Citrus Sinensis ID: 023996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEcccccEEEEEEccEEcccccccccccccEEEEcccccccccccccccccccccEEEEEEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEEccccccccccHHHHHHccccccEEEEEcccccccccccccccHcccccEEccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meelppgyrffpteEELVSFYLINKLEGKRQELHRVIPVIrlyeiepwhlpklcgekcqgdteqwffftprqereerggrpsrttasgywkatgspsyvyssdnrvigVKKTMVFykgkaptgrktkwKMHEYRAiegasnpssavipkLRHEFSLCRIyvksesfrafdrrpleaarreeqphgggattsapnnimvrgngsntsfqdaimcdgdvattsaqnnimgprasspetsysgedhsdypetnldnnwnivadpqpplwdweqlnwp
Flexible Loop (DISEMBL)
meelppgyrffpteeELVSFYLINklegkrqeLHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFtprqereerggrpsrttasgywkatgspsyvyssdnrviGVKKTMvfykgkaptgrktkwKMHEYRAIegasnpssaviPKLRHEFSLCRiyvksesfrafdrrPLEAArreeqphgggattsapnniMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGEDHSDYPETNLDNNWNIVADPqpplwdweqlnwp
Low Complexity Region (SEG)
MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQereerggrPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP
Disordered region (IsUnstruct)
*******YRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFT*******************YWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIE*******AVIPKLRHEFSLCRIYVKSESFR*************************************************************************************NNWNIVADPQPPLWDWEQ****
Disordered Region (DISOPRED)
*EELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAI****************EFSLCRIYVK****************************************************************************************************PPLWDWEQLNWP
Disordered Region (DISEMBL)
MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPR**************ASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLE*************TTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPR**************DYPETNLDNNWNIVADPQPPLWDWEQLNWP
Disordered Region (DISPRO)
**ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGA******VIPKLRHEFSLCRIYVKSE*****************************************************************************************NWNIVADPQPPLWDWEQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9FMR3	235	NAC domain-containing pro	yes	no	0.846	0.987	0.518	8e-72
Q9M290	228	Putative NAC domain-conta	no	no	0.810	0.973	0.472	4e-61
Q93VY3	297	NAC domain-containing pro	no	no	0.620	0.572	0.440	2e-35
Q9LDY8	317	NAC domain-containing pro	no	no	0.602	0.520	0.446	2e-32
Q9C932	317	NAC domain-containing pro	no	no	0.547	0.473	0.457	1e-31
Q52QH4	318	NAC domain-containing pro	no	no	0.748	0.644	0.367	5e-31
O49255	268	NAC transcription factor	no	no	0.558	0.570	0.433	2e-30
Q8GY42	323	NAC transcription factor	no	no	0.602	0.510	0.423	2e-30
A0SPJ6	396	NAC transcription factor	N/A	no	0.799	0.553	0.333	2e-30
Q9FWX2	395	NAC domain-containing pro	no	no	0.459	0.318	0.481	6e-30

>sp|Q9FMR3|NAC90_ARATH NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/274 (51%), Positives = 171/274 (62%), Gaps = 42/274 (15%)

Query: 2   EELPPGYRFFPTEEELVSFYLINKLEGKRQE-LHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
           +E+  G+RF+PTEEELVSFYL N+LEG+  + +HRVIPV+ ++E+EP HLP + G +C+G
Sbjct: 3   DEVTIGFRFYPTEEELVSFYLRNQLEGRSDDSMHRVIPVLDVFEVEPSHLPNVAGVRCRG 62

Query: 61  DTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
           D EQWFFF PRQERE RGGRPSRTT SGYWKATGSP  V+S DN++IG KKTMVFY GKA
Sbjct: 63  DAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKA 122

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARRE 180
           PTGRKTKWKM+EY A++   N S+  IPKLR EFSLCR+Y+ + S RAFDRRP       
Sbjct: 123 PTGRKTKWKMNEYHAVDETVNAST--IPKLRREFSLCRVYITTGSSRAFDRRP------- 173

Query: 181 EQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSG 240
                                      Q   M   DVA       +     SS ETS SG
Sbjct: 174 -----------------------EGVLQTERMLTSDVAVAETSFRV----ESSLETSISG 206

Query: 241 EDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP 274
            +H D     +  N   V     P+WDWEQL WP
Sbjct: 207 GEHID-----VSMNTEFVDGLSEPMWDWEQLTWP 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M290|NAC61_ARATH Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 161/275 (58%), Gaps = 53/275 (19%)

Query: 2   EELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGD 61
           EEL  G+RF+PTE EL+++YL  +L G    +H +IP++ ++ +EP  LP L GE+C+GD
Sbjct: 3   EELSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGD 62

Query: 62  TEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
            EQW FF PRQERE RGGRPSRTT SGYWKATGSP  V+S DNRVIGVKKTMVFY GKAP
Sbjct: 63  AEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAP 122

Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
           TGRKTKWKM+EY+A+E A   S + IP             KS S RAFDRRP EA   E 
Sbjct: 123 TGRKTKWKMNEYKAVETA---SVSTIP-------------KSGSSRAFDRRPTEAYAIER 166

Query: 182 QPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGE 241
                G  TS+   I                                  ++SPETS+SG 
Sbjct: 167 NLPSNGVETSSRATI----------------------------------STSPETSHSGG 192

Query: 242 DHSDYP---ETNLDNNWNIVADPQPPLWDWEQLNW 273
           +  D P    T   +  ++V +   P W+WEQ+NW
Sbjct: 193 NQVDLPVNATTITQSISDMVDELSQPFWEWEQMNW 227

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 14/184 (7%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
           LPPG+RF+PT+EEL+  YL  K+ G    L +VI  I LY+ +PW LP   L GEK    
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEK---- 68

Query: 62  TEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
             +W+FF+PR  +   G RP+R   SGYWKATG+   + ++D R +G+KK +VFY GKAP
Sbjct: 69  --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-TADGRRVGIKKALVFYAGKAP 125

Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
            G KT W MHEYR IE + +  S+ +     ++ LCRIY K+   +     P++A R E 
Sbjct: 126 KGTKTNWIMHEYRLIEHSRSHGSSKL----DDWVLCRIYKKTSGSQRQAVTPVQACREEH 181

