASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTA 183

Query: 185 SYIHAVD-PFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREW 243
           SY H V+   T+V AE+TH FS+ +NS T G+ H +DPLT+VK R ++ GK +   Q EW
Sbjct: 184 SYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEW 243

Query: 244 RPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           RPKS+ T+SAE D+KAI+ + K+G+A+ALKP
Sbjct: 244 RPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 183/276 (66%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M   P  F+D+GK+AKDLL +DY+   KF++S  S++G+ L++T LKK  +   D+ + Y
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K  N   DVK+DT SSV T VT+ +ILPSTKA  SF++PD+ S KL++QY H HA + ++
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
             L   PL++++AT+GS  +  G E G+DT S +F KY AGI + KPD   +++L DKG 
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 ALKASYIHAVDPFTSVAA--EMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
           +LKASY+H  D F   AA  E+  +FST +N+ T+G  + +D  T VK +L++ G     
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            Q E  P+SLVTVS+E D+KA+   P+ GL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant growth and development at the vegetative and reproductive stages. Is important for leaf and pollen development and mitochondrial membrane potential steady state. May be involved in ABA-mediated early seedling development and disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1

 Score =  251 bits (641), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 182/272 (66%), Gaps = 2/272 (0%)

Query: 5   PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGN 64
           P  +S +GK+AKDLL +DY   HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N
Sbjct: 4   PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKN 63

Query: 65  TTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGL 123
            TVDVK ++ S+V T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL
Sbjct: 64  ITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGL 123

Query: 124 NPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALK 183
              P++ LS   G+  L +G +V  DTA+ +F KY A +     D  A+L L +KG +L 
Sbjct: 124 TANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLT 183

Query: 184 ASYIHAVDPF-TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQRE 242
           ASY H V+   T+V AE+TH FS+ +NS T G+ H +DPLTLVK R+++ GK +   Q E
Sbjct: 184 ASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHE 243

Query: 243 WRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           + PKSL T+SAE D+KAI  + K+G+AIALKP
Sbjct: 244 FMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Triticum aestivum (taxid: 4565)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 177/274 (64%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M   P  ++++GK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K+ N T DVKV T SS+ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           +G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
            L ASY   V P T V AE++H F+T +N+ T+G+ H +DPLT VK R+++ G      Q
Sbjct: 181 KLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQ 240

Query: 241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
            EWRPKS  TVS E DSKAI+ + K+G+A+ALKP
Sbjct: 241 HEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
224125966	275	porin/voltage-dependent anion-selective	1.0	0.996	0.767	1e-120
449457153	276	PREDICTED: mitochondrial outer membrane	1.0	0.992	0.753	1e-120
224143751	275	porin/voltage-dependent anion-selective	1.0	0.996	0.76	1e-117
225446066	277	PREDICTED: mitochondrial outer membrane	1.0	0.989	0.729	1e-115
147767996	277	hypothetical protein VITISV_017201 [Viti	1.0	0.989	0.725	1e-115
363814512	277	uncharacterized protein LOC100790270 [Gl	0.996	0.985	0.726	1e-110
363807350	277	uncharacterized protein LOC100797369 [Gl	0.996	0.985	0.719	1e-110
36957233	277	VDAC3.1 [Lotus japonicus]	0.996	0.985	0.697	1e-106
297796647	274	hypothetical protein ARALYDRAFT_495848 [	1.0	1.0	0.653	1e-104
15242146	274	voltage dependent anion channel 4 [Arabi	1.0	1.0	0.660	1e-104

>gi|224125966|ref|XP_002329628.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|222870509|gb|EEF07640.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/275 (76%), Positives = 241/275 (87%), Gaps = 1/275 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS PAPFSD+GKRAKDLL KDY++ HKFTLS+ SSTG+  +ATGLKKDE+F+GDIN++Y
Sbjct: 1   MGSKPAPFSDIGKRAKDLLTKDYNYDHKFTLSILSSTGMAFTATGLKKDEVFVGDINTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KS NT VDVKVDTYS+VSTKVT+ DILPSTKAA SF+IPDHKSGKLD+QY H HAAI+SS
Sbjct: 61  KSKNTVVDVKVDTYSNVSTKVTVNDILPSTKAAFSFKIPDHKSGKLDVQYFHHHAAIESS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNP PLL+ SA IGS  L LGGEVGFDTAS+SFIKY AGIGLNKPDFSAALLL DKGQ
Sbjct: 121 IGLNPNPLLDFSAAIGSSNLSLGGEVGFDTASSSFIKYNAGIGLNKPDFSAALLLTDKGQ 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
            LKASY+H+V+PF SVAAEMTHRFS+ +NSFTIGSSH VDP T+VKTR SD GK A+ +Q
Sbjct: 181 TLKASYVHSVNPFHSVAAEMTHRFSSLENSFTIGSSHAVDPFTVVKTRFSDNGKAAMLYQ 240

Query: 241 REWRPKSLVTVSAEYDSKAINSA-PKMGLAIALKP 274
            EWRPKSL+T SAEYDSKA ++A PK G+A+ALKP
Sbjct: 241 HEWRPKSLITFSAEYDSKATHAANPKYGIALALKP 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457153|ref|XP_004146313.1| PREDICTED: mitochondrial outer membrane protein porin 4-like [Cucumis sativus]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/276 (75%), Positives = 247/276 (89%), Gaps = 2/276 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS+P PFSD+GK+A+DLL KDY+F HKFTL +P+S G+GL+ATGLK+D+IFIGDI+++Y
Sbjct: 1   MGSSPPPFSDIGKKARDLLTKDYNFDHKFTLLLPNSDGMGLTATGLKRDQIFIGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSG TTVDVK+DTYS+VSTKVT+ DILP+TKA LSFR+PDHKSGKLD+QY HPHAAIDSS
Sbjct: 61  KSGKTTVDVKIDTYSNVSTKVTVTDILPTTKATLSFRVPDHKSGKLDVQYFHPHAAIDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGL+P+PLLE SA IGSK   LGG+VGFDT SASF KY AGI LNK DFSAAL+L DKGQ
Sbjct: 121 IGLHPSPLLEFSAAIGSKNCSLGGDVGFDTTSASFTKYNAGISLNKSDFSAALMLTDKGQ 180

Query: 181 ALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
           ALKASY+H++DP   T VAAEMTH+FST +NSFTIGSSH++DP+TL+KTR SD GK A+ 
Sbjct: 181 ALKASYVHSLDPLNETMVAAEMTHKFSTSENSFTIGSSHVLDPVTLMKTRFSDKGKAAML 240

Query: 239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           FQR+WRPKSLVT+SAEYDSKAI+S+PK+GLAIALKP
Sbjct: 241 FQRQWRPKSLVTLSAEYDSKAIDSSPKIGLAIALKP 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143751|ref|XP_002325061.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118489666|gb|ABK96634.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866495|gb|EEF03626.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/275 (76%), Positives = 238/275 (86%), Gaps = 1/275 (0%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS PAPFSD+GKRAKDLL KDY++ HKFTLS+ SSTG+G +ATGLKKDEIF GDI+++Y
Sbjct: 1   MGSKPAPFSDIGKRAKDLLTKDYNYDHKFTLSILSSTGMGFTATGLKKDEIFNGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           +S NT VDVKVDTYS VSTKVT+ DI PSTKAALSF+IPDHKSGKLD+QYLH HAAIDSS
Sbjct: 61  RSKNTVVDVKVDTYSIVSTKVTVNDIFPSTKAALSFKIPDHKSGKLDVQYLHHHAAIDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNP PLLELSA IGS  L +GGEVGFDTAS+SF+K  AGIGLNKPDFSAA LL DKGQ
Sbjct: 121 IGLNPNPLLELSAAIGSNNLSVGGEVGFDTASSSFVKCNAGIGLNKPDFSAAFLLTDKGQ 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
            LKASY+H+V+P  SVAAEMTH+ S+++NSFTIGSSH VDP T+VKTR SD GK A+  Q
Sbjct: 181 TLKASYVHSVNPLHSVAAEMTHKLSSFENSFTIGSSHAVDPFTVVKTRFSDNGKAAMLCQ 240

Query: 241 REWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALKP 274
            EWRPKSL+T SAEYDSKA + +APK GLA+ALKP
Sbjct: 241 HEWRPKSLITFSAEYDSKATHAAAPKFGLALALKP 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446066|ref|XP_002272180.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Vitis vinifera] gi|297735387|emb|CBI17827.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/277 (72%), Positives = 242/277 (87%), Gaps = 3/277 (1%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MG+ PAPFSD+GK+ +DLLNKDY+F HKFTL + S  G+G++ATG KKD+IF GD++++Y
Sbjct: 1   MGNGPAPFSDIGKKTRDLLNKDYNFDHKFTLLMQSPGGMGVTATGWKKDQIFFGDVSTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSGNTTVD+K+DT+S+VSTKVT  DILP TK A SF+IPDHKSGKLD+QYLHPHAAIDSS
Sbjct: 61  KSGNTTVDLKLDTHSNVSTKVTAHDILPCTKVACSFKIPDHKSGKLDVQYLHPHAAIDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNPTPLLELSA IGSK+L LGGEVG +TASASF KY AGIG+NKPDFS A+LL DKG+
Sbjct: 121 IGLNPTPLLELSAAIGSKDLSLGGEVGLNTASASFTKYNAGIGINKPDFSVAVLLTDKGE 180

Query: 181 ALKASYIHAVDP---FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
            LKASYIH+V+P    T+VAAE+TH+F+TY+NSFTIGS+H+VDP T+VKTRLS+ GKFA+
Sbjct: 181 TLKASYIHSVNPPYGGTTVAAELTHKFNTYENSFTIGSAHVVDPYTMVKTRLSNNGKFAM 240

Query: 238 QFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
             QREWRPKSL+TVS EYD KA N A K+GLA+ALKP
Sbjct: 241 LCQREWRPKSLITVSGEYDPKANNGATKLGLALALKP 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767996|emb|CAN64922.1| hypothetical protein VITISV_017201 [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/277 (72%), Positives = 241/277 (87%), Gaps = 3/277 (1%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MG+ PAPFSD+GK+ +DLLNKDY+F HKFTL + S  G+G++ATG KKD+IF GD++++Y
Sbjct: 1   MGNGPAPFSDIGKKTRDLLNKDYNFDHKFTLLMQSPGGMGVTATGWKKDQIFFGDVSTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSGNTTVD+K+DT+S+VSTKVT  DILP TK A SF+IPDHKSGKLD+QYLHPHAAIDSS
Sbjct: 61  KSGNTTVDLKLDTHSNVSTKVTAHDILPCTKVACSFKIPDHKSGKLDVQYLHPHAAIDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNPTPLLELSA IGSK+L LGGEVG +TASASF KY AGIG+NKPDFS A+LL DKG+
Sbjct: 121 IGLNPTPLLELSAAIGSKDLSLGGEVGLNTASASFTKYNAGIGINKPDFSVAVLLTDKGE 180

Query: 181 ALKASYIHAVDP---FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
            LKASYIH+V+P    T+VAAE+TH+F+TY+NSFTIGS+H+VDP T+ KTRLS+ GKFA+
Sbjct: 181 TLKASYIHSVNPPYGGTTVAAELTHKFNTYENSFTIGSAHVVDPYTMXKTRLSNNGKFAM 240

