Citrus Sinensis ID: 023993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MTSLSFLPTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEccccHHHHHHHHHHHHHHccccEEEEEccccccEEcccccEEEEEEcccccccHHHHHHHHcccccEEccccccccccEEEEEcccccEEEcc
ccEEEEcccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHccccEccHHHcccEEEEEEcccEEcccccEEccccccHHHHHHHHccEEEEEEEEEHHHEccccccccccccEEEEccHHHHHHHHHHHHHHHcccccEEEEcccccEEEEccccEEEEEEcccccccHHHHHHHHHccccEEEccEEHccccEEEEEcccccEEEEc
mtslsflptlhhstsahflprapkslrpraisikaqavpaltqDDLKKLAADKAVDYVKSGmalglgtgsTAAFVVDRIGQLLktgelrdivgiptskrteEQAKslniplttlddhpsldlaidgadevdpelnlvkgrggALLREKMVEAASKSFVVVADEsklvsglggsklampVEVVQFCWKFNLVRLQDLFRELGCEAklregengkpyitdnFNYIIDLYFetpikdgvsagteigkLEGVVEHGLFLDMATAVIIAGKtgvevksk
mtslsflptlhhstsahflprapkSLRPRAISIKaqavpaltqdDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLlktgelrdivgiptskrteeqakslniplttlddhPSLDLAIDgadevdpelNLVKGRGGALLREKMVEAASKSFVVVADESKLVsglggsklamPVEVVQFCWKFNLVRLQDLFRELGCEaklregengkpyiTDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAgktgvevksk
MTSLSFLPTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK
***********************************QAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP************************LDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG******
*******PTLHHSTSAH*****************************KKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV**K**
MTSLSFLPTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK
*TSLSF**TLHH***************************ALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSLSFLPTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9ZU38265 Probable ribose-5-phospha no no 0.854 0.883 0.636 1e-82
B8FL28230 Ribose-5-phosphate isomer yes no 0.810 0.965 0.504 2e-54
Q2JSC9230 Ribose-5-phosphate isomer yes no 0.810 0.965 0.508 2e-53
A7NNA4234 Ribose-5-phosphate isomer yes no 0.791 0.927 0.497 2e-51
Q81CG8220 Ribose-5-phosphate isomer yes no 0.791 0.986 0.455 2e-50
Q736S8220 Ribose-5-phosphate isomer yes no 0.791 0.986 0.455 1e-48
Q81PL1220 Ribose-5-phosphate isomer yes no 0.791 0.986 0.455 2e-48
Q63AF7220 Ribose-5-phosphate isomer yes no 0.791 0.986 0.455 2e-48
Q6HHU6220 Ribose-5-phosphate isomer yes no 0.791 0.986 0.451 3e-48
A9VID8221 Ribose-5-phosphate isomer yes no 0.791 0.981 0.455 4e-48
>sp|Q9ZU38|RPIA_ARATH Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1 Back     alignment and function desciption
 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/234 (63%), Positives = 188/234 (80%)

Query: 41  LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
           LTQD+LK++AA KAV++V+SGM LGLGTGSTA   VDRIG+LL+ G+L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
           +EQA SL IPL+ LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E ASK FVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
            D+SK+V  +GGSKLA+PVE+V FCWKF   +L+ L    GCEA LR GE GK ++TDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
           NYI+D++ E  + D  +    I +L GVVEHG+FLDMA+ VIIAG+ GV++K+K
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 6
>sp|B8FL28|RPIA_DESAA Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q2JSC9|RPIA_SYNJA Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|A7NNA4|RPIA_ROSCS Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q81CG8|RPIA_BACCR Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q736S8|RPIA_BACC1 Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q81PL1|RPIA_BACAN Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q63AF7|RPIA_BACCZ Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q6HHU6|RPIA_BACHK Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|A9VID8|RPIA_BACWK Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
224130670290 predicted protein [Populus trichocarpa] 0.963 0.910 0.776 1e-116
224125628287 predicted protein [Populus trichocarpa] 0.959 0.916 0.781 1e-115
255542320284 ribose-5-phosphate isomerase, putative [ 0.963 0.929 0.757 1e-113
225451299283 PREDICTED: probable ribose-5-phosphate i 0.970 0.939 0.749 1e-112
449442917283 PREDICTED: probable ribose-5-phosphate i 0.941 0.911 0.752 1e-107
449482964283 PREDICTED: LOW QUALITY PROTEIN: probable 0.941 0.911 0.749 1e-106
255640161281 unknown [Glycine max] 0.963 0.939 0.725 1e-106
357512271280 Chloroplast ribose-5-phosphate isomerase 0.959 0.939 0.725 1e-106
356505937281 PREDICTED: probable ribose-5-phosphate i 0.963 0.939 0.725 1e-106
388508946280 unknown [Medicago truncatula] 0.959 0.939 0.725 1e-105
>gi|224130670|ref|XP_002328347.1| predicted protein [Populus trichocarpa] gi|222838062|gb|EEE76427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/269 (77%), Positives = 236/269 (87%), Gaps = 5/269 (1%)

