Citrus Sinensis ID: 023997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHcccHHHHHcccccccccccccccccccccccEEcccccccccccccccccEEEEccEccccccccccccccEEcEEEEccccccccEEEEEEEEcccccccEEcccccccccccHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccHHccccccccccccccccc
Coil and Loop (DISEMBL)
malssisplsikslnfcsssskgpyqlhalskpLWVACQissktesdgqfpgpyaklknWRVFVSTALAAAVVASCSSNISALADLNKYeaetrgefgigsaaqfgsADLRKAVHVKEnfrranftsadmresdfsgskfngAYLEKAVAYKAnftgadlsdTLMDRMVLNEANLTNAVLVRTVLtrsdlggaiiegadfSDAVIDLAQKQALCKyangtnpitgvstrkslgcgnsrrnaygspsspllsappqklldrdgfcdsgtglcdak
Flexible Loop (DISEMBL)
malssisplsiKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENfrranftsadmresdfsgSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYangtnpitgvstrKSLGCGNSRRnaygspsspllsappqklLDRDGFCDSGTGLCDAK
Low Complexity Region (SEG)
MAlssisplsikslNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNWRvfvstalaaavvascssnisaLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGspsspllsappqkllDRDGFCDSGTGLCDAK
Disordered region (IsUnstruct)
************************YQLHALSKPLWVACQISS*****GQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR****************KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGV************************************************
Disordered Region (DISOPRED)
****S*SPLSIKSLNF*******************************G**PGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAY*S***********KLLDRDGFCDSGTGLC***
Disordered Region (DISEMBL)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Disordered Region (DISPRO)
***********************PYQLHALSKPLWVACQISSK********GPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNP*TG*STRKSL*CGNSRR***GSPSSPLLSAPPQKLLDRDGFCDSGTG*C***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q8H1Q1	280	Thylakoid lumenal protein	no	no	0.996	0.975	0.715	1e-100
O22160	224	Thylakoid lumenal 15 kDa	no	no	0.408	0.5	0.365	2e-09
Q52118	295	Uncharacterized protein i	N/A	no	0.364	0.338	0.342	9e-07
Q55837	166	Uncharacterized protein s	N/A	no	0.302	0.5	0.375	1e-06
P81760	236	Thylakoid lumenal 17.4 kD	no	no	0.412	0.478	0.279	4e-06
P73709	331	Uncharacterized protein s	N/A	no	0.364	0.302	0.323	0.0002
P74297	574	Serine/threonine-protein	N/A	no	0.423	0.202	0.315	0.0007
Q9SE95	298	FH protein interacting pr	no	no	0.346	0.318	0.33	0.0007

>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/281 (71%), Positives = 226/281 (80%), Gaps = 8/281 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKT-----ESDGQFPG--P 53
           MA SS+SPL +KSL+   SSS      +   + L    Q+SS++     +S     G   
Sbjct: 1   MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSRSNLEIKDSSNTREGCCS 60

Query: 54  YAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKA 113
            A+   W+  +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSADL K 
Sbjct: 61  SAESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSADLSKT 119

Query: 114 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 173
           VH  ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEA
Sbjct: 120 VHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEA 179

Query: 174 NLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLG 233
           NLTNAVLVR+VLTRSDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TRKSLG
Sbjct: 180 NLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLG 239

Query: 234 CGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           CGNSRRNAYGSPSSPLLSAPPQ+LL RDGFCD  TGLCD K
Sbjct: 240 CGNSRRNAYGSPSSPLLSAPPQRLLGRDGFCDEKTGLCDVK 280

Arabidopsis thaliana (taxid: 3702)

>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 118 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 172
           +   R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  +
Sbjct: 106 QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 160

Query: 173 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 231
            NLTNA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +
Sbjct: 161 VNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 220

Query: 232 LGC 234
           L C
Sbjct: 221 LLC 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANF 155
           S A   +ADL++A     N   A+ T+A++ ++D      +GA L  A   +AY  +A+ 
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229

Query: 156 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 200
           + A+LS+  + R  L++ANL++A L    L R+DL  AI++GA+ 
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274

Erwinia stewartii (taxid: 66271)

>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0516 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN---- 174
           + R  N  +A +  SD SG+  +G  L +A+  +AN TGA+LS+T +    L EAN    
Sbjct: 49  DLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGA 108

Query: 175 -LTNAVLVRTVLTRSDLGGAIIEGADFS 201
            L+ A L R+ L   DL GA ++GA+ +
Sbjct: 109 DLSGANLERSFLRDVDLTGANLKGANLA 136

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 117 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 176
           + N +    ++A M  + F G+      + KA A +A+F G + ++ ++DR+   ++NL 
Sbjct: 123 QTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLK 182

Query: 177 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 234
            AV   TVL+ S    A +E   F D +I     Q +C+     N       R  LGC
Sbjct: 183 GAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235

Arabidopsis thaliana (taxid: 3702)

>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1819 PE=4 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A+  + + + A+    N  R N T      S+ S ++ N A L +A   KAN   A+L
Sbjct: 229 SEAEMTAVNCQGAIMTHVNLNRTNLTG-----SNLSFTRMNSADLSRANLTKANLQEAEL 283

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 205
            +    R  L EAN  NA LVR  L  +++ GA  +GA   D  +
Sbjct: 284 IEAFFARANLTEANFINANLVRADLMSANMVGADFQGATMPDGQV 328

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spkB PE=1 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 36  VACQISSKTESDGQFPGPYAKLKNWRVF-----VSTALAAAVVASCSSNISALADLNKYE 90
           +A Q  +K  +   F   YA+ K  R F     V   LA A V   +   + L + N  +
Sbjct: 426 IANQPETKRWNGKTFLAEYAQGK--RDFADQNLVGIVLAKAFVPGINCYQANLTNANFEQ 483

Query: 91  AETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA 150
           AE        + A FG A L+  +    N   A F  AD+R +D  G+  NG   + A  
Sbjct: 484 AEL-------TRADFGKARLKNVIFKGANLSDAYFGYADLRGADLRGANLNGVNFKYANL 536

Query: 151 YKANFTGADL 160
             ANF+GADL
Sbjct: 537 QGANFSGADL 546

Protein kinase required for cell motility, but not for phototaxis.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%)

Query: 104 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 163
           +F SA+LR A+    N + AN   A +    F G+    A+L+ A    AN  GA+L   
Sbjct: 192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGA 251

Query: 164 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            +    L+ AN   A L R  L   +L  A +EGA+   A
Sbjct: 252 NLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGA 291

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255583634	280	conserved hypothetical protein [Ricinus	1.0	0.978	0.789	1e-119
297741150	261	unnamed protein product [Vitis vinifera]	0.952	1.0	0.788	1e-114
359474379	596	PREDICTED: uncharacterized protein LOC10	0.952	0.437	0.788	1e-114
224071571	275	predicted protein [Populus trichocarpa]	0.974	0.970	0.748	1e-113
449459702	279	PREDICTED: thylakoid lumenal protein At1	0.992	0.974	0.730	1e-109
388505216	273	unknown [Lotus japonicus]	0.959	0.963	0.738	1e-108
356540500	260	PREDICTED: thylakoid lumenal protein At1	0.948	1.0	0.755	1e-107
357481963	262	Thylakoid lumenal protein [Medicago trun	0.956	1.0	0.729	1e-104
357481965	232	Thylakoid lumenal protein [Medicago trun	0.788	0.931	0.847	1e-103
116785652	291	unknown [Picea sitchensis]	0.839	0.790	0.785	1e-102

>gi|255583634|ref|XP_002532572.1| conserved hypothetical protein [Ricinus communis] gi|223527699|gb|EEF29806.1| conserved hypothetical protein [Ricinus communis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/280 (78%), Positives = 238/280 (85%), Gaps = 6/280 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTE------SDGQFPGPY 54
           MA +SISPLSIKS+N   SSS+ PY L + SKP  + CQ++++ E      S  ++   +
Sbjct: 1   MAFTSISPLSIKSVNISPSSSRSPYHLPSQSKPFHILCQLATEREDRILDCSTTRYKVHH 60

Query: 55  AKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAV 114
           +K KNWR  VSTALAAA   +    + A ADLNK+EAE RGEFGIGSAAQFGSADLRKAV
Sbjct: 61  SKPKNWRTLVSTALAAAAAVNLGFGLPAAADLNKFEAELRGEFGIGSAAQFGSADLRKAV 120

Query: 115 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 174
           HV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN
Sbjct: 121 HVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 180

Query: 175 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 234
           LTNAVLVR+VLTRSDLGGAIIEGADFSDAVIDL QKQALCKYANGTN ITGVSTRKSLGC
Sbjct: 181 LTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDLTQKQALCKYANGTNSITGVSTRKSLGC 240

Query: 235 GNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           GNSRRNAYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 241 GNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDEATGLCDAK 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741150|emb|CBI31881.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/274 (78%), Positives = 229/274 (83%), Gaps = 13/274 (4%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNW 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +    A+ K W
Sbjct: 1   MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNYCRANAESKKW 48

Query: 61  RVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENF 120
           +  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHV ENF
Sbjct: 49  QRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVNENF 107

Query: 121 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180
           RRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL
Sbjct: 108 RRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 167

Query: 181 VRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRN 240
            RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SLGCGNSRR+
Sbjct: 168 ARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASLGCGNSRRS 227

Query: 241 AYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 228 AYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474379|ref|XP_002265958.2| PREDICTED: uncharacterized protein LOC100250522 isoform 2 [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/274 (78%), Positives = 229/274 (83%), Gaps = 13/274 (4%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNW 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +    A+ K W
Sbjct: 336 MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNYCRANAESKKW 383

Query: 61  RVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENF 120
           +  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHV ENF
Sbjct: 384 QRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVNENF 442

Query: 121 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180
           RRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL
Sbjct: 443 RRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 502

Query: 181 VRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRN 240
            RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SLGCGNSRR+
Sbjct: 503 ARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASLGCGNSRRS 562

Query: 241 AYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 563 AYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071571|ref|XP_002303521.1| predicted protein [Populus trichocarpa] gi|222840953|gb|EEE78500.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/282 (74%), Positives = 233/282 (82%), Gaps = 15/282 (5%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPG-------- 52
           MA +SIS +SIKS N  +     P+++ +LSKP  +A Q+   TE   QF          
Sbjct: 1   MAFTSISSMSIKSPNIST-----PHRILSLSKPFRIAYQL--DTERGNQFADCSKNGYEV 53

Query: 53  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 112
             AK KNW   VST L AA ++  S N+ A+ADLN++EAETRGEFGIGSAAQFGSADLRK
Sbjct: 54  ETAKAKNWARVVSTTLVAAAISFSSCNLPAVADLNRFEAETRGEFGIGSAAQFGSADLRK 113

Query: 113 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 172
           AVH+ ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 114 AVHLNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 173

Query: 173 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 232
           +NLTNAVLVR+VLTRSDLGGA+I GADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 174 SNLTNAVLVRSVLTRSDLGGALIAGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 233

Query: 233 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           GCGNSRRNAYG+PSSPLLSAPPQKLLDRDGFCD GTGLCDAK
Sbjct: 234 GCGNSRRNAYGTPSSPLLSAPPQKLLDRDGFCDQGTGLCDAK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459702|ref|XP_004147585.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus] gi|449520611|ref|XP_004167327.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/278 (73%), Positives = 228/278 (82%), Gaps = 6/278 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTE-----SDGQFPGPYA 55
           MALSSIS LS+K L   SS S+ P  L    K + +  QI+ + +     S+ +  G   
Sbjct: 1   MALSSISSLSVKCLPLNSSKSRHPCSLQT-RKQISMVSQINPQKDQTQDCSERKHIGKIT 59

Query: 56  KLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVH 115
           + K W+  VSTALAAA V   SS + ++A+LNKYEA+TRGEFGIGSAAQ+GSADLRKAVH
Sbjct: 60  EPKRWQKLVSTALAAAAVIGFSSGMPSVAELNKYEADTRGEFGIGSAAQYGSADLRKAVH 119