Query: 238 QFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
             QREWRPKSL+TVS EYD KA N A K+GLA+ALKP
Sbjct: 241 LCQREWRPKSLITVSGEYDPKANNGATKLGLALALKP 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814512|ref|NP_001242891.1| uncharacterized protein LOC100790270 [Glycine max] gi|255635086|gb|ACU17901.1| unknown [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/278 (72%), Positives = 236/278 (84%), Gaps = 5/278 (1%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M + PAPFS++GKRAKDLL KDY+F HKF+LS+P+STGLGL ATGLKKD+IF+GDI+++Y
Sbjct: 1   MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDQIFVGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSGNTTVDVKVDTYS++STKVT+ DIL  TKAALSF IPDHKSGKLD+QYLHPHAA+DSS
Sbjct: 61  KSGNTTVDVKVDTYSNISTKVTVNDILHGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNP+PLLELSA IGSK++ LG EVGF+T SASF KY AG+  NKPDFSAALLLADKGQ
Sbjct: 121 IGLNPSPLLELSAAIGSKDVCLGAEVGFNTTSASFTKYNAGVAFNKPDFSAALLLADKGQ 180

Query: 181 ALKASYIHAVDP---FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
            LKASYI+ VD    FT VAAE++H FST++N FTIGSS  +D  T+VKTR SD GK A+
Sbjct: 181 TLKASYINYVDRPDGFT-VAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGKAAL 239

Query: 238 QFQREWRPKSLVTVSAEYDS-KAINSAPKMGLAIALKP 274
           Q QR WRP SL+T+SAEYDS K   S+ K GLA+ALKP
Sbjct: 240 QCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807350|ref|NP_001242630.1| uncharacterized protein LOC100797369 [Glycine max] gi|255640171|gb|ACU20376.1| unknown [Glycine max]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/278 (71%), Positives = 235/278 (84%), Gaps = 5/278 (1%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M + PAPFS++GKRAKDLL KDY+F HKF+LS+P+STGLGL ATGLKKD++F+GDI+++Y
Sbjct: 1   MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDKLFVGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSGNTTVDVKVDTYS++ TKVT+ DIL  TKAALSF IPDHKSGKLD++YLHPHAA+DSS
Sbjct: 61  KSGNTTVDVKVDTYSNIYTKVTVNDILHGTKAALSFNIPDHKSGKLDVRYLHPHAAVDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNP+PLLELSA IGSK+L LG EVGF+T SASFIKY AG+  NKPDFS AL+LADKGQ
Sbjct: 121 IGLNPSPLLELSAAIGSKDLCLGAEVGFNTTSASFIKYNAGVAFNKPDFSVALMLADKGQ 180

Query: 181 ALKASYIHAVDP---FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
            LKASYIH VD    FT VAAE++HRFS+ +N FTIGSS  +DP T++KTR SD GK A 
Sbjct: 181 TLKASYIHYVDRPDGFT-VAAEISHRFSSLENRFTIGSSQSIDPKTVLKTRFSDDGKAAF 239

Query: 238 QFQREWRPKSLVTVSAEYDS-KAINSAPKMGLAIALKP 274
           Q QR WRP SL+T+SAEYDS K   S+ K GLA+ALKP
Sbjct: 240 QCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|36957233|gb|AAQ87023.1| VDAC3.1 [Lotus japonicus]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 228/278 (82%), Gaps = 5/278 (1%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           M + PA + ++GKRA+DLL KDY+F  KF LS+PSSTGLGL ATGLKKD+IFIGDIN++Y
Sbjct: 1   MANGPALYPEIGKRARDLLYKDYNFDQKFNLSIPSSTGLGLIATGLKKDQIFIGDINTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           KSGN TVDVKVDTYS+VSTKVT+ DI    K ALSF IPDHKSGKLD+QYLHPHAAIDSS
Sbjct: 61  KSGNLTVDVKVDTYSNVSTKVTLNDIFRCKKVALSFNIPDHKSGKLDVQYLHPHAAIDSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNP+P LELS  IGSK+L +G EVGF+T SASF KY AGI  N+PDFSAAL+L DKG+
Sbjct: 121 IGLNPSPQLELSTAIGSKDLCMGAEVGFNTTSASFTKYNAGITFNRPDFSAALMLVDKGK 180

Query: 181 ALKASYIHAVDP---FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
           +LKASYIH VD    FT VAAE+ HRFS+++N FTIGSS L+DP T++KTR SD GK A 
Sbjct: 181 SLKASYIHHVDRPDGFT-VAAEINHRFSSFENRFTIGSSQLIDPNTVLKTRFSDDGKAAF 239

Query: 238 QFQREWRPKSLVTVSAEYDS-KAINSAPKMGLAIALKP 274
             QR WRPKSL+T+SAEYDS K   S+ K+GLA+AL+P
Sbjct: 240 LCQRAWRPKSLITLSAEYDSTKIFGSSTKLGLALALQP 277

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796647|ref|XP_002866208.1| hypothetical protein ARALYDRAFT_495848 [Arabidopsis lyrata subsp. lyrata] gi|297312043|gb|EFH42467.1| hypothetical protein ARALYDRAFT_495848 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/274 (65%), Positives = 228/274 (83%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS+PAPF+D+GK+AKDLLNKDY F HKFTL++ S+TG    ATGLKKD+ F GDI+++Y
Sbjct: 1   MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K  NT VD+K+D++SSVSTKVT+ +++PS KA +SF+IPDHKSGKLD+QY+HPHA ++SS
Sbjct: 61  KGQNTIVDLKIDSHSSVSTKVTVKNLMPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNPTPLL+LSATIGS+ + LGGEV FDTAS+S  KY AGIG N    SAAL+L DKG+
Sbjct: 121 IGLNPTPLLDLSATIGSQSVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
           +L+A+Y+H V+P TS  AE+  RFS Y NSFT+GSSH +D  T+VKTR S+ GK  +  Q
Sbjct: 181 SLRATYVHTVNPTTSFGAELIRRFSNYNNSFTVGSSHSLDQFTVVKTRFSNNGKAGMVVQ 240

Query: 241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           REWRPKSL+T+SAEYDSKA+ S+P++GLA+ALKP
Sbjct: 241 REWRPKSLITLSAEYDSKAVTSSPRLGLALALKP 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242146|ref|NP_200557.1| voltage dependent anion channel 4 [Arabidopsis thaliana] gi|75171280|sp|Q9FKM2.1|VDAC4_ARATH RecName: Full=Mitochondrial outer membrane protein porin 4; AltName: Full=Voltage-dependent anion-selective channel protein 4; Short=AtVDAC4; Short=VDAC-4 gi|9758310|dbj|BAB08784.1| porin-like protein [Arabidopsis thaliana] gi|14334474|gb|AAK59435.1| putative porin protein [Arabidopsis thaliana] gi|16323448|gb|AAL15218.1| putative porin protein [Arabidopsis thaliana] gi|21592427|gb|AAM64378.1| porin-like protein [Arabidopsis thaliana] gi|332009524|gb|AED96907.1| voltage dependent anion channel 4 [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/274 (66%), Positives = 226/274 (82%)

Query: 1   MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
           MGS+PAPF+D+GK+AKDLLNKDY F HKFTL++ S+TG    ATGLKKD+ F GDI+++Y
Sbjct: 1   MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
           K  NT VD+K+D++SSVSTKVT+ ++LPS KA +SF+IPDHKSGKLD+QY+HPHA ++SS
Sbjct: 61  KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query: 121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
           IGLNPTPLL+LSATIGS+ + LGGEV FDTAS+S  KY AGIG N    SAAL+L DKG+
Sbjct: 121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query: 181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
           +L+A+Y+H V+P TS  AE+  RFS Y NSFT+GSSH VD  T+VKTR S+ GK  +  Q
Sbjct: 181 SLRATYVHTVNPTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQ 240

Query: 241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
           REWRPKS +T SAEYDSKA+ S+PK+GLA+ALKP
Sbjct: 241 REWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	1.0	1.0	0.660	9.4e-98
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	1.0	1.0	0.434	2.3e-62
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	1.0	0.992	0.409	1.4e-57
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.467	0.566	0.415	1.1e-40
ASPGD|ASPL0000077985	284	AN4402 [Emericella nidulans (t	0.981	0.947	0.278	6.1e-23
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.974	0.946	0.252	1e-20
CGD|CAL0001151	282	POR1 [Candida albicans (taxid:	0.967	0.939	0.232	5.7e-20
UNIPROTKB|P83781	282	POR1 "Mitochondrial outer memb	0.967	0.939	0.232	5.7e-20
UNIPROTKB|E1C2E3	283	VDAC3 "Uncharacterized protein	0.974	0.943	0.256	2e-17
ZFIN|ZDB-GENE-030131-845	283	vdac2 "voltage-dependent anion	0.978	0.946	0.235	1.4e-16

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 181/274 (66%), Positives = 226/274 (82%)

Query:     1 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
             MGS+PAPF+D+GK+AKDLLNKDY F HKFTL++ S+TG    ATGLKKD+ F GDI+++Y
Sbjct:     1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query:    61 KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
             K  NT VD+K+D++SSVSTKVT+ ++LPS KA +SF+IPDHKSGKLD+QY+HPHA ++SS
Sbjct:    61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query:   121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
             IGLNPTPLL+LSATIGS+ + LGGEV FDTAS+S  KY AGIG N    SAAL+L DKG+
Sbjct:   121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query:   181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
             +L+A+Y+H V+P TS  AE+  RFS Y NSFT+GSSH VD  T+VKTR S+ GK  +  Q
Sbjct:   181 SLRATYVHTVNPTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQ 240

Query:   241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
             REWRPKS +T SAEYDSKA+ S+PK+GLA+ALKP
Sbjct:   241 REWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 119/274 (43%), Positives = 177/274 (64%)

Query:     1 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
             M   P  ++++GK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  
Sbjct:     1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query:    61 KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
             K+ N T DVKV T SS+ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S
Sbjct:    61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query:   121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
             +G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+
Sbjct:   121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query:   181 ALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ 240
              L ASY   V P T V AE++H F+T +N+ T+G+ H +DPLT VK R+++ G      Q
Sbjct:   181 KLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQ 240

Query:   241 REWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
              EWRPKS  TVS E DSKAI+ + K+G+A+ALKP
Sbjct:   241 HEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 113/276 (40%), Positives = 175/276 (63%)

Query:     1 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVY 60
             M   P  ++++GK+A+DLL KD++   KF+++  S  G+ +++TG KK ++ +GD+    
Sbjct:     1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query:    61 KSGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSS 120
             +  N T D+KV T S+     T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S
Sbjct:    61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query:   121 IGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQ 180
             +GL   P +  S  IGS  L +G +V FDT S +F K  AG+   K D  A+L + DKG 
Sbjct:   121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query:   181 ALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQ 238
              L ASY H V+P   T+V AE++H+ S+  ++ T+G+ H +DPLT VK R++  G  +  
Sbjct:   181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query:   239 FQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274
              Q EW+PKS  T+S E D+K+I+ + K+GLA+ALKP
Sbjct:   241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 54/130 (41%), Positives = 84/130 (64%)

Query:   147 GFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAA--EMTHRF 204
             G+DT S +F KY  G+ + KPD   +++L DKG ++KASY++ +D  T  A   E+  + 
Sbjct:    97 GYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKI 156

Query:   205 STYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAP 264
             ST + + T+G  + VD LT VK +L+  GKF    Q E  PKS+VT+S E D+K ++  P
Sbjct:   157 STNETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYP 216

Query:   265 KMGLAIALKP 274
             ++GL+++LKP
Sbjct:   217 RLGLSLSLKP 226

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ASPGD|ASPL0000077985 AN4402 [Emericella nidulans (taxid:162425)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 78/280 (27%), Positives = 132/280 (47%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSST--GLGLSATGLKKDEIFI-GDINSVYK 61
             PA FSD+ K A DLLNKD+  G   +L V S    G+  +  G    E  I G + + Y 
Sbjct:     4 PAAFSDIAKAANDLLNKDFYHGSAASLEVKSKAPNGVTFNVKGKSAHEGPIAGSLEAKYV 63