Query: 11  HHST-SAHFLPRAPKSL----RPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALG 65
           HH+T S+  L     SL    R +  SIKAQ+ P LTQDDLKKLAADKAV+YVKSGM LG
Sbjct: 22  HHTTPSSSRLTLCTPSLNVRTRTKISSIKAQSAPVLTQDDLKKLAADKAVEYVKSGMVLG 81

Query: 66  LGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAID 125
           LGTGSTAAFVV ++G+LLKTGEL+DI+G+PTSKRTEEQA+SLNIPL+ LDDHP +DLAID
Sbjct: 82  LGTGSTAAFVVAKLGELLKTGELKDIIGVPTSKRTEEQARSLNIPLSVLDDHPHIDLAID 141

Query: 126 GADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFC 185
           GADEVDP LNLVKGRGGALLREKMVEAAS  FVVVAD++K+V GLGGSKLAMPVEVVQFC
Sbjct: 142 GADEVDPLLNLVKGRGGALLREKMVEAASDEFVVVADDTKVVDGLGGSKLAMPVEVVQFC 201

Query: 186 WKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKL 245
           WK+NL+RLQ++F++ G EAKLR GE+GKPY+TDNFNYI+DLYFE PIKDG +AG EI  L
Sbjct: 202 WKYNLLRLQEMFKDEGVEAKLRAGEDGKPYVTDNFNYIVDLYFENPIKDGYAAGKEISGL 261

Query: 246 EGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
           EGVVEHGLFLDMATAVIIAGKTGVEVKSK
Sbjct: 262 EGVVEHGLFLDMATAVIIAGKTGVEVKSK 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125628|ref|XP_002319636.1| predicted protein [Populus trichocarpa] gi|222858012|gb|EEE95559.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255542320|ref|XP_002512223.1| ribose-5-phosphate isomerase, putative [Ricinus communis] gi|223548184|gb|EEF49675.1| ribose-5-phosphate isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225451299|ref|XP_002278297.1| PREDICTED: probable ribose-5-phosphate isomerase [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442917|ref|XP_004139227.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482964|ref|XP_004156456.1| PREDICTED: LOW QUALITY PROTEIN: probable ribose-5-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255640161|gb|ACU20371.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357512271|ref|XP_003626424.1| Chloroplast ribose-5-phosphate isomerase [Medicago truncatula] gi|355501439|gb|AES82642.1| Chloroplast ribose-5-phosphate isomerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356505937|ref|XP_003521745.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|388508946|gb|AFK42539.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2084898276 EMB3119 "EMBRYO DEFECTIVE 3119 0.996 0.989 0.696 5.2e-97
TAIR|locus:2038801265 RPI2 "ribose-5-phosphate isome 0.854 0.883 0.636 7.1e-77
TAIR|locus:2026296267 RSW10 "RADIAL SWELLING 10" [Ar 0.854 0.876 0.619 2.3e-71
TIGR_CMR|BA_2791220 BA_2791 "ribose 5-phosphate is 0.791 0.986 0.455 3.8e-46
TIGR_CMR|SPO_1327262 SPO_1327 "ribose 5-phosphate i 0.813 0.851 0.427 6.1e-39
DICTYBASE|DDB_G0276711232 rpiA "ribose-5-phosphate isome 0.824 0.974 0.399 6.5e-35
ZFIN|ZDB-GENE-041114-24275 rpia "ribose 5-phosphate isome 0.912 0.909 0.371 1.3e-34
UNIPROTKB|F1P520235 RPIA "Uncharacterized protein" 0.824 0.961 0.395 3.6e-34
CGD|CAL0000757263 RKI1 [Candida albicans (taxid: 0.817 0.851 0.4 5.8e-34
RGD|1311377303 Rpia "ribose 5-phosphate isome 0.824 0.745 0.391 5.8e-34
TAIR|locus:2084898 EMB3119 "EMBRYO DEFECTIVE 3119" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 193/277 (69%), Positives = 226/277 (81%)