Query: 182 QPHG 185
             +G
Sbjct: 182 STNG 185

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 105/179 (58%), Gaps = 14/179 (7%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
           LPPG+RF+PT+EEL+  YL  K  G    L ++I  I LY+ +PW LP   L GEK    
Sbjct: 14  LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-QLIAEIDLYKFDPWVLPSKALFGEK---- 68

Query: 62  TEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
             +W+FF+PR  +   G RP+R   SGYWKATG+   V S++ R +G+KK +VFY GKAP
Sbjct: 69  --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-VISTEGRRVGIKKALVFYIGKAP 125

Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARRE 180
            G KT W MHEYR IE +    S  +     ++ LCRIY K  S +      L  + RE
Sbjct: 126 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQTSAQKQAYNNLMTSGRE 180

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 100/164 (60%), Gaps = 14/164 (8%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
           LPPG+RF+PT+EEL+  YL  K  G    L ++I  I LY+ +PW LP   L GEK    
Sbjct: 14  LPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKALFGEK---- 68

Query: 62  TEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
             +W+FF+PR  +   G RP+R   SGYWKATG+   + S++ + +G+KK +VFY GKAP
Sbjct: 69  --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 125

Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 165
            G KT W MHEYR IE +    S  +     ++ LCRIY K  S
Sbjct: 126 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 165

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 21/226 (9%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHR-VIPVIRLYEIEPWHLPKLCGEKCQGDT 62
           LPPG+RF PT+EELV  YL  K+   RQ L   +I  + LY+++PW LP    EK     
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVA--RQPLPVPIIAEVDLYKLDPWDLP----EKALFGR 74

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVY-SSDNRVIGVKKTMVFYKGKAP 121
           ++W+FFTPR  +   G RP+R    GYWKATG+   V      R +G+KK +VFY GKAP
Sbjct: 75  KEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAP 134

Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
            G KT W MHEYR  +    P      +   E+ LCR+Y K  ++        E  + E+
Sbjct: 135 RGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNW--------EKVKLEQ 186

Query: 182 QPHGGGATTSAPNNIMVRGNGSNTSFQDAI-----MCDGDVATTSA 222
           Q     A  +  N+    G   + +  D +       D D+   SA
Sbjct: 187 QDVASVAAAAPRNHHHQNGEVMDAAAADTMSDSFQTHDSDIDNASA 232

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 6/159 (3%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
           LPPG+RF PT+EEL+ +YL N+   K   +  +IP + +Y+ +PW LP    EK +    
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPV-SIIPEVDIYKFDPWQLP----EKTEFGEN 63

Query: 64  QWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTG 123
           +W+FF+PR+ +   G RP+R   SGYWKATG+   ++S  + V GVKK +VFYKG+ P G
Sbjct: 64  EWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNV-GVKKALVFYKGRPPKG 122

Query: 124 RKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVK 162
            KT W MHEYR  +     +         E+ LCRIY K
Sbjct: 123 IKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKK 161

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 102/182 (56%), Gaps = 17/182 (9%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
            LPPG+RF PT+EELV  YL  K +     +  +I  I LY+ +PW LP     K     
Sbjct: 15  HLPPGFRFHPTDEELVVHYLKKKADSVPLPV-SIIAEIDLYKFDPWELP----SKASFGE 69

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
            +W+FF+PR  +   G RP+R   SGYWKATG+   +++ ++  +GVKK +VFY GK P 
Sbjct: 70  HEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPPK 129

Query: 123 GRKTKWKMHEYRAIEGASNPSSAVIP---------KLR-HEFSLCRIYVKSESFRAFDRR 172
           G KT W MHEYR  +G  N S+A  P          LR  ++ LCRIY K+ S R    R
Sbjct: 130 GIKTDWIMHEYRLTDG--NLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTMER 187

Query: 173 PL 174
            L
Sbjct: 188 VL 189

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 124/249 (49%), Gaps = 30/249 (12%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
           ELPPG+RF PT+EELV  YL  K   K      +I  + LY+ +PW LP    EK     
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKK-AAKVPLPVTIITEVDLYKFDPWELP----EKATFGE 81

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSD--NRVIGVKKTMVFYKGKA 120
           ++W+FF+PR  +   G RP+R   SGYWKATG+   + +S      +GVKK +VFY+GK 
Sbjct: 82  QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKP 141

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLR----------HEFSLCRIYVKSESFRAFD 170
           P G KT W MHEYR  + +S+ +++  P +            ++ LCRIY K     A D
Sbjct: 142 PKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKINKAAAGD 201

Query: 171 -RRPLEAARREEQP------------HGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDV 217
            +R +E     E               G GA  S  ++++   +    +F D ++   D 
Sbjct: 202 QQRSMECEDSVEDAVTAYPLYATAGMTGAGAHGSNYDSLLHHQDSHEDNFLDGLLTAEDA 261

Query: 218 ATTSAQNNI 226
             ++   ++
Sbjct: 262 GLSAGPTSL 270

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 90/133 (67%), Gaps = 7/133 (5%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLC--GEKCQGD 61
           +PPG+RF PT+EELV +YL  K+  KR E+   I  I LY+IEPW L +LC  G + Q D
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEID-FIKDIDLYKIEPWDLQELCKIGHEEQSD 65

Query: 62  TEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
              W+FF+ + ++   G R +R T +G+WKATG    +Y   + +IG++KT+VFYKG+AP
Sbjct: 66  ---WYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLR-HSLIGMRKTLVFYKGRAP 121

Query: 122 TGRKTKWKMHEYR 134
            G+K+ W MHEYR
Sbjct: 122 NGQKSDWIMHEYR 134

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
224054472	246	NAC domain protein, IPR003441 [Populus t	0.890	0.991	0.659	2e-89
443682306	246	NAC protein 13 [Gossypium hirsutum]	0.879	0.979	0.588	2e-83
255565689	240	conserved hypothetical protein [Ricinus	0.872	0.995	0.636	5e-83
224104589	227	NAC domain protein, IPR003441 [Populus t	0.766	0.925	0.612	5e-78
356542033	244	PREDICTED: NAC domain-containing protein	0.879	0.987	0.574	1e-77
225460442	247	PREDICTED: NAC domain-containing protein	0.894	0.991	0.591	1e-77
356550097	253	PREDICTED: NAC domain-containing protein	0.923	1.0	0.565	2e-77
296089502	225	unnamed protein product [Vitis vinifera]	0.813	0.991	0.594	8e-77
4996349	229	NAC-domain protein [Nicotiana tabacum]	0.656	0.786	0.740	2e-75
296084884	232	unnamed protein product [Vitis vinifera]	0.660	0.780	0.777	6e-74