Query:    62 SGNT--TVDVKVDTYSSVSTKVTMVD-ILPSTKAALSFR-IP--DHKSGKLDLQYLHPHA 115
                T  T+     T +++ TK+ + + I    KA +  + +P    K  KL+L +  P+ 
Sbjct:    64 DAPTGLTLTQAWTTANALDTKLELDNNIAKGLKAEIITQYLPAKQSKGAKLNLHFKQPNL 123

Query:   116 AIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLL 175
                +   L   P     A +G +  ++G E G+D   A+  KY+A +G + P +SAA+  
Sbjct:   124 HARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYSAAIQA 183

Query:   176 ADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQN-SFTIGSSHLVDPLTLVKTRLSDGGK 234
             A+      ASY H V+      A+ T    T  +    + S + +DP +  K +++D G 
Sbjct:   184 ANNLTVFSASYYHRVNAQVEAGAKATWDSKTGNSVGLEVASKYRLDPSSFAKVKINDRGI 243

Query:   235 FAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
              A+ +    RP   + + A +D++ +N A  K+G +   +
Sbjct:   244 AALAYNVLLRPGVTLGLGASFDTQNLNQAAHKVGASFTFE 283

GO:0005576 "extracellular region" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0051027 "DNA transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 71/281 (25%), Positives = 133/281 (47%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKDE---IFIGDINSVY 60
             P  +SD+GK+A+D+ +K Y+FG  K  L   +S+G+  +  G    E   +F G + + Y
Sbjct:     3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVF-GSLETKY 61

Query:    61 KSGN--TTVDVKVDTYSSVSTKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPH 114
             K  +   T+  K +T +++ T+V + D +L   K +L     P   +K+GK  + Y H +
Sbjct:    62 KVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHEN 121

Query:   115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
                DS + ++   PL+  SA +G +  + G +  FDT  +        +G    DF    
Sbjct:   122 VKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHT 181

Query:   174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
              + D GQ    S          V  +++    T    F IG+ + +D    V+ ++++  
Sbjct:   182 AVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNAS 240

Query:   234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
             +  + +Q++ R    +T+S   D K  N+   K+G+ + L+
Sbjct:   241 QVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

CGD|CAL0001151 POR1 [Candida albicans (taxid:5476)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 65/279 (23%), Positives = 128/279 (45%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSST----GLGLSATG-LKKDEIFIGDINSV 59
             PA +SD+ K + DL+NKD  F H  T +V   T    G+  +  G   KD+     +++ 
Sbjct:     3 PAAYSDLSKASNDLINKD--FYHLSTAAVDVKTVAPNGVTFTVKGKTTKDDTISASVDAK 60

Query:    60 Y--KSGNTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAA 116
             Y  K+   T+    +  ++++TK+ + ++L P  K  L   +  + +    L + +  +A
Sbjct:    61 YLDKATGLTLTQGWNNANALNTKIELSELLTPGLKGELDTSVVPNGARNAKLNFFYQQSA 120

Query:   117 IDSSI--GLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALL 174
             +++ +   L   P+      +       G E+G+D +SA   KY+ G+G    ++  A  
Sbjct:   121 VNARLFFDLLKGPIATADLVVAHDGFTAGAELGYDISSAKVNKYSVGVGYANLNYGLAAT 180

Query:   175 LADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQN-SFTIGSSHLVDPLTLVKTRLSDGG 233
                      A+Y H V P   V A+ T       N +    + + +D  + +K +++D G
Sbjct:   181 ATSNLSVFSAAYFHKVSPLVQVGAKATWDSIKSSNVNVEFATKYALDNTSFIKAKIADSG 240

Query:   234 KFAVQFQREWRPKSLVTVSAEYDS-KAINSAPKMGLAIA 271
               A+ + +E RP   + + A +D+ K      K+G +++
Sbjct:   241 LTALSYTQELRPGVKLGLGASFDALKLAEPVHKLGFSLS 279

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0051027 "DNA transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P83781 POR1 "Mitochondrial outer membrane protein porin" [Candida albicans SC5314 (taxid:237561)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 65/279 (23%), Positives = 128/279 (45%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSST----GLGLSATG-LKKDEIFIGDINSV 59
             PA +SD+ K + DL+NKD  F H  T +V   T    G+  +  G   KD+     +++ 
Sbjct:     3 PAAYSDLSKASNDLINKD--FYHLSTAAVDVKTVAPNGVTFTVKGKTTKDDTISASVDAK 60

Query:    60 Y--KSGNTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAA 116
             Y  K+   T+    +  ++++TK+ + ++L P  K  L   +  + +    L + +  +A
Sbjct:    61 YLDKATGLTLTQGWNNANALNTKIELSELLTPGLKGELDTSVVPNGARNAKLNFFYQQSA 120

Query:   117 IDSSI--GLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALL 174
             +++ +   L   P+      +       G E+G+D +SA   KY+ G+G    ++  A  
Sbjct:   121 VNARLFFDLLKGPIATADLVVAHDGFTAGAELGYDISSAKVNKYSVGVGYANLNYGLAAT 180

Query:   175 LADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQN-SFTIGSSHLVDPLTLVKTRLSDGG 233
                      A+Y H V P   V A+ T       N +    + + +D  + +K +++D G
Sbjct:   181 ATSNLSVFSAAYFHKVSPLVQVGAKATWDSIKSSNVNVEFATKYALDNTSFIKAKIADSG 240

Query:   234 KFAVQFQREWRPKSLVTVSAEYDS-KAINSAPKMGLAIA 271
               A+ + +E RP   + + A +D+ K      K+G +++
Sbjct:   241 LTALSYTQELRPGVKLGLGASFDALKLAEPVHKLGFSLS 279

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|E1C2E3 VDAC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 72/281 (25%), Positives = 130/281 (46%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
             P  +SD+GK A+D+ NK Y FG  K  L   SS+G+  +ATG    +    +G++ + YK
Sbjct:     4 PPSYSDLGKAARDVFNKGYGFGMVKLELKTKSSSGVEFTATGSSNTDTGKALGNLETKYK 63

Query:    62 S---GNTTVDVKVDTYSSVSTKVTMVDILPS-TKAAL-SFRIPD--HKSGKLDLQYLHPH 114
                 G T +  K +T +++ T+V+M D L    K AL +  +P+   KSGKL   Y   +
Sbjct:    64 IKDYGLTFIQ-KWNTDNTLGTEVSMEDQLAEGLKVALDTIFVPNTGKKSGKLKTSYRRDY 122

Query:   115 AAIDSSIGLNPT-PLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
               +  +I ++ + P +   A +G +  + G ++ FDTA +   +    +G    DF    
Sbjct:   123 VNLGCNIDIDLSGPTIYGWAVLGYEGWLAGYQMAFDTAKSKLSQNNFALGYKAGDFQLHT 182

Query:   174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
              + D G     S    V+     +  +     +    F I + + +D  T +  ++++  
Sbjct:   183 NVND-GTEFGGSIYQKVNNKVETSVNLAWTAGSNNTRFGIAAKYQLDEKTSIGAKVNNAS 241

Query:   234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
                + +    RP   +T+S   D K  ++   K+GL   L+
Sbjct:   242 LIGIGYTLALRPGVKLTLSGLIDGKNFSAGGHKVGLGFELE 282

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0001662 "behavioral fear response" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007612 "learning" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

ZFIN|ZDB-GENE-030131-845 vdac2 "voltage-dependent anion channel 2" [Danio rerio (taxid:7955)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 66/280 (23%), Positives = 120/280 (42%)

Query:     5 PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
             P  ++D+GK AKD+ NK Y FG  K  +   S++G+    +G    +    +G + + YK
Sbjct:     4 PPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYK 63

Query:    62 SGN--TTVDVKVDTYSSVSTKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPHA 115
                   T   K +T +++ T++ + D I    K        P+   KSGK+   Y     
Sbjct:    64 RSEYGLTFTEKWNTDNTLGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFV 123

Query:   116 AIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALL 174
              +   +  +   P +  +A +G +  + G ++ FDTA +   +    +G    DF     
Sbjct:   124 NLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYKTGDFQLHTN 183

Query:   175 LADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGK 234
             + D G     S    V      A  +     +    F I + + +D    +  ++++   
Sbjct:   184 VND-GSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNTSL 242

Query:   235 FAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
               V + +  RP   +T+SA  D K+INS   K+GL + L+
Sbjct:   243 VGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELE 282

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10S27	VDAC6_ORYSJ	No assigned EC number	0.6086	1.0	0.9927	yes	no
Q9FKM2	VDAC4_ARATH	No assigned EC number	0.6605	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01210004 porin/voltage-dependent anion-selective channel protein (275 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-78
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	3e-77
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	4e-06
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	8e-05

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  238 bits (610), Expect = 2e-78
 Identities = 94/277 (33%), Positives = 148/277 (53%), Gaps = 9/277 (3%)

Query: 5   PAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKDEIFIGDINSV--YK 61
           P  + D+GK AKDLL K Y+FG  K  +   +  G+  ++TG KK +      +    YK
Sbjct: 1   PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK 60

Query: 62  SGNTTVDVKVDTYSSVSTKVTMVD-ILPSTKAALSFRIP---DHKSGKLDLQYLHPHAAI 117
               T+  K +T + + T++T+ D + P  K  L    P     KSGKL   Y H    I
Sbjct: 61  IKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPINI 120

Query: 118 DSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLAD 177
           ++ + LN  PL+  SA +G K  +LG EV +DTA + F KY   +G    DF  +L L +
Sbjct: 121 NADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN 180

Query: 178 KGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237
            G+ L+ SY H V P  +V A++T    T + +F +G  + +DP  LVK ++++ G+  +
Sbjct: 181 -GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL 239

Query: 238 QFQREWRPKSLVTVSAEYDSKA-INSAPKMGLAIALK 273
            +Q + RP   +T+SA +D+K       K GL+++LK
Sbjct: 240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  235 bits (601), Expect = 3e-77
 Identities = 100/272 (36%), Positives = 141/272 (51%), Gaps = 8/272 (2%)

Query: 4   NPAPFSDVGKRAKDLLNKDYDF-GHKFTLSVPSSTGLGLSATGLKK--DEIFIGDINSVY 60
           NP  + D+GK A+DLLNKDY F G K  ++  S  G+  + +G K     +  GD  + Y
Sbjct: 1   NPGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKY 60

Query: 61  KSGNTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDH---KSGKLDLQYLHPHAA 116
           K    T+ +K DT + +ST  T+ D L P  K  LS ++      KS KL+L+Y      
Sbjct: 61  KDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFT 120

Query: 117 IDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLA 176
               +GL   P++  SA  G   L LG E  +DTAS    KY A +G    D+ A+L L 
Sbjct: 121 ASLKVGLLKGPIVVGSALQGVTGLALGAEAVYDTASGKLTKYNAALGYAARDYIASLTLN 180

Query: 177 DKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFA 236
           +KG  L ASY H V     V AE+T  FS+ + + T+G  + +DP T VK ++   GK  
Sbjct: 181 NKGDVLTASYYHKVSDKLEVGAELTWNFSSNETTTTVGYKYDLDPSTTVKAKVDSNGKVG 240

Query: 237 VQFQREWRPKSLVTVSAEYD-SKAINSAPKMG 267
           +  ++  RP   +T+SAE D  K I  A K G
Sbjct: 241 LLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 53/268 (19%), Positives = 101/268 (37%), Gaps = 23/268 (8%)

Query: 8   FSDVGKRAKDLLNKDYDFGHKFTLSVPSS---TGLGLSATGLKKDEIFIGDINSVYKSGN 64
           ++++GK A+DL  K Y  G K  +   S    T  G + T   +    +G  +   K   
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVG-GSLETKYRW 60