Query:     1 MTSLSFLPTLHHSTSAHFLPRAPKSLRPR---AISIKAQAVPALTQDDLKKLAADKAVDY 57
             M SLSF+ + H +     +        PR   + S+KAQ+V AL+QDDLKKLAA+KAV+ 
Sbjct:     1 MASLSFVSSSHLTLRTPSIALRSTGSSPRTSVSFSVKAQSV-ALSQDDLKKLAAEKAVEA 59

Query:    58 VKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDH 117
             +K GM LGLGTGSTAAF VD+IG+LL +GEL DIVGIPTSKRTEEQA+SL IPL  LD H
Sbjct:    60 IKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQARSLGIPLVGLDTH 119

Query:   118 PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAM 177
             P +DLAIDGADEVDP L+LVKGRGGALLREKMVEA +  F+VVAD++KLV+GLGGS LAM
Sbjct:   120 PRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTKLVTGLGGSGLAM 179

Query:   178 PVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVS 237
             PVEVVQFCW FNL+RLQDLF+E GCE+KLR   +GKPY+TDN NYIIDLYF+TP+KDG +
Sbjct:   180 PVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIIDLYFKTPLKDGFA 239

Query:   238 AGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
             A  EIGK +GVVEHGLFL MAT+VIIAGK GVEV +K
Sbjct:   240 AAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276
GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA
GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0019253 "reductive pentose-phosphate cycle" evidence=NAS
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2038801 RPI2 "ribose-5-phosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026296 RSW10 "RADIAL SWELLING 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2791 BA_2791 "ribose 5-phosphate isomerase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1327 SPO_1327 "ribose 5-phosphate isomerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276711 rpiA "ribose-5-phosphate isomerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-24 rpia "ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P520 RPIA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
CGD|CAL0000757 RKI1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
RGD|1311377 Rpia "ribose 5-phosphate isomerase A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B6JE08RPIA_OLICO5, ., 3, ., 1, ., 60.42790.83570.9703yesno
Q139E9RPIA_RHOPS5, ., 3, ., 1, ., 60.44580.81750.9655yesno
Q216Q6RPIA_RHOPB5, ., 3, ., 1, ., 60.42060.82480.9741yesno
C1CDH6RPIA_STRZJ5, ., 3, ., 1, ., 60.45210.80650.9735yesno
B8FL28RPIA_DESAA5, ., 3, ., 1, ., 60.50430.81020.9652yesno
Q5M481RPIA_STRT25, ., 3, ., 1, ., 60.48240.80290.9734yesno
B3QCR0RPIA_RHOPT5, ., 3, ., 1, ., 60.44580.81750.9655yesno
A7HS32RPIA_PARL15, ., 3, ., 1, ., 60.45720.82110.9740yesno
Q8EN78RPIA1_OCEIH5, ., 3, ., 1, ., 60.42420.80290.9821yesno
Q03KJ8RPIA_STRTD5, ., 3, ., 1, ., 60.48240.80290.9734yesno