>gi|224054472|ref|XP_002298277.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|224149083|ref|XP_002336754.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222836661|gb|EEE75054.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845535|gb|EEE83082.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/276 (65%), Positives = 194/276 (70%), Gaps = 32/276 (11%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQE-LHRVIPVIRLYEIEPWHLPKLCGEKCQ 59
           MEELP GYRF+PTEEEL+SFYL NKL G RQE L RVIP I +Y+IEPW LPKL GE CQ
Sbjct: 1   MEELPLGYRFYPTEEELISFYLHNKLGGGRQERLQRVIPDISIYDIEPWDLPKLSGELCQ 60

Query: 60  GDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 119
           GDTEQWFFFTPRQERE RGGRP+RTTASGYWKATGSP YVYSSDNRVIG+KKTMVFY GK
Sbjct: 61  GDTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPGYVYSSDNRVIGLKKTMVFYTGK 120

Query: 120 APTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARR 179
           AP GRKTKWKM+EYRAIE     SS   PKLRHEFSLCR+YV S SFRAFDRRPLEA  R
Sbjct: 121 APRGRKTKWKMNEYRAIE-VHESSSNATPKLRHEFSLCRVYVVSGSFRAFDRRPLEAVTR 179

Query: 180 EEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYS 239
           E Q  G GATTSA                     D  V  T           SSPETSYS
Sbjct: 180 ETQLLGDGATTSAQGP------------------DPTVDMT-----------SSPETSYS 210

Query: 240 GEDHSDYPETNLDNNWNIVADPQPPLWDWE-QLNWP 274
            EDH D+P T    NW  V   +PP W+W  QL+WP
Sbjct: 211 VEDHVDHPGTAASANWGSVDGLEPPAWEWPGQLDWP 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443682306|gb|AGC97443.1| NAC protein 13 [Gossypium hirsutum]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/272 (58%), Positives = 192/272 (70%), Gaps = 31/272 (11%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
           E+P G+RFFPTEEELVSFYL N+L+G+RQE+H VIPV+ +Y++EPW LP+L GE+C+ DT
Sbjct: 2   EIPAGFRFFPTEEELVSFYLRNQLDGRRQEMHSVIPVLNIYDVEPWDLPQLAGERCRRDT 61

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
           EQWF+FTPRQERE RGGR +RTTASGYWKATGSPSYVYSSD+RVIG+KKTMVFYKGKAP+
Sbjct: 62  EQWFYFTPRQEREARGGRANRTTASGYWKATGSPSYVYSSDDRVIGMKKTMVFYKGKAPS 121

Query: 123 GRKTKWKMHEYRAIEGASNPSSAV-IPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
           G+KTKWKM+EYRAIE   NP++    P LRHEFSLCRIYV S SFRAFDRRPLE   R  
Sbjct: 122 GKKTKWKMNEYRAIEAVPNPTAVTRTPMLRHEFSLCRIYVVSGSFRAFDRRPLETVSRAT 181

Query: 182 QPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSGE 241
           Q H                             +   AT S + ++M   +SS  +   G 
Sbjct: 182 QLH-----------------------------ENRTATFSERASMMEVTSSSSTSHSGG- 211

Query: 242 DHSDYPETNLDNNWNIVADPQPPLWDWEQLNW 273
           DHSD PE N D+ W +V D + P   WEQ+NW
Sbjct: 212 DHSDQPEANEDDIWEMVNDLKEPPLGWEQMNW 243

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565689|ref|XP_002523834.1| conserved hypothetical protein [Ricinus communis] gi|223536922|gb|EEF38560.1| conserved hypothetical protein [Ricinus communis]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 175/275 (63%), Positives = 193/275 (70%), Gaps = 36/275 (13%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQE-LHRVIPVIRLYEIEPWHLPKLCGEKCQ 59
           MEELPPG+RF+PTEEELVSFYL+NKLEGKRQE L++VIP I +   EPW LPKL GE CQ
Sbjct: 1   MEELPPGFRFYPTEEELVSFYLLNKLEGKRQERLNQVIPAIDICSTEPWELPKLAGELCQ 60

Query: 60  GDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 119
           GDTEQWFFFTPRQERE RGGRPSRTTASGYWKATGSP YVYSSDNRVIGVKKTMVFYKGK
Sbjct: 61  GDTEQWFFFTPRQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGK 120

Query: 120 APTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARR 179
           APTGRKTKWKM+EYRAIEGA + S+  +PKLR       +YV S SFRAFDRRPLE+  R
Sbjct: 121 APTGRKTKWKMNEYRAIEGAPDSSTTHVPKLRXX-----VYVISGSFRAFDRRPLESTAR 175

Query: 180 EEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYS 239
           E Q  G                             GD+AT SAQ+  +    SS ETS S
Sbjct: 176 ETQFLG-----------------------------GDIATASAQHPRIVDNTSSSETSNS 206

Query: 240 GEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP 274
           G DH+D P      NW  V D    LW+WEQL+WP
Sbjct: 207 GGDHADVPRMAESANWE-VDDLANSLWEWEQLSWP 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104589|ref|XP_002313490.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222849898|gb|EEE87445.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  296 bits (759), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 172/258 (66%), Gaps = 48/258 (18%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
           MEELP GYRF+PTEEELVSFYL NKLEG RQEL RVIP I +Y+IEP  LP+L GE C+G
Sbjct: 1   MEELPLGYRFYPTEEELVSFYLHNKLEGTRQELQRVIPEISIYDIEPGDLPQLSGELCRG 60

Query: 61  DTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
           +TEQWFFFTPRQ RE RGGRP+RTTA+GYWKATGSP YVYSSDNRVIG+KKTMVFY GKA
Sbjct: 61  NTEQWFFFTPRQAREARGGRPNRTTATGYWKATGSPGYVYSSDNRVIGLKKTMVFYIGKA 120

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARRE 180
           PTGRKTKWKM+EYRAIE     S     KLRHEFSLCR+YV S SFRAFDRRPLEA    
Sbjct: 121 PTGRKTKWKMNEYRAIE-VHESSRNATSKLRHEFSLCRVYVVSGSFRAFDRRPLEA---- 175