Query: 65  TTVDV----KVDTYSSVSTKVTMVDILP---STKAALSFRIPD-HKSGKLDLQYLHPHAA 116
           +   +    K +T +++  ++T+ D L     +    SF      K+ K+   Y   +  
Sbjct: 61  SPYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLG 120

Query: 117 IDSSIGLNPTPLLELSATIGSKELVLGGEVGFD-----TASASFIKYTAGIGLNKPDFSA 171
            D        PL+  +  +G +  + G ++ F+     T S   + Y         +F A
Sbjct: 121 CDVDFD-IAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYN----EFQA 175

Query: 172 ALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSD 231
              + + G     S  H V+    V   +          F I + + VDP       +++
Sbjct: 176 HTNV-NDGTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNN 234

Query: 232 GGKFAVQFQREWRPKSLVTVSAEYDSKA 259
                + + +  +P   +T+SA  D KA
Sbjct: 235 SSLVGLGYTQTLKPGIKLTLSALLDHKA 262

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 51/297 (17%), Positives = 108/297 (36%), Gaps = 49/297 (16%)

Query: 4   NPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSV--YK 61
           NP  F ++ +  K++   D+  G +  ++   S    +S +      + +G  +    Y+
Sbjct: 3   NPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHS------LHLGSSSLTSSYQ 56

Query: 62  SGNTTVDVK--------VDTYSSVSTKVTMVDILPS--TKAALSFRIPDHKSGKLDLQYL 111
            G T V  K        +D   +++ ++ +  +     +K     +       +L+L Y 
Sbjct: 57  FGATYVGDKQYPFLQGDIDNDGNLNARI-IHQLGDRLRSKLQAQLQDSKFNMSQLELDYR 115

Query: 112 HPHAAIDSSIGL---NPTPLLELSATIGS------KELVLGGEV-------GFDTASASF 155
                 D +  L   NP  L E    + S       +L LGGE+          +  +  
Sbjct: 116 GD----DFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYA 171

Query: 156 IKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGS 215
            +YTAG      ++ A+  L  +G  L  SY   +     +  E+     T +++ T+G 
Sbjct: 172 ARYTAG------NWIASGQLGAQGG-LHLSYYRKLSDKLQLGVELELNLRTRESTATLG- 223

Query: 216 SHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272
                  +  +  +   GK +   ++       + +S E +    +   K G  + +
Sbjct: 224 YQYDFRQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDY--KFGFGLTI 278

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	99.96
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	99.51
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.39
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.9
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.89
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.54
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.69
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.52
KOG3296	308	consensus Translocase of outer mitochondrial membr	95.89
PRK10716	435	long-chain fatty acid outer membrane transporter;	93.79
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	90.66
PF11383	319	DUF3187: Protein of unknown function (DUF3187); In	89.53
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	88.98
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	86.48
PF03349	427	Toluene_X: Outer membrane protein transport protei	85.08
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	83.91
PF04338	210	DUF481: Protein of unknown function, DUF481; Inter	80.47

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=1.5e-61  Score=427.80  Aligned_cols=268  Identities=36%  Similarity=0.615  Sum_probs=256.9

Q ss_pred             CCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCCeEEEEEEeCCCceEEEE
Q 023992            5 PAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGNTTVDVKVDTYSSVSTKV   81 (274)
Q Consensus         5 p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~t~~~l~~~i   81 (274)
                      ||+|.||+|.|||||+|||+++ |+|+|++++++|++|+++++.++  +++.|++|++|+.++++++++|+|+|++.++|
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v   80 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI   80 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence            8999999999999999999975 99999999999999999998876  69999999999999999999999999999999


Q ss_pred             EEcc-cCCCeEEEEEEEec---CCCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccCCccee
Q 023992           82 TMVD-ILPSTKAALSFRIP---DHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIK  157 (274)
Q Consensus        82 ~~~~-~~~glk~~~~~~~p---~~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~~~~  157 (274)
                      ++++ ++||+|+++++.+|   +.++++++++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++.+++
T Consensus        81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~  160 (276)
T cd07306          81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK  160 (276)
T ss_pred             EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence            9999 66999999999975   3579999999999999999999987789999999999999999999999999889999


Q ss_pred             eEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCceEEE
Q 023992          158 YTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV  237 (274)
Q Consensus       158 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~  237 (274)
                      |+++++|+.++|++++++++ ++.+++||||++++++++|+|+.|....+++++++|+||.+++++++|||||++|.+++
T Consensus       161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~  239 (276)
T cd07306         161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL  239 (276)
T ss_pred             EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEE
Confidence            99999999999999999998 79999999999999999999999999889999999999999989999999999999999


Q ss_pred             EEEEEeeCCeEEEEEEEEecCCCC-CCCeeEEEEEEc
Q 023992          238 QFQREWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALK  273 (274)
Q Consensus       238 ~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~  273 (274)
                      +|+++|+|++++++|+++|+++++ +.||||++|+|+
T Consensus       240 ~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~  276 (276)
T cd07306         240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK  276 (276)
T ss_pred             EEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence            999999999999999999999886 799999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.4e-62  Score=419.66  Aligned_cols=272  Identities=33%  Similarity=0.515  Sum_probs=258.0

Q ss_pred             CCCCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeC--CeEEEEEEeCCCc
Q 023992            2 GSNPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSG--NTTVDVKVDTYSS   76 (274)
Q Consensus         2 ~~~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~--~~~~~~~~~t~~~   76 (274)
                      .|.||+|.||||.|||||+|||+++ |++++++++.+|++|++++..+.  +++.|++|+||+++  +++++++|+|+++
T Consensus         1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~   80 (281)
T KOG3126|consen    1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT   80 (281)
T ss_pred             CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence            3779999999999999999999998 89999999999999999998765  68999999999988  7999999999999


Q ss_pred             eEEEEEEcc-cCCCeEEEEEEEecC---CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccC
Q 023992           77 VSTKVTMVD-ILPSTKAALSFRIPD---HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTAS  152 (274)
Q Consensus        77 l~~~i~~~~-~~~glk~~~~~~~p~---~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~  152 (274)
                      +.++|++++ ++||+|+.+..++|+   .+++|++++|.|+++++.+...+.++|.+..++++++++|++|+|+.||.++
T Consensus        81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~  160 (281)
T KOG3126|consen   81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS  160 (281)
T ss_pred             cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence            999999987 999999999999765   6899999999999999988644457999999999999999999999999999


Q ss_pred             CcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992          153 ASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG  232 (274)
Q Consensus       153 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~  232 (274)
                      +.+++|+++++|..+++++++.++| .+.+.+|+|||+++.++++++++|.....+++++||.||.+|+.++|||||++.
T Consensus       161 ~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~  239 (281)
T KOG3126|consen  161 GKLTKYNAALGYTTEDFTLHLNLNN-GTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNA  239 (281)
T ss_pred             CcEeeEEEEEEeecCCcEEEEEecc-cchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCC
Confidence            9999999999999999999999987 799999999999999999999999998889999999999999999999999999


Q ss_pred             ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEcC
Q 023992          233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP  274 (274)
Q Consensus       233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~~  274 (274)
                      |+++++|+|+|+|++++++|+++|.++++..||||++|+|+|
T Consensus       240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~  281 (281)
T KOG3126|consen  240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP  281 (281)
T ss_pred             ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence            999999999999999999999999999875599999999997

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=3.7e-52  Score=366.89  Aligned_cols=259  Identities=21%  Similarity=0.356  Sum_probs=238.1

Q ss_pred             CCCCccccccccccCCCCCCceEEEEecCCCCcEEEEEEEee------CceEEEEEEEEEEeC--CeEEEEEEeCCCceE
Q 023992            7 PFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKK------DEIFIGDINSVYKSG--NTTVDVKVDTYSSVS   78 (274)
Q Consensus         7 ~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~~------~~~~~g~~~~~~~~~--~~~~~~~~~t~~~l~   78 (274)
                      +|+||+|+|||||++||++|++++|++..++  +|+++++..      ...+.++++.++++.  +++++++|++++++.
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~   78 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG   78 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence            5999999999999999999999999998875  699999764      348999999998764  699999999999999


Q ss_pred             EEEEEcc-cCCCeEEEEEEEe-cC--CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccCCc
Q 023992           79 TKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASAS  154 (274)
Q Consensus        79 ~~i~~~~-~~~glk~~~~~~~-p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~  154 (274)
                      +++++.+ +.||+|.++.+++ |.  ...++++.+|+++++++++.++. .+|.+..++++++++|++|+|+.||.++ .
T Consensus        79 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~  156 (274)
T cd07303          79 LEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-R  156 (274)
T ss_pred             EEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-c
Confidence            9999988 8899999999986 42  36889999999999988888765 5899999999999999999999999987 4


Q ss_pred             ceeeEEEEeeec--CCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992          155 FIKYTAGIGLNK--PDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG  232 (274)
Q Consensus       155 ~~~~~~~~~Y~~--~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~  232 (274)
                      +++++++++|..  ++|++++++++ ++.+++|||||++|++++|+|++|+...++++++||+||.+++++++|||||++
T Consensus       157 ~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~  235 (274)
T cd07303         157 VTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNS  235 (274)
T ss_pred             ccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCC
Confidence            589999999998  89999999987 799999999999999999999999988899999999999998889999999999


Q ss_pred             ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      |.|+++||++|+|+++|++|+++|++  ++.||||+||+|
T Consensus       236 g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~  273 (274)
T cd07303         236 SLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF  273 (274)
T ss_pred             ceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence            99999999999999999999999995  578999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=7.9e-47  Score=333.20  Aligned_cols=260  Identities=27%  Similarity=0.423  Sum_probs=233.2

Q ss_pred             CCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEee--Cc-eEEEEEEEEEEeCCeEEEEEEeCCCceEE
Q 023992            4 NPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKK--DE-IFIGDINSVYKSGNTTVDVKVDTYSSVST   79 (274)
Q Consensus         4 ~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~t~~~l~~   79 (274)
                      |||.|+||+|+|||||++||+|+ ++++++++++.++.|++++...  .+ .+.+.++++|.  +..+++.|+.++...+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~   78 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL   78 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence            79999999999999999999986 9999999999999999999876  35 79999999998  7788899999999999


Q ss_pred             EEEEcc-cCCCeEEEEEEEec-C--CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccC-CeEEEEEEEEeccCCc
Q 023992           80 KVTMVD-ILPSTKAALSFRIP-D--HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSK-ELVLGGEVGFDTASAS  154 (274)
Q Consensus        80 ~i~~~~-~~~glk~~~~~~~p-~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~-~~~lG~e~~yd~~~~~  154 (274)
                      ++++++ +.||+++.+.++++ +  .+..+++++|+++++++.+.+++...|.+..+.+.+.. +|++|+|+.||...+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~  158 (273)
T PF01459_consen   79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK  158 (273)
T ss_dssp             EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred             EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence            999998 89999999999864 3  36899999999999999999987558899999998755 9999999999999999


Q ss_pred             ceeeEEEEeeecC----CcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEec
Q 023992          155 FIKYTAGIGLNKP----DFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLS  230 (274)
Q Consensus       155 ~~~~~~~~~Y~~~----~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~  230 (274)
                      +.+|+++++|..+    ++++++++.++.+.+++||||++++++++|+|++++...+++.++||++|.+++.+++|||||
T Consensus       159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvd  238 (273)
T PF01459_consen  159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVD  238 (273)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEE
T ss_pred             cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEc
Confidence            9999999998888    999999996558999999999999999999999999999999999999999987779999999


Q ss_pred             CCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeE
Q 023992          231 DGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMG  267 (274)
Q Consensus       231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G  267 (274)
                      ++|+|+++||++|+|++++++|+++|+++.  .||||
T Consensus       239 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~--~~KfG  273 (273)
T PF01459_consen  239 SNGRVSASYEQKLNPGVTLTLSAELDHKNN--NHKFG  273 (273)
T ss_dssp             TTSEEEEEEEEEECTTEEEEEEEEECTT-C---EEEE
T ss_pred             CCCEEEEEEEEecCCCcEEEEEEEEccCCC--CCCcC
Confidence            999999999999999999999999999664  79998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=1.3e-41  Score=301.13  Aligned_cols=261  Identities=13%  Similarity=0.215  Sum_probs=229.7

Q ss_pred             CCCCCCCCccccccccccCCCCCCceEEEEecCCCCcEEEEEEEeeCc----eEEEEEEEEEEeCC--eEEEEEEeCCCc
Q 023992            3 SNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDE----IFIGDINSVYKSGN--TTVDVKVDTYSS   76 (274)
Q Consensus         3 ~~p~~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~~~t~~~   76 (274)
                      -||++|+||+|+|||++..+|..|.|++++..-  +..|.++++...+    ...-.+.+.|....  ..+..++|+++.
T Consensus         2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~l--s~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~   79 (279)
T cd07305           2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGL--SPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGN   79 (279)
T ss_pred             cCCccHHHHHHHHHHhcCccccccEEEEEcccc--CcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCc
Confidence            489999999999999999999888999999854  3568888865433    23346777787777  889999999999


Q ss_pred             eEEEEEEcccCCCeEEEEEEEecC--CCceEEEEEEcCCceEEEEEeeCCCCCe-eeEEEEEc-------cCCeEEEEEE
Q 023992           77 VSTKVTMVDILPSTKAALSFRIPD--HKSGKLDLQYLHPHAAIDSSIGLNPTPL-LELSATIG-------SKELVLGGEV  146 (274)
Q Consensus        77 l~~~i~~~~~~~glk~~~~~~~p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~-~~~s~~~~-------~~~~~lG~e~  146 (274)
                      +.+++..+ +.+.++.++.+++++  ....+++.+|.++++++.+.+   .+|. ++.+++++       +|+|++|+|+
T Consensus        80 l~~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~---~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~  155 (279)
T cd07305          80 LNARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKL---ANPDILNETGIYVASYLQSVTPKLALGGEL  155 (279)
T ss_pred             eeEEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEE---eCCCcccccEEEEEEEEEEccCcEEEEEEE
Confidence            99999854 999999999888765  357899999999999887776   3563 56677665       9999999999


Q ss_pred             EEec-cCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeE
Q 023992          147 GFDT-ASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLV  225 (274)
Q Consensus       147 ~yd~-~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~  225 (274)
                      .|+. +.++++.++++++|+.++|++++++++ .+.+.+||||++++++++|+|++|+...+++.+++|++|.++ ++++
T Consensus       156 ~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~-~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~~-~~~~  233 (279)
T cd07305         156 VYQRVPGNGISVLSYAARYTAGNWIASGQLGA-QGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDFR-QSRF  233 (279)
T ss_pred             EEEEcCCCCceeEEEEEEEccCCEEEEEEEcC-CCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEcC-CCEE
Confidence            9996 678889999999999999999999988 489999999999999999999999999999999999999996 9999


Q ss_pred             EEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992          226 KTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK  273 (274)
Q Consensus       226 Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~  273 (274)
                      ||+||++|.|+++||++|+|++++++|+++|++  ++.+|||+||.|+
T Consensus       234 k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~  279 (279)
T cd07305         234 RGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG  279 (279)
T ss_pred             EEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence            999999999999999999999999999999995  4789999999874

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.5e-29  Score=218.21  Aligned_cols=256  Identities=15%  Similarity=0.206  Sum_probs=198.9

Q ss_pred             CCCCCCCCccccccccc-----------cCCCC--C--CceEEEEecCCCCcEEEEEEEeeCceEEEEEEEEEEeCCeEE
Q 023992            3 SNPAPFSDVGKRAKDLL-----------NKDYD--F--GHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTV   67 (274)
Q Consensus         3 ~~p~~f~dl~K~akdll-----------~k~y~--~--~~~l~~~~~~~~g~~f~~~~~~~~~~~~g~~~~~~~~~~~~~   67 (274)
                      -||++|++|+++|+ +.           +++..  |  ++.+.++...+.|+.|..++       .|..++.+......+
T Consensus        28 ~Npgt~e~L~~~~~-~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty-------~~~~q~~~~~~~~il   99 (308)
T KOG3296|consen   28 LNPGTVEELHSEAS-VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTY-------VYTFQASPTEAFLIL   99 (308)
T ss_pred             CCcHHHHHhhhhhc-cCceeecceEeeecccccCceEeccceecccCccccceeccce-------eeeeccccCCCcceE
Confidence            38999999999996 33           22221  1  23444444445555555554       344444444444566


Q ss_pred             EEEEeCCCceEEEEEEcccCCCeEEEEEEEecCCCceEEEEEEcCCceEEEEEeeCC-CCCeeeEEEEE-------ccCC
Q 023992           68 DVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATI-------GSKE  139 (274)
Q Consensus        68 ~~~~~t~~~l~~~i~~~~~~~glk~~~~~~~p~~~~~~~~~~y~~~~~~~~~~~~l~-~~p~~~~s~~~-------~~~~  139 (274)
                      -..+|++|.+.+++.. ++.++++.++..++.+  ...++-|+..+++..+.+..+. .+|.+..++++       .+|+
T Consensus       100 ~G~vD~~Gslna~l~~-~l~~~Lr~K~~~q~~~--~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~  176 (308)
T KOG3296|consen  100 RGDVDNDGSLNARLIH-QLTDNLRSKVALQIQQ--SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR  176 (308)
T ss_pred             EEecCCCCchhheeec-ccchhhHHHHHHHhcc--hhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc
Confidence            6677899999999964 4888887666555444  2366777777777766666544 47776556554       5999


Q ss_pred             eEEEEEEEEec-cCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEe
Q 023992          140 LVLGGEVGFDT-ASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHL  218 (274)
Q Consensus       140 ~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~  218 (274)
                      |+||+|+.|.. +....+..+++.||...+|++++++..  ..++++||||..++++.|+|+.++..-+++..+++++|+
T Consensus       177 LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~  254 (308)
T KOG3296|consen  177 LSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYD  254 (308)
T ss_pred             ccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEee
Confidence            99999999998 556667899999999999999999974  588999999999999999999999988899999999999


Q ss_pred             e-CCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992          219 V-DPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK  273 (274)
Q Consensus       219 l-d~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~  273 (274)
                      + .+++.+||+||+||.|++.+|+||.+.+++.+|+++||  .+..+|||+||++.
T Consensus       255 l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh--~k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  255 LPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNH--VKNDFKFGFGLTIG  308 (308)
T ss_pred             ccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeecc--cccccccceeEEeC
Confidence            8 77899999999999999999999977899999999999  44679999999874

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=99.51  E-value=8.5e-13  Score=105.45  Aligned_cols=143  Identities=17%  Similarity=0.188  Sum_probs=109.0

Q ss_pred             CCCCCCCCccccc-cccccCCCCC-CceEEEEecCCCCcEEEEEEEeeCce--EEE-EEEEEEEeCCeEEEEEEeCCCce
Q 023992            3 SNPAPFSDVGKRA-KDLLNKDYDF-GHKFTLSVPSSTGLGLSATGLKKDEI--FIG-DINSVYKSGNTTVDVKVDTYSSV   77 (274)
Q Consensus         3 ~~p~~f~dl~K~a-kdll~k~y~~-~~~l~~~~~~~~g~~f~~~~~~~~~~--~~g-~~~~~~~~~~~~~~~~~~t~~~l   77 (274)
                      -||++|++|+|+| ||++-+.|.| |.|++++..-.-+..|.++++...|.  +.+ ...+.|....+.+-..+|++|.+
T Consensus         2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l   81 (161)
T TIGR00989         2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV   81 (161)
T ss_pred             cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence            3899999999999 9999999988 69999988643346799999764432  111 12233333346778889999999


Q ss_pred             EEEEEEcccCCCeEEEEEEEecC--CCceEEEEEEcCCceEEEEEeeCCCCCee-eE--EEEE-------ccCCeEEEEE
Q 023992           78 STKVTMVDILPSTKAALSFRIPD--HKSGKLDLQYLHPHAAIDSSIGLNPTPLL-EL--SATI-------GSKELVLGGE  145 (274)
Q Consensus        78 ~~~i~~~~~~~glk~~~~~~~p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~-~~--s~~~-------~~~~~~lG~e  145 (274)
                      .+++..+ +.+.+..++.+++.+  ....+++.+|+.++|++++++   .+|.+ +.  ++++       .+|+|+||.|
T Consensus        82 ~ar~~~~-~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Dft~~lk~---~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E  157 (161)
T TIGR00989        82 STRLNYR-WGDRTISKVQFQISGGQPDMCQFEHDHLGDDFSASLKA---INPSFLEKGLTGIFVGSYLQSVTPRLGLGLE  157 (161)
T ss_pred             EEEEEEe-eCcceeEEEEEEecCCCCceEEEEEEecCCeEEEEEEE---cCcccccccceEEEEEeeeehhCcceeeeee
Confidence            9999854 899998888887543  357889999999999998877   46764 32  4443       5999999999


Q ss_pred             EEEe
Q 023992          146 VGFD  149 (274)
Q Consensus       146 ~~yd  149 (274)
                      +.|+
T Consensus       158 ~~yq  161 (161)
T TIGR00989       158 ALWQ  161 (161)
T ss_pred             eEeC
Confidence            9985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.39  E-value=6.2e-10  Score=98.72  Aligned_cols=182  Identities=15%  Similarity=0.206  Sum_probs=129.4

Q ss_pred             cCCCeEEEEEEEecC---CCceEEEEEEcCCc--eEEEEEeeCCCCCeeeEEEEEc-cCCeEEEEEEEEeccCCcceeeE
Q 023992           86 ILPSTKAALSFRIPD---HKSGKLDLQYLHPH--AAIDSSIGLNPTPLLELSATIG-SKELVLGGEVGFDTASASFIKYT  159 (274)
Q Consensus        86 ~~~glk~~~~~~~p~---~~~~~~~~~y~~~~--~~~~~~~~l~~~p~~~~s~~~~-~~~~~lG~e~~yd~~~~~~~~~~  159 (274)
                      +.|.+.+.=.+.+..   ....++...|..+.  ..+..+++-.  -.++...... .+++  -..+..+.+......+.
T Consensus        34 ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~--g~l~~~~~~~~~~~~--~~k~~~~~~~~~~~~~q  109 (279)
T cd07305          34 LSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDND--GNLNARIIHQLGDRL--RSKLQAQLQDSKFNMSQ  109 (279)
T ss_pred             cCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCC--CceeEEEEeccCcce--EEEEEEEecCCCceeEE
Confidence            555544433333221   23568888888888  7777777521  1233332221 2344  34444444544567899


Q ss_pred             EEEeeecCCcEEEEEEccC-----cCeEEEEEEEEeCCcceEEEEEEEE--eccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992          160 AGIGLNKPDFSAALLLADK-----GQALKASYIHAVDPFTSVAAEMTHR--FSTYQNSFTIGSSHLVDPLTLVKTRLSDG  232 (274)
Q Consensus       160 ~~~~Y~~~~~~~~~~~~~~-----~~~~~~S~~~kvs~~~~~g~e~~~~--~~~~~~~~~vg~~~~ld~~~~~Kakv~s~  232 (274)
                      +.+.|..++|++++++.+.     .+.+.++|.|+|+|++++|+|+.|.  ...+.+..++|++|.- ++.++.+++++.
T Consensus       110 ~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~~~  188 (279)
T cd07305         110 LELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLGAQ  188 (279)
T ss_pred             EEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEcCC
Confidence            9999999999999997553     2678999999999999999999999  5678899999999999 578899999999


Q ss_pred             ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      +.+.++|-|+++|++.++.-.+.+...-+....+|....+
T Consensus       189 ~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~  228 (279)
T cd07305         189 GGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF  228 (279)
T ss_pred             CeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence            9999999999999877776666665432334555554443

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.90  E-value=3.2e-06  Score=74.93  Aligned_cols=173  Identities=14%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             CCcEEEEEEEee--CceEEEEEEEEEEeCCeEEEEEEeCC--CceEEEEEEcccCCCeEEEEEEEe--cC--CCceEEEE
Q 023992           37 TGLGLSATGLKK--DEIFIGDINSVYKSGNTTVDVKVDTY--SSVSTKVTMVDILPSTKAALSFRI--PD--HKSGKLDL  108 (274)
Q Consensus        37 ~g~~f~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~t~--~~l~~~i~~~~~~~glk~~~~~~~--p~--~~~~~~~~  108 (274)
                      .|........-.  .+.-.|.++..|+.+.+.++..++-.  -.+...+.+.  .+++-+..++.+  ..  .....+.+
T Consensus        88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (276)
T cd07306          88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL  165 (276)
T ss_pred             CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence            344444444322  24567777777777654444433332  2333333322  355555554443  11  23567889


Q ss_pred             EEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeecC-CcEEEEEEccCcCeEEEEE
Q 023992          109 QYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNKP-DFSAALLLADKGQALKASY  186 (274)
Q Consensus       109 ~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-~~~~~~~~~~~~~~~~~S~  186 (274)
                      +|.++++.+.+.+.-  ...+..|..- ..+++.+|+|+.|+...++ ..+++|++|.-+ ++.+.+++++ .+.+.++|
T Consensus       166 ~Y~~~d~~~s~~l~~--~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~-~g~v~~~y  241 (276)
T cd07306         166 GYTNGDFELSLKLNN--GKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNN-DGQLGLSY  241 (276)
T ss_pred             EEecCCeEEEEEECC--CCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECC-CceEEEEE
Confidence            999999988887742  3456666553 5788999999999986655 689999999866 4999999987 58999999


Q ss_pred             EEEeCCcceEEEEEEEEecc---CccEEEEEE
Q 023992          187 IHAVDPFTSVAAEMTHRFST---YQNSFTIGS  215 (274)
Q Consensus       187 ~~kvs~~~~~g~e~~~~~~~---~~~~~~vg~  215 (274)
                      .|+++|++.+....+.+...   +...+.+|.
T Consensus       242 ~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l  273 (276)
T cd07306         242 QHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL  273 (276)
T ss_pred             EEEcCCCcEEEEEEEeeccCcCCCCCeEEEEE
Confidence            99999998887777776544   455555553

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.89  E-value=1.2e-06  Score=77.16  Aligned_cols=161  Identities=17%  Similarity=0.200  Sum_probs=110.2

Q ss_pred             ceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE---ccCCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEcc-C
Q 023992          103 SGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI---GSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLAD-K  178 (274)
Q Consensus       103 ~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~---~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~-~  178 (274)
                      ...++..|......+..++    .+.....+.+   ..+++.+=.+..+..... ...+.+.+.|..+++.+.+.+.+ .
T Consensus        54 ~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~y~~~~~~~~~~~~~~~  128 (273)
T PF01459_consen   54 SYSFGAKYKGPKLTVKGDT----DNDGNLEASVRNKLSPGLKLKLSAQLSPGSG-KKSAQLEADYKGDDFNATFKVDNDN  128 (273)
T ss_dssp             EEEEEEEEECEEEEEEEET----TTEEEEEEEEESSTTTTEEEEEEEEE-TTTS--EEEEEEEEEEETTEEEEEEEEEST
T ss_pred             ceEEEEEEeCceeeEEEEe----CCcccEEEEEecccCcceEEEEEEEEeecCC-ceeeEEEEEEecCCEEEEEEEcccC
Confidence            4566667763333333322    3444433333   356765555555443322 25788999999999999999874 2


Q ss_pred             cCeEEEEEEEEeCCcceEEEEEEEEeccCccE-----EEEEEEEeeCCCCeEEEEe-cCCceEEEEEEEEeeCCeEEEEE
Q 023992          179 GQALKASYIHAVDPFTSVAAEMTHRFSTYQNS-----FTIGSSHLVDPLTLVKTRL-SDGGKFAVQFQREWRPKSLVTVS  252 (274)
Q Consensus       179 ~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~-----~~vg~~~~ld~~~~~Kakv-~s~g~v~~~~~~~l~~~~~l~ls  252 (274)
                      ...+.+||.+.+.|++.+|+|+.|+...++..     +.++.+|.- ++.++-+++ ++.+.+.++|-|++++.+.++.-
T Consensus       129 ~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e  207 (273)
T PF01459_consen  129 NPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAE  207 (273)
T ss_dssp             S-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEE
T ss_pred             CCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeee
Confidence            47899999999999999999999998876665     455555553 689999999 67899999999999999999999


Q ss_pred             EEEecCCCCCCCeeEEEEE
Q 023992          253 AEYDSKAINSAPKMGLAIA  271 (274)
Q Consensus       253 ~~~d~~~~~~~~k~G~~l~  271 (274)
                      .+.+...  ....+.+|..
T Consensus       208 ~~~~~~~--~~~~~~vG~~  224 (273)
T PF01459_consen  208 LTYNLSS--RESTFTVGYQ  224 (273)
T ss_dssp             EEEETTC--CEEEEEEEEE
T ss_pred             eeecccC--CCceEEEEEE
Confidence            9998743  3344444443

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.54  E-value=0.00011  Score=65.08  Aligned_cols=130  Identities=15%  Similarity=0.104  Sum_probs=96.2

Q ss_pred             cCCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccC--ccEEEEE
Q 023992          137 SKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTY--QNSFTIG  214 (274)
Q Consensus       137 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~--~~~~~vg  214 (274)
                      .+++.+=.++.++..++. ....+-..|..+++.+.+.+.+ .+-+..++.+-+.+++.+|+|+.|+..++  ...+.++
T Consensus        88 ~~glk~~~~~~~~~~~~~-~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (274)
T cd07303          88 SRGLKSTFDSSFSPNTGK-KNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVG  165 (274)
T ss_pred             CCCeEEEEEEEECCCCcc-EEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccccccccceEEE
Confidence            577777777777643443 4677888899999999999965 36677788899999999999999997543  2344444


Q ss_pred             EEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEE
Q 023992          215 SSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIA  271 (274)
Q Consensus       215 ~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~  271 (274)
                      +.-.. ++..+-+++++.+.+.++|-||++|++.+.+-.+.+.+.  .+..+.+|..
T Consensus       166 y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~--~e~~~~vG~~  219 (274)
T cd07303         166 YKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGN--SNTRFGIAAK  219 (274)
T ss_pred             EEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccC--CccEEEEEEE
Confidence            32222 567778889888999999999999988888877777632  3445555443

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.69  E-value=0.0014  Score=52.86  Aligned_cols=49  Identities=20%  Similarity=0.144  Sum_probs=40.4

Q ss_pred             ceeeEEEEeeecCCcEEEEEEccC-------cCeEEEEEEEEeCCcceEEEEEEEE
Q 023992          155 FIKYTAGIGLNKPDFSAALLLADK-------GQALKASYIHAVDPFTSVAAEMTHR  203 (274)
Q Consensus       155 ~~~~~~~~~Y~~~~~~~~~~~~~~-------~~~~~~S~~~kvs~~~~~g~e~~~~  203 (274)
                      ...+-+-..|...||++++++.|-       .+.+.++|.|.|.|++++|+|+.|.
T Consensus       106 ~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq  161 (161)
T TIGR00989       106 PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ  161 (161)
T ss_pred             CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence            345556689999999999998762       1367899999999999999999883

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.025  Score=49.88  Aligned_cols=114  Identities=14%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             CceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeec-CCcEEEEEEccCc
Q 023992          102 KSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNK-PDFSAALLLADKG  179 (274)
Q Consensus       102 ~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~  179 (274)
                      ..-.+.+.|..+++.+...++-  .-.+..|... ....+..|.++.|..... -..++++.+|.- ++..+.+++++ .
T Consensus       164 t~~n~~lgy~~~d~~l~~~~nn--~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn-~  239 (281)
T KOG3126|consen  164 TKYNAALGYTTEDFTLHLNLNN--GTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNN-A  239 (281)
T ss_pred             eeEEEEEEeecCCcEEEEEecc--cchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecC-C
Confidence            3556788888998888777732  2223333222 234488999999987765 468999999974 67889999987 6


Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEee
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLV  219 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~l  219 (274)
                      +.+.+.|-|++.|.+.++.-.+.+...-...=-+|..+.|
T Consensus       240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~  279 (281)
T KOG3126|consen  240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL  279 (281)
T ss_pred             ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence            8999999999999977777777765432211334444444

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.0058  Score=54.30  Aligned_cols=132  Identities=13%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             CeEEEEEEEEeccC------------CcceeeEEEEeeecCCcEEEEEEcc-C---cCeEEEEEEEEeCCcceEEEEEEE
Q 023992          139 ELVLGGEVGFDTAS------------ASFIKYTAGIGLNKPDFSAALLLAD-K---GQALKASYIHAVDPFTSVAAEMTH  202 (274)
Q Consensus       139 ~~~lG~e~~yd~~~------------~~~~~~~~~~~Y~~~~~~~~~~~~~-~---~~~~~~S~~~kvs~~~~~g~e~~~  202 (274)
                      .-.+.+++.|+...            ++.-.+..-..|...++.+++...+ +   .+.+.++|.|.+.+++++|+|+.|
T Consensus       106 ~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~  185 (308)
T KOG3296|consen  106 DGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLY  185 (308)
T ss_pred             CCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEe
Confidence            34566777665432            2333566777888888888887753 1   245678999999999999999999


Q ss_pred             Ee--ccCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          203 RF--STYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       203 ~~--~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      ..  ...+..++.++||.. .....-+-....|.- +.|-+|..+.+...+..+.|..--+...-++.++.+
T Consensus       186 ~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~-~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  186 QRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLT-GTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             ccCCCccccceeeeeeeee-cceeeEEecccccce-ehhhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence            87  457889999999998 345555555555443 445567778888777777776321223555555543

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=93.79  E-value=4.7  Score=38.10  Aligned_cols=51  Identities=12%  Similarity=0.067  Sum_probs=36.6

Q ss_pred             cCeEEEEEEEEeCCcceEEEEEEEEecc-----------------------CccEEEEEEEEeeCCCCeEEEEe
Q 023992          179 GQALKASYIHAVDPFTSVAAEMTHRFST-----------------------YQNSFTIGSSHLVDPLTLVKTRL  229 (274)
Q Consensus       179 ~~~~~~S~~~kvs~~~~~g~e~~~~~~~-----------------------~~~~~~vg~~~~ld~~~~~Kakv  229 (274)
                      -+.+.++..|+++|++.+.+.++|..=+                       ..-.+++|++|+++++.++|+=+
T Consensus       286 P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~  359 (435)
T PRK10716        286 PEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI  359 (435)
T ss_pred             CcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEEeCCCcceecccccceeeeEEEeeEEEECCCCeEEEEee
Confidence            3678899999999999999999884211                       12346667777776666666654