Q5LZM5RPIA_STRT15, ., 3, ., 1, ., 60.48240.80290.9734yesno
Q8G0S7RPIA_BRUSU5, ., 3, ., 1, ., 60.44340.81750.9655yesno
Q8YH30RPIA_BRUME5, ., 3, ., 1, ., 60.44340.81750.9655yesno
O50083RPIA_PYRHO5, ., 3, ., 1, ., 60.42420.81750.9781yesno
Q6N8C3RPIA_RHOPA5, ., 3, ., 1, ., 60.44580.81750.9655yesno
Q07Q53RPIA_RHOP55, ., 3, ., 1, ., 60.42480.82480.9377yesno
A8LIN0RPIA_DINSH5, ., 3, ., 1, ., 60.45170.80290.8461yesno
Q9V0L6RPIA_PYRAB5, ., 3, ., 1, ., 60.43720.81750.9781yesno
Q2JSC9RPIA_SYNJA5, ., 3, ., 1, ., 60.50860.81020.9652yesno
B8ZNH8RPIA_STRPJ5, ., 3, ., 1, ., 60.45210.80650.9735yesno
Q2IUM8RPIA_RHOP25, ., 3, ., 1, ., 60.43290.81750.9655yesno
B8G2V0RPIA_CHLAD5, ., 3, ., 1, ., 60.45370.80650.9324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.60.914
3rd Layer5.3.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.70.218.1
hypothetical protein (264 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_I2289
SubName- Full=Putative uncharacterized protein; (226 aa)
•    •• 0.931
estExt_Genewise1_v1.C_1290095
ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa)
•    •• 0.931
estExt_Genewise1_v1.C_LG_XIV0740
transketolase (EC-2.2.1.1) (635 aa)
     •• 0.921
fgenesh4_pm.C_LG_X000906
transketolase (EC-2.2.1.1) (656 aa)
     •• 0.918
eugene3.00021349
SubName- Full=Putative uncharacterized protein; (745 aa)
     •• 0.918
gw1.29.190.1
ribose-phosphate diphosphokinase (EC-2.7.6.1) (340 aa)
•    •• 0.903
estExt_Genewise1_v1.C_LG_III2205
SubName- Full=Putative uncharacterized protein; (405 aa)
     •  0.901
estExt_Genewise1_v1.C_290458
phosphoribulokinase (EC-2.7.1.19) (405 aa)
     •  0.901
grail3.0008041101
phosphogluconate dehydrogenase (decarboxylating) (EC-1.1.1.44) (495 aa)
     •• 0.900
estExt_fgenesh4_pm.C_LG_IV0341
phosphogluconate dehydrogenase (decarboxylating) (EC-1.1.1.44) (489 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02384264 PLN02384, PLN02384, ribose-5-phosphate isomerase 1e-121
cd01398213 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomeras 2e-99
TIGR00021218 TIGR00021, rpiA, ribose 5-phosphate isomerase 6e-99
PRK00702220 PRK00702, PRK00702, ribose-5-phosphate isomerase A 1e-98
COG0120227 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbo 1e-88
pfam06026172 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isom 2e-83
PRK13978228 PRK13978, PRK13978, ribose-5-phosphate isomerase A 2e-52
pfam00455162 pfam00455, DeoRC, DeoR C terminal sensor domain 4e-05
cd00458169 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar 3e-04
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase Back     alignment and domain information 
 Score =  345 bits (886), Expect = e-121
 Identities = 157/238 (65%), Positives = 186/238 (78%), Gaps = 1/238 (0%)