Query: 116 VKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 175
           + ENFRRANFTSADMRESDFSG  FNGAYLEKAVAYK NF+GADLSDTLMDRMVLNEAN 
Sbjct: 120 INENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMVLNEANF 179

Query: 176 TNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG 235
           TNAVLVR+VLTRSDLGGAII GADFSDAVIDL QKQALCKYA+GTNP+TGVSTR SLGCG
Sbjct: 180 TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCG 239

Query: 236 NSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 273
           NSRRNAYG+PSSPLLSAPPQ+LLDRDGFCD  TGLC+A
Sbjct: 240 NSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQDTGLCEA 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505216|gb|AFK40674.1| unknown [Lotus japonicus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/279 (73%), Positives = 230/279 (82%), Gaps = 16/279 (5%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQL------HALSKPLWVACQISSKTESDGQFPGPY 54
           MAL+S+SPLSI ++N    SS+   +L      H  S P+ V CQ++S  +   +     
Sbjct: 2   MALNSLSPLSI-NINSLHVSSRPTSELSNSLHFHPKSSPI-VLCQMNSNRDHPQES---- 55

Query: 55  AKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAV 114
              K W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRKAV
Sbjct: 56  ---KKWGKLVSATLAAAVIA-FSSDMSALADLNKFEAEIRGEFGIGSAAQFGSADLRKAV 111

Query: 115 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 174
           HV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEAN
Sbjct: 112 HVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEAN 171

Query: 175 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 234
           LTNA+LVRTVLTRSDLGG+IIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SLGC
Sbjct: 172 LTNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGC 231

Query: 235 GNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 273
           GN RRNAYG+PSSPLLSAPPQKLL+RDGFCD  TGLCD+
Sbjct: 232 GNKRRNAYGTPSSPLLSAPPQKLLNRDGFCDEATGLCDS 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540500|ref|XP_003538726.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/274 (75%), Positives = 228/274 (83%), Gaps = 14/274 (5%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNW 60
           MAL+S+SPLSI SL+  SSS+      H+ S P+ V    ++++               W
Sbjct: 1   MALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVKSVANAES-------------TKW 47

Query: 61  RVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENF 120
              VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRKAVHV ENF
Sbjct: 48  GKVVSATLAAAVIA-FSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRKAVHVNENF 106

Query: 121 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180
           RRANFT+ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEANLTNA+L
Sbjct: 107 RRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAIL 166

Query: 181 VRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRN 240
           +RTVLTRSDLGGAIIEGADFSDAV+DL QKQALCKYA+GTNP+TGVSTR SLGCGN RRN
Sbjct: 167 LRTVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYASGTNPVTGVSTRVSLGCGNKRRN 226

Query: 241 AYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           AYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 227 AYGSPSSPLLSAPPQKLLDRDGFCDDATGLCDAK 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481963|ref|XP_003611267.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512602|gb|AES94225.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/274 (72%), Positives = 221/274 (80%), Gaps = 12/274 (4%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPGPYAKLKNW 60
           MAL+S +PLSI S +     S        +SK   V C++S   +       P    KNW
Sbjct: 1   MALNSFTPLSINSHHVSCYPSS-----SKVSKSSQVICKMSLNNDH------PQESNKNW 49

Query: 61  RVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENF 120
              VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K VHV ENF
Sbjct: 50  GKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENF 108

Query: 121 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180
           RRANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNEANLTNA+L
Sbjct: 109 RRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAIL 168

Query: 181 VRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRN 240
            RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SLGCGN RRN
Sbjct: 169 SRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRN 228

Query: 241 AYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           AYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 229 AYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481965|ref|XP_003611268.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512603|gb|AES94226.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 198/217 (91%), Gaps = 1/217 (0%)

Query: 58  KNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVK 117
           KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K VHV 
Sbjct: 17  KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVN 75

Query: 118 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN 177
           ENFRRANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNEANLTN
Sbjct: 76  ENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTN 135

Query: 178 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 237
           A+L RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SLGCGN 
Sbjct: 136 AILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNK 195

Query: 238 RRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 274
           RRNAYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 196 RRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785652|gb|ABK23807.1| unknown [Picea sitchensis]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 203/233 (87%), Gaps = 3/233 (1%)

Query: 41  SSKTESDGQFPGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIG 100
           + + + D Q      + KNW+  ++ ALA  V+ +    ++A ADLNKYEAETRGEFGIG
Sbjct: 58  TDQHKKDAQPASATPESKNWQRCLAAALATIVIGT---GMNAEADLNKYEAETRGEFGIG 114

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           SAAQFGSA+LRK VH  ENFRRANFTSAD+RESDFSGS FNGAYLEKAVAYK NFTGADL
Sbjct: 115 SAAQFGSAELRKTVHANENFRRANFTSADIRESDFSGSTFNGAYLEKAVAYKTNFTGADL 174

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGT 220
           SDTLMDRMVLNEANLTNAVLVR+VLTRSDLGGAIIEGADFSDAVID  QKQALCKYA+GT
Sbjct: 175 SDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDFTQKQALCKYASGT 234

Query: 221 NPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 273
           NPITG+STRKSLGCGNSRRNAYG+PS+PLLSAPP+KLLD+DGFCDS TGLCDA
Sbjct: 235 NPITGISTRKSLGCGNSRRNAYGTPSAPLLSAPPEKLLDKDGFCDSSTGLCDA 287

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2202033	280	AT1G12250 "AT1G12250" [Arabido	0.923	0.903	0.640	1.1e-78
TAIR|locus:2055023	224	AT2G44920 "AT2G44920" [Arabido	0.394	0.482	0.378	7.3e-11
UNIPROTKB|Q0BZZ2	245	HNE_2256 "Pentapeptide repeat	0.354	0.395	0.383	7.1e-07
UNIPROTKB|Q74B06	254	GSU2404 "Pentapeptide repeat d	0.354	0.381	0.352	4.5e-06
TIGR_CMR|GSU_2404	254	GSU_2404 "pentapeptide repeat	0.354	0.381	0.352	4.5e-06
TAIR|locus:2160230	298	FIP2 [Arabidopsis thaliana (ta	0.364	0.335	0.33	0.00032
UNIPROTKB|Q2GFB5	607	ECH_1083 "Pentapeptide repeat	0.390	0.176	0.325	0.00045
TIGR_CMR|ECH_1083	607	ECH_1083 "pentapeptide repeat	0.390	0.176	0.325	0.00045
UNIPROTKB|Q2GIU2	564	APH_1170 "Pentapeptide repeat	0.419	0.203	0.295	0.00069
TIGR_CMR|APH_1170	564	APH_1170 "pentapeptide repeat	0.419	0.203	0.295	0.00069

TAIR|locus:2202033 AT1G12250 "AT1G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 169/264 (64%), Positives = 186/264 (70%)

Query:    18 SSSSKGPYQLHALSKPLWVACQISSKT-----ESDGQFPG--PYAKLKNWRXXXXXXXXX 70
             SS S+ PY  H   + L    Q+SS++     +S     G    A+   W+         
Sbjct:    21 SSVSRSPY--H-FQRYLLRRLQLSSRSNLEIKDSSNTREGCCSSAESNTWKRILSAAMAA 77

Query:    71 XXXXXXXXXXXXLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADM 130
                         +A+LN++EA+TRGEFGIGSAAQ+GSADL K VH  ENFRRANFTSADM
Sbjct:    78 AVIASSSGVPA-MAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADM 136

Query:   131 RESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDL 190
             RESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEANLTNAVLVR+VLTRSDL
Sbjct:   137 RESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDL 196

Query:   191 GGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGXXXXXXX 250
             GGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TRKSLGCGNSRRNAYG       
Sbjct:   197 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGCGNSRRNAYGSPSSPLL 256

Query:   251 XXXXXXXXDRDGFCDSGTGLCDAK 274
                      RDGFCD  TGLCD K
Sbjct:   257 SAPPQRLLGRDGFCDEKTGLCDVK 280

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2055023 AT2G44920 "AT2G44920" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 45/119 (37%), Positives = 67/119 (56%)

Query:   122 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANLT 176
             R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  + NLT
Sbjct:   110 RQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNLT 164

Query:   177 NAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 234
             NA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +L C
Sbjct:   165 NANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 223

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q0BZZ2 HNE_2256 "Pentapeptide repeat domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 132 (51.5 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 41/107 (38%), Positives = 56/107 (52%)

Query:   102 AAQFGSADLRKAVHVKENFRRANFTSADMRE-----SDFSGSKFNGAYLEKAVAYKANFT 156
             +A    ADLR A      F  A F +A M++     +DFS ++  GA LEKA     NF 
Sbjct:    82 SANVTGADLRGADLTSARFADATFNNARMQDVLASGADFSRARLQGANLEKARLIGVNFE 141

Query:   157 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             GA L   L  R  L  A+L+ A    T+L R++L G I +GA+ S+A
Sbjct:   142 GASL---LFAR--LETADLSGANCTGTILDRANLRGTIFDGANLSEA 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74B06 GSU2404 "Pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:   102 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 161
             A  F  A+L  A     +   A F +ADMR +  SG     AY+  A    AN +GAD+ 
Sbjct:    76 ACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSG-----AYIHHAKFVGANLSGADMR 130

Query:   162 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
                +++   ++ANLTNA      L  ++LGGA++ G +FS A
Sbjct:   131 KVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFA 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2404 GSU_2404 "pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:   102 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 161
             A  F  A+L  A     +   A F +ADMR +  SG     AY+  A    AN +GAD+ 
Sbjct:    76 ACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSG-----AYIHHAKFVGANLSGADMR 130

Query:   162 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
                +++   ++ANLTNA      L  ++LGGA++ G +FS A
Sbjct:   131 KVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFA 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160230 FIP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00032, P = 0.00032
 Identities = 33/100 (33%), Positives = 47/100 (47%)

Query:   104 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 163
             +F SA+LR A+    N + AN   A +    F G+    A+L+ A    AN  GA+L   
Sbjct:   192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGA 251

Query:   164 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
              +    L+ AN   A L R  L   +L  A +EGA+   A
Sbjct:   252 NLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGA 291

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2GFB5 ECH_1083 "Pentapeptide repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
 Identities = 40/123 (32%), Positives = 58/123 (47%)

Query:    96 EFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK-- 152
             EFG   S A F   DLR +V    N   ANFT A++  S F  S   GA    A   K  
Sbjct:    66 EFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSN 125

Query:   153 --------ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 204
                     ANFT ADL  T + +  +N  N + + +  ++LT  ++ G++   A+FS+  
Sbjct:   126 IKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILT--EVNGSL---ANFSETE 180

Query:   205 IDL 207
             + L
Sbjct:   181 LKL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_1083 ECH_1083 "pentapeptide repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
 Identities = 40/123 (32%), Positives = 58/123 (47%)

Query:    96 EFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK-- 152
             EFG   S A F   DLR +V    N   ANFT A++  S F  S   GA    A   K  
Sbjct:    66 EFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSN 125

Query:   153 --------ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 204
                     ANFT ADL  T + +  +N  N + + +  ++LT  ++ G++   A+FS+  
Sbjct:   126 IKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILT--EVNGSL---ANFSETE 180

Query:   205 IDL 207
             + L
Sbjct:   181 LKL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GIU2 APH_1170 "Pentapeptide repeat family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 113 (44.8 bits), Expect = 0.00069, P = 0.00069
 Identities = 34/115 (29%), Positives = 51/115 (44%)

Query:   103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             ++F + DL+ A     +      TS+D+  S F GS    A L+K   Y A F+ A+L+ 
Sbjct:    88 SRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTL 147

Query:   163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYA 217
               +    L +AN  +A     V+  SDL      GA+   A I  +  Q    YA
Sbjct:   148 VSITESTLRKANFQDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYA 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1170 APH_1170 "pentapeptide repeat family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 113 (44.8 bits), Expect = 0.00069, P = 0.00069
 Identities = 34/115 (29%), Positives = 51/115 (44%)