Query: 181 EQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSG 240
                                       D I  +                 SSPETSYSG
Sbjct: 176 ----------------------------DPITVE---------------MTSSPETSYSG 192

Query: 241 EDHSDYPETNLDNNWNIV 258
            DH DYP T    NW ++
Sbjct: 193 GDHVDYPGTAASANWGLI 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542033|ref|XP_003539476.1| PREDICTED: NAC domain-containing protein 90-like [Glycine max]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/277 (57%), Positives = 192/277 (69%), Gaps = 36/277 (12%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
           M++LPPG+RF+PTEEELV FYL N+LEG+  +  RVIPVI +  +EPW+LP L GE C+G
Sbjct: 1   MDDLPPGFRFYPTEEELVFFYLHNQLEGQIHDTSRVIPVIDINGVEPWNLPSLAGELCRG 60

Query: 61  DTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
           DTEQWFFF+PRQERE RGGRP+RTTASGYWKATGSP +VYSSDN+VIG+KKTMVFYKGKA
Sbjct: 61  DTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKA 120

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARRE 180
           PTGRKTKWKMHEY+AIE  S+ S+   PKLRHEFSLCR+YV S SFR+FDRRPL+  R E
Sbjct: 121 PTGRKTKWKMHEYKAIE-HSDQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLDMPRVE 179

Query: 181 EQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGD--VATTSAQNNIMGPRASSPETSY 238
            +                             + DGD   A+TSAQ      R+SS  +  
Sbjct: 180 LR-----------------------------VVDGDRGAASTSAQAQ---QRSSSHTSHS 207

Query: 239 SGEDH-SDYPETNLDNNWNIVADPQPPLWDWEQLNWP 274
            G+ H +D    +   NWN     + PLW+WEQL+WP
Sbjct: 208 GGDAHVTDAGAGSSGTNWNASNRVEEPLWEWEQLDWP 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460442|ref|XP_002266232.1| PREDICTED: NAC domain-containing protein 90-like [Vitis vinifera]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/274 (59%), Positives = 185/274 (67%), Gaps = 29/274 (10%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKR-QELHRVIPVIRLYEIEPWHLPKLCGEKCQ 59
           ME+LPPG+RF+PTEEELVSFYL  KL+GKR QEL+RVIP + +YE+EPWHLP+L GE C+
Sbjct: 1   MEDLPPGFRFYPTEEELVSFYLRMKLQGKRLQELNRVIPDVNIYELEPWHLPRLSGEVCR 60

Query: 60  GDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 119
            DTEQWFFF PRQ RE +GGRPSRTT SGYWKATGSPSYVYSSDNRVIGVKKTMVFY GK
Sbjct: 61  RDTEQWFFFIPRQAREVQGGRPSRTTGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYNGK 120

Query: 120 APTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARR 179
           AP GRKTKWKM EYRAIE  +       PKLRHEFSL R+YV S SFRAFDRRPL    R
Sbjct: 121 APAGRKTKWKMQEYRAIEADAT------PKLRHEFSLSRVYVISGSFRAFDRRPLGTVTR 174

Query: 180 EEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYS 239
           EE             +  VR   +  +   A     D    +    +M  R+SSPE SYS
Sbjct: 175 EE------------TSQQVRRQHAAAAAAAAAAVSSDHVQDT---QMMEKRSSSPECSYS 219

Query: 240 GEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNW 273
           G     Y   +L  +   + D    LWDW QL+W
Sbjct: 220 G----GYDHVHLQASSAPIDD---FLWDWGQLDW 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550097|ref|XP_003543426.1| PREDICTED: NAC domain-containing protein 90-like [Glycine max]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/274 (56%), Positives = 194/274 (70%), Gaps = 21/274 (7%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
           ME LPPG+RF+PTEEELV FYL N+LEG+  +  RVIPV  +  +EPW+LP L GE C+G
Sbjct: 1   MEFLPPGFRFYPTEEELVVFYLHNQLEGQIHDTSRVIPVTDINGVEPWNLPTLAGEFCRG 60

Query: 61  DTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
           DTEQWFFF+PRQERE RGGRP+RTTASGYWKATGSP +VYSSDN+VIG+KKTMVFYKGKA
Sbjct: 61  DTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKA 120

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARRE 180
           PTGRKTKWKMH+Y+AIE  S+ S+   PKLRHEFSLCR+YV S SFR+FDRRPLE  R E
Sbjct: 121 PTGRKTKWKMHQYKAIE-HSHQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLEMPRIE 179

Query: 181 EQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSG 240
            +  G             RG  S ++ Q A + DG  ++ ++ ++  G   S    + +G
Sbjct: 180 LRVDGD------------RGAASTSTQQRAAVVDGLSSSDTSSHSGGGRGGSHISEAGAG 227

Query: 241 EDHSDYPETNLDNNWNIVADPQPPLWDWEQLNWP 274
              +++  +N        +  + PLW+WEQLNWP
Sbjct: 228 SSGTNWNASN--------SRVEEPLWEWEQLNWP 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089502|emb|CBI39321.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 163/274 (59%), Positives = 181/274 (66%), Gaps = 51/274 (18%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKR-QELHRVIPVIRLYEIEPWHLPKLCGEKCQ 59
           ME+LPPG+RF+PTEEELVSFYL  KL+GKR QEL+RVIP + +YE+EPWHLP+L GE C+
Sbjct: 1   MEDLPPGFRFYPTEEELVSFYLRMKLQGKRLQELNRVIPDVNIYELEPWHLPRLSGEVCR 60

Query: 60  GDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 119
            DTEQWFFF PRQ RE +GGRPSRTT SGYWKATGSPSYVYSSDNRVIGVKKTMVFY GK
Sbjct: 61  RDTEQWFFFIPRQAREVQGGRPSRTTGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYNGK 120

Query: 120 APTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARR 179
           AP GRKTKWKM EYRAIE  +       PKLRHEFSL R+YV S SFRAFDRRPL    R
Sbjct: 121 APAGRKTKWKMQEYRAIEADAT------PKLRHEFSLSRVYVISGSFRAFDRRPLGTVTR 174

Query: 180 EEQPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYS 239
           EE                       TS QD  M              M  R+SSPE SYS
Sbjct: 175 EE-----------------------TSQQDTQM--------------MEKRSSSPECSYS 197