Query: 38  VPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS 97
              LTQD+LKK+AA KAV++V+SGM LGLGTGSTA   VDRIG+LL+ G+L++I+GIPTS
Sbjct: 27  PVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS 86

Query: 98  KRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSF 157
           K+T EQA SL IPL+ LD HP +DLAIDGADEVDP LNLVKGRGG+LLREKM+E A K F
Sbjct: 87  KKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKF 146

Query: 158 VVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYI 216
           VV+ DESKLV  +GGS LAMPVEVV FCWKF   +LQ LF   GC AKLR   NG +P++
Sbjct: 147 VVIVDESKLVKHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFV 206

Query: 217 TDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
           TDN NYI+DLYF+  I D   A   I +L GVVEHG+FLDMAT VI+AG+ GV +K K
Sbjct: 207 TDNGNYIVDLYFKRDIGDLKVASDAILRLAGVVEHGMFLDMATTVIVAGELGVTIKDK 264

Length = 264
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase Back     alignment and domain information
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Back     alignment and domain information
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain Back     alignment and domain information
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PLN02384264 ribose-5-phosphate isomerase 100.0
PRK13978228 ribose-5-phosphate isomerase A; Provisional 100.0
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 100.0
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 100.0
KOG3075261 consensus Ribose 5-phosphate isomerase [Carbohydra 100.0
PF06026173 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (ph 100.0
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 99.91
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 99.88
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 99.87
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 99.87
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 99.87
PRK10411240 DNA-binding transcriptional activator FucR; Provis 99.86
PRK13509251 transcriptional repressor UlaR; Provisional 99.85
COG1349253 GlpR Transcriptional regulators of sugar metabolis 99.85
PRK08335275 translation initiation factor IF-2B subunit alpha; 98.12
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 98.08
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 98.08
PRK08535310 translation initiation factor IF-2B subunit delta; 98.06
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 98.03
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 98.02
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 97.71
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 97.54
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 97.53
PRK05772363 translation initiation factor IF-2B subunit alpha; 97.49
KOG1466313 consensus Translation initiation factor 2B, alpha 97.46
PRK06036339 translation initiation factor IF-2B subunit alpha; 97.39
PRK06372253 translation initiation factor IF-2B subunit delta; 97.34
PRK06371329 translation initiation factor IF-2B subunit alpha; 97.32
PRK08334356 translation initiation factor IF-2B subunit beta; 97.11
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 96.17
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 95.93
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 95.92
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 95.75
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 95.73
KOG1465353 consensus Translation initiation factor 2B, beta s 95.36
COG2390321 DeoR Transcriptional regulator, contains sigma fac 95.32
COG1788220 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, 95.2
TIGR01584 492 citF citrate lyase, alpha subunit. This is a model 94.72
TIGR03458 485 YgfH_subfam succinate CoA transferases. A closely 94.6
PF04223 466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 92.93
PRK15418318 transcriptional regulator LsrR; Provisional 92.51
PF02550198 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase 92.29
PF04223466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 92.06
KOG1467556 consensus Translation initiation factor 2B, delta 91.24
COG3051 513 CitF Citrate lyase, alpha subunit [Energy producti 89.59
COG0427 501 ACH1 Acetyl-CoA hydrolase [Energy production and c 89.07
TIGR01584492 citF citrate lyase, alpha subunit. This is a model 88.79
COG0182346 Predicted translation initiation factor 2B subunit 88.27
PF0392779 NapD: NapD protein; InterPro: IPR005623 This entry 88.15
PF0103774 AsnC_trans_reg: AsnC family; InterPro: IPR019887 T 84.76
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information 
Probab=100.00  E-value=6.9e-70  Score=495.54  Aligned_cols=236  Identities=67%  Similarity=1.040  Sum_probs=221.2

Q ss_pred             cCCChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCC
Q 023993           39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHP  118 (274)
Q Consensus        39 ~~~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~  118 (274)
                      -+|+++++|+++|++|++||++||+||||||||+.+++++|++++++|++.++++||+|.+|+.+|+++||+++.++++.
T Consensus        28 ~~m~~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~  107 (264)
T PLN02384         28 VILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHP  107 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHHcCCcEeccccCC
Confidence            34677888999999999999999999999999999999999999887777789999999999999999999999999999


Q ss_pred             cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHh
Q 023993          119 SLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFR  198 (274)
Q Consensus       119 ~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~  198 (274)
                      ++|+||||||+||+++++|||||||++|||+++++|+++|+|+|+||++++||..++||||||+|++|.+|.++|+++|.
T Consensus       108 ~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V~~Lg~~~~plPVEV~p~a~~~v~~~L~~l~~  187 (264)
T PLN02384        108 VVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFTAEKLQSLFE  187 (264)
T ss_pred             cccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCcceecccCCCCCCEEEEECccHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999997435899999999999999999999877


Q ss_pred             hcCCeeEEeecCCC-CceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEecC
Q 023993          199 ELGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK  274 (274)
Q Consensus       199 ~~g~~~~lR~~~~~-gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~~  274 (274)
                      +.|+.+++|++.++ +|++|||||||+||+|+.++.||++++++|++||||||||||.++++.+++|+++|+++..|
T Consensus       188 ~~g~~~~lR~~~~g~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ipGVVE~GLF~~~a~~vivg~~~Gv~~~~~  264 (264)
T PLN02384        188 YAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLAGVVEHGMFLDMATTVIVAGELGVTIKDK  264 (264)
T ss_pred             ccCCceEEeccCCCCCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCCCcEeccCcccCcCCEEEEEcCCceEEeCC
Confidence            76889999987656 89999999999999997449999999999999999999999999999999999999887654