Query:   103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             ++F + DL+ A     +      TS+D+  S F GS    A L+K   Y A F+ A+L+ 
Sbjct:    88 SRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTL 147

Query:   163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYA 217
               +    L +AN  +A     V+  SDL      GA+   A I  +  Q    YA
Sbjct:   148 VSITESTLRKANFQDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYA 202


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       226   0.00078  113 3  11 22  0.42    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.99u 0.12s 17.11t   Elapsed:  00:00:01
  Total cpu time:  16.99u 0.12s 17.11t   Elapsed:  00:00:01
  Start:  Sat May 11 06:17:57 2013   End:  Sat May 11 06:17:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1Q1	TL225_ARATH	No assigned EC number	0.7153	0.9963	0.975	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00030850	hypothetical protein (275 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)				•			•		0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	6e-14
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	4e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	6e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	8e-11
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	6e-08
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	1e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	3e-06
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	6e-06
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	2e-05
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	3e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	4e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	5e-05
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	5e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	6e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	2e-04
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	2e-04
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	5e-04
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	7e-04
PRK15377	782	PRK15377, PRK15377, E3 ubiquitin-protein ligase So	0.002

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
           A    A+L  A     N   AN + AD+  +D SG+  +GA L  A    AN +GA+LS 
Sbjct: 128 ANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSG 187

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
             +    L+ A+L+ A L    L  ++LGGA + GA+   A +  A
Sbjct: 188 ADLRNANLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query: 97  FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 156
               + A    ADL  A     N   AN + A++  ++ S +  +GA L  A    A+ +
Sbjct: 107 LSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLS 166

Query: 157 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           GA+LS   +    L+ ANL+ A L    L+ +DL GA + GA+  +A
Sbjct: 167 GANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNA 213

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMR-ESDFSGSKFNGAYLEKAVAYKANFTGAD 159
             A     DL  A     +   AN   AD+   +D SG+   GA L  A    AN +GA+
Sbjct: 47  ENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGAN 106

Query: 160 LS---DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
           LS      +    L+ ANL+NA L    L+ ++L GA +  A+ S A +  A
Sbjct: 107 LSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGA 158

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A    A+L  A     N   A+ + AD+  +D SG+  +GA L  A    AN +GADL
Sbjct: 136 SGANLNGANLSNA-----NLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADL 190

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            +  +    L+ A+LT A LV   L  ++L GA + GAD S A
Sbjct: 191 RNANLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)

Query: 83  LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 142
           LADL+   +  +G   + +          +      NF  AN +  D+  ++ SG+  + 
Sbjct: 9   LADLDLESSRLQGIRELKANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSN 68

Query: 143 AYLEKA-VAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFS 201
           A L  A ++  A+ +GADL    +    L+ ANL+ A L  +  TR++L GA + GA+ S
Sbjct: 69  ANLRGADLSKGADLSGADLEGANLRGANLSGANLSGANL--SNATRANLSGADLSGANLS 126

Query: 202 DAVIDLAQ-KQALCKYAN 218
           +A +  A    A    AN
Sbjct: 127 NANLTGANLSGANLNGAN 144

Length = 238

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
           +FR  +F + D++  +FS +            +  NF+  DL D       L  A  +N 
Sbjct: 2   DFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSNC 61

Query: 179 VLVRTVLTRSDLGGAIIEGADF 200
            L     + S      ++  DF
Sbjct: 62  DLKNVNFSGS------LKDCDF 77

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
           N   AN   AD+R +D SG+   GA L       AN +GA+LS 
Sbjct: 2   NLSGANLRGADLRGADLSGADLTGANLS-----GANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 133 SDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGG 192
           +DF    F    L+      A     + S+  +  +  ++ +L +       L  +    
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSN 60

Query: 193 AIIEGADFS 201
             ++  +FS
Sbjct: 61  CDLKNVNFS 69

Length = 77

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A    A+L  A     N   AN + AD+R ++ SG+  +GA L  A    AN  GA+L
Sbjct: 161 SGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANLGGANL 220

Query: 161 SDTLMDRMVLNEANLTNA 178
               +    L+ A L + 
Sbjct: 221 FGANLLGADLSGATLGDV 238

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)

Query: 153 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 202
           AN +GA+L            A+L  A L    LT ++L GA + GA+ S 
Sbjct: 1   ANLSGANLR----------GADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 10/79 (12%)

Query: 128 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTR 187
           AD R   F                  NF+ A L +       L   N ++  L     T 
Sbjct: 1   ADFRNCSFENCDLKN----------VNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTE 50

Query: 188 SDLGGAIIEGADFSDAVID 206
           +DL  A     D  +    
Sbjct: 51  ADLKNAKFSNCDLKNVNFS 69

Length = 77

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)

Query: 106 GSADLRKAVHVKENFRRANFTSADMRESDFSGS----------KFNGAYLEKAVAYKANF 155
           G  +L+ AV    N    N   AD+  ++  G+           F GA L       +NF
Sbjct: 150 GGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNF 209

Query: 156 TGADLSDTLMDRMVLNEANLTNAVLVRTVL---------------TRSDLGGAIIEGADF 200
             A L D++M    L+ ANLT A L    L                 ++L GA +  AD 
Sbjct: 210 KNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADM 269

Query: 201 SDAVI 205
           S A +
Sbjct: 270 SGATL 274

Length = 350

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSG-----SKFNGAYLEKAVAYKANFTG 157
           + F +A L  ++        AN T A+++ +   G        +GA ++      A    
Sbjct: 207 SNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIR 266

Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           AD+S   +    +  A +  AVL R  L ++      ++GAD ++A
Sbjct: 267 ADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEA 312

Length = 350

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 106 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 165
           G  +LR       N    +F   D+ + D S + F    L       AN   A+L    +
Sbjct: 152 GFLNLRGV-----NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNL 206

Query: 166 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 202
               + +ANLT+A L    ++  +L  AI+ G+D +D
Sbjct: 207 MGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTD 243

Length = 291

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 39.3 bits (93), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 170 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           L+ ANL  A L    L+ +DL GA + GA+ S A
Sbjct: 3   LSGANLRGADLRGADLSGADLTGANLSGANLSGA 36

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY-----KANFTG 157
           A    A+L  AV    +   ANF  A++  +    S F  A LE ++        AN TG
Sbjct: 172 ADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTG 231

Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRT-----VLTRSDLGGAIIEGADFSDAVIDLA 208
           A+L    +    + E N + A +  T      L R+D+ GA ++GA    A+++ A
Sbjct: 232 ANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGA 287

Length = 350

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 123 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 182
           A+F    +   +  G+    A L       +N T A+L+   +    ++  NLT A+L  
Sbjct: 179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFG 238

Query: 183 TVLTRSDLGGAIIEGADFSDA 203
           + LT + L GA ++    + A
Sbjct: 239 SDLTDTKLNGAKLDKIALTLA 259

Length = 291

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 36.6 bits (86), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 142
           A    A+LR A     +   A+ T A++  ++ SG+  +G
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             F + DL+         +  NF++  +   +FS          +A    A F+  DL +
Sbjct: 6   CSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSNCDLKN 65

Query: 163 TLMDRMVLNEANL 175
                  L + + 
Sbjct: 66  VNFSG-SLKDCDF 77

Length = 77

>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 75  SCSSNISALADLNKYEAETRGEFGIGSAAQFGSA--DLRKAVHVKENFRRANFTSA---- 128
           S  +  S  +  +  +  T       +  +   A  D   A     NF + N +      
Sbjct: 160 SLQATSSPSSPADWAKKLTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFMLRD 219

Query: 129 --DMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 186
              ++  +FS SKF  + +      +  FT + LSD +      + +++  A L  ++ T
Sbjct: 220 GDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEASLKYSITT 279

Query: 187 R-------SDLGGAII-EGADFSDAVI 205
           +       + L   II   A+ S  ++
Sbjct: 280 QQQPSFIETTLKNTIIIHKANLSGVIL 306

Length = 782

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
PRK15197	291	secreted effector protein PipB; Provisional	99.71
PRK15197	291	secreted effector protein PipB; Provisional	99.71
PRK15196	350	secreted effector protein PipB2; Provisional	99.64
PRK15196	350	secreted effector protein PipB2; Provisional	99.62
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.61
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.58
PRK09718	512	hypothetical protein; Validated	99.55
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.54
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.54

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.71  E-value=2.2e-18  Score=158.69  Aligned_cols=109  Identities=20%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccce
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  179 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~  179 (274)
                      +.+++|.+++|++++|.+++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+|+
T Consensus       156 L~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~  235 (291)
T PRK15197        156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI  235 (291)
T ss_pred             CCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCE
Confidence            45555555555555555555555555555555555555555555555555555555555555555554444444444444


Q ss_pred             ecccccccccccCcEEeCCcccCc-eeCHH
Q 023997          180 LVRTVLTRSDLGGAIIEGADFSDA-VIDLA  208 (274)
Q Consensus       180 l~~a~l~~a~f~~a~l~gadf~~A-~L~~~  208 (274)
                      |.+++|++++|.+++|.+++|.++ .|.+.
T Consensus       236 L~gAdLs~A~L~gAnL~~A~L~~a~~L~ga  265 (291)
T PRK15197        236 LFGSDLTDTKLNGAKLDKIALTLAKALTGA  265 (291)
T ss_pred             eCCCCcCCCCCCCCCCCccccccCCCCCCC
Confidence            444444444444444444444444 44433

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.71  E-value=3.9e-18  Score=157.06  Aligned_cols=109  Identities=21%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccce
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  179 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~  179 (274)
                      +++++|++++|++++|.+++|++++|.+++|.+++|.+++|++++|.+++|.+++|.+++|++++|.+++|.+|+|.+++
T Consensus       161 Ls~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L~gAd  240 (291)
T PRK15197        161 LAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSD  240 (291)
T ss_pred             CCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCEeCCCC
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             ecccccccccccCcEEeCC-cccCceeCHH
Q 023997          180 LVRTVLTRSDLGGAIIEGA-DFSDAVIDLA  208 (274)
Q Consensus       180 l~~a~l~~a~f~~a~l~ga-df~~A~L~~~  208 (274)
                      |++++|.+++|.+++|.++ +|++++|++.
T Consensus       241 Ls~A~L~gAnL~~A~L~~a~~L~gad~~ga  270 (291)
T PRK15197        241 LTDTKLNGAKLDKIALTLAKALTGADLTGS  270 (291)
T ss_pred             cCCCCCCCCCCCccccccCCCCCCCcccCC
Confidence            4444444444444444444 4444444433

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.64  E-value=7.6e-17  Score=152.53  Aligned_cols=7  Identities=14%  Similarity=0.135  Sum_probs=3.4

Q ss_pred             CeeEEee
Q 023997           33 PLWVACQ   39 (274)
Q Consensus        33 ~~~~~~~   39 (274)
                      |++|-=+
T Consensus       103 ~v~v~v~  109 (350)
T PRK15196        103 QVIVRVS  109 (350)
T ss_pred             cEEEEEe
Confidence            4555433

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.62  E-value=2.1e-16  Score=149.52  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=17.1

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCcc
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK  139 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~  139 (274)
                      +.+++|++++|.+++|.+++|++++|.+++|.+++|.+++
T Consensus       189 ~~~a~L~~AnLs~a~f~~a~L~~A~L~~a~l~~A~f~~~n  228 (350)
T PRK15196        189 CEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHAN  228 (350)
T ss_pred             ccCCeecCcchhhhhhccCccccceecccccceeEccCCE
Confidence            3444444444444444444444444444444333333333

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.61  E-value=4e-16  Score=157.10  Aligned_cols=105  Identities=14%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCce-ecCccccccccccceeecceecccccccccccceeecceeeccc
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESD-FSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA  178 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~-fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A  178 (274)
                      +++++|.++||++++|.+++|.+++|.+++|++++ |.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|.+|
T Consensus       187 Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgA  266 (782)
T PRK15377        187 GEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS  266 (782)
T ss_pred             CccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCC
Confidence            45566666666666666666666666666666666 66666666666666666666666666555555555555555555


Q ss_pred             eeccccccccc--ccCcEEeCCcccCce
Q 023997          179 VLVRTVLTRSD--LGGAIIEGADFSDAV  204 (274)
Q Consensus       179 ~l~~a~l~~a~--f~~a~l~gadf~~A~  204 (274)
                      +|.+++|.+++  +.++++.+++|++|+
T Consensus       267 dLkgADLSgS~lt~~~inLs~A~LkGA~  294 (782)
T PRK15377        267 DMNEASLKYSITTQQQPSFIETTLKNTI  294 (782)
T ss_pred             CCCCCCCCCCcccccccccchhhcCCcE
Confidence            55555555552  233444444444444

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.58  E-value=8.4e-16  Score=154.81  Aligned_cols=108  Identities=22%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             cCCCceecCccccCccccCceecCceeccce-ecCceecCccccccccccceeecceecccccccccccceeecceeecc
Q 023997           99 IGSAAQFGSADLRKAVHVKENFRRANFTSAD-MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN  177 (274)
Q Consensus        99 ~lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~-l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~  177 (274)
                      .+.+++|++++|++++|.+++|.+++|.+++ |++|+|.+++|.+++|.++.|.+|+|.+++|+++.|.+++|.+|+|.+
T Consensus       191 dFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkg  270 (782)
T PRK15377        191 TYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNE  270 (782)
T ss_pred             CcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCC
Confidence            3566777777777777777777777777776 677766666666666666666666666666666666666666666666


Q ss_pred             ceeccc-------ccccccccCcE-EeCCcccCceeC
Q 023997          178 AVLVRT-------VLTRSDLGGAI-IEGADFSDAVID  206 (274)
Q Consensus       178 A~l~~a-------~l~~a~f~~a~-l~gadf~~A~L~  206 (274)
                      ++|.++       ++.+++|+||+ +.+|+|.|+.++
T Consensus       271 ADLSgS~lt~~~inLs~A~LkGA~I~~gAnLlGAiL~  307 (782)
T PRK15377        271 ASLKYSITTQQQPSFIETTLKNTIIIHKANLSGVILN  307 (782)
T ss_pred             CCCCCCcccccccccchhhcCCcEeccCCccccceee
Confidence            666665       23334444444 244444444444

>PRK09718 hypothetical protein; Validated

Probab=99.55  E-value=3.5e-15  Score=144.02  Aligned_cols=105  Identities=15%  Similarity=0.302  Sum_probs=50.8

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCcccccc-----ccccceeecceecccccccccccceeeccee
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA-----YLEKAVAYKANFTGADLSDTLMDRMVLNEAN  174 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a-----~f~~a~f~~anf~gadf~~a~l~~a~f~~ad  174 (274)
                      +.+|+|++|+|++++|.+++|.++.|.++.|.+|+|.+++|.++     .|.++.|.+|++.|++|+++.|.++.|.+|+
T Consensus        97 FegCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA~FarA~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCn  176 (512)
T PRK09718         97 LTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYVDFSKNILDTVDFSQSQ  176 (512)
T ss_pred             EcccEecCCEEeeceecCCEEEeEEEeccccCccccccCCCCCCccccceecceEEEeccccCcccccCccCCcEEeeeE
Confidence            45555666666555555565555555555555555555555543     3333444444444444444444444444444


Q ss_pred             eccceecccccccccccCcEEeCCcccCce
Q 023997          175 LTNAVLVRTVLTRSDLGGAIIEGADFSDAV  204 (274)
Q Consensus       175 L~~A~l~~a~l~~a~f~~a~l~gadf~~A~  204 (274)
                      |.+++|.+++|++++|.+++|.+++|.+++
T Consensus       177 L~yAnFsgAnLskA~F~gCDLseAdFSEcd  206 (512)
T PRK09718        177 LTHSNFRECQIRNSNFDNCYLYASHFTRAE  206 (512)
T ss_pred             ecccCCCCCcCCCCEEeCccCCcCCccCCc
Confidence            444444444444444433333333333333

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.54  E-value=1e-15  Score=134.86  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=20.8

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCc
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGS  138 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a  138 (274)
                      ++|+|++..||+..+|+.+++++++|..++|.-|+|..+
T Consensus       138 lSGaDLskLDlr~inFkyA~ls~c~lshtNL~ca~lerA  176 (302)
T KOG1665|consen  138 LSGADLSKLDLRLINFKYANLSNCNLSHTNLQCAKLERA  176 (302)
T ss_pred             ccccchhhcccccccceehhhccccccccchhhhhhccc
Confidence            566666655555556655555555555544444443333

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.54  E-value=1.8e-15  Score=133.30  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=18.1

Q ss_pred             CCceecCccccCccccCceecCceeccceecCceecCcccccccc
Q 023997          101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYL  145 (274)
Q Consensus       101 sg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f  145 (274)
                      +|.+|+|+||+..||...||+.+++++|.|..+++..++|..|++
T Consensus       134 qGvNlSGaDLskLDlr~inFkyA~ls~c~lshtNL~ca~lerADl  178 (302)
T KOG1665|consen  134 QGVNLSGADLSKLDLRLINFKYANLSNCNLSHTNLQCAKLERADL  178 (302)
T ss_pred             ecccccccchhhcccccccceehhhccccccccchhhhhhccccc
Confidence            334444444444444444444444444444444444444443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2g0y_A	184	Crystal Structure Of A Lumenal Pentapeptide Repeat		3e-18
2f3l_A	184	Crystal Structure Of A Lumenal Rfr-Domain Protein (		8e-18
3n90_A	152	The 1.7 Angstrom Resolution Crystal Structure Of At		5e-10
2j8k_A	201	Structure Of The Fusion Of Np275 And Np276, Pentape		2e-06
3du1_X	257	The 2.0 Angstrom Resolution Crystal Structure Of He		1e-05
2j8i_A	118	Structure Of Np275, A Pentapeptide Repeat Protein F		8e-05
2o6w_A	150	Crystal Structure Of A Pentapeptide Repeat Protein		5e-04

>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece Sp 51142 At 2.3 Angstrom Resolution. Tetragonal Crystal Form Length = 184

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 159
           GS+A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GAD
Sbjct: 49  GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 219
           L++ L        A+LTNAVL   ++ R+    A I GADFS AV+D+ +   LC  A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 220 TNPITGVSTRKSLGC 234
            NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183

>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein (Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1 Angstrom Resolution Length = 184

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%)
Query: 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 159
           GS+A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GAD
Sbjct: 49  GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 219
           L++ L        A+LTNAVL   +  R+    A I GADFS AV+D+ +   LC  A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIXXRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 220 TNPITGVSTRKSLGC 234
            NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183

>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 118 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 172
           +   R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  +
Sbjct: 26  QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 80
Query: 173 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 231
            NLTNA L   T++  +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +
Sbjct: 81  VNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 140
Query: 232 LGC 234
           L C
Sbjct: 141 LLC 143

>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 36/147 (24%)
Query: 105 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 154
           F   DLR AV    N             AN   A++  +D SG+  NGA L  A     N
Sbjct: 37  FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGA-----N 91
Query: 155 FTGADLSD----------TLMDRMVLNEANLTNAVLVRTVLTR-----SDLGGAIIEGAD 199
            + ADLSD           ++D  VLN+ANL  A L + +L+      +DL  A +E AD
Sbjct: 92  LSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAAD 151
Query: 200 FSD---AVIDLAQ---KQALCKYANGT 220
            S    A+ DL Q    QA  + AN T
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLT 178

>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A Pentapeptide Repeat Protein Involved In Heterocyst Differentiation Regulation From The Cyanobacterium Nostoc Sp. Strain Pcc 7120 Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 167
           ADL +A+    +   A+   A +RE+D +G+K     LE+A   KA+  GA+L+   + R
Sbjct: 80  ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 139
Query: 168 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            +L +A+L  +   RT     DLG  ++ GAD S A
Sbjct: 140 CLLFQADLRPSSNQRT-----DLGYVLLTGADLSYA 170

>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From Nostoc Punctiforme Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 132 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 191
           E DFS     GA LE       N +GA L   ++D   L +ANL+ A L    L  +DL 
Sbjct: 34  ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 192 GAIIEGADFSDAVID 206
           GA +  AD SDA++D
Sbjct: 89  GANLSKADLSDAILD 103

>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23) From The Cyanobacterium Cyanothece 51142 Length = 150

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 120 FRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 179
             RAN ++A++ +SD S        LE A+  + N +  DL + ++    L  ANL NA 
Sbjct: 58  LTRANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENAN 112
Query: 180 LVRTVLTRSDLGGAIIEGADFSD 202
           L    L  ++L GAI+ G +  +
Sbjct: 113 LQGANLENANLRGAILTGVNLEE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	3e-42
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	4e-09
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	2e-41
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-20
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-19
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-18
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	6e-18
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-17
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-16
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-15
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-14
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-06
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	6e-20
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	5e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-13
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-12
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-20
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-19
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-19
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-16
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-13
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-19
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-19
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-18
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-18
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-17
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-12
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	7e-06
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-18
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-17
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-15
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-14
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-14
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	7e-18
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	7e-17
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	4e-16
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	5e-16
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-17
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-14
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	3e-09
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-17
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-16
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	4e-15
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	8e-14
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	4e-11
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-09
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-13
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	9e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-11
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	4e-10
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	8e-10
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-14
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	1e-09
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	6e-07
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-05

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score =  142 bits (360), Expect = 3e-42
 Identities = 55/151 (36%), Positives = 79/151 (52%)

Query: 84  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 143
            DL   + +       GS+A +    L       ++   A FT+AD+ +S+FS +   GA
Sbjct: 33  PDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGA 92

Query: 144 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               +    A+  GADL++ L        A+LTNAVL   ++ R+    A I GADFS A
Sbjct: 93  VFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLA 152

Query: 204 VIDLAQKQALCKYANGTNPITGVSTRKSLGC 234
           V+D+ +   LC  A+G NP TGVSTR+SL C
Sbjct: 153 VLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 122 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 181
             + +    R    SG K   A  E+      +    DL     D+  +     ++A   
Sbjct: 5   HHHSSGLVPR---GSGMKETAAKFERQ-----HMDSPDLGTDDDDK-AMAMVTGSSASYE 55

Query: 182 RTVLTRSDLGGAIIEGADFSDA 203
              L   D  G  +  A F++A
Sbjct: 56  DVKLIGEDFSGKSLTYAQFTNA 77

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score =  139 bits (352), Expect = 2e-41
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 1/143 (0%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
                   DL       +   R +F ++ +R+++F G+K  GA    A    A+ + ADL
Sbjct: 9   GQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADL 68

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVL-TRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 219
                    + + NLTNA L    +   +   G+ I GADF+D  +   Q+  LCK A+G
Sbjct: 69  RGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADG 128

Query: 220 TNPITGVSTRKSLGCGNSRRNAY 242
            N  TG +TR +L C     + +
Sbjct: 129 VNATTGNATRDTLLCNLEHHHHH 151

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 84.8 bits (211), Expect = 2e-20
 Identities = 24/101 (23%), Positives = 36/101 (35%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             F   +L ++ H    FR   F    +  S F+     G+               D + 
Sbjct: 35  CDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTL 94

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            ++    L   NLT   L  T L  +DL   ++ GAD S A
Sbjct: 95  AVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGA 135

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 20/109 (18%), Positives = 35/109 (32%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             + F    +  +V V    R       D   +   G+   G  L      + +    DL
Sbjct: 63  WHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDL 122

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
              ++    L+ A  T A L    L  + +   +   A    A +D+ Q
Sbjct: 123 RKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQ 171

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 80.2 bits (199), Expect = 1e-18
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           + +Q   +  R        F R     +   +    GS F    L        +FT A L
Sbjct: 43  AESQHRGSAFRNC-----TFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVL 97

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               +  + L    L    LV T L +  L GA + GA  + A
Sbjct: 98  GGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGA 140

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 78.3 bits (194), Expect = 6e-18
 Identities = 20/103 (19%), Positives = 37/103 (35%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           +   F   DL +    +  F   +F+  ++ ES   GS F     E+   + + F    +
Sbjct: 13  TGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSM 72

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             ++     L    L +      VL  +DL G  + G    + 
Sbjct: 73  LGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRET 115

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 5/104 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A F   D         N   +    +  R   F  +    +   +     + F    L
Sbjct: 28  ERAMFSECDFSGV-----NLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRL 82

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 204
               +D +    A L    L    LT   L    +   D    V
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCV 126

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 74.4 bits (184), Expect = 2e-16
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 167
                       F   +F   D+       + F+          ++   G+   +   +R
Sbjct: 5   QQWVDC-----EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFER 59

Query: 168 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             L  +      ++ +V     L    ++  DF+ A
Sbjct: 60  TTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLA 95

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 69.8 bits (172), Expect = 8e-15
 Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
                   D   AV    + R  N T   +RE+    +      L  A    A  TGA L
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARL 142

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSD-LGGAIIEGADFSDA 203
            D  +    ++      A LV   +     +  A   G   +  
Sbjct: 143 DDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 67.1 bits (165), Expect = 8e-14
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 121 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180
               +   +    DF     +  + E+A+  + +F+G +L+++         +   N   
Sbjct: 3   HMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES-----QHRGSAFRNCTF 57

Query: 181 VRTVLTRSDLGGAIIEGADFSDA 203
            RT L  S      + G+ F   
Sbjct: 58  ERTTLWHSTFAQCSMLGSVFVAC 80

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 5/54 (9%), Positives = 18/54 (33%)

Query: 150 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           ++   +   + +        L+  +   A+      +  +L  +   G+ F + 
Sbjct: 2   SHMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNC 55

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 84.4 bits (210), Expect = 6e-20
 Identities = 22/103 (21%), Positives = 37/103 (35%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
               F  A L+ A+    +   A+F ++     +    +  GA    A       T    
Sbjct: 55  KGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWF 114

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               +    L+ AN +  VL +  L  +   GA + GA FS +
Sbjct: 115 CSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGS 157

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           +   F SA +        N   ANF+   + + +   +++ GA +  A    ++ +G + 
Sbjct: 110 TRTWFCSAYITNT-----NLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEF 164

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 207
           S    +       +LTN+ L    +   DL G  ++    S  +  L
Sbjct: 165 STFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERL 211

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 83.3 bits (207), Expect = 2e-19
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A F ++            R      AD R + F        +   A     N + A+ 
Sbjct: 75  SMADFRNSSALGI-----EIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANF 129

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           S  ++++  L E     A ++    + SDL G      D+  A
Sbjct: 130 SKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAA 172

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 24/109 (22%), Positives = 38/109 (34%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A F  A     +  +  F  A  T+ ++  ++FS        L +     A   GA  
Sbjct: 95  QGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATF 154

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
           S + +     +  +   A      LT S+LG   I G D     +D  Q
Sbjct: 155 SGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQ 203

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 101 SAAQFGSADLRKAV-HVKENFRRANFTSADMR-----ESDFSGSKFNGAYLEKAVAYKAN 154
           S A     +      + +E+ +  NF+ A ++       D S + F  +           
Sbjct: 34  SGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCR 93

Query: 155 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             GAD        M+       +A +  T L+ ++    ++E  +  + 
Sbjct: 94  AQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWEN 142

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYL-EKAVAYKANFTGADLSDTLMD 166
             + +     E    + F + D   +D SG++F G    ++      NF+ A L D +  
Sbjct: 11  EKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFK 70

Query: 167 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
              L+ A+  N+  +   +      GA   GA F + +    
Sbjct: 71  SCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRT 112

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 1/90 (1%)

Query: 115 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEA 173
           H+                     S F       A      F G    D         + A
Sbjct: 3   HMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRA 62

Query: 174 NLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            L +A+     L+ +D   +   G +    
Sbjct: 63  MLKDAIFKSCDLSMADFRNSSALGIEIRHC 92

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 1/86 (1%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEANLTN 177
           +          +  + F+G K   +         A+ +G +       DR      N + 
Sbjct: 2   SHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSR 61

Query: 178 AVLVRTVLTRSDLGGAIIEGADFSDA 203
           A+L   +    DL  A    +     
Sbjct: 62  AMLKDAIFKSCDLSMADFRNSSALGI 87

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 85.2 bits (212), Expect = 6e-20
 Identities = 33/103 (32%), Positives = 51/103 (49%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S      ADL +A+    +   A+   A +RE+D +G+K     LE+A   KA+  GA+L
Sbjct: 73  SHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANL 132

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           +   + R +L +A+L  +   RT L    L GA +  AD   A
Sbjct: 133 NSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAA 175

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 82.5 bits (205), Expect = 6e-19
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A    ADL  A        +     A++ ++   G+  N A L + + ++A+   +  
Sbjct: 98  YRAILREADLTGA-----KLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSN 152

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 204
             T +  ++L  A+L+ A L    L  ++L GA +  A+F   +
Sbjct: 153 QRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTI 196

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 82.5 bits (205), Expect = 7e-19
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
              + G ++           R A+ + A +   D S +    A L +A    A      L
Sbjct: 63  RQTRLGKSNFSHT-----CLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRL 117

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            +  + +  L  ANL +A L R +L ++DL  +  +  D    
Sbjct: 118 EEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYV 160

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 78  SNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG 137
           S+++    L  Y A             F   +L++      +   A+ + AD+R++    
Sbjct: 19  SHMNVGEILRHYAA---------GKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGK 69

Query: 138 SKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 197
           S F+   L +A   +A   G DLS+  + R +L EA+LT A LV+T L  ++L  A + G
Sbjct: 70  SNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCG 129

Query: 198 ADFSDA 203
           A+ + A
Sbjct: 130 ANLNSA 135

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 25/103 (24%), Positives = 38/103 (36%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
                  ADL +A+  + +   A      + E++   +   GA L  A   +     ADL
Sbjct: 88  WGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADL 147

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             +   R  L    LT A L    L  + L  A ++GA    A
Sbjct: 148 RPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRA 190

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 78.3 bits (194), Expect = 3e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S      ADLR +     + +R +     +  +D S +    A L  A    A    A+ 
Sbjct: 138 SRCLLFQADLRPS-----SNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANF 192

Query: 161 SDTLMDRMV---LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
             T+    +   L+ A+L  A L    L  + L  A ++GAD + A++  A+
Sbjct: 193 GRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAE 244

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 78.3 bits (194), Expect = 3e-17
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
              +  +A L  A     +   A+     + +S+FS +    A L +A+ +  + + ADL
Sbjct: 43  QEIELTNASLTGA-----DLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADL 97

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
              ++    L  A L    L    L ++ L GA +  A+ S  ++  A
Sbjct: 98  YRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQA 145

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY--------K 152
             +     DL   +    +   A+  +A +  ++  G+K   A   + + +         
Sbjct: 148 RPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSG 207

Query: 153 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 202
           A+  GADLS   ++  +L +ANL  A L   +L  ++L GAI+      D
Sbjct: 208 ASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIHD 257

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
              +   A+L KA     +   AN  SA++       +    +  ++        TGADL
Sbjct: 113 VKTRLEEANLIKA-----SLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADL 167

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIEGADFSDA 203
           S   +    L+ ANL  A L R    R+        DL GA ++GAD S A
Sbjct: 168 SYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYA 218

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
           +    + +    R S  +     G  L    A K NF   +L +  +    L  A+L+ A
Sbjct: 5   HHHHHHSSGLVPRGSHMNV----GEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYA 60

Query: 179 VLVRTVLTRSDLGGAIIEGADFSDA 203
            L +T L +S+     +  AD S+A
Sbjct: 61  DLRQTRLGKSNFSHTCLREADLSEA 85

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 81.7 bits (203), Expect = 5e-19
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A    ADL  A         A    A + E+  + +    A LE+A+   AN   ADL
Sbjct: 88  RGANLSKADLSDA-----ILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADL 142

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           S+  ++   L+ A+L  A L +  L ++ L  A + GA+  DA
Sbjct: 143 SEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDA 185

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 81.0 bits (201), Expect = 9e-19
 Identities = 29/103 (28%), Positives = 52/103 (50%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A   +A L  A+  +    +AN  +A++ ++  S +    A L +A    A+ +GADL
Sbjct: 98  SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADL 157

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           +   + +  L++A L  A L    L  ++L G I+EG + + A
Sbjct: 158 AIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 32/103 (31%), Positives = 50/103 (48%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A    A L +A   + N  RA+ + A +  +D  G+  + A L  A+   A   GA L
Sbjct: 53  SGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAIL 112

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            + ++++  L  ANL  A+L    +  +DL  A +E AD S A
Sbjct: 113 DEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGA 155

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 79.0 bits (196), Expect = 5e-18
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A    A L  A     + R AN + AD+ ++    +   GA L++AV  +AN   A+L
Sbjct: 73  SRADLSGATLNGA-----DLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANL 127

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
              ++    + EA+L+ A L    L+ +DL  A +  A+   A
Sbjct: 128 EQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQA 170

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 76.0 bits (188), Expect = 6e-17
 Identities = 31/101 (30%), Positives = 46/101 (45%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             F   DLR AV    N   A    A + E++   +  + A L  A    A+  GA+LS 
Sbjct: 35  RDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSK 94

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
             +   +L+ A L  A+L   VL +++L  A +E A  S A
Sbjct: 95  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHA 135

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
           +    + +    R S     K    Y     A + +F+  DL   +++ + L+ A L  A
Sbjct: 5   HHHHHHSSGLVPRGSHMDVEKLRQLYA----AGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 179 VLVRTVLTRSDLGGAIIEGADFSDA 203
           +L    L +++L  A + GA  + A
Sbjct: 61  MLDEANLQQANLSRADLSGATLNGA 85

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 136 SGSKFNGAYLEKAVAYKANFTGADLSDT-LMDRMVLNEANLTNAVLVRTVLTRSDLGGAI 194
             S  +  +    V   ++     L           +  +L  AVL    L+ + L GA+
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAM 61

Query: 195 IEGADFSDA 203
           ++ A+   A
Sbjct: 62  LDEANLQQA 70

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 145 LEKAVAYKANFTGADLSDTLMDRMVL------NEANLTNAVLVRTVLTRSDLGGAIIEGA 198
           +  +  +  + +G     + MD   L       E + +   L   VL   +L GAI+ GA
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 199 DFSDA 203
              +A
Sbjct: 61  MLDEA 65

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 77.5 bits (192), Expect = 5e-18
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
               FG    +       +  RAN ++A++ +SD S      A L +    + +   A L
Sbjct: 44  VTTPFGMDKAKPV-----DLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAIL 98

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               +    L  ANL  A L    L  + L G  +E       
Sbjct: 99  IGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGI 141

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 75.1 bits (186), Expect = 5e-17
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
              +    DL +A     N   AN   +D+       +      L +     A   GA+L
Sbjct: 49  GMDKAKPVDLTRA-----NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANL 103

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               ++   L  ANL NA L   +LT  +L    ++G +    
Sbjct: 104 QGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKN 146

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 69.4 bits (171), Expect = 5e-15
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
                   +      +      +   +               A L  A  Y+++ +   L
Sbjct: 21  EGVNLPRENFGLKYRI--PRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIIL 78

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
            + ++    L+E +L NA+L+   L  ++L  A ++GA+  +A
Sbjct: 79  ENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENA 121

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 68.6 bits (169), Expect = 1e-14
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 107 SADLRKAVHVKENFRRANFTSADMRESDF--------SGSKFNGAYLEKAVAYKANFTGA 158
           + +L +   ++      N    ++   +F        S S           A   + T A
Sbjct: 3   TNNLYRL-ELERECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRA 61

Query: 159 DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
           +LS+  + +  L+   L NA+LV T L+ +DL  AI+ GA+   A
Sbjct: 62  NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGA 106

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           + A   +A+L ++     +       +A + E++ S +    A L  A    AN   A+L
Sbjct: 59  TRANLSNANLYQS-----DLSSIILENAILVETNLSETDLENAILIGANLQGANLENANL 113

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 202
                    L  ANL  A+L    L  + L G   +     D
Sbjct: 114 QGA-----NLENANLRGAILTGVNLEETHLKGIETDKNTVWD 150

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 78.7 bits (195), Expect = 7e-18
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 101 SAAQFGSADLRKAVHVKENFRRA-NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 159
              +    +   A         A +F    + +S F G    G  + +   + ANFT AD
Sbjct: 77  VDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEAD 136

Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
             D    +  L  +   N  L       +      I   D   A   L +
Sbjct: 137 CEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPE 186

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 76.0 bits (188), Expect = 7e-17
 Identities = 14/91 (15%), Positives = 28/91 (30%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
                ++        D SG        E     + NFT A+L+          + NL+  
Sbjct: 5   TLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLI 64

Query: 179 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
            + +T           + G +++ A     +
Sbjct: 65  SIPQTSFMEVRFVDCKMLGVNWTSAQWPSVK 95

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 11/97 (11%), Positives = 27/97 (27%)

Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 167
             L    +  E+F   + +   +    F    F      +A   +  F   +  D  +  
Sbjct: 4   KTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSL 63

Query: 168 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 204
           + + + +      V   +   +   A         A+
Sbjct: 64  ISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGAL 100

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 73.7 bits (182), Expect = 5e-16
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
            A    S D      V E+    +  S    +  F    F  A L +    +  F   +L
Sbjct: 2   PAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNL 61

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA-DFSDAVIDLA 208
           S   + +    E    +  ++    T +      +EGA  F   +++ +
Sbjct: 62  SLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDS 110

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           +  +     +  A     NF  A+   AD  +SD  GS F+   L       A+F  A  
Sbjct: 118 AGVKMVECRIHDA-----NFTEADCEDADFTQSDLKGSTFHNTKLT-----GASFIDAVN 167

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGG 192
                        ++ +  + R   +  +   
Sbjct: 168 YH----------IDIFHNDIKRARFSLPEAAS 189

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 81.5 bits (201), Expect = 1e-17
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 84  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 143
           A L+K  AE   +    SA + G     +      N+   + +   +   + S   F+GA
Sbjct: 5   ACLSK--AELTADLIWLSANRTGEESAEEL-----NYSGCDLSGLSLVGLNLSSVNFSGA 57

Query: 144 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL----VRTVLTRSDLGGAIIEGAD 199
            L+      ++ + A L +      +LNE N   A L    +R +   S+   + ++ A 
Sbjct: 58  VLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNAS 117

Query: 200 FSDAVIDLAQKQALCKYAN 218
           F  +     Q   +   A+
Sbjct: 118 FKGS--SYIQYPPILNEAD 134

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 72.7 bits (178), Expect = 1e-14
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 105 FGSADLRKA--VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
            G A L KA                    E ++SG   +G  L        NF+GA L D
Sbjct: 2   QGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDD 61

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 205
           T      L  ++L+ AVL       S L       A+ S+ +I
Sbjct: 62  T-----DLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCII 99

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
           +  RA  + A++          +     +  A + N++G DLS   +  + L+  N + A
Sbjct: 1   SQGRACLSKAELTADLIW---LSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGA 57

Query: 179 VLVRTVLTRSDLGGAIIEGADFSDA 203
           VL  T L  SDL  A++E   F ++
Sbjct: 58  VLDDTDLRMSDLSQAVLENCSFKNS 82

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK-------FNGAYLEKAV-AYK 152
           +   F  A+L   + ++  F  +NF++++++ + F GS         N A L  A+    
Sbjct: 85  NECNFCYANLSNCI-IRALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPG 143

Query: 153 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGAD 199
              +GA L D       L         L    +  SD+   I+   D
Sbjct: 144 MVLSGAILGDVKE----LFSEKSNTINLGGCYIDLSDIQENILSVLD 186

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 99  IGSAAQFGSADLRKAVHVKE-NFRRANFTSA-DMRESDFSGSKFNGAYLEKAVAYKANFT 156
           I        ADL  A+ +       A      ++     +     G Y++ +   +   +
Sbjct: 124 IQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILS 183

Query: 157 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV--IDLAQKQALC 214
             D      ++ +L   N ++       +  ++     I   + +     + ++   +  
Sbjct: 184 VLDNYTKS-NKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFS 242

Query: 215 KYANGTNPI 223
            +    N  
Sbjct: 243 IHPYLNNAN 251

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
              +F   DL         F   NF+  D+ E  F    F     E++        G DL
Sbjct: 8   EGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQS----CLLQGCDL 63

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
            +    R  L  A+ + +  +   L      G     A F++ +   + 
Sbjct: 64  REASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSY 112

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 73.7 bits (181), Expect = 6e-16
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEANLTN 177
            F    F   D+    F G +F G         +  F      D       +L   +L  
Sbjct: 6   CFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLRE 65

Query: 178 AVLVRTVLTRSDLGGAIIEGADFSDA 203
           A  +R  LT +D   +   G +  D 
Sbjct: 66  ASFLRCDLTMADCSRSQCLGLELRDC 91

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 102 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 161
                S  L+       + R A+F   D+  +D S S+  G  L    A   NF+ A  +
Sbjct: 50  RESEQSCLLQGC-----DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFA 104

Query: 162 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
           + +       EA+LT             L    + G  +  A +  A 
Sbjct: 105 NQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGAS 152

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.9 bits (166), Expect = 8e-14
 Identities = 15/109 (13%), Positives = 40/109 (36%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
            +      DLR+A  ++ +   A+ + +     +    +  G    +A         +  
Sbjct: 54  QSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYF 113

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
            +  +     + AN    +L +  L+ +   GA + GA  + + +  ++
Sbjct: 114 CEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSE 162

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 24/116 (20%), Positives = 41/116 (35%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             F  A     + V   F  A+ T  +   ++F G       L       AN  GA L+ 
Sbjct: 96  INFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAG 155

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYAN 218
           + +      + +  +  L    L + DL G  +   +     I+  Q+QAL +   
Sbjct: 156 SDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTS-ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 161
             F   DL +   V  +F          ++  D   + F    L  A   ++   G +L 
Sbjct: 30  CNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELR 89

Query: 162 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
           D     +  + A+  N + V +    + L G     A+F   +++  +
Sbjct: 90  DCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCE 137

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 19/109 (17%), Positives = 35/109 (32%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A F   DL  A   +                +FS + F       +   +A+ TG + 
Sbjct: 64  REASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNF 123

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
           S    +  +L +  L+        L  + L G+ + G++F         
Sbjct: 124 SYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVN 172

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S +Q    +LR            NF+ A         S F  A+L       ANF G  L
Sbjct: 79  SRSQCLGLELRDC-----QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLL 133

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
               +       ANL  A L  + L+ S+ G       +     +    
Sbjct: 134 EQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCD 182

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           +      +   +A     NF  ANF    + + + SG+++ GA L  A    ++ +G++ 
Sbjct: 104 ANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEF 163

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
                  + L   +L    L    L R +L G  I   D   A
Sbjct: 164 GQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQIN-EDQQQA 205

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
           A F    L         F   + ++      DFS  ++      +    + N TG + +D
Sbjct: 55  AVFDHLSLANG-----QFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFAD 109

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
           + +   +  +     A                +  ++F +      
Sbjct: 110 SYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXL 155

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 15/106 (14%), Positives = 26/106 (24%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
               +   DL         FR A F    +    F+    +    E        +     
Sbjct: 33  ENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSF 92

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 206
                 R  L   N  ++ L   +        A    A+F+    +
Sbjct: 93  HRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFN 138

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 14/104 (13%), Positives = 24/104 (23%)

Query: 106 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 165
             A L   ++ + +       +   R++ F                   F   D S+   
Sbjct: 28  DEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEW 87

Query: 166 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
                +        L  T    S L   + E      A    A 
Sbjct: 88  LSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFAN 131

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
            +F + D      +  +F R  F   ++  ++F+ S       E   A  A+F  A+ + 
Sbjct: 75  VRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
              ++  L E+          +L   DL  +          
Sbjct: 135 VHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGL 175

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 62.2 bits (151), Expect = 9e-12
 Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
               +            F   +F++ +     F    F    L        NF  + L D
Sbjct: 60  LSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLT-----GTNFADSYLXD 114

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 206
            L +    + A+   A        ++ L  +      +   +++
Sbjct: 115 CLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLE 158

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 14/109 (12%), Positives = 25/109 (22%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           +  QF S D         +F    + S       F      G     +      F     
Sbjct: 63  ANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXA 122

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
                     N  +     LV +          ++E  D +++      
Sbjct: 123 DYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTS 171

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S  ++ S    +       F R N T  +  +S      F     + A    ANF     
Sbjct: 83  SNVEWLSGSFHRV-----TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHF 137

Query: 161 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 206
           + T +      E      +L    LT S+     + G DFS    +
Sbjct: 138 NQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFE 183

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 10/116 (8%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
             F   +L        NF  +        +     + F  A        +     ++  +
Sbjct: 95  VTFLRCNLTGT-----NFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFE 149

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD-----AVIDLAQKQAL 213
                ++L   +LT +  + T L   D      E   FS        +   Q   L
Sbjct: 150 VTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTPEQAIYL 205

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 102 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFS------GSKFNGAYLEKAVAYKANF 155
           A +   A LR+           +F++AD R   FS        + +G  ++      + F
Sbjct: 19  AKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKF 78

Query: 156 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 208
           T +D+S    D      + L++ V   T  + SD+    ++ +  +       
Sbjct: 79  TYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 131

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 34/137 (24%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV----------- 149
           + +        +       F  +  +      + FS S  N  +L+ ++           
Sbjct: 79  TYSDISHLHFDEC-----RFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDT 133

Query: 150 -------AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA-DFS 201
                   +KAN +G            LNE + ++   V        LG   ++    ++
Sbjct: 134 TLKNTLIRHKANLSGVI----------LNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWT 183

Query: 202 DAVIDLAQKQALCKYAN 218
           +  +D           +
Sbjct: 184 ENAVDGFLNHEHNNGKS 200

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 23/176 (13%), Positives = 37/176 (21%), Gaps = 30/176 (17%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---------- 150
           S   F       +            ++     SD +      +   +             
Sbjct: 84  SHLHFDECRFTYS-----TLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNT 138

Query: 151 ---YKANFTGA----------DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 197
              +KAN +G                  + + L +  L   +L         L      G
Sbjct: 139 LIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNNG 198

Query: 198 ADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAP 253
                 +  L  K +  K           S R         R    S  S L   P
Sbjct: 199 KSILMTIDSLPDKYSQEKVQ--AMEDLVKSLRGGRLTEACIRPVESSLVSVLAHPP 252

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 114 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV---- 169
           +H   +   ++ +S        + +       E   A   +F+ AD  +    +++    
Sbjct: 1   MHHHHHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSF 60

Query: 170 -------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
                  +   N +N+    + ++           +  SD 
Sbjct: 61  MERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.96
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.94
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.83
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.82
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.78
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.78
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.77
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.77
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.76
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.75
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.74
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.74
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.72
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.71
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.63
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.57

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.96  E-value=6.1e-30  Score=220.21  Aligned_cols=136  Identities=39%  Similarity=0.591  Sum_probs=130.2