Query: 240 GEDHSDYPETNLDNNWNIVADPQPPLWDWEQLNW 273
           G     Y   +L  +   + D    LWDW QL+W
Sbjct: 198 G----GYDHVHLQASSAPIDD---FLWDWGQLDW 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4996349|dbj|BAA78417.1| NAC-domain protein [Nicotiana tabacum]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 155/181 (85%), Gaps = 1/181 (0%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
           M E+ PG+RF+PTEEEL+SFYL+NKLEGKR EL RVIPV+ +Y ++PWHLP L GE C G
Sbjct: 1   MVEISPGFRFYPTEEELISFYLLNKLEGKRPELDRVIPVVTIYNLDPWHLPNLPGELCMG 60

Query: 61  DTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
           DTEQWFFF PRQERE RGGRP RTT SGYWKATGSP+YVYSS+++VIGVKK+MVFYKGKA
Sbjct: 61  DTEQWFFFVPRQEREARGGRPCRTTTSGYWKATGSPTYVYSSESKVIGVKKSMVFYKGKA 120

Query: 121 PTGRKTKWKMHEYRAIEGASNPSSAV-IPKLRHEFSLCRIYVKSESFRAFDRRPLEAARR 179
           PTGRKTKWKM+EYRAIE  ++ SS+  IPKLRHE SLCR+YV S SFRAFDRRP+    R
Sbjct: 121 PTGRKTKWKMNEYRAIEQETSTSSSFSIPKLRHEMSLCRVYVISGSFRAFDRRPVATVTR 180

Query: 180 E 180
           +
Sbjct: 181 D 181

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084884|emb|CBI28293.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 154/184 (83%), Gaps = 3/184 (1%)

Query: 1   MEELPPGYRFFPTEEELVSFYLINKLEGKR-QELHRVIPVIRLYEIEPWHLPKLCGEKCQ 59
           ME+LPPG+RF+PTEEELVSFYL  KL GKR QE+ RVIP I +YE+EP HLPK  GE C+
Sbjct: 1   MEDLPPGFRFYPTEEELVSFYLRMKLRGKRLQEISRVIPDIDIYELEPSHLPKHAGEVCK 60

Query: 60  GDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 119
            DTEQWFFFTPRQERE RGGRPSRTT SGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK
Sbjct: 61  ADTEQWFFFTPRQEREARGGRPSRTTESGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGK 120

Query: 120 APTGRKTKWKMHEYRAIE--GASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAA 177
           AP GRKTKWKMHEYRAIE    +  S+  IPKLRHEF+L R+YV S SFRAFDRRPL   
Sbjct: 121 APAGRKTKWKMHEYRAIETDTTTLNSTTAIPKLRHEFTLSRVYVVSGSFRAFDRRPLGTV 180

Query: 178 RREE 181
            REE
Sbjct: 181 VREE 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2176372	235	NAC090 "NAC domain containing	0.620	0.723	0.635	1.4e-66
TAIR|locus:2100212	241	NAC061 "NAC domain containing	0.791	0.900	0.549	3.2e-58
TAIR|locus:2827676	276	NAC036 "NAC domain containing	0.886	0.880	0.361	1.2e-33
TAIR|locus:2124014	314	RD26 "RESPONSIVE TO DESICCATIO	0.667	0.582	0.410	1.2e-33
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.616	0.355	0.406	1.1e-32
TAIR|locus:2056266	414	LOV1 "LONG VEGETATIVE PHASE 1"	0.755	0.5	0.364	1.8e-32
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.645	0.558	0.429	1.8e-32
TAIR|locus:2141075	262	NAC071 "NAC domain containing	0.565	0.591	0.441	1.8e-32
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.591	0.445	0.428	3.4e-32
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.649	0.561	0.423	4.7e-32

TAIR|locus:2176372 NAC090 "NAC domain containing protein 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 110/173 (63%), Positives = 135/173 (78%)

Query:     2 EELPPGYRFFPTEEELVSFYLINKLEGKRQE-LHRVIPVIRLYEIEPWHLPKLCGEKCQG 60
             +E+  G+RF+PTEEELVSFYL N+LEG+  + +HRVIPV+ ++E+EP HLP + G +C+G
Sbjct:     3 DEVTIGFRFYPTEEELVSFYLRNQLEGRSDDSMHRVIPVLDVFEVEPSHLPNVAGVRCRG 62

Query:    61 DTEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKA 120
             D EQWFFF PRQ        PSRTT SGYWKATGSP  V+S DN++IG KKTMVFY GKA
Sbjct:    63 DAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKA 122

Query:   121 PTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRP 173
             PTGRKTKWKM+EY A++   N S+  IPKLR EFSLCR+Y+ + S RAFDRRP
Sbjct:   123 PTGRKTKWKMNEYHAVDETVNAST--IPKLRREFSLCRVYITTGSSRAFDRRP 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2100212 NAC061 "NAC domain containing protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 123/224 (54%), Positives = 147/224 (65%)

Query:     2 EELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGD 61
             EEL  G+RF+PTE EL+++YL  +L G    +H +IP++ ++ +EP  LP L GE+C+GD
Sbjct:     3 EELSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGD 62

Query:    62 TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
              EQW FF PRQ        PSRTT SGYWKATGSP  V+S DNRVIGVKKTMVFY GKAP
Sbjct:    63 AEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAP 122

Query:   122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
             TGRKTKWKM+EY+A+E AS    + IPKLR EFS+CRIY+KS S RAFDRRP EA   E 
Sbjct:   123 TGRKTKWKMNEYKAVETAS---VSTIPKLRPEFSICRIYIKSGSSRAFDRRPTEAYAIER 179

Query:   182 QPHGGGATTSAPNNIMVRGNGSNTSFQDAIMCDGDV-ATTSAQN 224
                  G  TS+   I        TS       D  V ATT  Q+
Sbjct:   180 NLPSNGVETSSRATI---STSPETSHSGGNQVDLPVNATTITQS 220

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2827676 NAC036 "NAC domain containing protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 99/274 (36%), Positives = 146/274 (53%)

Query:     6 PGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQW 65
             PG+RF PTEEEL+ FYL N + GKR  +  VI  + +Y  +PW LP   G    G+ E W
Sbjct:     8 PGFRFHPTEEELLDFYLKNMVYGKRSSVE-VIGFLNIYRHDPWDLP---GLSRIGERE-W 62