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=90.66  E-value=13  Score=33.98  Aligned_cols=46  Identities=13%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             EecCCceEEEEEEEEeeCCeEEEEEEEEecCCCC------CCCeeEEEEEEc
Q 023992          228 RLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAIN------SAPKMGLAIALK  273 (274)
Q Consensus       228 kv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~------~~~k~G~~l~~~  273 (274)
                      +-|....+++.+..++++.+.+.++....-++-+      ..+.+++++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            7788889999999999999999999888775422      258888888774

>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria

Probab=89.53  E-value=16  Score=33.13  Aligned_cols=65  Identities=8%  Similarity=0.136  Sum_probs=38.3

Q ss_pred             ccEEEEEEEEeeCCCCeEEEEecC--------------CceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          208 QNSFTIGSSHLVDPLTLVKTRLSD--------------GGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       208 ~~~~~vg~~~~ld~~~~~Kakv~s--------------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      .-...+|++|++.++..++++++.              ...+.+.|+.++.++..+.++..=|.-+.+..+-|+|.+.+
T Consensus       237 ~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l  315 (319)
T PF11383_consen  237 TWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL  315 (319)
T ss_pred             eEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence            345566666666666666666543              24466777777777777777666665344444555555443

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=88.98  E-value=1.1  Score=39.15  Aligned_cols=64  Identities=13%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             CCeEEEEEEEEeccCCcceeeEEEEeeec------CCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEE
Q 023992          138 KELVLGGEVGFDTASASFIKYTAGIGLNK------PDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTH  202 (274)
Q Consensus       138 ~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~------~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~  202 (274)
                      ..|.+|+|+-|-..... ...+.++||.+      ..+++++++++-++.+..+|--|.++.++++.++.+
T Consensus       190 ~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~~SrfdF  259 (260)
T PF12519_consen  190 GRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAFCSRFDF  259 (260)
T ss_pred             ceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceEEeeccc
Confidence            38999999988765554 47889999963      579999999998899999999999999998887654

Proteins in this family are typically between 415 and 473 amino acids in length.

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=86.48  E-value=14  Score=35.02  Aligned_cols=75  Identities=12%  Similarity=0.014  Sum_probs=51.7

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEec---CCceEEEEEEEEeeCCeEEEEEEEEe
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLS---DGGKFAVQFQREWRPKSLVTVSAEYD  256 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~---s~g~v~~~~~~~l~~~~~l~ls~~~d  256 (274)
                      +.+..+++|+++|++++...+.|..=++=..+++=..   +....+....+   +.+++++.-++++++.+++..+...|
T Consensus       286 ~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiayD  362 (440)
T COG2067         286 ASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAYD  362 (440)
T ss_pred             cEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeeeeec
Confidence            6788899999999999999999975443333333322   23333444333   56777777777777777777777777


Q ss_pred             c
Q 023992          257 S  257 (274)
Q Consensus       257 ~  257 (274)
                      .
T Consensus       363 ~  363 (440)
T COG2067         363 Q  363 (440)
T ss_pred             C
Confidence            6

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=85.08  E-value=32  Score=31.89  Aligned_cols=79  Identities=10%  Similarity=0.020  Sum_probs=50.0

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEeccC-ccEEEEEEEEee---CCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEE
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFSTY-QNSFTIGSSHLV---DPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEY  255 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~-~~~~~vg~~~~l---d~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~  255 (274)
                      ..+.+++.|++++++.+.++++|..=+. +...........   .....+.-.-.+.+.+.+..+++++|.+++..+...
T Consensus       270 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G~~y  349 (427)
T PF03349_consen  270 ASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAGYAY  349 (427)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred             eeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEEEEE
Confidence            6788999999999999999999974222 211111111110   012234444555677888888888888888888888


Q ss_pred             ecC
Q 023992          256 DSK  258 (274)
Q Consensus       256 d~~  258 (274)
                      |..
T Consensus       350 ~~s  352 (427)
T PF03349_consen  350 DSS  352 (427)
T ss_dssp             EE-
T ss_pred             ecc
Confidence            873

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=83.91  E-value=40  Score=32.01  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=13.3

Q ss_pred             EEEEcccCCCeEEEEEEEecC
Q 023992           80 KVTMVDILPSTKAALSFRIPD  100 (274)
Q Consensus        80 ~i~~~~~~~glk~~~~~~~p~  100 (274)
                      .++.++...|..+.+...+++
T Consensus       212 ~~~g~~~g~G~~lG~~ye~~d  232 (440)
T COG2067         212 RLKGEDWGFGWNLGVAYEIND  232 (440)
T ss_pred             ccccccccceeEEEEEEccCc
Confidence            344444777877777776665

>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function

Probab=80.47  E-value=18  Score=29.78  Aligned_cols=21  Identities=14%  Similarity=0.214  Sum_probs=12.7

Q ss_pred             EEEEEEeeCCeEEEEEEEEec
Q 023992          237 VQFQREWRPKSLVTVSAEYDS  257 (274)
Q Consensus       237 ~~~~~~l~~~~~l~ls~~~d~  257 (274)
                      +.++.+|.+.+.+.++.+.+.
T Consensus       167 ~~l~~~l~~~l~l~~~~~~~y  187 (210)
T PF04338_consen  167 TGLKVKLTKNLSLSLSYNYDY  187 (210)
T ss_pred             EEEEEEEeccEEEEEEEEEEE
Confidence            445556666666666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2k4t_A	291	Solution Structure Of Human Vdac-1 In Ldao Micelles		7e-09
2jk4_A	294	Structure Of The Human Voltage-Dependent Anion Chan		8e-09
3emn_X	295	The Crystal Structure Of Mouse Vdac1 At 2.3 A Resol		1e-08

>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5   PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
           P  ++D+GK A+D+  K Y FG  K  L   S  GL  +++G    E     G + + Y+
Sbjct: 4   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 63
Query: 62  --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
                 T   K +T +++ T++T+ D L +    L+F     P+   K+ K+   Y   H
Sbjct: 64  WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 122
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
             +   +  +   P +  +  +G +  + G ++ F+TA +   +    +G    +F    
Sbjct: 123 INLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHT 182
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
            + D G     S    V+     A  +          F I + + +DP      ++++  
Sbjct: 183 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSS 241
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
              + + +  +P   +T+SA  D K +N+   K+GL +  +
Sbjct: 242 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282

>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel Length = 294

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5   PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
           P  ++D+GK A+D+  K Y FG  K  L   S  GL  +++G    E     G + + Y+
Sbjct: 7   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 66
Query: 62  --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
                 T   K +T +++ T++T+ D L +    L+F     P+   K+ K+   Y   H
Sbjct: 67  WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 125
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
             +   +  +   P +  +  +G +  + G ++ F+TA +   +    +G    +F    
Sbjct: 126 INLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHT 185
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
            + D G     S    V+     A  +          F I + + +DP      ++++  
Sbjct: 186 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSS 244
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
              + + +  +P   +T+SA  D K +N+   K+GL +  +
Sbjct: 245 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285

>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution Length = 295

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5   PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
           P  ++D+GK A+D+  K Y FG  K  L   S  GL  +++G    E     G + + Y+
Sbjct: 16  PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYR 75
Query: 62  --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
                 T   K +T +++ T++T+ D L +    L+F     P+   K+ K+   Y   H
Sbjct: 76  WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 134
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
             +   +  +   P +  +  +G +  + G ++ F+T+ +   +    +G    +F    
Sbjct: 135 INLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHT 194
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
            + D G     S    V+     A  +          F I + + VDP      ++++  
Sbjct: 195 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSS 253
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
              + + +  +P   +T+SA  D K +N+   K+GL +  +
Sbjct: 254 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3emn_X	295	Voltage-dependent anion-selective channel protein;	1e-60

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  193 bits (490), Expect = 1e-60
 Identities = 58/282 (20%), Positives = 116/282 (41%), Gaps = 12/282 (4%)

Query: 3   SNPAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSV 59
           + P  ++D+GK A+D+  K Y FG  K  L   S  GL  +++G    E     G + + 
Sbjct: 14  AVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETK 73

Query: 60  YKSG--NTTVDVKVDTYSSVSTKVTMVDIL-PSTKAALSFRIPDH---KSGKLDLQYLHP 113
           Y+      T   K +T +++ T++T+ D L    K         +   K+ K+   Y   
Sbjct: 74  YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 133

Query: 114 HAAIDSSIGLNPT-PLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAA 172
           H  +   +  +   P +  +  +G +  + G ++ F+T+ +   +    +G    +F   
Sbjct: 134 HINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLH 193

Query: 173 LLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232
             + D G     S    V+     A  +          F I + + VDP      ++++ 
Sbjct: 194 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 252

Query: 233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
               + + +  +P   +T+SA  D K +N+   K+GL +  +
Sbjct: 253 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.62
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	91.57
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	90.85
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	88.98
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	86.45
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	85.87
3prn_A	289	Porin; integral membrane protein, pore eyelet muta	82.59
2por_A	301	Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SC	81.83

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=3.7e-68  Score=470.16  Aligned_cols=270  Identities=21%  Similarity=0.399  Sum_probs=259.8

Q ss_pred             CCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCC--eEEEEEEeCCCceE
Q 023992            4 NPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGN--TTVDVKVDTYSSVS   78 (274)
Q Consensus         4 ~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~--~~~~~~~~t~~~l~   78 (274)
                      +||+|.||||.|||||+|||+++ |+|+||+++++||+|++++..++  +++.|++|++|++++  ++++++|+|+|.|.
T Consensus        15 ~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~   94 (295)
T 3emn_X           15 VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLG   94 (295)
T ss_dssp             SCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEE
T ss_pred             CCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEE
Confidence            79999999999999999999999 99999999999999999999877  899999999999985  89999999999999


Q ss_pred             EEEEEcc-cCCCeEEEEEEEe-cC--CCceEEEEEEcCCceEEEEEeeCC-CCCeeeEEEEEccCCeEEEEEEEEeccCC
Q 023992           79 TKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASA  153 (274)
Q Consensus        79 ~~i~~~~-~~~glk~~~~~~~-p~--~~~~~~~~~y~~~~~~~~~~~~l~-~~p~~~~s~~~~~~~~~lG~e~~yd~~~~  153 (274)
                      ++|++++ ++||+|+++++++ |+  .++++++++|++++++++++++++ .+|.++.++++++++|++|+|+.||.+.+
T Consensus        95 t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~~~  174 (295)
T 3emn_X           95 TEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKS  174 (295)
T ss_dssp             EEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             EEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeCCC
Confidence            9999999 9999999999996 76  478999999999999999999984 79999999999999999999999999999


Q ss_pred             cceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCc
Q 023992          154 SFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG  233 (274)
Q Consensus       154 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g  233 (274)
                      .+++|+++++|+.++|++++++++ ++.+++|||||+++++++|+|+.|....++++++||+||++|+++++|||||++|
T Consensus       175 ~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g  253 (295)
T 3emn_X          175 RVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSS  253 (295)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTS
T ss_pred             CeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCC
Confidence            999999999999999999999987 7999999999999999999999999988999999999999999999999999999


Q ss_pred             eEEEEEEEEeeCCeEEEEEEEEecCCCC-CCCeeEEEEEEcC
Q 023992          234 KFAVQFQREWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALKP  274 (274)
Q Consensus       234 ~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~~  274 (274)
                      .|+++|+|+|+|++++++|+++|+++++ +.||||++|+||+
T Consensus       254 ~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~  295 (295)
T 3emn_X          254 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA  295 (295)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred             EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence            9999999999999999999999999986 7899999999986

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.62  E-value=7.6e-05  Score=65.46  Aligned_cols=183  Identities=11%  Similarity=0.122  Sum_probs=123.0

Q ss_pred             eEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCCeEEE--EEEeCCC-ceEEEEEEcccCCCeEEEEEEEe--cC
Q 023992           28 KFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGNTTVD--VKVDTYS-SVSTKVTMVDILPSTKAALSFRI--PD  100 (274)
Q Consensus        28 ~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~~~~~--~~~~t~~-~l~~~i~~~~~~~glk~~~~~~~--p~  100 (274)
                      +|++..+-..|+.........+  +.-.|.++..|+.+.+.+.  +..+..+ .+.....+.  .+++-+..++.+  +.
T Consensus        96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~  173 (295)
T 3emn_X           96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK  173 (295)
T ss_dssp             EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred             EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence            5556554455766655555433  3558889999998865554  3342222 333333321  366655555543  22


Q ss_pred             C--CceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeec-CCcEEEEEEc
Q 023992          101 H--KSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNK-PDFSAALLLA  176 (274)
Q Consensus       101 ~--~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~~~~~~~~~~  176 (274)
                      .  ....+.+.|..+++.+.+.++-  ...+..|..- ..+++.+|+|+.|+...++ ...++|..|.- ++..+.++++
T Consensus       174 ~~~t~~n~~~gY~~~d~~~s~~l~~--~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~-~~~tvG~ky~ld~~~~vKakvn  250 (295)
T 3emn_X          174 SRVTQSNFAVGYKTDEFQLHTNVND--GTEFGGSIYQKVNKKLETAVNLAWTAGNSN-TRFGIAAKYQVDPDACFSAKVN  250 (295)
T ss_dssp             TEEEEEEEEEEEECSSEEEEEEEET--TTEEEEEEEEECSSSEEEEEEEEEETTEEE-EEEEEEEEECCSSSEEEEEEEE
T ss_pred             CCeeeEEEEEEEcCCCEEEEEEECC--CCeEEEEEEEECCCceEEEEEEEEeccCCC-cEEEEEEEEEcCCCCEEEEEEC
Confidence            2  3466889999999999888852  3456666553 5789999999999986544 57888889986 6899999998


Q ss_pred             cCcCeEEEEEEEEeCCcceEEEEEEEEec---cCccEEEEEEE
Q 023992          177 DKGQALKASYIHAVDPFTSVAAEMTHRFS---TYQNSFTIGSS  216 (274)
Q Consensus       177 ~~~~~~~~S~~~kvs~~~~~g~e~~~~~~---~~~~~~~vg~~  216 (274)
                      + .+.+.+.|-|++.|.+.+..-.+.+..   .+...+.+|..
T Consensus       251 ~-~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~  292 (295)
T 3emn_X          251 N-SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE  292 (295)
T ss_dssp             T-TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred             C-CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence            8 599999999999999766665555543   24556666543

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=91.57  E-value=7.7  Score=35.11  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=37.2

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEecc--------------------------CccEEEEEEEEeeCCCCeEEEEe
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFST--------------------------YQNSFTIGSSHLVDPLTLVKTRL  229 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~--------------------------~~~~~~vg~~~~ld~~~~~Kakv  229 (274)
                      ..+.++..|++.+++.+.+++.|..-+                          ....+.+|+.|++++..++|+=+
T Consensus       279 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~  354 (439)
T 3bs0_A          279 ASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGY  354 (439)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEee
Confidence            668999999999999999999986321                          12246777777777777777654

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=90.85  E-value=8.9  Score=34.58  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEe
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRF  204 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~  204 (274)
                      ..+.++..|++.+++.+.+++.|..
T Consensus       279 ~~~~~g~~~~~~~~~~l~~d~~~~~  303 (441)
T 3bry_A          279 AQLTVGISHQFNDQLSVSADYQRVF  303 (441)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEEC
T ss_pred             cEEEEeEEEEeCCCEEEEEEEEEEE
Confidence            6789999999999999999998863

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=88.98  E-value=11  Score=32.91  Aligned_cols=134  Identities=7%  Similarity=-0.013  Sum_probs=81.3

Q ss_pred             CCeEEEEEEEEeccC------CcceeeEEEEeeecCCcEEEEEEcc---------------CcCeEEEEEEEEeCCcceE
Q 023992          138 KELVLGGEVGFDTAS------ASFIKYTAGIGLNKPDFSAALLLAD---------------KGQALKASYIHAVDPFTSV  196 (274)
Q Consensus       138 ~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~~~~~~~~~~~---------------~~~~~~~S~~~kvs~~~~~  196 (274)
                      .+|.+++...+.-..      ..-..|.+++.|..+.+.+.+-...               +...+.+.--..+.+ +.+
T Consensus       147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~-~~l  225 (341)
T 3nsg_A          147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN-VYL  225 (341)
T ss_dssp             SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT-EEE
T ss_pred             CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC-EEE
Confidence            345666554443221      2234688888888888777765421               011233333333433 566


Q ss_pred             EEEEEEEec---------------cCccEEEEEEEEeeCCCCeEEEEe-----cC----------CceEEEEEEEEeeCC
Q 023992          197 AAEMTHRFS---------------TYQNSFTIGSSHLVDPLTLVKTRL-----SD----------GGKFAVQFQREWRPK  246 (274)
Q Consensus       197 g~e~~~~~~---------------~~~~~~~vg~~~~ld~~~~~Kakv-----~s----------~g~v~~~~~~~l~~~  246 (274)
                      ++...+...               .+...++++++|++.+..++++-.     +.          .-.+.+.+.+.|+++
T Consensus       226 ~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKr  305 (341)
T 3nsg_A          226 AAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKN  305 (341)
T ss_dssp             EEEEEEESSCCCEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSS
T ss_pred             EEEEEEEEeccccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCC
Confidence            665554321               133578999999998877665532     11          125788899999999


Q ss_pred             eEEEEEEEEecCC--------CCCCCeeEEEEEE
Q 023992          247 SLVTVSAEYDSKA--------INSAPKMGLAIAL  272 (274)
Q Consensus       247 ~~l~ls~~~d~~~--------~~~~~k~G~~l~~  272 (274)
                      ..+-+...++.-+        ....-.+++||..
T Consensus       306 T~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry  339 (341)
T 3nsg_A          306 MNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY  339 (341)
T ss_dssp             EEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred             EEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence            9999998888732        1235789998875

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=86.45  E-value=9.6  Score=34.52  Aligned_cols=75  Identities=9%  Similarity=0.037  Sum_probs=46.6

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCC---eEEEEecCCceEEEEEEEEeeCCeEEEEEEEEe
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLT---LVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYD  256 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~---~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d  256 (274)
                      ..+.++..|++.+++.+.+++.|..=+.-..+.+-    .++..   ...-.-.+.+.+.+..++++++.+++..+...|
T Consensus       273 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~----~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~yd  348 (427)
T 3pgu_A          273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKAT----STSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFD  348 (427)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEE----EETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             cEEEEEEEEecCCCEEEEEEEEEEEeccccceEEE----cCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEEc
Confidence            67888999999999999999999743321112211    10110   011122344667777777787778877777777


Q ss_pred             cC
Q 023992          257 SK  258 (274)
Q Consensus       257 ~~  258 (274)
                      ..
T Consensus       349 ~s  350 (427)
T 3pgu_A          349 DS  350 (427)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=85.87  E-value=20  Score=32.56  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=35.3

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEecc----------------------CccEEEEEEEEeeCCCCeEEEE
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFST----------------------YQNSFTIGSSHLVDPLTLVKTR  228 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~----------------------~~~~~~vg~~~~ld~~~~~Kak  228 (274)
                      ..+.++..+++++++.+.+++.|..-+                      ....+++|+.|++++..++|+=
T Consensus       286 ~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG  356 (451)
T 3dwo_X          286 AYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAG  356 (451)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEE
T ss_pred             cEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEE
Confidence            678889999999999999998886322                      2346666666666666666653

>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1

Probab=82.59  E-value=22  Score=30.44  Aligned_cols=114  Identities=11%  Similarity=0.097  Sum_probs=65.6

Q ss_pred             eeEEEEeeecCCcEEEEEEc--c----CcCeEEEEEEEEeCCcceEEEEEEEE-eccCccEEEEEEEEeeCCCCeEEEEe
Q 023992          157 KYTAGIGLNKPDFSAALLLA--D----KGQALKASYIHAVDPFTSVAAEMTHR-FSTYQNSFTIGSSHLVDPLTLVKTRL  229 (274)
Q Consensus       157 ~~~~~~~Y~~~~~~~~~~~~--~----~~~~~~~S~~~kvs~~~~~g~e~~~~-~~~~~~~~~vg~~~~ld~~~~~Kakv  229 (274)
                      .|.+++.|+..++.+++-..  .    ..+.+.++.=..+.+.+.+++-..-. .......+.++..|.+ ..++|++-+
T Consensus       163 ~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~a~y  241 (289)
T 3prn_A          163 EFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVRAYV  241 (289)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEEEEE
T ss_pred             eEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEEEEEccccccCCceEEEEEEeEe-cCeEEEEEE
Confidence            45555555555554444332  0    01334444444444333443332211 0123456788888888 778888886


Q ss_pred             cC------CceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          230 SD------GGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       230 ~s------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      .+      ....++.+.+.|.++.+|..+..-+-.. +....+|+.++|
T Consensus       242 ~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F  289 (289)
T 3prn_A          242 SDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF  289 (289)
T ss_dssp             EEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred             eccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence            53      2467999999999999999888754311 124677777664

>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*

Probab=81.83  E-value=24  Score=30.16  Aligned_cols=63  Identities=8%  Similarity=0.039  Sum_probs=41.5

Q ss_pred             cEEEEEE--EEeeCCCCeEEEEec-----CCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992          209 NSFTIGS--SHLVDPLTLVKTRLS-----DGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL  272 (274)
Q Consensus       209 ~~~~vg~--~~~ld~~~~~Kakv~-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  272 (274)
                      ..+.+|+  +|.+.+..++++...     +.-.+++.+++.|+|++++-.+...+-.+ +..-.+-+|+.+
T Consensus       230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~  299 (301)
T 2por_A          230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF  299 (301)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred             ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence            4577888  888855444666553     22478999999999999998877766522 122345555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	84.19

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=84.19  E-value=9.6  Score=31.16  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=53.7

Q ss_pred             CeEEEEEEEEeCCcceEEEEEEEEec-----------------------cCccEEEEEEEEeeCCCCeEEEEecC-----
Q 023992          180 QALKASYIHAVDPFTSVAAEMTHRFS-----------------------TYQNSFTIGSSHLVDPLTLVKTRLSD-----  231 (274)
Q Consensus       180 ~~~~~S~~~kvs~~~~~g~e~~~~~~-----------------------~~~~~~~vg~~~~ld~~~~~Kakv~s-----  231 (274)
                      ..+.+++-+++.+++.+++++.|..-                       .....+.+|++|++.+...+|+-+.-     
T Consensus       273 ~~~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~~~  352 (427)
T d1t16a_         273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPV  352 (427)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECCSS
T ss_pred             cEEEEEEEEEeccceeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccCCC
Confidence            56777777888888888888877421                       23467888888888777888887651     


Q ss_pred             -------------CceEEEEEEEEeeCCeEEEEEEEE
Q 023992          232 -------------GGKFAVQFQREWRPKSLVTVSAEY  255 (274)
Q Consensus       232 -------------~g~v~~~~~~~l~~~~~l~ls~~~  255 (274)
                                   .-.+++....++++.+++.++.+.
T Consensus       353 ~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y  389 (427)
T d1t16a_         353 PAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSY  389 (427)
T ss_dssp             CTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred             CcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEEE
Confidence                         234566777788777777776653