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccce
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  179 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~  179 (274)
                      +.+.+|++++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|+++.|.+++|.+|+|++++
T Consensus        49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~  128 (184)
T 2f3l_A           49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV  128 (184)
T ss_dssp             ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred             ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccccccCcEEeCCcccCceeCHHHHHHHhhhccCCCCCCCcchhhhcCCC
Q 023997          180 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG  235 (274)
Q Consensus       180 l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~~~lc~~a~g~np~tg~~tr~sLgc~  235 (274)
                      |.+++|.+++|.+++|++++|++|+|++.+++.+|.+++|+||+||++||++|||+
T Consensus       129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~  184 (184)
T 2f3l_A          129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ  184 (184)
T ss_dssp             CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred             eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999996

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.94  E-value=3.8e-27  Score=196.31  Aligned_cols=139  Identities=29%  Similarity=0.395  Sum_probs=126.6

Q ss_pred             cCCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccc
Q 023997           99 IGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA  178 (274)
Q Consensus        99 ~lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A  178 (274)
                      .+.+++|++++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|.++
T Consensus         7 ~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a   86 (152)
T 3n90_A            7 PYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNA   86 (152)
T ss_dssp             CCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             cccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCC
Confidence            35677888888888888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccc-ccccCcEEeCCcccCceeCHHHHHHHhhhccCCCCCCCcchhhhcCCCCC
Q 023997          179 VLVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS  237 (274)
Q Consensus       179 ~l~~a~l~~-a~f~~a~l~gadf~~A~L~~~q~~~lc~~a~g~np~tg~~tr~sLgc~~~  237 (274)
                      +|.++.|.+ ++|.+++|++++|+++.|.+.+++++|.+++|+||.+|..||++|.|...
T Consensus        87 ~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~  146 (152)
T 3n90_A           87 NLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE  146 (152)
T ss_dssp             BCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred             CCCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence            999999995 99999999999999999999999999999999999999999999977653

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.83  E-value=1.2e-21  Score=163.01  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=51.7

Q ss_pred             CCCceecCccccCccccCc-------------eecCceeccceecCceecCccccccccccceeecceeccccccccccc
Q 023997          100 GSAAQFGSADLRKAVHVKE-------------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD  166 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~-------------dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~  166 (274)
                      +.+|+|++++|++++|+++             +|.+++|.+++|.+++|++++|.+++|.+++|.+|+|.+++|++++|.
T Consensus        15 ~~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~   94 (150)
T 2o6w_A           15 CVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLE   94 (150)
T ss_dssp             CTTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             cCCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCC
Confidence            4455555555555555555             444444444444444444444444444444444444444444444444


Q ss_pred             ceeecceeeccceecccccccccccCcEEeCCcccCceeCH
Q 023997          167 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL  207 (274)
Q Consensus       167 ~a~f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L~~  207 (274)
                      +++|.+|+|++++|.+++|++++|.+++|++++|++++|.+
T Consensus        95 ~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~  135 (150)
T 2o6w_A           95 NAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEE  135 (150)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCC
Confidence            44444444444444444444444444444444444444443

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.82  E-value=1.4e-21  Score=162.48  Aligned_cols=96  Identities=23%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             cccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccceecccccccccccCc
Q 023997          114 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGA  193 (274)
Q Consensus       114 ~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l~~a~l~~a~f~~a  193 (274)
                      +|.+++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|++|+|.+++|.+++|.++
T Consensus        47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a  126 (150)
T 2o6w_A           47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA  126 (150)
T ss_dssp             STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence            77777777777777777777777777777777766666666666666666666666666666666666666666666666


Q ss_pred             EEeCCcccCceeCHHH
Q 023997          194 IIEGADFSDAVIDLAQ  209 (274)
Q Consensus       194 ~l~gadf~~A~L~~~q  209 (274)
                      +|.+++|++++|.+..
T Consensus       127 ~l~~a~l~~a~l~ga~  142 (150)
T 2o6w_A          127 ILTGVNLEETHLKGIE  142 (150)
T ss_dssp             BCTTCBCTTCBCTTCB
T ss_pred             CccCCCCCCCCcCCCE
Confidence            6666666666655543

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.78  E-value=2.7e-20  Score=154.76  Aligned_cols=110  Identities=23%  Similarity=0.310  Sum_probs=65.4

Q ss_pred             CCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeecccee
Q 023997          101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL  180 (274)
Q Consensus       101 sg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l  180 (274)
                      .|++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++|.+|+|.+++|++++|.+++|.+|+|++++|
T Consensus         4 ~g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f   83 (152)
T 3n90_A            4 GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNL   83 (152)
T ss_dssp             GGCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred             CCCcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCc
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccccccccccC-cEEeCCcccCceeCHHHH
Q 023997          181 VRTVLTRSDLGG-AIIEGADFSDAVIDLAQK  210 (274)
Q Consensus       181 ~~a~l~~a~f~~-a~l~gadf~~A~L~~~q~  210 (274)
                      .+++|.+++|.+ ++|++++|++|+|.+..+
T Consensus        84 ~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l  114 (152)
T 3n90_A           84 TNANLEGATMMGNTSFKGSNITGADFTDVPL  114 (152)
T ss_dssp             TTCBCTTCBCCSSCBCTTCBCTTCBCTTCCC
T ss_pred             CCCCCCCCEEcCCceECCCEecCCEecCCcc
Confidence            666666666553 556666666666655544

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.78  E-value=8.6e-20  Score=155.79  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             ccccceeecceeeccceecccccccccccCcEEeCCcccCceeCHHHH
Q 023997          163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK  210 (274)
Q Consensus       163 a~l~~a~f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~  210 (274)
                      ++|.+++|.+|+|++++|.+++|++++|.+++|+++||++|+|.+.++
T Consensus       110 a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~  157 (186)
T 2bm5_A          110 CRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW  157 (186)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred             CEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecccc
Confidence            333333344444444444444444444455555555555555555544

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.77  E-value=1.5e-19  Score=157.34  Aligned_cols=17  Identities=18%  Similarity=0.034  Sum_probs=7.1

Q ss_pred             CCcccCceeCHHHHHHH
Q 023997          197 GADFSDAVIDLAQKQAL  213 (274)
Q Consensus       197 gadf~~A~L~~~q~~~l  213 (274)
                      +++|++|+|+..|...+
T Consensus       189 ~a~l~ga~~~~~q~~~l  205 (214)
T 2w7z_A          189 PNYLSGLXVTPEQAIYL  205 (214)
T ss_dssp             GGGCTTCEECHHHHHHH
T ss_pred             HHHcCCcccCHHHHHHH
Confidence            33344444444444443

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.77  E-value=4.1e-19  Score=154.75  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=8.4

Q ss_pred             EeCCcccCceeCHHHHHHH
Q 023997          195 IEGADFSDAVIDLAQKQAL  213 (274)
Q Consensus       195 l~gadf~~A~L~~~q~~~l  213 (274)
                      +++++|++|+++..|...|
T Consensus       189 l~~a~l~ga~~~~~q~~~l  207 (217)
T 2xty_A          189 IRGVDLQGVKLDNYQASLL  207 (217)
T ss_dssp             TTTSCCTTCEECHHHHHHH
T ss_pred             CCCCccCcCEechHHHHHH
Confidence            3333444444444444443

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.76  E-value=1.6e-19  Score=155.13  Aligned_cols=110  Identities=24%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             ceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccceecc
Q 023997          103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  182 (274)
Q Consensus       103 ~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l~~  182 (274)
                      ..+.+++|++++|.+++|++++|.+++|.+|+|.+++|.+++|.++.|.+|+|.+++|++++|.++.|.+++|++|+|.+
T Consensus        47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~  126 (184)
T 2f3l_A           47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN  126 (184)
T ss_dssp             -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred             ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence            44556666666666777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccccccccCcEEeCCcccCceeCHHHHHH
Q 023997          183 TVLTRSDLGGAIIEGADFSDAVIDLAQKQA  212 (274)
Q Consensus       183 a~l~~a~f~~a~l~gadf~~A~L~~~q~~~  212 (274)
                      ++|.+++|.+++|.+++|++|+|.+..+..
T Consensus       127 a~l~~a~l~~a~f~~a~L~gadf~~a~l~~  156 (184)
T 2f3l_A          127 AVLTEAIMMRTKFDDAKITGADFSLAVLDV  156 (184)
T ss_dssp             CBCTTCEEEEEECTTCBCTTCBCTTCEECH
T ss_pred             CEeeCCEECCCEEeCCEecCCEecCCCCCc
Confidence            777777777777777777777776665433

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.75  E-value=7e-19  Score=152.32  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=15.6

Q ss_pred             ecccccccccccCcEEeCCcccCceeCHHHHHHHhh
Q 023997          180 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK  215 (274)
Q Consensus       180 l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~~~lc~  215 (274)
                      |++++|++++|.++++.+++|++++++..|+..+++
T Consensus       173 l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~  208 (216)
T 3pss_A          173 LQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE  208 (216)
T ss_dssp             CTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred             cCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence            333333333333334444444444555555544443

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.74  E-value=8.2e-19  Score=150.17  Aligned_cols=61  Identities=10%  Similarity=0.239  Sum_probs=25.8

Q ss_pred             eecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccc
Q 023997          104 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL  164 (274)
Q Consensus       104 ~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~  164 (274)
                      +|++++|++++|++++|.+++|.+|+|.+|+|++++|.+++|.++.|.+|+|.+++|+++.
T Consensus        30 ~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~   90 (200)
T 2xt2_A           30 RFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ   90 (200)
T ss_dssp             EEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSC
T ss_pred             EEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCc
Confidence            3333333333333444444444444444444444444444444444444444444444444

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.74  E-value=6e-19  Score=151.02  Aligned_cols=105  Identities=12%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             CCceecCccccCccccCceecCceeccceecCceecCcccccccccc-----------ceeecceeccccccccccccee
Q 023997          101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-----------AVAYKANFTGADLSDTLMDRMV  169 (274)
Q Consensus       101 sg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~-----------a~f~~anf~gadf~~a~l~~a~  169 (274)
                      ++++|++++|.+++|.+|+|.+++|.+++|.+++|.+|+|.+++|.+           +.|.+|+|.+++|.+++|.+++
T Consensus        42 ~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~  121 (200)
T 2xt2_A           42 TEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVK  121 (200)
T ss_dssp             TTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCE
T ss_pred             cCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCE
Confidence            33444444444444444444444444444333333333333333333           3344444444444444444444


Q ss_pred             ecceeeccceecccccccccccCcEEeCCcccCcee
Q 023997          170 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI  205 (274)
Q Consensus       170 f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L  205 (274)
                      |.+|+|.+++|.+++|++++|.+++|++++|.+++|
T Consensus       122 f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l  157 (200)
T 2xt2_A          122 MVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKL  157 (200)
T ss_dssp             EESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBC
T ss_pred             ecCCEeecccCCCCccccCCccCcccCCCCccCCcc
Confidence            444444444444444444444333333333333333

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.72  E-value=1.6e-18  Score=172.29  Aligned_cols=106  Identities=20%  Similarity=0.301  Sum_probs=49.3

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccccccee----ecceee
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----LNEANL  175 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~----f~~adL  175 (274)
                      +.+++|++++|++++|.+++|++++|.+|+|.+|+|.+|+|.+++|.+++|.+|+|.+++|.+++|.+++    |.+|+|
T Consensus        29 f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~L  108 (613)
T 3nb2_A           29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNF  108 (613)
T ss_dssp             TTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBC
T ss_pred             cCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEe
Confidence            3444555555555555544444444444444444444444444444444444444444444444444444    444444


Q ss_pred             ccceecccccccccccC--cEEeCCcccCcee
Q 023997          176 TNAVLVRTVLTRSDLGG--AIIEGADFSDAVI  205 (274)
Q Consensus       176 ~~A~l~~a~l~~a~f~~--a~l~gadf~~A~L  205 (274)
                      ++|+|.+|+|++++|.+  |+|++++|++|.|
T Consensus       109 sgAdL~~AdL~gA~f~~~~adL~gAdL~gA~L  140 (613)
T 3nb2_A          109 SNSNLKNASFKGSSYIQYPPILNEADLTGAII  140 (613)
T ss_dssp             TTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred             cCCeecccEEeccEEecCccceeccccCCCee
Confidence            44444444444444443  4444444444444

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.71  E-value=2.8e-18  Score=170.61  Aligned_cols=111  Identities=25%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             cCCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccc----ccceeeccee
Q 023997           99 IGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL----MDRMVLNEAN  174 (274)
Q Consensus        99 ~lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~----l~~a~f~~ad  174 (274)
                      .+++++|++++|++++|++++|.+++|.+|+|++|+|.+++|.+++|.+++|.+|+|.+|+|++++    |.+++|.+|+
T Consensus        33 dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAd  112 (613)
T 3nb2_A           33 NYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSN  112 (613)
T ss_dssp             BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCB
T ss_pred             eeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCe
Confidence            366677777777777777777777777777777776666666666666666666666666666666    6666666666


Q ss_pred             eccceecccccc-------cccccCcEE-eCCcccCceeCHHH
Q 023997          175 LTNAVLVRTVLT-------RSDLGGAII-EGADFSDAVIDLAQ  209 (274)
Q Consensus       175 L~~A~l~~a~l~-------~a~f~~a~l-~gadf~~A~L~~~q  209 (274)
                      |++|+|.+++|.       +++|.+++| ++++|++|+|++.+
T Consensus       113 L~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~  155 (613)
T 3nb2_A          113 LKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK  155 (613)
T ss_dssp             CTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred             ecccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence            655555555555       455555555 55555555554443

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.63  E-value=8.9e-17  Score=158.55  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             CCceecCccccCccccCc------eecCceeccceecCceecCccccccccccceeecceecccccccccccceeeccee
Q 023997          101 SAAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN  174 (274)
Q Consensus       101 sg~~f~~~dL~~~~F~~~------dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~ad  174 (274)
                      .+.+|+++||++++|.++      +..+++|.+++|.+|+|.+++|++++|.+|+|.+|+|++|+|++|+|.+|+|.+|+
T Consensus        38 ~drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAn  117 (627)
T 2qyu_A           38 ADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVF  117 (627)
T ss_dssp             TTTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCE
T ss_pred             cCCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcc
Confidence            345777777777777664      22333333333333333333333333333333333333333333333333333333


Q ss_pred             eccceec--ccccccccccCcEE-eCCcccCceeCHHH
Q 023997          175 LTNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLAQ  209 (274)
Q Consensus       175 L~~A~l~--~a~l~~a~f~~a~l-~gadf~~A~L~~~q  209 (274)
                      |.+|+|.  +|+|.+|+|.+++| +||+|++|+|++.+
T Consensus       118 L~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad  155 (627)
T 2qyu_A          118 LQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD  155 (627)
T ss_dssp             ECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred             cCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence            3333332  34444455555554 35555555554443

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.57  E-value=1.2e-15  Score=150.55  Aligned_cols=101  Identities=21%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             cCCCceecCccccCc-----------cccCceecCceeccceecCceecCccccccccccceeecceecccccccccccc
Q 023997           99 IGSAAQFGSADLRKA-----------VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR  167 (274)
Q Consensus        99 ~lsg~~f~~~dL~~~-----------~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~  167 (274)
                      .+++++|++++|.++           +|.+++|.+++|.+++|++++|.+|+|++|+|.+++|.+|+|.+|+|++|+|.+
T Consensus        41 DFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~g  120 (627)
T 2qyu_A           41 DFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQY  120 (627)
T ss_dssp             BCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECC
T ss_pred             cCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCC
Confidence            355566666665553           344444444444444444444444444444444444444444444444444444


Q ss_pred             eeec--ceeeccceeccccc-ccccccCcEEeCCc
Q 023997          168 MVLN--EANLTNAVLVRTVL-TRSDLGGAIIEGAD  199 (274)
Q Consensus       168 a~f~--~adL~~A~l~~a~l-~~a~f~~a~l~gad  199 (274)
                      ++|.  +|+|++|+|.+++| .+++|++|+|++++
T Consensus       121 A~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad  155 (627)
T 2qyu_A          121 SITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD  155 (627)
T ss_dssp             CTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred             ccccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence            4443  34444444444444 23333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	1e-23
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	4e-15
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-11
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	7e-08
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-07
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	1e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	6e-06
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.002
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.002
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.002

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 91.4 bits (226), Expect = 1e-23
 Identities = 51/132 (38%), Positives = 72/132 (54%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
           A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GADL++
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTN 60

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNP 222
            L        A+LTNAVL   ++ R+    A I GADFS AV+D+ +   LC  A+G NP
Sbjct: 61  GLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNP 120

Query: 223 ITGVSTRKSLGC 234
            TGVSTR+SL C
Sbjct: 121 KTGVSTRESLRC 132

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 27/100 (27%), Positives = 44/100 (44%)

Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
           A    A L  A+        A    A+++ ++   +  + A + +A   +AN   ADLS 
Sbjct: 75  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSG 134

Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 202
             +    L++ANL  A L R  LT ++L  A +EG     
Sbjct: 135 ADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 113 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN- 171
           A         A    A + E+  + +    A LE+A+   AN   ADLS+  ++   L+ 
Sbjct: 75  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSG 134

Query: 172 ----EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 206
                A+L  A L +  L R++L GA +E A+    +++
Sbjct: 135 ADLAIADLHQANLHQAALERANLTGANLEDANLEGTILE 173

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
             A    A++R+A     +   AN  +AD+  +D + +  + A L +A   +AN TGA+L
Sbjct: 108 EQAILSHANIREA-----DLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANL 162

Query: 161 SDTLMDRMVLNEANLTNAVL 180
            D          ANL   +L
Sbjct: 163 ED----------ANLEGTIL 172

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 30/115 (26%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVA---------------------------- 150
           +F   +   A +   + SG+  +GA L++A                              
Sbjct: 16  DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA 75

Query: 151 --YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
               A    A L   ++D  VLN+ANL  A L + +L+ +++  A +  A+   A
Sbjct: 76  DLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAA 130

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 160
           S A    ADL +A     +   A+   AD+ +++   +    A L  A    AN  G  L
Sbjct: 113 SHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTIL 172

Query: 161 SD 162
             
Sbjct: 173 EG 174

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 118 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 168
           + +    FT  D R+ D S      A   +      +F+G +L+++     
Sbjct: 1   QQWVDCEFTGRDFRDEDLSRLHTERAMFSEC-----DFSGVNLAESQHRGS 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 159 DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
           DL   ++    L+ A  T A L    L  + +   +   A    A +D+ Q  A 
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAF 171

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 104 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAY 144
           Q+   +        E+  R +   A   E DFSG     + 
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
           N          + ++D       GA L  A    A    ADL    +D ++   A+L  A
Sbjct: 102 NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGA 161

Query: 179 VL-VRTVLTRSDLGGAIIEG 197
            + V   +  +   G  + G
Sbjct: 162 RVDVDQAVAFAAAHGLCLAG 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.95
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.77
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.71
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.7
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.68
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.68

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.95  E-value=8.6e-29  Score=199.25  Aligned_cols=132  Identities=39%  Similarity=0.587  Sum_probs=128.9

Q ss_pred             ceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccceecc
Q 023997          103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  182 (274)
Q Consensus       103 ~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l~~  182 (274)
                      ++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|++++|.+
T Consensus         1 A~F~~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~   80 (132)
T d2f3la1           1 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE   80 (132)
T ss_dssp             CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTT
T ss_pred             CccCCCCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCcEEeCCcccCceeCHHHHHHHhhhccCCCCCCCcchhhhcCC
Q 023997          183 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC  234 (274)
Q Consensus       183 a~l~~a~f~~a~l~gadf~~A~L~~~q~~~lc~~a~g~np~tg~~tr~sLgc  234 (274)
                      ++|.+++|.+++|++++|++|.|++.+++.+|.+++|+||.++.+||.+|||
T Consensus        81 a~l~~a~~~~a~l~~adfs~a~L~~~~l~~~~~~~~g~n~~~~~~~~~~l~~  132 (132)
T d2f3la1          81 AIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC  132 (132)
T ss_dssp             CEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC
T ss_pred             CCcCCCCcCCCEECcCCCCCccCCHHHHHHHhccCcccCCCCcchhhhccCC
Confidence            9999999999999999999999999999999999999999999999999999

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.77  E-value=3.4e-20  Score=148.34  Aligned_cols=103  Identities=21%  Similarity=0.250  Sum_probs=61.0

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccce
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  179 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~  179 (274)
                      +++++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|.+++
T Consensus         8 L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~~a~   87 (132)
T d2f3la1           8 LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTK   87 (132)
T ss_dssp             CTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEE
T ss_pred             ccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCCCCcCCCC
Confidence            45556666666666666666666666666666666666666666666666666666665556555555555555555555


Q ss_pred             ecccccccccccCcEEeCCcccC
Q 023997          180 LVRTVLTRSDLGGAIIEGADFSD  202 (274)
Q Consensus       180 l~~a~l~~a~f~~a~l~gadf~~  202 (274)
                      |.+++|++++|++++|++++++.
T Consensus        88 ~~~a~l~~adfs~a~L~~~~l~~  110 (132)
T d2f3la1          88 FDDAKITGADFSLAVLDVYEVDK  110 (132)
T ss_dssp             CTTCBCTTCBCTTCEECHHHHHH
T ss_pred             cCCCEECcCCCCCccCCHHHHHH
Confidence            55555555555555555555443

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1.2e-18  Score=145.94  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             ceeecceeeccceecccccccccccCcEEeCCcccCceeCHHHH
Q 023997          167 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK  210 (274)
Q Consensus       167 ~a~f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~  210 (274)
                      +++|.+++|++++|.+++|++++|.+++|.++||+++.|++..+
T Consensus       110 ~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~~~~  153 (181)
T d2bm5a1         110 ETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW  153 (181)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred             ccceecccccccchhheeecCcCccCCCcCCCCcCCCEecCCCc
Confidence            33334444444444444444444445555555555555555543

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=2.8e-18  Score=143.75  Aligned_cols=25  Identities=40%  Similarity=0.465  Sum_probs=9.3

Q ss_pred             cccccccCcEEeCCcccCceeCHHH
Q 023997          185 LTRSDLGGAIIEGADFSDAVIDLAQ  209 (274)
Q Consensus       185 l~~a~f~~a~l~gadf~~A~L~~~q  209 (274)
                      |.+++|.+++|.+++|++++|.+.+
T Consensus       123 f~~~~l~~~~~~~a~l~~adf~~~~  147 (181)
T d2bm5a1         123 LRGADLSGARTTGARLDDADLRGAT  147 (181)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             hhheeecCcCccCCCcCCCCcCCCE
Confidence            3333333333333333333333333

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.68  E-value=1.1e-17  Score=139.44  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=16.9

Q ss_pred             CCCceecCccccCccccCceecCceeccceecCceecCcccc
Q 023997          100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFN  141 (274)
Q Consensus       100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~  141 (274)
                      +++++|++++|++++|.++.|.+++|.++.|.+|+|.+++|.
T Consensus        22 ls~~~f~~~~f~~~~f~~~~f~~~~f~~~~~~~~~f~~~~~~   63 (175)
T d2j8ka1          22 LRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLN   63 (175)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CCCCccCCcCCCCCCcCCCCcchhhccccccccccccccccc
Confidence            344444444444444444444444443333333333333333

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.68  E-value=1.2e-17  Score=139.13  Aligned_cols=15  Identities=20%  Similarity=0.085  Sum_probs=5.6

Q ss_pred             CceecCccccCcccc
Q 023997          102 AAQFGSADLRKAVHV  116 (274)
Q Consensus       102 g~~f~~~dL~~~~F~  116 (274)
                      +++|.+++|+++.|.
T Consensus        29 ~~~f~~~~f~~~~f~   43 (175)
T d2j8ka1          29 NINLSGAILHGAMLD   43 (175)
T ss_dssp             TCBCTTCBCTTCBCT
T ss_pred             CcCCCCCCcCCCCcc
Confidence            333333333333333