Query:    66 FFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYS-SD-NRVIGVKKTMVFYKGKAPTG 123
             +FF PR+        PSRTT  GYWKATGS   + S S+  RVIG+KKT+VFY+G+AP G
Sbjct:    63 YFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLSEPKRVIGLKKTLVFYRGRAPGG 122

Query:   124 RKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRP-LEAARREEQ 182
              KT W M+E+R       P +  +PK   +  LC+IY K+ S +  ++R  +EA   +  
Sbjct:   123 SKTDWVMNEFRM------PDNCSLPK---DVVLCKIYRKATSLKVLEQRAEMEAKMNQTC 173

Query:   183 PHGGGATTSAPNNIMVRGNGSN--TSFQDAIMCDGDVATTSAQNNIMGPRASSPETSYSG 240
             P+   +  S+   I   G   N  TSF+   +    +A   A N I   + ++       
Sbjct:   174 PN---SPLSSSETISFVGKEENMMTSFRAPQV----IAMEEA-NKIQMHQENAKTEEKQR 225

Query:   241 EDHSDYPETNLDNNWNIVAD---PQPPLWDWEQL 271
             E  +  P ++L   +  + +   P+P + +W+QL
Sbjct:   226 EAETKEPSSSLKLPFGSLPELQLPKPGV-EWDQL 258

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2124014 RD26 "RESPONSIVE TO DESICCATION 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 83/202 (41%), Positives = 118/202 (58%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLP--KLC----GE- 56
             LPPG+RF+PT+EEL+  YL  K+ G    L +VI  I LY+ +PW LP  + C    GE 
Sbjct:    14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKQTCFTFVGEY 72

Query:    57 KCQ--GDT----EQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVK 110
              C   G      ++W+FF+PR         P+R   SGYWKATG+   + ++D R +G+K
Sbjct:    73 NCNYLGKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-TADGRRVGIK 131

Query:   111 KTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFD 170
             K +VFY GKAP G KT W MHEYR IE + +  S+   KL  ++ LCRIY K+   +   
Sbjct:   132 KALVFYAGKAPKGTKTNWIMHEYRLIEHSRSHGSS---KL-DDWVLCRIYKKTSGSQRQA 187

Query:   171 RRPLEAARREEQPHGGGATTSA 192
               P++A R E   +G  +++S+
Sbjct:   188 VTPVQACREEHSTNGSSSSSSS 209

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 74/182 (40%), Positives = 107/182 (58%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
             LPPG+RF PT+EEL+++YL  K+ G+  EL  +IP + LY+ EPW LP   G+      +
Sbjct:     6 LPPGFRFHPTDEELITYYLKRKINGQEIELE-IIPEVDLYKCEPWDLP---GKSLIPSKD 61

Query:    64 Q-WFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
             Q WFFF+PR          +R T  GYWKATG    V   D R IG KKT+V+Y+G+AP 
Sbjct:    62 QEWFFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRD-RAIGTKKTLVYYRGRAPH 120

Query:   123 GRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREEQ 182
             G +T W MHEYR  E    PS+     ++  ++LCR++ K       + +P +  +++ Q
Sbjct:   121 GIRTGWVMHEYRLDESECEPSAF---GMQDAYALCRVFKKI----VIEAKPRDQHQQQHQ 173

Query:   183 PH 184
             P+
Sbjct:   174 PY 175

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2056266 LOV1 "LONG VEGETATIVE PHASE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 86/236 (36%), Positives = 119/236 (50%)

Query:     6 PGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLC--GEKCQGDTE 63
             PG+RF PTEEEL+ FYL  K+EGKR  +  +I  + LY  +PW LP +   GEK      
Sbjct:    53 PGFRFHPTEEELIEFYLRRKVEGKRFNVE-LITFLDLYRYDPWELPAMAAIGEK------ 105

Query:    64 QWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTG 123
             +W+F+ PR         P+R T SGYWKATG+   + S  +R IG+KKT+VFY GKAP G
Sbjct:   106 EWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIGLKKTLVFYSGKAPKG 165

Query:   124 RKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVK-----------SESFRAFDRR 172
              +T W M+EYR       P        + E SLCR+Y +           S S R  +  
Sbjct:   166 TRTSWIMNEYRL------PHHETEKYQKAEISLCRVYKRPGVEDHPSVPRSLSTRHHNHN 219

Query:   173 PLEAARR--EEQPHGGGATTSAPNNIMVRGNGSNTS-FQDAIMCDGDVATTSAQNN 225
                ++R    +Q H   ++  + NN+    N +N          DG   TT+  +N
Sbjct:   220 SSTSSRLALRQQQHHSSSSNHSDNNLNNNNNINNLEKLSTEYSGDGSTTTTTTNSN 275

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 82/191 (42%), Positives = 109/191 (57%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
             LPPG+RF+PT+EEL+  YL  K  G    L ++I  I LY+ +PW LP   L GEK    
Sbjct:    14 LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-QLIAEIDLYKFDPWVLPSKALFGEK---- 68

Query:    62 TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
               +W+FF+PR         P+R   SGYWKATG+   V S++ R +G+KK +VFY GKAP
Sbjct:    69 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-VISTEGRRVGIKKALVFYIGKAP 125

Query:   122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFRAFDRRPLEAARREE 181
              G KT W MHEYR IE +    S    KL  ++ LCRIY K  S +      L  + RE 
Sbjct:   126 KGTKTNWIMHEYRLIEPSRRNGST---KL-DDWVLCRIYKKQTSAQKQAYNNLMTSGREY 181

Query:   182 QPHGGGATTSA 192
               +G   ++S+
Sbjct:   182 SNNGSSTSSSS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2141075 NAC071 "NAC domain containing protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 72/163 (44%), Positives = 98/163 (60%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
             LPPG+RF PT+EEL+ +YL  K+EG   EL  VIPVI LY+ +PW LP   G+    + +
Sbjct:     6 LPPGFRFHPTDEELIGYYLSRKIEGLEIELE-VIPVIDLYKFDPWELP---GKSFLPNRD 61

Query:    64 -QWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVI-GVKKTMVFYKGKAP 121
              +WFFF PR          +R T +GYWKATG    +    + VI G +KT+VFY+G+AP
Sbjct:    62 LEWFFFCPRDKKYANGSRTNRATKAGYWKATGKDRKITCKSSHVIAGYRKTLVFYEGRAP 121

Query:   122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSE 164
              G +T W MHEYR  +   +  S   P  +  F+LCR+  K+E
Sbjct:   122 LGDRTNWFMHEYRLCD--IDDHSQKSPNFKGAFALCRVVKKNE 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 75/175 (42%), Positives = 97/175 (55%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
             LPPG+RF PT+EELV  YL  K       +  +I  + LY+ +PW LP     K     +
Sbjct:    17 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPA----KASFGEQ 71

Query:    64 QWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSD-NRVIGVKKTMVFYKGKAPT 122
             +W+FF+PR         P+R   SGYWKATG+   V +SD N+ +GVKK +VFY GK P 
Sbjct:    72 EWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPK 131

Query:   123 GRKTKWKMHEYRAIEGASN---PSSAVIPK---LR-HEFSLCRIYVKSESFRAFD 170
             G K+ W MHEYR IE   N   P      K   LR  ++ LCRIY K+ + R  D
Sbjct:   132 GVKSDWIMHEYRLIENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNNASRHVD 186

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 83/196 (42%), Positives = 113/196 (57%)

Query:     4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
             LPPG+RF+PT+EEL+  YL  K  G    L ++I  I LY+ +PW LP   L GEK    
Sbjct:    14 LPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKALFGEK---- 68

Query:    62 TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
               +W+FF+PR         P+R   SGYWKATG+   + S++ + +G+KK +VFY GKAP
Sbjct:    69 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 125

Query:   122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFR--AFDRRPLEAARR 179
              G KT W MHEYR IE +    S    KL  ++ LCRIY K  S +   +D     A  R
Sbjct:   126 KGTKTNWIMHEYRLIEPSRRNGST---KL-DDWVLCRIYKKQSSAQKQVYDNGIANA--R 179

Query:   180 EEQPHGGGATTSAPNN 195
             E   +G  +TTS+ ++
Sbjct:   180 EFSNNGTSSTTSSSSH 195

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMR3	NAC90_ARATH	No assigned EC number	0.5182	0.8467	0.9872	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC106 NAC domain protein, IPR003441 (246 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	4e-69

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  209 bits (534), Expect = 4e-69
 Identities = 69/133 (51%), Positives = 86/133 (64%), Gaps = 3/133 (2%)

Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
           LPPG+RF PT+EELV +YL  K+ GK   L  VIP + +Y+ EPW LP     K +G   
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLP---DGKAKGGDR 57

Query: 64  QWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTG 123
           +W+FF+PR  +   G R +R T SGYWKATG    V S    V+G+KKT+VFYKG+AP G
Sbjct: 58  EWYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKG 117

Query: 124 RKTKWKMHEYRAI 136
            KT W MHEYR  
Sbjct: 118 EKTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.7e-44  Score=294.38  Aligned_cols=129  Identities=47%  Similarity=0.976  Sum_probs=96.2

Q ss_pred             CCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCCcc
Q 023996            4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPSR   83 (274)
Q Consensus         4 LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~~R   83 (274)
                      |||||||+|||+|||.+||++|+.|.+++...+|+++|||++|||+|+...    .+.+++||||+++++++.+|.|++|
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~----~~~~~~~yFF~~~~~~~~~~~r~~R   76 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF----KGGDEEWYFFSPRKKKYPNGGRPNR   76 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS----SS-SSEEEEEEE----------S-E
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc----cCCCceEEEEEecccccCCcccccc
Confidence            899999999999999999999999999877789999999999999999521    1244479999999999999999999


Q ss_pred             ccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeC
Q 023996           84 TTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAI  136 (274)
Q Consensus        84 ~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~  136 (274)
                      ++++|+||++|+.+.|.+.++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        77 ~~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   77 VTGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999999977999999999999998888899999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-30
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-30
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-28

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
           LPPG+RF+PT+EEL+  YL  K  G    L  +I  I LY+ +PW LP   L GEK    
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEK---- 71
Query: 62  TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
             +W+FF+PR         P+R   SGYWKATG+   + S++ + +G+KK +VFY GKAP
Sbjct: 72  --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 128
Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 165
            G KT W MHEYR IE +    S  +     ++ LCRIY K  S
Sbjct: 129 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 168

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
           LPPG+RF+PT+EEL+  YL  K  G    L  +I  I LY+ +PW LP   L GEK    
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEK---- 74
Query: 62  TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
             +W+FF+PR         P+R   SGYWKATG+   + S++ + +G+KK +VFY GKAP
Sbjct: 75  --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 131
Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 165
            G KT W MHEYR IE +    S  +     ++ LCRIY K  S
Sbjct: 132 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 171

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 7/164 (4%)
Query: 4   LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
           LPPG+RF PT++ELV  YL  K  G+R  +  +I  + LY+ +PW LP    E+      
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-IIAEVDLYKFDPWDLP----ERALFGAR 69
Query: 64  QWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTG 123
           +W+FFTPR         P+R   +GYWKATG+   V +   R +G+KK +VFY GKAP G
Sbjct: 70  EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRG 128
Query: 124 RKTKWKMHEYRAIEGASNPSSAVIPKLR-HEFSLCRIYVKSESF 166
            KT W MHEYR  +     + A    LR  ++ LCR+Y K   +
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEW 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-72
1ut7_A	171	No apical meristem protein; transcription regulati	3e-71

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  219 bits (559), Expect = 1e-72
 Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
            LPPG+RF PT++ELV  YL  K  G+R  +  +I  + LY+ +PW LP    E+     
Sbjct: 14  NLPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLP----ERALFGA 68

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
            +W+FFTPR  +   G RP+R   +GYWKATG+   V     R +G+KK +VFY GKAP 
Sbjct: 69  REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPR 127

Query: 123 GRKTKWKMHEYRAIEGASNPSSAVIPKLR-HEFSLCRIYVKSESFR 167
           G KT W MHEYR  +     + A    LR  ++ LCR+Y K   + 
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  215 bits (550), Expect = 3e-71
 Identities = 71/165 (43%), Positives = 95/165 (57%), Gaps = 10/165 (6%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
            LPPG+RF+PT+EEL+  YL  K  G    L ++I  I LY+ +PW LP        G+ 
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKA---LFGEK 71

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
           E W+FF+PR  +   G RP+R   SGYWKATG+   + +   + +G+KK +VFY GKAP 
Sbjct: 72  E-WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPK 129

Query: 123 GRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSESFR 167
           G KT W MHEYR IE +             ++ LCRIY K  S +
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNG----STKLDDWVLCRIYKKQSSAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=2.7e-55  Score=376.87  Aligned_cols=157  Identities=43%  Similarity=0.891  Sum_probs=129.8