>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway [] Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>TIGR03458 YgfH_subfam succinate CoA transferases Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion] Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC Back     alignment and domain information
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2f8m_A244 Ribose 5-Phosphate Isomerase From Plasmodium Falcip 3e-56
1lk5_A229 Structure Of The D-Ribose-5-Phosphate Isomerase Fro 2e-44
3l7o_A225 Crystal Structure Of Ribose-5-Phosphate Isomerase A 2e-43
1uj5_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 2e-42
1uj4_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 4e-41
4gmk_A228 Crystal Structure Of Ribose 5-Phosphate Isomerase F 8e-40
3ixq_A226 Structure Of Ribose 5-Phosphate Isomerase A From Me 4e-35
3hhe_A255 Crystal Structure Of Ribose-5-Phosphate Isomerase A 3e-34
1xtz_A264 Crystal Structure Of The S. Cerevisiae D-Ribose-5-P 2e-28
1m0s_A219 Northeast Structural Genomics Consortium (Nesg Id I 2e-25
3kwm_A224 Crystal Structure Of Ribose-5-Isomerase A Length = 4e-25
3u7j_A239 Crystal Structure Of Ribose-5-Phosphate Isomerase A 1e-24
1ks2_A219 Crystal Structure Analysis Of The Rpia, Structural 1e-24
1lkz_A219 Crystal Structure Of D-Ribose-5-Phosphate Isomerase 2e-24
3enq_A235 Substrate And Inhibitor Complexes Of Ribose 5-Phosp 3e-24
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum Length = 244 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 156/227 (68%), Gaps = 2/227 (0%)
Query: 43  QDDLKKLAADKAVD-YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
            D LKK+ A KAVD YV+S M +GLGTGST  +V++RI  LLK+G+L+D+V IPTS  TE
Sbjct: 9   MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTE 68
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
            +A+ L IPLTTL+ H ++D+ IDG DE+D  LNL+KGRGGAL+REK+V ++S   +++ 
Sbjct: 69  LKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIG 128
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
           DESKL +   G   A+P+E++ F ++  +  L  ++   GC  K+R+  NG+ +ITDN N
Sbjct: 129 DESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRK-RNGEIFITDNKN 187
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 268
           YI+D +F  PI+D +   T I    GVV+HG+F++M    +I+   G
Sbjct: 188 YIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDG 234
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii Length = 229 Back     alignment and structure
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Streptococcus Mutans Ua159 Length = 225 Back     alignment and structure
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed With Ribose-5-Phosphate Length = 227 Back     alignment and structure
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-phosphate Isomerase Length = 227 Back     alignment and structure
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The Probiotic Bacterium Lactobacillus Salivarius Ucc118 Length = 228 Back     alignment and structure
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From Methanocaldococcus Jannaschii Length = 226 Back     alignment and structure
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Bartonella Henselae Length = 255 Back     alignment and structure
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae D-Ribose-5-Phosphate Isomerase: Comparison With The Archeal And Bacterial Enzymes Length = 264 Back     alignment and structure
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21) Length = 219 Back     alignment and structure
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A Length = 224 Back     alignment and structure
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis Length = 239 Back     alignment and structure
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural Genomics, Protein Ec1268. Length = 219 Back     alignment and structure
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia) From Escherichia Coli. Length = 219 Back     alignment and structure
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate Isomerase A From Vibrio Vulnificus Yj016 Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 1e-116
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 1e-114
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 1e-110
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 1e-110
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 1e-109
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 1e-106
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 1e-104
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 1e-102
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 1e-102
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 1e-101
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Length = 244 Back     alignment and structure
 Score =  333 bits (857), Expect = e-116
 Identities = 109/235 (46%), Positives = 159/235 (67%), Gaps = 3/235 (1%)

Query: 42  TQDDLKKLAADKAVD-YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
             D LKK+ A KAVD YV+S M +GLGTGST  +V++RI  LLK+G+L+D+V IPTS  T
Sbjct: 8   HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67

Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
           E +A+ L IPLTTL+ H ++D+ IDG DE+D  LNL+KGRGGAL+REK+V ++S   +++
Sbjct: 68  ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127

Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
            DESKL +   G   A+P+E++ F ++  +  L  ++   GC  K+R+  NG+ +ITDN 
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKR-NGEIFITDNK 186

Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVKSK 274
           NYI+D +F  PI+D +   T I    GVV+HG+F++M    +I+   G V   +K
Sbjct: 187 NYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Length = 229 Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Length = 255 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Length = 227 Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Length = 225 Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Length = 239 Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Length = 219 Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Length = 219 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Length = 224 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 100.0
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 100.0
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 100.0
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 100.0
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 100.0
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 100.0
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 100.0
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 100.0
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 100.0
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 100.0
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 100.0
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 100.0
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 99.27
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 97.98
3a11_A338 Translation initiation factor EIF-2B, delta subun; 97.91
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 97.85
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 97.71
2o0m_A345 Transcriptional regulator, SORC family; structural 97.66
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 97.6
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 97.54
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 97.48
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 97.47
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 97.33
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 97.31
3rrl_B207 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 97.29
1k6d_A220 Acetate COA-transferase alpha subunit; structural 97.24
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 97.11
3d3u_A 439 4-hydroxybutyrate COA-transferase; alpha-beta prot 96.81
3qli_A 455 Coenzyme A transferase; COEN transferase; 1.90A {Y 96.69
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 96.16
1poi_A317 Glutaconate coenzyme A-transferase; COA, glutamate 96.14
1xr4_A 509 Putative citrate lyase alpha chain/citrate-ACP TR; 96.09
4eu9_A 514 Succinyl-COA:acetate coenzyme A transferase; HET: 96.02
3nze_A267 Putative transcriptional regulator, sugar-binding; 95.91
2oas_A 436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 95.91
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 95.88
3eh7_A 434 4-hydroxybutyrate COA-transferase; citrate lyase, 95.85
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 95.7
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 95.49
2ahu_A 531 Putative enzyme YDIF; COA transferase, glutamyl th 95.4
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 95.39
1xr4_A509 Putative citrate lyase alpha chain/citrate-ACP TR; 95.23
2hj0_A 519 Putative citrate lyase, ALFA subunit; alpha beta p 94.64
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 94.44
3k6m_A481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 94.38
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 94.17
2ahu_A531 Putative enzyme YDIF; COA transferase, glutamyl th 93.43
2gnp_A266 Transcriptional regulator; structural genomics, MC 93.24
3gk7_A448 4-hydroxybutyrate COA-transferase; alpha/beta prot 92.14
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 92.02
2r5f_A264 Transcriptional regulator, putative; transcription 90.56
2oas_A436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 89.11
3k6m_A 481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 84.83
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 84.78
3qli_A455 Coenzyme A transferase; COEN transferase; 1.90A {Y 84.04
1stz_A338 Heat-inducible transcription repressor HRCA homol; 82.06
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
Probab=100.00  E-value=6.4e-72  Score=499.58  Aligned_cols=225  Identities=43%  Similarity=0.677  Sum_probs=216.4

Q ss_pred             CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcc
Q 023993           41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSL  120 (274)
Q Consensus        41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~i  120 (274)
                      .+|+++|+++|++|++||+|||+||||||||+.+|+++|+++++++++ ++++||+|.+++.+++++||++..++++.++
T Consensus         2 ~~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~i   80 (228)
T 4gmk_A            2 PNQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHI   80 (228)
T ss_dssp             CHHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCE
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCcc
Confidence            368999999999999999999999999999999999999998887777 7999999999999999999999999999999


Q ss_pred             cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhc
Q 023993          121 DLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL  200 (274)
Q Consensus       121 D~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~  200 (274)
                      |+|||||||||+++++|||||||++|||+++++|+++|+|+|+||++++||  +|||||||+||+|.+|.++|+++    
T Consensus        81 D~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG--~fplPVEVip~a~~~v~~~l~~l----  154 (228)
T 4gmk_A           81 DLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLG--QFPLPVEVIPYGSGTVFKRFEEK----  154 (228)
T ss_dssp             EEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----
T ss_pred             ceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccC--CeeEEEEEehhhHHHHHHHHHHc----
Confidence            999999999999999999999999999999999999999999999999997  69999999999999999999997    