Q ss_pred             CCCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCCc
Q 023996            3 ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPS   82 (274)
Q Consensus         3 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~~   82 (274)
                      .|||||||+|||||||.+||++|+.|.+++. .+|+++|||.+|||+||+.+   ..|+ .+||||+++++++++|.|++
T Consensus        14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~-~~I~evDvy~~~Pw~Lp~~~---~~g~-~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A           14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERA---LFGA-REWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS-SCCEECCGGGSCGGGSGGGC---SSCS-SEEEEEEECCC-----CCSC
T ss_pred             CCCCcceeCCCHHHHHHHHHHHHhcCCCCCc-CeeeecccccCCchhhhhhh---ccCC-ceEEEEeccccccCCCCCce
Confidence            6999999999999999999999999998865 69999999999999999854   3454 46999999999999999999


Q ss_pred             cccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeCCCCCCCC-CCCCCCCCCceEEEEEEE
Q 023996           83 RTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPS-SAVIPKLRHEFSLCRIYV  161 (274)
Q Consensus        83 R~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~-~~~~~~~~~e~VLCRIy~  161 (274)
                      |+|++||||++|+++.|.+. |.+||+||+|+||.++++++.||+|+||||+|........ +.......++|||||||+
T Consensus        89 R~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             eecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            99999999999999999876 8999999999999999999999999999999988653211 111112357999999999


Q ss_pred             eCCC
Q 023996          162 KSES  165 (274)
Q Consensus       162 k~~~  165 (274)
                      |++.
T Consensus       168 K~~~  171 (174)
T 3ulx_A          168 KKNE  171 (174)
T ss_dssp             SCC-
T ss_pred             cCCC
Confidence            8754

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=7.5e-55  Score=373.53  Aligned_cols=155  Identities=45%  Similarity=0.897  Sum_probs=126.5

Q ss_pred             CCCCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCC
Q 023996            2 EELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRP   81 (274)
Q Consensus         2 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~   81 (274)
                      ..|||||||+|||||||.+||++|+.|.+++. .+|+++|||.+|||+||+.+   ..|+ .+||||+++++++++|.|+
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~-~~I~e~Diy~~~Pw~Lp~~~---~~g~-~ewyFFs~r~~k~~~g~R~   89 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKA---LFGE-KEWYFFSPRDRKYPNGSRP   89 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS-CCSEECCGGGSCGGGHHHHS---SSCS-SEEEEEEECCC-------C
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCC-CeEeecccccCChhHhhchh---hcCC-ccEEEEeccccccCCCCcc
Confidence            46999999999999999999999999999864 69999999999999999964   3454 4699999999999999999


Q ss_pred             ccccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeCCCCCCCCCCCCCCCCCceEEEEEEE
Q 023996           82 SRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYV  161 (274)
Q Consensus        82 ~R~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~e~VLCRIy~  161 (274)
                      +|+|++||||++|+++.|++. +.+||+||+|+||.++++++.||+|+||||+|.....    .......++|||||||+
T Consensus        90 ~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~----~~~~~~~~~~VlCrv~~  164 (171)
T 1ut7_A           90 NRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR----RNGSTKLDDWVLCRIYK  164 (171)
T ss_dssp             CEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEE
T ss_pred             cccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc----ccCcccCCCEEEEEEEE
Confidence            999999999999999999986 7999999999999999999999999999999987531    11223468999999999


Q ss_pred             eCCCC
Q 023996          162 KSESF  166 (274)
Q Consensus       162 k~~~~  166 (274)
                      |+.+.
T Consensus       165 k~~~~  169 (171)
T 1ut7_A          165 KQSSA  169 (171)
T ss_dssp             CC---
T ss_pred             cCCCC
Confidence            98654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-50

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  161 bits (409), Expect = 2e-50
 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 10/160 (6%)

Query: 3   ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDT 62
            LPPG+RF+PT+EEL+  YL  K  G      ++I  I LY+ +PW LP     K     
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFS-LQLIAEIDLYKFDPWVLP----NKALFGE 70

Query: 63  EQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPT 122
           ++W+FF+PR  +   G RP+R   SGYWKATG+   + S++ + +G+KK +VFY GKAP 
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD-KIISTEGQRVGIKKALVFYIGKAPK 129

Query: 123 GRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVK 162
           G KT W MHEYR IE +    S        ++ LCRIY K
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNGS----TKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-52  Score=353.31  Aligned_cols=151  Identities=46%  Similarity=0.929  Sum_probs=123.8

Q ss_pred             CCCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCCc
Q 023996            3 ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPS   82 (274)
Q Consensus         3 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~~   82 (274)
                      +|||||||+|||||||.+||++|+.|.+++. .+|+++|||.+|||+||+.+   ..++ ++||||+++.+++++|.|++
T Consensus        16 ~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~-~~I~~~Dvy~~~Pw~Lp~~~---~~~~-~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKA---LFGE-KEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTCCCSS-CCSEECCGGGSCGGGHHHHS---SSCS-SEEEEEEECCC-------CC
T ss_pred             cCCCccccCCCcHHHHHHHHHHHHcCCCCCc-ccceeccCCcCChhhccchh---ccCc-ceEEEEeeeccccCCCCccc
Confidence            6999999999999999999999999999865 59999999999999999853   3344 46999999999999999999


Q ss_pred             cccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeCCCCCCCCCCCCCCCCCceEEEEEEEe
Q 023996           83 RTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVK  162 (274)
Q Consensus        83 R~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~e~VLCRIy~k  162 (274)
                      |++++|+||++|+++.|.+. |.+||+||+|+||+++++++.+|+|+||||+|.+....    ......++|||||||+|
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~-g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~----~~~~~~~~~VLCrI~~K  165 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR----NGSTKLDDWVLCRIYKK  165 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEEC
T ss_pred             cccCCCEecccCCCceEecC-CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc----cCccccCCEEEEEEEec
Confidence            99999999999999988764 89999999999999999999999999999999874321    12234578999999997


Q ss_pred             C
Q 023996          163 S  163 (274)
Q Consensus       163 ~  163 (274)
                      +
T Consensus       166 k  166 (166)
T d1ut7a_         166 Q  166 (166)
T ss_dssp             C
T ss_pred             C
Confidence            4