Q ss_pred             CCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEec
Q 023993          201 GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS  273 (274)
Q Consensus       201 g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~  273 (274)
                      |+++.+|+..+++|++|||||||+||+|.. +.||.+++++|++||||||||||.++|+.+++|+++|+++++
T Consensus       155 G~~~~~R~~~~g~~~vTDnGN~IlD~~~~~-i~dp~~l~~~L~~i~GVVe~GLF~~~a~~vivg~~dGv~~l~  226 (228)
T 4gmk_A          155 GLNPEFRKNEDGSLLHTDSDNYIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLE  226 (228)
T ss_dssp             TCCEEECBCTTSSBCCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEE
T ss_pred             CCceeecccCCCCeEEecCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeeeeecCCCCEEEEEeCCCcEEEe
Confidence            999999987666899999999999999985 999999999999999999999999999999999999999886
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1lk5a1149 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate 1e-38
d1o8ba1124 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphat 2e-35
d1uj4a1151 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate 1e-32
d1m0sa1147 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate 3e-30
d1lk5a280 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomera 2e-17
d1m0sa272 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera 5e-17
d1o8ba272 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera 2e-14
d1uj4a274 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomera 1e-13
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  130 bits (327), Expect = 1e-38
 Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 6/154 (3%)

Query: 41  LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
           +  +++KK+AA +A+ +++  M +GLGTGST A+ +  +G+ LK GE+ DIVG+PTS + 
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
           +  A   +IP+ +LD   ++D+A+DGADEVDP LNL+KGRG AL  EK++E  + +F+V+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQ 194
            DE KLV  L         ++V    +  + +L+
Sbjct: 121 VDERKLVDYLD------IADIVIVGTREGVKKLE 148
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147 Back     information, alignment and structure
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 80 Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Length = 72 Back     information, alignment and structure
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Length = 72 Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1o8ba1124 D-ribose-5-phosphate isomerase (RpiA), catalytic d 100.0
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.98
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1lk5a280 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.96
d1o8ba272 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.95
d1uj4a274 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.94
d1m0sa272 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.94
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 97.9
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 97.54
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 97.24
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 97.23
d1poib_260 Glutaconate:CoA transferase beta {Acidaminococcus 96.82
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 96.58
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 96.24
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 96.06
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 96.02
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 95.88
d2ahua1247 Putative enzyme YdiF C-terminal domain {Escherichi 95.73
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 95.7
d1xr4a1236 Putative citrate lyase alpha chain, citF2 {Salmone 95.46
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 95.25
d1poia_317 Glutaconate:CoA transferase alpha {Acidaminococcus 95.18
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 95.15
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 92.42
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 92.07
d1xr4a2269 Putative citrate lyase alpha chain, citF2 {Salmone 91.71
d1ooya1221 Succinate:CoA transferase, C-terminal domain {Pig 90.81
d1i1ga280 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 90.39
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 86.13
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-37  Score=249.20  Aligned_cols=123  Identities=33%  Similarity=0.471  Sum_probs=86.6

Q ss_pred             EEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcccEEEEccCcccCCCCcccCcch
Q 023993           63 ALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGG  142 (274)
Q Consensus        63 vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD~afdGaD~Vd~~~~~ikg~gg  142 (274)
                      +||||||||+.+++++|+++..    ....+||+|.+++.+|+++|+++.+++...++|+||||||+||++++++|||||
T Consensus         1 VvGlGtGSTv~~~i~~L~~~~~----~~~~~V~tS~~t~~~~~~~gi~~~~l~~~~~iDi~iDGADevd~~l~lIKGGGg   76 (124)
T d1o8ba1           1 IVGVGTGSTAAHFIDALGTMKG----QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGA   76 (124)
T ss_dssp             CEEECCSCC-------------------CCEEESCCC------------CCGGGCSCEEEEEECCSEECTTSCEECCCCC
T ss_pred             CEEecchHHHHHHHHHHHhhhC----CcceEEcChHHHHHHHHHcCCCccChhhCCceeEEecchhhcCCCceehhhCCc
Confidence            5899999999999999997622    245699999999999999999999999989999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHH
Q 023993          143 ALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFN  189 (274)
Q Consensus       143 a~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v  189 (274)
                      |++|||+++++|+++|+|+|+||++++||+...|+||||+|+||++|
T Consensus        77 al~rEKivA~~A~~~i~I~DesK~V~~Lg~~~~PVevev~p~a~~~V  123 (124)
T d1o8ba1          77 ALTREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDGVKTI  123 (124)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEGGGBCSSBCSSCCSEEEEEETTEEEEE
T ss_pred             cchHHHHHHHhcCcEEEEEeCCceecccCCCCCcEEEEEcccchhhc
Confidence            99999999999999999999999999997433466666679999765
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure